Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ANK1	0	genome.wustl.edu	37	8	41551422	41551422	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	8	41551422	41551422	C	T	SNP	ANK1	NM_001142446.1	human	genbank	58_37c	-1	reviewed	missense	c.3649	p.V1217I	1.000	NULL	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMSmart_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like	-	no_errors
ANKLE2	0	genome.wustl.edu	37	12	133313525	133313525	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	12	133313525	133313525	G	A	SNP	ANKLE2	NM_015114.1	human	genbank	58_37c	-1	validated	missense	c.1547	p.P516L	1.000	NULL	superfamily_Ankyrin repeat,HMMPfam_LEM,superfamily_LEM domain	-	no_errors
BCKDHA	0	genome.wustl.edu	37	19	41903744	41903744	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	41903744	41903744	G	A	SNP	BCKDHA	NM_000709.3	human	genbank	58_37c	+1	reviewed	silent	c.12	p.A4	0.101	NULL	HMMPfam_E1_dh,superfamily_SSF52518	-	no_errors
BMX	0	genome.wustl.edu	37	X	15554529	15554529	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	X	15554529	15554529	G	A	SNP	BMX	NM_001721.6	human	genbank	58_37c	+1	reviewed	missense	c.1201	p.D401N	0.000	superfamily_SSF55550	HMMPfam_SH2,HMMSmart_SH2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_BTK,HMMSmart_BTK,HMMPfam_PH,HMMSmart_PH,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF50729,superfamily_SSF55550	-	no_errors
C3orf30	0	genome.wustl.edu	37	3	118865802	118865802	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	3	118865802	118865802	G	A	SNP	C3orf30	NM_152539.2	human	genbank	58_37c	+1	validated	missense	c.766	p.V256I	0.000	NULL	NULL	-	no_errors
CCDC106	0	genome.wustl.edu	37	19	56160842	56160842	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	56160842	56160842	C	T	SNP	CCDC106	NM_013301.2	human	genbank	58_37c	+1	validated	silent	c.205	p.L69	1.000	NULL	NULL	-	no_errors
CGNL1	0	genome.wustl.edu	37	15	57754042	57754042	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	15	57754042	57754042	T	C	SNP	CGNL1	NM_032866.3	human	genbank	58_37c	+1	validated	silent	c.2355	p.Y785	0.362	NULL	HMMPfam_Myosin_tail_1	-	no_errors
CROCCL1	0	genome.wustl.edu	37	1	16945452	16945452	+	RNA	SNP	C	C	T	rs11260834	byFrequency	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	1	16945452	16945452	C	T	SNP	CROCCL1	NR_026752.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
DCAF8L1	0	genome.wustl.edu	37	X	27998516	27998516	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	X	27998516	27998516	G	C	SNP	DCAF8L1	NM_001017930.1	human	genbank	58_37c	-1	reviewed	missense	c.936	p.F312L	1.000	HMMSmart_WD40,superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ENSG00000173213	0	genome.wustl.edu	37	18	48209	48209	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	18	48209	48209	C	T	SNP	ENSG00000173213	ENST00000308911	human	ensembl	58_37c	-1	known	silent	c.516	p.S172	1.000	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ	HMMPfam_Tubulin,superfamily_Tub_FtsZ_C,PatternScan_TUBULIN_B_AUTOREG,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin_FtsZ	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	12380	12380	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	MT	12380	12380	T	C	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.44	p.L15P	NULL	NULL	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000245932	0	genome.wustl.edu	37	19	53302798	53302798	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	53302798	53302798	G	A	SNP	ENSG00000245932	ENST00000500436	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
FAM71A	0	genome.wustl.edu	37	1	212799630	212799630	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	1	212799630	212799630	G	A	SNP	FAM71A	NM_153606.3	human	genbank	58_37c	+1	validated	missense	c.1411	p.D471N	0.000	NULL	NULL	-	no_errors
GANC	0	genome.wustl.edu	37	15	42619578	42619578	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	15	42619578	42619578	G	A	SNP	GANC	NM_198141.2	human	genbank	58_37c	+1	reviewed	missense	c.1438	p.D480N	1.000	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,superfamily_(Trans)glycosidases	-	no_errors
