Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PRDM16	63976	genome.wustl.edu	37	1	3301765	3301765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_022114.3	+1	reviewed	p.A163V	0.014	144	0%	43	37.2%	0	-	benign(0.273)	tolerated(0.1)	neutral(0.316)	HMMSmart_SM00317,superfamily_SET domain
ARHGEF16	27237	genome.wustl.edu	37	1	3380072	3380072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_014448.3	+1	reviewed	p.G142R	0.038	13	0%	14	35.7%	16	31.2%	benign(0.007)	tolerated(0.16)	neutral(0.059)	NULL
NPHP4	261734	genome.wustl.edu	37	1	5927852	5927852	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_015102.2	-1	reviewed	p.E1140	1.000	42	0%	24	50%	4	0%	-	-	-	NULL
RPL22	6146	ucsc.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000983.3	-1	reviewed	p.K15fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
ENO1	2023	genome.wustl.edu	37	1	8923374	8923384	+	Frame_Shift_Del	DEL	CCCAACCATTG	CCCAACCATTG	-	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	CCCAACCATTG	CCCAACCATTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001428.2	-1	reviewed	p.N363fs	1.000:1.000:1.000:1.000:0.982:1.000:1.000:0.942:0.999:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Enolase_C,superfamily_Enolase C-terminal domain-like
MFN2	9927	genome.wustl.edu	37	1	12064077	12064077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001127660.1	+1	reviewed	p.R397W	1.000	93	0%	45	44.4%	11	45.4%	probably_damaging(0.953)	tolerated(0.11)	deleterious(0.668)	NULL
CELA2B	51032	genome.wustl.edu	37	1	15808197	15808197	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000442979	+1	known	p.V97	0.000	7	0.000	53	0.453	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ZBTB17	7709	genome.wustl.edu	37	1	16269682	16269682	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003443.2	-1	validated	p.Q569*	1.000	370	0%	69	34.8%	30	46.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CLCNKA	1187	genome.wustl.edu	37	1	16355263	16355263	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_004070.3	+1	reviewed	p.V326fs	0.224	-	-	-	-	-	-	-	-	-	HMMPfam_Voltage_CLC,superfamily_Cl-channel_core
MST1P9	11223	genome.wustl.edu	37	1	17084262	17084262	+	RNA	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NR_002729.2	-1	validated	NULL	1.000	361	0%	92	12%	46	0%	-	-	-	-
PADI3	51702	genome.wustl.edu	37	1	17597567	17597567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_016233.2	+1	reviewed	p.R314K	0.984	104	0%	19	31.6%	0	-	benign(0)	tolerated(0.96)	-	HMMPfam_PAD,superfamily_SSF55909
IL28RA	163702	genome.wustl.edu	37	1	24495979	24495979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_170743.2	-1	reviewed	p.R99C	0.232	75	0%	25	48%	2	100%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Fibronectin type III
CEP85	64793	genome.wustl.edu	37	1	26595090	26595090	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000453146	+1	known	p.C160Y	0.921	53	0%	29	51.7%	2	50%	-	-	-	NULL
SDC3	9672	genome.wustl.edu	37	1	31349582	31349582	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_014654.3	-1	reviewed	p.A229	0.000	43	2.3%	26	38.5%	12	66.6%	-	-	-	HMMPfam_Syndecan
ZMYM6	9204	genome.wustl.edu	37	1	35476429	35476429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_007167.3	-1	validated	p.T424I	0.000	116	0%	59	33.9%	4	75%	benign(0.055)	tolerated(0.4)	neutral(0.019)	HMMPfam_zf-FCS
EIF2C3	192669	genome.wustl.edu	37	1	36520585	36520585	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_024852.2	+1	reviewed	p.D771E	1.000	215	0%	44	40.9%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Piwi,superfamily_RNaseH_fold
OSCP1	127700	genome.wustl.edu	37	1	36894053	36894053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_206837.2	-1	validated	p.M180I	0.000	166	0%	84	33.3%	8	25%	benign(0.001)	tolerated(0.29)	neutral(0.029)	HMMPfam_Oscp1
