Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
CAMTA1	23261	broad.mit.edu	36	1	7733854	7733854	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	7733854	7733854	CAMTA1	1	T	T	A	64
C8B	732	broad.mit.edu	36	1	57187956	57187956	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	57187956	57187956	C8B	1	G	G	C	40
ZZZ3	26009	broad.mit.edu	36	1	77814395	77814395	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	77814395	77814395	ZZZ3	1	A	A	G	8
SORT1	6272	broad.mit.edu	36	1	109671666	109671666	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	109671666	109671666	SORT1	1	G	G	A	39
FLG2	388698	broad.mit.edu	36	1	150592486	150592486	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	150592486	150592486	FLG2	1	G	G	A	36
S100A2	6273	broad.mit.edu	36	1	151800573	151800573	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	151800573	151800573	S100A2	1	T	T	C	52
C1orf104	284618	broad.mit.edu	36	1	153557748	153557748	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	153557748	153557748	C1orf104	1	T	T	G	58
ATP1A4	480	broad.mit.edu	36	1	158395466	158395466	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	158395466	158395466	ATP1A4	1	G	G	A	35
SCYL3	57147	broad.mit.edu	36	1	168090508	168090508	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	168090508	168090508	SCYL3	1	C	C	T	30
RGL1	23179	broad.mit.edu	36	1	182140664	182140664	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	182140664	182140664	RGL1	1	A	A	C	8
HMCN1	83872	broad.mit.edu	36	1	184274722	184274722	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	184274722	184274722	HMCN1	1	C	C	G	28
CFH	3075	broad.mit.edu	36	1	194962575	194962575	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	194962575	194962575	CFH	1	C	C	A	22
HEATR1	55127	broad.mit.edu	36	1	234814953	234814953	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	234814953	234814953	HEATR1	1	C	C	T	25
FMN2	56776	broad.mit.edu	36	1	238437498	238437498	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	238437498	238437498	FMN2	1	T	T	C	54
JMJD1C	221037	broad.mit.edu	36	10	64630241	64630241	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	64630241	64630241	JMJD1C	10	C	C	A	18
DNA2	1763	broad.mit.edu	36	10	69895464	69895464	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	69895464	69895464	DNA2	10	G	G	C	45
CBARA1	10367	broad.mit.edu	36	10	73805581	73805581	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	73805581	73805581	CBARA1	10	C	C	G	17
LRIT2	340745	broad.mit.edu	36	10	85975220	85975220	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	85975220	85975220	LRIT2	10	C	C	T	18
SEC31B	25956	broad.mit.edu	36	10	102245214	102245214	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	102245214	102245214	SEC31B	10	G	G	C	43
DEPDC7	91614	broad.mit.edu	36	11	33011542	33011542	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33011542	33011542	DEPDC7	11	C	C	A	29
GANAB	23193	broad.mit.edu	36	11	62155158	62155158	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	62155158	62155158	GANAB	11	G	G	C	45
GALNT8	26290	broad.mit.edu	36	12	4723978	4723978	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	4723978	4723978	GALNT8	12	G	G	C	34
TAS2R8	50836	broad.mit.edu	36	12	10849981	10849981	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	10849981	10849981	TAS2R8	12	T	T	C	52
PIK3C2G	5288	broad.mit.edu	36	12	18391014	18391014	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	18391014	18391014	PIK3C2G	12	C	C	T	17
MLL2	8085	broad.mit.edu	36	12	47718328	47718328	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	47718328	47718328	MLL2	12	G	G	A	46
KRT6B	3854	broad.mit.edu	36	12	51129602	51129602	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	51129602	51129602	KRT6B	12	C	C	G	28
TIMELESS	8914	broad.mit.edu	36	12	55103642	55103642	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	55103642	55103642	TIMELESS	12	G	G	A	35
PPP1R12A	4659	broad.mit.edu	36	12	78723566	78723566	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	78723566	78723566	PPP1R12A	12	G	G	C	48
POC1B	282809	broad.mit.edu	36	12	88388362	88388362	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	88388362	88388362	POC1B	12	C	C	T	23
FAM123A	219287	broad.mit.edu	36	13	24641819	24641819	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24641819	24641819	FAM123A	13	G	G	A	39
LPAR6	10161	broad.mit.edu	36	13	47884114	47884114	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	47884114	47884114	LPAR6	13	T	T	G	59
RPGRIP1	57096	broad.mit.edu	36	14	20863383	20863383	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	20863383	20863383	RPGRIP1	14	G	G	T	44
