Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACLY	47	genome.wustl.edu	37	17	40030163	40030163	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	17	40030163	40030163	C	T	SNP	ACLY	NM_001096.2	human	genbank	58_37c	-1	reviewed	missense	c.2543	p.R848Q	1.000	superfamily_Citrate_synthase_core	HMMPfam_CoA_binding,PatternScan_SUCCINYL_COA_LIG_1,HMMPfam_Ligase_CoA,superfamily_NAD(P)-bd,superfamily_CoA_ligase,superfamily_Citrate_synthase_core,PatternScan_SUCCINYL_COA_LIG_2,PatternScan_SUCCINYL_COA_LIG_3,superfamily_SSF56059	-	no_errors
AMBP	259	genome.wustl.edu	37	9	116823771	116823771	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	9	116823771	116823771	G	A	SNP	AMBP	NM_001633.3	human	genbank	58_37c	-1	reviewed	silent	c.786	p.G262	0.941	HMMPfam_Kunitz_BPTI,HMMSmart_KU,PatternScan_BPTI_KUNITZ_1,superfamily_Prot_inh_Kunz-m	HMMPfam_Lipocalin,HMMPfam_Kunitz_BPTI,HMMSmart_KU,PatternScan_BPTI_KUNITZ_1,superfamily_Prot_inh_Kunz-m,PatternScan_LIPOCALIN,superfamily_Calycin	-	no_errors
AOC3	8639	genome.wustl.edu	37	17	41008381	41008381	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	17	41008381	41008381	C	T	SNP	AOC3	NM_003734.2	human	genbank	58_37c	+1	reviewed	silent	c.2106	p.G702	1.000	HMMPfam_Cu_amine_oxid,superfamily_CuNH_oxidase	PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2,HMMPfam_Cu_amine_oxid,superfamily_CuNH_oxidase,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_Cu_amine_oxidase_N-reg	-	no_errors
ATP9A	10079	genome.wustl.edu	37	20	50235558	50235558	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	20	50235558	50235558	G	A	SNP	ATP9A	NM_006045.1	human	genbank	58_37c	-1	validated	missense	c.2140	p.L714F	1.000	HMMPfam_Hydrolase,superfamily_HAD-like	HMMPfam_Hydrolase,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
BRDT	676	genome.wustl.edu	37	1	92445220	92445220	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	1	92445220	92445220	G	A	SNP	BRDT	NM_001726.3	human	genbank	58_37c	+1	validated	missense	c.1193	p.G398D	0.126	NULL	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
C19orf44	84167	genome.wustl.edu	37	19	16611796	16611796	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	19	16611796	16611796	A	C	SNP	C19orf44	NM_032207.2	human	genbank	58_37c	+1	validated	missense	c.193	p.K65Q	0.000	NULL	NULL	-	no_errors
CEP76	79959	genome.wustl.edu	37	18	12697393	12697393	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	18	12697393	12697393	T	C	SNP	CEP76	NM_024899.2	human	genbank	58_37c	-1	provisional	missense	c.535	p.M179V	1.000	NULL	PatternScan_WD_REPEATS_1	-	no_errors
CFTR	1080	genome.wustl.edu	37	7	117305522	117305530	+	In_Frame_Del	DEL	AATAATTAG	AATAATTAG	-	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	AATAATTAG	AATAATTAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	7	117305522	117305530	AATAATTAG	-	DEL	CFTR	NM_000492.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.4146_4154	p.IIR1383in_frame_del	0.997:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CIT	11113	genome.wustl.edu	37	12	120146063	120146063	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	12	120146063	120146063	G	A	SNP	CIT	NM_007174.1	human	genbank	58_37c	-1	validated	missense	c.5006	p.S1669F	1.000	HMMPfam_CNH,HMMSmart_SM00036	HMMSmart_SM00133,HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_CPSASE_2,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	no_errors
CSMD1	64478	genome.wustl.edu	37	8	3216673	3216673	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	8	3216673	3216673	C	T	SNP	CSMD1	NM_033225.5	human	genbank	58_37c	-1	validated	splice_site	c.3307+1	e21+1	1.000	-	-	-	no_errors
DMRTA1	63951	genome.wustl.edu	37	9	22451646	22451646	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	9	22451646	22451646	T	A	SNP	DMRTA1	NM_022160.2	human	genbank	58_37c	+1	validated	silent	c.1251	p.A417	0.683	NULL	HMMPfam_DM,HMMSmart_DM,PatternScan_DM_1,superfamily_DM_DNA_bd,HMMPfam_DMA	-	no_errors
