Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
CCDC34	91057	genome.wustl.edu	37	11	27384449	27384466	+	In_Frame_Del	DEL	TCATCCACGTCTTCCTCA	TCATCCACGTCTTCCTCA	-	rs138931796	by1000genomes	TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	TCATCCACGTCTTCCTCA	TCATCCACGTCTTCCTCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	11	27384449	27384466	TCATCCACGTCTTCCTCA	-	DEL	CCDC34	NM_030771.1	human	genbank	58_37c	-1	validated	in_frame_del	c.293_276	p.DEEDVD92in_frame_del	0.006:0.005:0.003:0.005:0.006:0.002:0.000:0.000:0.000:0.001:0.003:0.000:0.001:0.005:0.003:0.002:0.002:0.002	NULL	NULL	-	no_errors
CDK5RAP2	55755	genome.wustl.edu	37	9	123210362	123210362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	9	123210362	123210362	G	A	SNP	CDK5RAP2	NM_018249.4	human	genbank	58_37c	-1	reviewed	missense	c.2836	p.R946W	0.008	NULL	HMMPfam_Microtub_assoc	-	no_errors
CLIP1	6249	genome.wustl.edu	37	12	122826098	122826098	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	12	122826098	122826098	C	G	SNP	CLIP1	NM_002956.2	human	genbank	58_37c	-1	validated	missense	c.1620	p.E540D	1.000	NULL	HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cap-Gly domain	-	no_errors
ENSG00000247905	0	genome.wustl.edu	37	17	36829498	36829498	+	RNA	SNP	A	A	C	novel	unknown	TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	17	36829498	36829498	A	C	SNP	C17orf96	NM_001130677.1	human	genbank	58_37c	-1	predicted	3_prime_untranslated_region	c.*111	NULL	0.022	-	-	-	no_errors
MAP2K5	5607	genome.wustl.edu	37	15	67873162	67873162	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	15	67873162	67873162	G	C	SNP	MAP2K5	NM_145160.1	human	genbank	58_37c	+1	reviewed	splice_site	c.322+1	e4+1	1.000	-	-	-	no_errors
MEFV	4210	genome.wustl.edu	37	16	3306365	3306365	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	16	3306365	3306365	G	T	SNP	MEFV	NM_000243.2	human	genbank	58_37c	-1	reviewed	silent	c.223	p.R75	0.351	HMMPfam_PAAD_DAPIN,superfamily_DEATH domain	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMPfam_PAAD_DAPIN,HMMSmart_SM00589,superfamily_DEATH domain,HMMSmart_SM00449,superfamily_B-box zinc-binding domain	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	rs121913284	unknown	TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	3	178921553	178921553	T	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1035	p.N345K	1.000	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RASGEF1C	255426	genome.wustl.edu	37	5	179564989	179564989	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	5	179564989	179564989	C	T	SNP	RASGEF1C	NM_175062.3	human	genbank	58_37c	-1	validated	missense	c.64	p.E22K	0.454	NULL	HMMPfam_RasGEF_N,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF	-	no_errors
SCN9A	6335	genome.wustl.edu	37	2	167099093	167099093	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	2	167099093	167099093	C	T	SNP	SCN9A	NM_002977.3	human	genbank	58_37c	-1	reviewed	silent	c.3513	p.R1171	0.995	HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SIPA1L3	23094	genome.wustl.edu	37	19	38655323	38655323	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	19	38655323	38655323	C	T	SNP	SIPA1L3	NM_015073.1	human	genbank	58_37c	+1	validated	missense	c.3985	p.P1329S	0.016	NULL	HMMPfam_Rap_GAP,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,superfamily_SSF111347	-	no_errors
SPEN	23013	genome.wustl.edu	37	1	16258660	16258661	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	1	16258660	16258661	CA	-	DEL	SPEN	NM_015001.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.5925_5926	p.K1976fs	0.124:0.296	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SPOC,superfamily_SPOC-like,superfamily_SSF54928	-	no_errors
THSD7A	221981	genome.wustl.edu	37	7	11509516	11509516	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	7	11509516	11509516	C	T	SNP	THSD7A	NM_015204.2	human	genbank	58_37c	-1	validated	silent	c.2358	p.S786	0.006	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	-	no_errors
TRPC5	7224	genome.wustl.edu	37	X	111155993	111155993	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	X	111155993	111155993	G	T	SNP	TRPC5	NM_012471.2	human	genbank	58_37c	-1	reviewed	missense	c.426	p.D142E	1.000	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,HMMPfam_TRP_2,PatternScan_RIBOSOMAL_S2_1	-	no_errors
ZNFX1	57169	genome.wustl.edu	37	20	47881273	47881273	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	20	47881273	47881273	G	T	SNP	ZNFX1	NM_021035.2	human	genbank	58_37c	-1	validated	missense	c.2131	p.L711I	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_zf-NF-X1,HMMSmart_SM00438,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