OXCT2	64064	genome.wustl.edu	37	1	40236234	40236234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_022120.1	-1	provisional	p.V232M	1.000	129	0%	28	25%	1	0%	possibly_damaging(0.691)	deleterious(0.01)	deleterious(0.653)	HMMPfam_CoA_trans,superfamily_SSF100950
PTPRF	5792	genome.wustl.edu	37	1	44085424	44085424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002840.3	+1	reviewed	p.R1669Q	1.000	193	0%	57	49.1%	133	44.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRF	5792	genome.wustl.edu	37	1	44086249	44086249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002840.3	+1	reviewed	p.R1788Q	1.000	182	0%	52	44.2%	175	50.2%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTCH2	8643	genome.wustl.edu	37	1	45288125	45288125	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003738.4	-1	reviewed	p.N1192H	0.013	44	0%	32	31.2%	1	100%	benign(0.051)	deleterious(0)	neutral(0.448)	NULL
ZYG11A	440590	genome.wustl.edu	37	1	53333279	53333279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000371528	+1	known	p.A487V	1.000	293	0%	95	44.2%	0	-	possibly_damaging(0.69)	deleterious(0.01)	deleterious(0.653)	superfamily_ARM repeat
YIPF1	54432	genome.wustl.edu	37	1	54332035	54332035	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018982.3	-1	provisional	p.Q223	1.000	37	0%	25	40%	24	29.1%	-	-	-	HMMPfam_Yip1
LRRIQ3	127255	genome.wustl.edu	37	1	74492527	74492527	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001105659.1	-1	provisional	p.D615	0.000	236	0%	159	38.4%	0	-	-	-	-	NULL
GBP3	2635	genome.wustl.edu	37	1	89474774	89474774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018284.2	-1	reviewed	p.E505D	0.492	386	0%	116	36.2%	10	30%	possibly_damaging(0.893)	deleterious(0.03)	deleterious(0.716)	HMMPfam_GBP_C,superfamily_GBP
CDC7	8317	genome.wustl.edu	37	1	91981353	91981353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001134419.1	+1	reviewed	p.R367H	0.976	69	0%	28	53.6%	1	0%	possibly_damaging(0.78)	tolerated(0.05)	deleterious(0.637)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C1orf88	128344	genome.wustl.edu	37	1	111893920	111893920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_181643.4	+1	validated	p.V183M	0.983	130	0%	40	55%	13	53.8%	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	NULL
WDR77	79084	genome.wustl.edu	37	1	111991285	111991285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_024102.2	-1	provisional	p.L86P	1.000	17	0%	19	36.8%	25	56%	possibly_damaging(0.91)	tolerated(0.13)	deleterious(0.615)	HMMSmart_WD40,superfamily_WD40_like
KCND3	3752	genome.wustl.edu	37	1	112524608	112524608	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_004980.3	-1	reviewed	p.A247	0.009	16	0%	13	38.5%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NRAS	4893	genome.wustl.edu	37	1	115258747	115258747	+	Missense_Mutation	SNP	C	C	T	rs121913237	byCluster	TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002524.3	-1	reviewed	p.G12D	1.000	278	0%	68	32.4%	4	50%	possibly_damaging(0.844)	deleterious(0)	deleterious(0.768)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
VANGL1	81839	genome.wustl.edu	37	1	116233851	116233851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_138959.2	+1	reviewed	p.R476W	0.802	140	0%	33	42.4%	7	14.2%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_Strabismus
ADAM30	11085	genome.wustl.edu	37	1	120437091	120437091	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_021794.2	-1	reviewed	p.C623	0.000	48	0%	27	55.6%	0	-	-	-	-	HMMSmart_SM00608
POLR3C	10623	genome.wustl.edu	37	1	145594076	145594076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_006468.6	-1	provisional	p.R496C	0.998	282	0%	51	43.1%	42	38%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
LOC100289061	100289061	genome.wustl.edu	37	1	150532694	150532694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	XM_002342133.1	-1	model	p.V7M	0.000	75	0%	19	42.1%	3	33.3%	-	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152285558	152285558	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002016.1	-1	reviewed	p.Q602*	0.000	421	0%	111	46.8%	0	-	-	-	-	HMMPfam_Filaggrin