GATA3	0	genome.wustl.edu	37	10	8115955	8115956	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	10	8115955	8115956	-	C	INS	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1304_1305	p.S437fs	1.000:0.921	NULL	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
HYOU1	0	genome.wustl.edu	37	11	118917361	118917361	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	11	118917361	118917361	G	A	SNP	HYOU1	NM_001130991.1	human	genbank	58_37c	-1	reviewed	missense	c.2749	p.R917W	0.796	superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain	HMMPfam_HSP70,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain,superfamily_Actin-like ATPase domain	-	no_errors
KIF1A	0	genome.wustl.edu	37	2	241684897	241684897	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	2	241684897	241684897	G	A	SNP	KIF1A	NM_004321.4	human	genbank	58_37c	-1	reviewed	missense	c.3109	p.P1037S	1.000	NULL	HMMPfam_FHA,HMMSmart_SM00240,HMMPfam_Kinesin,HMMSmart_SM00129,HMMPfam_PH,HMMSmart_SM00233,superfamily_SMAD/FHA domain,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_PH domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC100287767	0	genome.wustl.edu	37	6	37139176	37139176	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	6	37139176	37139176	C	T	SNP	LOC100287767	XM_002342627.1	human	genbank	58_37c	-1	model	missense	c.145	p.V49I	1.000	NULL	NULL	-	no_errors
LOC283922	0	genome.wustl.edu	37	16	74366426	74366427	+	RNA	INS	-	-	TTGT	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	16	74366426	74366427	-	TTGT	INS	LOC283922	NR_026950.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.339:0.240	-	-	-	pseudogene
LOC349114	0	genome.wustl.edu	37	7	39832680	39832680	+	RNA	SNP	C	C	A	rs144571617	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	7	39832680	39832680	C	A	SNP	LOC349114	NR_026999.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.979	-	-	-	no_errors
MAP4K1	0	genome.wustl.edu	37	19	39092118	39092118	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	39092118	39092118	G	A	SNP	MAP4K1	NM_007181.4	human	genbank	58_37c	-1	validated	silent	c.1494	p.I498	1.000	NULL	HMMPfam_CNH,HMMSmart_CNH,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MCCC1	0	genome.wustl.edu	37	3	182812366	182812367	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	3	182812366	182812367	-	A	INS	MCCC1	NM_020166.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.117_116	p.M39fs	0.969:0.660	NULL	HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_2,HMMPfam_CPSase_L_chain,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,superfamily_Rudmnt_hyb_motif,superfamily_PreATP-grasp-like,superfamily_SSF56059	-	no_errors
METAP1	0	genome.wustl.edu	37	4	99966365	99966365	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	4	99966365	99966365	G	T	SNP	METAP1	NM_015143.2	human	genbank	58_37c	+1	validated	missense	c.691	p.D231Y	1.000	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase,PatternScan_MAP_1	-	no_errors
MTOR	0	genome.wustl.edu	37	1	11300583	11300583	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	1	11300583	11300583	G	C	SNP	MTOR	NM_004958.3	human	genbank	58_37c	-1	reviewed	silent	c.1563	p.L521	1.000	superfamily_ARM-type_fold	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_FAT,HMMPfam_FATC,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF48452	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100639913	100639913	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	7	100639913	100639913	C	G	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.6498	p.S2166R	0.002	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
NTRK2	0	genome.wustl.edu	37	9	87635261	87635261	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	9	87635261	87635261	C	T	SNP	NTRK2	NM_006180.3	human	genbank	58_37c	+1	reviewed	silent	c.2313	p.Y771	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_LRR_1,PatternScan_RECEPTOR_TYR_KIN_II,HMMSmart_IGc2,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