AHNAK2	113146	broad.mit.edu	36	14	104486219	104486219	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	104486219	104486219	AHNAK2	14	G	G	T	43
DISP2	85455	broad.mit.edu	36	15	38448638	38448638	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	38448638	38448638	DISP2	15	G	G	A	36
CDAN1	146059	broad.mit.edu	36	15	40805047	40805047	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	40805047	40805047	CDAN1	15	G	G	A	42
DMXL2	23312	broad.mit.edu	36	15	49616223	49616223	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49616223	49616223	DMXL2	15	C	C	G	24
LRRC49	54839	broad.mit.edu	36	15	69089386	69089386	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	69089386	69089386	LRRC49	15	G	G	A	44
EDC3	80153	broad.mit.edu	36	15	72751170	72751170	+	Splice_Site_SNP	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	72751170	72751170	EDC3	15	T	T	C	55
SGK269	79834	broad.mit.edu	36	15	75259106	75259106	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	75259106	75259106	SGK269	15	C	C	T	32
IQGAP1	8826	broad.mit.edu	36	15	88830276	88830276	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	88830276	88830276	IQGAP1	15	A	A	G	12
BLM	641	broad.mit.edu	36	15	89091715	89091715	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	89091715	89091715	BLM	15	C	C	G	21
ERN2	10595	broad.mit.edu	36	16	23621340	23621340	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	23621340	23621340	ERN2	16	G	G	T	42
NOL3	8996	broad.mit.edu	36	16	65766092	65766092	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	65766092	65766092	NOL3	16	G	G	T	41
C16orf7	9605	broad.mit.edu	36	16	88303685	88303685	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	88303685	88303685	C16orf7	16	C	C	G	18
DNAH9	1770	broad.mit.edu	36	17	11813435	11813435	+	Missense_Mutation	SNP	C	C	T	rs9913494	byCluster;byHapMap	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	11813435	11813435	DNAH9	17	C	C	T	23
CDK12	51755	broad.mit.edu	36	17	34927295	34927295	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	34927295	34927295	CDK12	17	A	A	G	9
SGCA	6442	broad.mit.edu	36	17	45602634	45602634	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	45602634	45602634	SGCA	17	C	C	A	22
MAP2K6	5608	broad.mit.edu	36	17	65028789	65028789	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	65028789	65028789	MAP2K6	17	T	T	G	57
C18orf34	374864	broad.mit.edu	36	18	29049566	29049566	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	29049566	29049566	C18orf34	18	A	A	T	13
SAFB2	9667	broad.mit.edu	36	19	5567291	5567291	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5567291	5567291	SAFB2	19	C	C	T	20
FBN3	84467	broad.mit.edu	36	19	8051997	8051997	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	8051997	8051997	FBN3	19	T	T	C	58
MUC16	94025	broad.mit.edu	36	19	8947728	8947728	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	8947728	8947728	MUC16	19	G	G	C	45
COL5A3	50509	broad.mit.edu	36	19	9951669	9951669	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	9951669	9951669	COL5A3	19	C	C	A	17
SLC44A2	57153	broad.mit.edu	36	19	10607124	10607124	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	10607124	10607124	SLC44A2	19	A	A	G	2
RYR1	6261	broad.mit.edu	36	19	43715185	43715185	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43715185	43715185	RYR1	19	A	A	G	9
TIMM50	92609	broad.mit.edu	36	19	44670651	44670651	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	44670651	44670651	TIMM50	19	C	C	G	25
CIC	23152	broad.mit.edu	36	19	47485319	47485319	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47485319	47485319	CIC	19	G	G	C	34
CCDC8	83987	broad.mit.edu	36	19	51607051	51607051	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	51607051	51607051	CCDC8	19	C	C	G	18
LMTK3	114783	broad.mit.edu	36	19	53686273	53686273	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	53686273	53686273	LMTK3	19	G	G	A	43
BCL2L12	83596	broad.mit.edu	36	19	54868792	54868792	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	54868792	54868792	BCL2L12	19	T	T	C	59
ZSCAN5A	79149	broad.mit.edu	36	19	61425812	61425812	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	61425812	61425812	ZSCAN5A	19	T	T	A	55
KCNS3	3790	broad.mit.edu	36	2	17976252	17976252	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17976252	17976252	KCNS3	2	C	C	G	29
ERCC3	2071	broad.mit.edu	36	2	127762878	127762878	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	127762878	127762878	ERCC3	2	G	G	A	41
LRP2	4036	broad.mit.edu	36	2	169742717	169742717	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	169742717	169742717	LRP2	2	G	G	T	34
TTN	7273	broad.mit.edu	36	2	179102045	179102045	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	179102045	179102045	TTN	2	T	T	G	56