SPRR2D	6703	genome.wustl.edu	37	1	153012800	153012800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_006945.4	-1	validated	p.C8Y	0.924	120	0%	31	54.8%	6	83.3%	unknown(0)	-	-	NULL
OR10J3	441911	genome.wustl.edu	37	1	159283582	159283582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001004467.1	-1	provisional	p.V290I	0.935	139	0%	29	62.1%	0	-	benign(0.004)	tolerated(0.42)	neutral(0.014)	NULL
MYOC	4653	genome.wustl.edu	37	1	171621178	171621178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000261.1	-1	reviewed	p.A192T	0.000	92	0%	28	42.9%	0	-	benign(0.028)	tolerated(0.19)	neutral(0.051)	NULL
TNR	7143	genome.wustl.edu	37	1	175375469	175375469	+	Missense_Mutation	SNP	C	C	T	rs2239819	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003285.2	-1	validated	p.A128T	0.018	308	0%	64	46.9%	0	-	unknown(0)	-	-	NULL
C1orf106	55765	genome.wustl.edu	37	1	200880686	200880686	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018265.2	+1	validated	p.A440	0.000	28	0%	19	57.9%	1	0%	-	-	-	NULL
KIF21B	23046	genome.wustl.edu	37	1	200969040	200969040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_017596.2	-1	provisional	p.E580K	0.993	185	0%	38	34.2%	2	50%	possibly_damaging(0.85)	tolerated(0.61)	neutral(0.331)	superfamily_WD40_like
PKP1	5317	genome.wustl.edu	37	1	201282490	201282490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000299.2	+1	reviewed	p.R168H	1.000	41	0%	27	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYBPH	4608	genome.wustl.edu	37	1	203140583	203140583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_004997.2	-1	validated	p.S241P	1.000	50	0%	20	25%	1	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
CDK18	5129	genome.wustl.edu	37	1	205496943	205496943	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_212503.2	+1	validated	p.R281	1.000	168	0%	40	37.5%	18	38.8%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
BATF3	55509	genome.wustl.edu	37	1	212870362	212870362	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018664.2	-1	reviewed	p.R46	1.000	249	0%	55	32.7%	4	25%	-	-	-	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1
RPS6KC1	26750	genome.wustl.edu	37	1	213414367	213414367	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_012424.3	+1	validated	p.C516	1.000	65	0%	31	38.7%	0	-	-	-	-	NULL
SNORA36B	677818	genome.wustl.edu	37	1	220374014	220374014	+	RNA	SNP	T	T	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NR_002994.2	-1	validated	NULL	1.000	93	0%	107	43%	0	-	-	-	-	-
GALNT2	2590	genome.wustl.edu	37	1	230410205	230410205	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_004481.3	+1	reviewed	p.T485	0.313	116	0%	33	24.2%	19	31.5%	-	-	-	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
PPPDE1	51029	genome.wustl.edu	37	1	244869075	244869075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_016076.3	+1	validated	p.R190H	1.000	26	0%	12	41.7%	6	83.3%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
NLRP3	114548	genome.wustl.edu	37	1	247607392	247607392	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001079821.2	+1	reviewed	p.K930Q	0.393	223	0%	35	45.7%	1	0%	possibly_damaging(0.492)	tolerated(0.22)	neutral(0.206)	HMMPfam_LRR_1,superfamily_SSF52047
OR11L1	391189	genome.wustl.edu	37	1	248005092	248005092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001001959.1	-1	provisional	p.C36Y	0.000	88	0%	39	25.6%	0	-	benign(0)	deleterious(0)	neutral(0.445)	superfamily_SSF81321
GEN1	348654	genome.wustl.edu	37	2	17962210	17962210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001130009.1	+1	validated	p.I577M	0.000	97	0%	35	48.6%	1	0%	benign(0.001)	tolerated(0.14)	neutral(0.249)	NULL