DYNC2H1	79659	genome.wustl.edu	37	11	103055626	103055626	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	11	103055626	103055626	A	G	SNP	DYNC2H1	NM_001080463.1	human	genbank	58_37c	+1	reviewed	missense	c.6479	p.N2160S	1.000	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DYRK2	8445	genome.wustl.edu	37	12	68051820	68051820	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	12	68051820	68051820	G	T	SNP	DYRK2	NM_006482.2	human	genbank	58_37c	+1	reviewed	missense	c.1133	p.R378L	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
EFNB1	1947	genome.wustl.edu	37	X	68060260	68060260	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	X	68060260	68060260	G	A	SNP	EFNB1	NM_004429.4	human	genbank	58_37c	+1	reviewed	silent	c.804	p.R268	0.982	NULL	HMMPfam_Ephrin,superfamily_Cupredoxin,PatternScan_EPHRIN	-	no_errors
EPHB3	2049	genome.wustl.edu	37	3	184299398	184299398	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	3	184299398	184299398	T	C	SNP	EPHB3	NM_004443.3	human	genbank	58_37c	+1	reviewed	silent	c.2985	p.P995	0.091	NULL	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SAM,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Gal_bind_like,superfamily_SAM_homology,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
FAT2	2196	genome.wustl.edu	37	5	150925419	150925419	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	5	150925419	150925419	T	C	SNP	FAT2	NM_001447.2	human	genbank	58_37c	-1	reviewed	missense	c.5269	p.M1757V	0.000	superfamily_Cadherin-like	HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,superfamily_EGF/Laminin	-	no_errors
FAT3	120114	genome.wustl.edu	37	11	92543074	92543074	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	11	92543074	92543074	G	A	SNP	FAT3	NM_001008781.2	human	genbank	58_37c	+1	validated	missense	c.9313	p.A3105T	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FNDC7	163479	genome.wustl.edu	37	1	109271347	109271347	+	Missense_Mutation	SNP	C	C	T	rs143352149	byFrequency	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	1	109271347	109271347	C	T	SNP	FNDC7	NM_001144937.1	human	genbank	58_37c	+1	provisional	missense	c.1463	p.T488M	0.880	HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-	no_errors
HDAC9	9734	genome.wustl.edu	37	7	18801793	18801793	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	7	18801793	18801793	G	T	SNP	HDAC9	NM_178425.2	human	genbank	58_37c	+1	reviewed	missense	c.2057	p.R686L	1.000	HMMPfam_Hist_deacetyl,superfamily_SSF52768	HMMPfam_Hist_deacetyl,superfamily_SSF52768	-	no_errors
ITGA2B	3674	genome.wustl.edu	37	17	42454377	42454377	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	17	42454377	42454377	C	T	SNP	ITGA2B	NM_000419.3	human	genbank	58_37c	-1	reviewed	missense	c.2267	p.S756N	1.000	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain	-	no_errors
ITGA8	8516	genome.wustl.edu	37	10	15628600	15628600	+	Silent	SNP	C	C	T	rs145199076	by1000genomes	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	10	15628600	15628600	C	T	SNP	ITGA8	NM_003638.1	human	genbank	58_37c	-1	provisional	silent	c.2355	p.A785	0.924	HMMPfam_Integrin_alpha2,superfamily_SSF69179	HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF69179,superfamily_SSF69318	-	no_errors
LOC642236	642236	genome.wustl.edu	37	9	68430233	68430233	+	RNA	SNP	T	T	G	rs4296242	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	9	68430233	68430233	T	G	SNP	LOC642236	XR_041085.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
MLL3	58508	genome.wustl.edu	37	7	151896496	151896496	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	7	151896496	151896496	T	C	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	missense	c.4141	p.I1381V	0.927	NULL	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MORN5	254956	genome.wustl.edu	37	9	124936830	124936830	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	9	124936830	124936830	C	T	SNP	MORN5	NM_198469.2	human	genbank	58_37c	+1	validated	silent	c.363	p.Y121	0.977	superfamily_SSF82185	HMMPfam_MORN,HMMSmart_MORN,superfamily_SSF82185	-	no_errors
MOV10L1	54456	genome.wustl.edu	37	22	50553671	50553671	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	22	50553671	50553671	G	A	SNP	MOV10L1	NM_018995.2	human	genbank	58_37c	+1	reviewed	missense	c.1255	p.G419R	0.948	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