MAP2	4133	broad.mit.edu	36	2	210226198	210226198	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	210226198	210226198	MAP2	2	C	C	A	17
INPP5D	3635	broad.mit.edu	36	2	233777662	233777662	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	233777662	233777662	INPP5D	2	C	C	A	26
SIRPG	55423	broad.mit.edu	36	20	1565038	1565038	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	1565038	1565038	SIRPG	20	A	A	G	8
PRAME	23532	broad.mit.edu	36	22	21229242	21229243	+	Missense_Mutation	DNP	CT	CT	AA	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	21229242	21229243	PRAME	22	CT	CT	AA	24
ZPLD1	131368	broad.mit.edu	36	3	103670597	103670597	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	103670597	103670597	ZPLD1	3	G	G	A	33
MYLK	4638	broad.mit.edu	36	3	124934450	124934450	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	124934450	124934450	MYLK	3	C	C	T	21
KALRN	8997	broad.mit.edu	36	3	125918907	125918907	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	125918907	125918907	KALRN	3	A	A	T	6
EIF2B5	8893	broad.mit.edu	36	3	185344623	185344623	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	185344623	185344623	EIF2B5	3	C	C	T	27
EIF4G1	1981	broad.mit.edu	36	3	185523991	185523991	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	185523991	185523991	EIF4G1	3	A	A	G	7
TP63	8626	broad.mit.edu	36	3	191068418	191068418	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	191068418	191068418	TP63	3	A	A	C	2
PROM1	8842	broad.mit.edu	36	4	15596715	15596715	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	15596715	15596715	PROM1	4	T	T	C	60
FAT1	2195	broad.mit.edu	36	4	187762555	187762555	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	187762555	187762555	FAT1	4	C	C	A	24
FYB	2533	broad.mit.edu	36	5	39170747	39170747	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	39170747	39170747	FYB	5	C	C	A	24
MCTP1	79772	broad.mit.edu	36	5	94270719	94270719	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	94270719	94270719	MCTP1	5	T	T	G	51
ADAMTS19	171019	broad.mit.edu	36	5	129100807	129100807	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	129100807	129100807	ADAMTS19	5	T	T	A	60
UNC5CL	222643	broad.mit.edu	36	6	41110776	41110776	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	41110776	41110776	UNC5CL	6	T	T	C	54
TREM2	54209	broad.mit.edu	36	6	41234688	41234688	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	41234688	41234688	TREM2	6	G	G	A	35
MDN1	23195	broad.mit.edu	36	6	90474973	90474973	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	90474973	90474973	MDN1	6	C	C	G	29
REV3L	5980	broad.mit.edu	36	6	111844259	111844259	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	111844259	111844259	REV3L	6	G	G	C	37
SMPDL3A	10924	broad.mit.edu	36	6	123159671	123159671	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	123159671	123159671	SMPDL3A	6	T	T	C	49
FBXL18	80028	broad.mit.edu	36	7	5507229	5507229	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	5507229	5507229	FBXL18	7	C	C	T	24
ZMIZ2	83637	broad.mit.edu	36	7	44767954	44767954	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44767954	44767954	ZMIZ2	7	C	C	A	17
PKD1L1	168507	broad.mit.edu	36	7	47839289	47839289	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	47839289	47839289	PKD1L1	7	C	C	T	28
GRB10	2887	broad.mit.edu	36	7	50709713	50709713	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	50709713	50709713	GRB10	7	A	A	G	3
AZGP1	563	broad.mit.edu	36	7	99403866	99403866	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	99403866	99403866	AZGP1	7	C	C	G	21
TMEM209	84928	broad.mit.edu	36	7	129619850	129619850	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	129619850	129619850	TMEM209	7	C	C	T	30
PAG1	55824	broad.mit.edu	36	8	82059728	82059728	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	82059728	82059728	PAG1	8	T	T	C	64
ATAD2	29028	broad.mit.edu	36	8	124419057	124419057	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	124419057	124419057	ATAD2	8	C	C	G	29
AIFM1	9131	broad.mit.edu	36	X	129109175	129109175	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	129109175	129109175	AIFM1	23	G	G	T	45
TP53	7157	broad.mit.edu	36	17	7519235	7519235	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	7519235	7519235	TP53	17	G	-	G	35
OR4F21	441308	broad.mit.edu	36	8	106893	106894	+	Frame_Shift_Del	DEL	GA	-	GA	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	106893	106894	OR4F21	8	GA	-	GA	45
PRUNE2	158471	broad.mit.edu	36	9	78460151	78460161	+	Splice_Site_Del	DEL	GCTCTCACCAG	-	GCTCTCACCAG	novel	Unknown	TCGA-59-2351-01	TCGA-59-2351-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Splice_Site_Del	DEL	78460151	78460161	PRUNE2	9	GCTCTCACCAG	-	GCTCTCACCAG	46