EPT1	85465	genome.wustl.edu	37	2	26596300	26596300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000407686	+1	known	p.H126Y	1.000	230	0%	105	45.7%	1	100%	benign(0.33)	tolerated(0.06)	neutral(0.426)	HMMPfam_CDP-OH_P_transf,PatternScan_CDP_ALCOHOL_P_TRANSF
SNX17	9784	genome.wustl.edu	37	2	27595542	27595542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_014748.2	+1	reviewed	p.L64P	1.000	149	0%	42	40.5%	31	32.2%	benign(0.09)	tolerated(0.07)	neutral(0.326)	HMMPfam_PX,HMMSmart_PX,superfamily_PX
ZNF513	130557	genome.wustl.edu	37	2	27601531	27601531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_144631.4	-1	validated	p.T201I	1.000	115	0%	44	43.2%	44	54.5%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	superfamily_C2H2 and C2HC zinc fingers
CRIM1	51232	genome.wustl.edu	37	2	36744484	36744484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_016441.1	+1	provisional	p.Q669K	1.000	132	0%	36	11.1%	3	0%	benign(0.025)	tolerated(1)	neutral(0.001)	NULL
HEATR5B	54497	genome.wustl.edu	37	2	37259837	37259837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_019024.1	-1	validated	p.A1099V	1.000	240	0%	61	47.5%	1	100%	benign(0)	tolerated(0.11)	neutral(0.272)	superfamily_ARM repeat
SPTBN1	6711	genome.wustl.edu	37	2	54864854	54864854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003128.2	+1	reviewed	p.R1258G	0.997	144	0%	66	50%	9	33.3%	benign(0.002)	tolerated(0.37)	neutral(0.019)	HMMSmart_SM00150,superfamily_Spectrin repeat
EML6	400954	genome.wustl.edu	37	2	55071206	55071206	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001039753.2	+1	validated	p.C290	1.000	175	0%	46	30.4%	0	-	-	-	-	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
ALMS1	7840	genome.wustl.edu	37	2	73717769	73717769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_015120.4	+1	reviewed	p.R2894C	0.465	88	0%	53	43.4%	4	50%	possibly_damaging(0.693)	deleterious(0)	deleterious(0.693)	NULL
DQX1	165545	genome.wustl.edu	37	2	74751333	74751333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_133637.2	-1	validated	p.A178V	1.000	71	0%	23	30.4%	0	-	benign(0.43)	deleterious(0)	deleterious(0.585)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD23	200539	genome.wustl.edu	37	2	97507923	97507923	+	Splice_Site	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_144994.7	-1	reviewed	e3-1	0.992	68	0%	21	42.9%	0	-	-	-	-	-
PDCL3	79031	genome.wustl.edu	37	2	101192915	101192915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_024065.4	+1	validated	p.R226H	0.401	152	0%	43	25.6%	73	54.7%	benign(0.032)	tolerated(0.13)	neutral(0.254)	HMMPfam_Phosducin
NPAS2	4862	genome.wustl.edu	37	2	101582229	101582229	+	Splice_Site	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002518.3	+1	reviewed	e9+1	1.000	70	0%	19	52.6%	0	-	-	-	-	-
ACOXL	55289	genome.wustl.edu	37	2	111753552	111753552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001142807.1	+1	validated	p.R418W	0.809	330	0%	133	45.1%	0	-	possibly_damaging(0.845)	deleterious(0.02)	deleterious(0.707)	HMMPfam_ACOX,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
FOXD4L1	200350	genome.wustl.edu	37	2	114257094	114257094	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_012184.4	+1	reviewed	p.T87	0.248	138	0%	46	41.3%	0	-	-	-	-	NULL
ENSG00000163075	0	genome.wustl.edu	37	2	120414025	120414025	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000443972	+1	known	p.T393I	0.820	118	0%	57	33.3%	0	-	-	-	-	NULL
CLASP1	23332	genome.wustl.edu	37	2	122122752	122122752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_015282.2	-1	validated	p.T1332M	1.000	106	0%	28	39.3%	6	50%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	superfamily_ARM repeat
BAZ2B	29994	genome.wustl.edu	37	2	160285739	160285739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_013450.2	-1	validated	p.R743C	0.997	109	0%	115	38.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain
