Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
CCR4	1233	genome.wustl.edu	37	3	32995697	32995697	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	64d42c62-5c2d-49f5-856e-72beef88044d	60275a8f-c7da-44a5-818e-56c6f99b8a5e	3	32995697	32995697	G	A	SNP	CCR4	NM_005508.4	human	genbank	58_37c	+1	reviewed	silent	c.783	p.V261	0.999	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
DNAH8	1769	genome.wustl.edu	37	6	38754658	38754658	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	64d42c62-5c2d-49f5-856e-72beef88044d	60275a8f-c7da-44a5-818e-56c6f99b8a5e	6	38754658	38754658	A	-	DEL	DNAH8	NM_001371.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.1862	p.D621fs	1.000	HMMPfam_DHC_N1	PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EEF1A1	1915	genome.wustl.edu	37	6	74228775	74228776	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64d42c62-5c2d-49f5-856e-72beef88044d	60275a8f-c7da-44a5-818e-56c6f99b8a5e	6	74228775	74228776	-	T	INS	EEF1A1	NM_001402.5	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.501_500	p.Y167fs	0.877:0.999	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,HMMPfam_GTP_EFTU_D3,HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SCHIP1	29970	genome.wustl.edu	37	3	159482272	159482274	+	In_Frame_Del	DEL	GCA	GCA	-	rs149416208	by1000genomes	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	GCA	GCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64d42c62-5c2d-49f5-856e-72beef88044d	60275a8f-c7da-44a5-818e-56c6f99b8a5e	3	159482272	159482274	GCA	-	DEL	SCHIP1	NM_014575.2	human	genbank	58_37c	+1	provisional	in_frame_del	c.104_106	p.S39in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_SCHIP-1	-	no_errors
TLR7	51284	genome.wustl.edu	37	X	12904271	12904271	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	64d42c62-5c2d-49f5-856e-72beef88044d	60275a8f-c7da-44a5-818e-56c6f99b8a5e	X	12904271	12904271	A	G	SNP	TLR7	NM_016562.3	human	genbank	58_37c	+1	reviewed	missense	c.644	p.N215S	1.000	HMMSmart_SM00369,superfamily_L domain-like	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