OVOS	0	genome.wustl.edu	37	12	9716786	9716786	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	12	9716786	9716786	C	G	SNP	OVOS	XM_001715897.1	human	genbank	58_37c	+1	model	missense	c.3190	p.L1064V	0.966	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp	HMMPfam_A2M,HMMPfam_A2M_N,PatternScan_PHOSPHOPANTETHEINE,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl	-	pseudogene
PLCE1	0	genome.wustl.edu	37	10	96076406	96076406	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	10	96076406	96076406	C	A	SNP	PLCE1	NM_016341.3	human	genbank	58_37c	+1	reviewed	missense	c.6235	p.P2079T	0.995	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RA,HMMSmart_SM00314,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand	-	no_errors
PTPRH	0	genome.wustl.edu	37	19	55707989	55707989	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	55707989	55707989	C	G	SNP	PTPRH	NM_002842.3	human	genbank	58_37c	-1	validated	missense	c.2158	p.G720R	0.001	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RASGRP4	0	genome.wustl.edu	37	19	38910824	38910824	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	38910824	38910824	G	A	SNP	RASGRP4	NM_170604.2	human	genbank	58_37c	-1	reviewed	silent	c.456	p.T152	0.045	superfamily_Ras GEF	HMMPfam_RasGEF_N,HMMPfam_RasGEF,HMMSmart_SM00147,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Ras GEF,superfamily_Cysteine-rich domain	-	no_errors
RFNG	0	genome.wustl.edu	37	17	80008605	80008605	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	17	80008605	80008605	G	A	SNP	RFNG	NM_002917.1	human	genbank	58_37c	-1	validated	missense	c.352	p.R118C	1.000	HMMPfam_Fringe	HMMPfam_Fringe	-	no_errors
RP1L1	0	genome.wustl.edu	37	8	10466300	10466300	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	8	10466300	10466300	G	A	SNP	RP1L1	NM_178857.5	human	genbank	58_37c	-1	validated	nonsense	c.5308	p.Q1770*	0.000	HMMPfam_S-antigen	HMMPfam_DCX,HMMPfam_S-antigen,superfamily_SSF89837	-	no_errors
SEMA3A	0	genome.wustl.edu	37	7	83610743	83610743	+	Missense_Mutation	SNP	G	G	A	rs148900275	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	7	83610743	83610743	G	A	SNP	SEMA3A	NM_006080.2	human	genbank	58_37c	-1	reviewed	missense	c.1546	p.R516W	1.000	superfamily_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMSmart_IG,HMMSmart_PSI,HMMPfam_ig,superfamily_Plexin-like_fold,superfamily_SSF48726	-	no_errors
TMEM132E	0	genome.wustl.edu	37	17	32963064	32963064	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	17	32963064	32963064	G	A	SNP	TMEM132E	NM_207313.1	human	genbank	58_37c	+1	provisional	silent	c.1746	p.T582	0.141	NULL	NULL	-	no_errors
TOP1P1	0	genome.wustl.edu	37	1	171308652	171308652	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	1	171308652	171308652	C	A	SNP	TOP1P1	NR_002719.2	human	genbank	58_37c	+1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
TTC7B	0	genome.wustl.edu	37	14	91156023	91156023	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	14	91156023	91156023	G	A	SNP	TTC7B	NM_001010854.1	human	genbank	58_37c	-1	provisional	missense	c.811	p.R271W	1.000	superfamily_TPR-like	HMMPfam_TPR_1,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
USP32	0	genome.wustl.edu	37	17	58288421	58288421	+	Missense_Mutation	SNP	C	C	T	rs146577219	byFrequency	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	17	58288421	58288421	C	T	SNP	USP32	NM_032582.3	human	genbank	58_37c	-1	validated	missense	c.2377	p.E793K	1.000	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,HMMSmart_EFh,HMMSmart_DUSP,HMMPfam_DUF1055,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473,superfamily_SSF54001	-	no_errors
WNT4	0	genome.wustl.edu	37	1	22446727	22446727	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	1	22446727	22446727	G	A	SNP	WNT4	NM_030761.4	human	genbank	58_37c	-1	reviewed	missense	c.872	p.T291M	1.000	HMMPfam_wnt,HMMSmart_WNT1	HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1	-	no_errors
XRCC2	0	genome.wustl.edu	37	7	152345989	152345989	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	7	152345989	152345989	G	A	SNP	XRCC2	NM_005431.1	human	genbank	58_37c	-1	reviewed	missense	c.581	p.T194M	0.999	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