GAD1	2571	genome.wustl.edu	37	2	171702112	171702112	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000817.2	+1	reviewed	p.V283G	1.000	173	0%	56	33.9%	123	57.7%	possibly_damaging(0.914)	deleterious(0)	deleterious(0.810)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
ZAK	51776	genome.wustl.edu	37	2	174128576	174128576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_016653.2	+1	reviewed	p.T552I	1.000	137	0%	64	51.6%	3	66.6%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
NDUFS1	4719	genome.wustl.edu	37	2	206994842	206994842	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_005006.5	-1	reviewed	p.L560M	1.000	69	0%	39	35.9%	20	35%	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	HMMPfam_Molybdopterin,superfamily_SSF53706
IGFBP2	3485	genome.wustl.edu	37	2	217528750	217528750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000597.2	+1	validated	p.R301W	1.000	50	0%	15	40%	243	30.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,superfamily_Thyroglobulin type-1 domain
FAM124B	79843	genome.wustl.edu	37	2	225266233	225266233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001122779.1	-1	validated	p.V85I	0.002	81	0%	19	57.9%	0	-	benign(0.01)	tolerated(0.36)	neutral(0.021)	NULL
COL4A3	1285	genome.wustl.edu	37	2	228159758	228159758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000091.3	+1	reviewed	p.A1166V	0.012	126	0%	66	34.8%	0	-	unknown(0)	tolerated(0.32)	-	HMMPfam_Collagen
SPHKAP	80309	genome.wustl.edu	37	2	228884688	228884688	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001142644.1	-1	validated	p.T294	0.000	326	0%	89	31.5%	0	-	-	-	-	NULL
SP110	3431	genome.wustl.edu	37	2	231067424	231067424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_080424.2	-1	reviewed	p.G307R	0.000	281	0%	73	43.8%	9	33.3%	benign(0.095)	deleterious(0.03)	neutral(0.371)	NULL
CAB39	51719	genome.wustl.edu	37	2	231624786	231624786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001130849.1	+1	validated	p.A24T	1.000	125	0%	66	33.3%	6	0%	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_Mo25,superfamily_ARM repeat
CHRND	1144	genome.wustl.edu	37	2	233393243	233393243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000751.1	+1	reviewed	p.C129Y	1.000	222	0%	50	44%	1	100%	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
OR6B2	389090	genome.wustl.edu	37	2	240969576	240969576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001005853.1	-1	provisional	p.R91C	0.000	184	0%	78	24.4%	0	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR35	2859	genome.wustl.edu	37	2	241570019	241570019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_005301.2	+1	provisional	p.R217H	0.148	32	0%	12	50%	71	57.7%	benign(0.004)	tolerated(0.27)	neutral(0.034)	HMMPfam_7tm_1,superfamily_SSF81321
CXXC11	285093	genome.wustl.edu	37	2	242814922	242814922	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_173821.2	+1	validated	p.L405	0.000	24	0.000	9	0.556	0	-	-	-	-	NULL
SRGAP3	9901	genome.wustl.edu	37	3	9027427	9027427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_014850.2	-1	validated	p.R1026C	1.000	61	0%	24	41.7%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GHRLOS	100126793	genome.wustl.edu	37	3	10335033	10335034	+	RNA	INS	-	-	CATG	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NR_004431.2	+1	validated	NULL	0.001:0.001	-	-	-	-	-	-	-	-	-	-
CAPN7	23473	genome.wustl.edu	37	3	15253637	15253637	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_014296.2	+1	reviewed	p.A43	1.000	101	0%	74	36.5%	1	100%	-	-	-	HMMPfam_MIT,HMMSmart_MIT
AZI2	64343	genome.wustl.edu	37	3	28365605	28365610	+	In_Frame_Del	DEL	AGTTTT	AGTTTT	-	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	AGTTTT	AGTTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_022461.3	-1	validated	p.KT368in_frame_del	0.453:0.381:0.382:0.590:0.998:0.999	-	-	-	-	-	-	-	-	-	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001098209.1	+1	reviewed	p.G34E	1.000	84	0%	25	32%	66	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FYCO1	79443	genome.wustl.edu	37	3	46007819	46007819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_024513.2	-1	validated	p.L1003I	0.756	146	0%	24	33.3%	4	25%	benign(0.41)	tolerated(1)	neutral(0.133)	NULL