OGDHL	55753	genome.wustl.edu	37	10	50966465	50966465	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	10	50966465	50966465	G	A	SNP	OGDHL	NM_018245.2	human	genbank	58_37c	-1	validated	silent	c.174	p.A58	0.996	NULL	HMMPfam_E1_dh,HMMPfam_Transket_pyr,superfamily_SSF52518	-	no_errors
OR51A2	401667	genome.wustl.edu	37	11	4976683	4976683	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	11	4976683	4976683	G	A	SNP	OR51A2	NM_001004748.1	human	genbank	58_37c	-1	provisional	silent	c.261	p.F87	0.001	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR52E4	390081	genome.wustl.edu	37	11	5905807	5905807	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	11	5905807	5905807	C	T	SNP	OR52E4	NM_001005165.1	human	genbank	58_37c	+1	provisional	silent	c.285	p.S95	0.006	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCDHGB2	56103	genome.wustl.edu	37	5	140740551	140740551	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	5	140740551	140740551	T	C	SNP	PCDHGB2	NM_018923.2	human	genbank	58_37c	+1	reviewed	silent	c.849	p.N283	0.001	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PHACTR1	221692	genome.wustl.edu	37	6	13230284	13230286	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	6	13230284	13230286	AGG	-	DEL	PHACTR1	NM_030948.1	human	genbank	58_37c	+1	validated	in_frame_del	c.1250_1252	p.KV417in_frame_delI	1.000:1.000:1.000	NULL	HMMPfam_RPEL,HMMSmart_SM00707	-	no_errors
PPM1H	57460	genome.wustl.edu	37	12	63042385	63042385	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	12	63042385	63042385	G	A	SNP	PPM1H	NM_020700.1	human	genbank	58_37c	-1	validated	missense	c.1429	p.R477C	1.000	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	-	no_errors
PREX1	57580	genome.wustl.edu	37	20	47342884	47342884	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	20	47342884	47342884	C	A	SNP	PREX1	NM_020820.3	human	genbank	58_37c	-1	reviewed	missense	c.564	p.L188F	1.000	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_DEP,HMMSmart_SM00049,PatternScan_DH_1,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,superfamily_PH domain-like"	-	no_errors
PTEN	5728	genome.wustl.edu	37	10	89685293	89685298	+	In_Frame_Del	DEL	ACCATT	ACCATT	-	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	ACCATT	ACCATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	10	89685293	89685298	ACCATT	-	DEL	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	in_frame_del	c.188_193	p.HY64in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
SIN3B	23309	genome.wustl.edu	37	19	16962240	16962240	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	19	16962240	16962240	G	A	SNP	SIN3B	NM_015260.1	human	genbank	58_37c	+1	provisional	silent	c.744	p.P248	0.005	NULL	HMMPfam_PAH,superfamily_PAH2 domain,HMMPfam_HDAC_interact,HMMSmart_SM00761	-	no_errors
SLC6A4	6532	genome.wustl.edu	37	17	28545941	28545941	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	17	28545941	28545941	G	A	SNP	SLC6A4	NM_001045.4	human	genbank	58_37c	-1	reviewed	missense	c.352	p.L118F	1.000	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2,HMMPfam_5HT_transporter	-	no_errors
SORBS2	8470	genome.wustl.edu	37	4	186544158	186544158	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	4	186544158	186544158	A	T	SNP	SORBS2	NM_021069.4	human	genbank	58_37c	-1	reviewed	missense	c.2413	p.C805S	0.444	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Sorb,HMMSmart_SM00459,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7579343	7579351	+	In_Frame_Del	DEL	TGCAAGAAG	TGCAAGAAG	-	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	TGCAAGAAG	TGCAAGAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	17	7579343	7579351	TGCAAGAAG	-	DEL	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	in_frame_del	c.344_336	p.FLH113in_frame_del	0.930:0.938:0.948:0.998:1.000:1.000:1.000:0.999:0.805	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
VKORC1	79001	genome.wustl.edu	37	16	31104727	31104727	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01A-11D-A099-09	TCGA-A2-A0SV-10A-01W-A097-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d3206c6-0ca8-4b2b-a160-b1719217f9c7	db8da47e-0daa-4ebc-81fa-756dacf71ca7	16	31104727	31104727	G	A	SNP	VKORC1	ENST00000498155	human	ensembl	58_37c	-1	known	missense	c.286	p.R96W	0.840	NULL	NULL	-	no_errors