BSN	8927	genome.wustl.edu	37	3	49698052	49698052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003458.3	+1	reviewed	p.R2925Q	1.000	16	0%	17	41.2%	0	-	unknown(0)	-	-	NULL
FAM208A	23272	genome.wustl.edu	37	3	56667871	56667871	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001112736.1	-1	validated	p.D983V	1.000	61	0%	33	51.5%	6	50%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
FHIT	2272	genome.wustl.edu	37	3	59999858	59999858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002012.2	-1	reviewed	p.R42W	0.995	112	0%	38	63.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HIT,superfamily_HIT-like
ATXN7	6314	genome.wustl.edu	37	3	63968093	63968093	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001128149.2	+1	reviewed	p.N328K	1.000	69	0%	33	60.6%	1	100%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	HMMPfam_SCA7
OR5H15	403274	genome.wustl.edu	37	3	97888359	97888359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001005515.1	+1	provisional	p.M272I	0.000	212	0%	66	53%	0	-	benign(0.024)	tolerated(0.17)	neutral(0.060)	HMMPfam_7tm_1,superfamily_SSF81321
STAG1	10274	genome.wustl.edu	37	3	136078053	136078053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_005862.2	-1	reviewed	p.R958H	1.000	153	0%	38	28.9%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PIK3CB	5291	genome.wustl.edu	37	3	138417835	138417835	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_006219.1	-1	provisional	p.R562*	1.000	118	0%	43	37.2%	1	0%	-	-	-	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
PRR23B	389151	genome.wustl.edu	37	3	138738768	138738768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001013650.2	-1	validated	p.A246T	0.004	17	0%	22	63.6%	0	-	benign(0.316)	tolerated(0.3)	neutral(0.128)	HMMPfam_DUF2476
ATR	545	ucsc.edu	37	3	142217557	142217557	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001184.3	-1	reviewed	p.R1814fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_FAT,superfamily_ARM repeat,superfamily_TPR-like
EIF2A	83939	genome.wustl.edu	37	3	150299425	150299425	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_032025.3	+1	validated	p.S506	0.152	96	0%	70	41.4%	85	34.1%	-	-	-	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164908548	164908548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_014926.2	-1	validated	p.A24V	1.000	153	0%	37	32.4%	0	-	benign(0.017)	deleterious(0.05)	neutral(0.346)	NULL
TNIK	23043	genome.wustl.edu	37	3	170789081	170789081	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_015028.2	-1	validated	p.I1160	1.000	164	0%	82	36.6%	0	-	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_006218.2	+1	reviewed	p.E542K	1.000	105	0%	69	31.9%	6	66.6%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
LRCH3	84859	genome.wustl.edu	37	3	197562693	197562693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_032773.2	+1	provisional	p.E417D	1.000	130	0%	51	31.4%	0	-	possibly_damaging(0.775)	deleterious(0.03)	deleterious(0.653)	superfamily_SSF52058
WHSC2	7469	genome.wustl.edu	37	4	1989663	1989663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_005663.3	-1	reviewed	p.R217W	0.967	36	0%	14	28.6%	23	39.1%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
CRMP1	1400	genome.wustl.edu	37	4	5853144	5853144	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001014809.1	-1	reviewed	p.S291	0.960	115	0%	61	37.7%	2	0%	-	-	-	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
BOD1L	259282	genome.wustl.edu	37	4	13615173	13615173	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_148894.2	-1	validated	p.T429	0.971	137	0%	34	55.9%	1	100%	-	-	-	superfamily_SSF81995
GABRA2	2555	genome.wustl.edu	37	4	46388111	46388111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000807.2	-1	reviewed	p.R56Q	1.000	97	0%	67	47.8%	0	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
POLR2B	5431	genome.wustl.edu	37	4	57871482	57871482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000938.1	+1	reviewed	p.R324I	1.000	150	0%	138	42%	11	63.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
UGT2B11	10720	genome.wustl.edu	37	4	69885594	69885594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000381096	-1	known	p.Y170C	0.291	213	0%	80	43.8%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
ENAM	10117	genome.wustl.edu	37	4	71510182	71510182	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_031889.2	+1	reviewed	p.D1013	0.326	85	0%	41	53.7%	0	-	-	-	-	NULL
PTPN13	5783	genome.wustl.edu	37	4	87622950	87622952	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_080685.2	+1	reviewed	p.E399in_frame_del	0.995:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NAP1L5	266812	genome.wustl.edu	37	4	89618760	89618760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_153757.2	-1	validated	p.G49V	0.000	76	0%	34	50%	4	0%	unknown(0)	deleterious(0.01)	-	NULL
ANK2	287	genome.wustl.edu	37	4	114286206	114286206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001148.4	+1	reviewed	p.V3634I	1.000	98	0%	26	46.2%	0	-	benign(0)	-	-	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
UGT8	7368	genome.wustl.edu	37	4	115544334	115544334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001128174.1	+1	validated	p.A100T	0.993	162	0%	71	33.8%	6	33.3%	possibly_damaging(0.915)	tolerated(0.17)	neutral(0.425)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
C4orf33	132321	genome.wustl.edu	37	4	130023850	130023850	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001099783.1	+1	validated	p.G29*	0.999	154	0%	70	50%	5	40%	-	-	-	NULL
MAML3	55534	genome.wustl.edu	37	4	140641335	140641335	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018717.4	-1	validated	p.Q848H	1.000	256	0%	61	44.3%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
HHIP	64399	genome.wustl.edu	37	4	145567961	145567961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_022475.1	+1	reviewed	p.P45L	1.000	113	0%	48	10.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Folate_rec
DDX60	55601	genome.wustl.edu	37	4	169138143	169138143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_017631.5	-1	validated	p.V1694I	0.989	187	0%	187	39.6%	8	50%	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	NULL
WDR17	116966	genome.wustl.edu	37	4	177049933	177049933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_170710.4	+1	reviewed	p.T303A	1.000	61	0%	71	40.8%	0	-	benign(0.08)	tolerated(0.32)	neutral(0.029)	superfamily_Amine_DH_B_like
LOC391722	391722	genome.wustl.edu	37	4	185220370	185220370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	XM_373042.2	-1	model	p.T349I	0.999	39	0%	30	33.3%	0	-	-	-	-	superfamily_EF-hand
AHRR	57491	genome.wustl.edu	37	5	434223	434223	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_020731.3	+1	reviewed	p.S478	0.002	34	0%	35	42.9%	0	-	-	-	-	NULL
TRIO	7204	genome.wustl.edu	37	5	14497079	14497079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_007118.2	+1	validated	p.G2658S	1.000	179	0%	83	42.2%	16	43.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYO10	4651	genome.wustl.edu	37	5	16673854	16673854	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_012334.2	-1	validated	p.T1703	0.430	244	0%	47	44.7%	21	33.3%	-	-	-	HMMPfam_RA,HMMSmart_B41
TARS	6897	genome.wustl.edu	37	5	33457509	33457509	+	Splice_Site	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_152295.3	+1	reviewed	e9+1	1.000	114	0%	79	45.6%	3	100%	-	-	-	-
RAD1	5810	genome.wustl.edu	37	5	34908277	34908279	+	RNA	DEL	TTT	TTT	-	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	TTT	TTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NR_026591.1	-1	reviewed	NULL	0.331:0.276:0.200	-	-	-	-	-	-	-	-	-	-
PIK3R1	5295	genome.wustl.edu	37	5	67589607	67589607	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_181523.1	+1	reviewed	p.Q457P	1.000	59	0%	110	46.4%	7	42.8%	benign(0.001)	tolerated(0.1)	neutral(0.286)	NULL
PAPD4	167153	genome.wustl.edu	37	5	78915882	78915882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001114393.1	+1	validated	p.A68D	0.076	32	0%	35	28.6%	2	50%	benign(0.014)	tolerated(0.09)	neutral(0.297)	NULL
RASA1	5921	genome.wustl.edu	37	5	86682659	86682659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002890.1	+1	reviewed	p.G955D	1.000	207	0.5%	112	39.3%	8	37.5%	probably_damaging(0.979)	tolerated(0.09)	deleterious(0.718)	HMMSmart_SM00323,superfamily_GTPase activation domain GAP
SNCAIP	9627	genome.wustl.edu	37	5	121758989	121758989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_005460.2	+1	reviewed	p.G186D	1.000	81	0%	21	47.6%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139908776	139908776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_020690.4	+1	reviewed	p.Q2082R	0.983	52	0%	29	44.8%	32	62.5%	benign(0.31)	tolerated(0.85)	neutral(0.097)	NULL
SLC35A4	113829	genome.wustl.edu	37	5	139947467	139947467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_080670.2	+1	provisional	p.G238V	0.040	62	0%	27	33.3%	60	46.6%	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	HMMPfam_Nuc_sug_transp
PCDHA4	56144	genome.wustl.edu	37	5	140188961	140188961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018907.2	+1	reviewed	p.G730D	0.229	55	0%	19	36.8%	6	83.3%	possibly_damaging(0.787)	deleterious(0.04)	deleterious(0.643)	NULL
PCDHA10	56139	genome.wustl.edu	37	5	140235957	140235957	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018901.2	+1	reviewed	p.I108	0.982	67	0%	24	54.2%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140347035	140347035	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018899.5	+1	reviewed	p.T228	0.207	31	0.000	7	0.714	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB1	29930	genome.wustl.edu	37	5	140431693	140431693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_013340.2	+1	reviewed	p.T213M	0.979	28	0%	15	66.7%	0	-	probably_damaging(0.964)	tolerated(0.07)	deleterious(0.726)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
NR3C1	2908	genome.wustl.edu	37	5	142780089	142780089	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001024094.1	-1	reviewed	p.Q106*	1.000	89	0%	20	35%	0	-	-	-	-	HMMPfam_GCR
PPARGC1B	133522	genome.wustl.edu	37	5	149212510	149212510	+	Missense_Mutation	SNP	C	C	T	rs11959820	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_133263.3	+1	reviewed	p.R292C	0.999	20	0%	15	53.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP10B	23120	genome.wustl.edu	37	5	160114970	160114970	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_025153.2	-1	validated	p.Q38*	0.015	179	0%	46	28.3%	0	-	-	-	-	NULL
GABRG2	2566	genome.wustl.edu	37	5	161576155	161576155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_198903.2	+1	reviewed	p.A362T	1.000	341	0%	89	48.3%	0	-	possibly_damaging(0.84)	deleterious(0)	deleterious(0.766)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
CCDC99	54908	genome.wustl.edu	37	5	169021585	169021585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_017785.4	+1	validated	p.R264Q	1.000	187	0%	83	49.4%	4	0%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
STK10	6793	genome.wustl.edu	37	5	171491817	171491817	+	Splice_Site	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_005990.3	-1	reviewed	e13-1	1.000	256	0%	41	48.8%	0	-	-	-	-	-
UNC5A	90249	genome.wustl.edu	37	5	176306789	176306789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_133369.2	+1	validated	p.H811Y	1.000	44	0%	19	31.6%	0	-	possibly_damaging(0.878)	deleterious(0.01)	deleterious(0.748)	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
FGFR4	2264	genome.wustl.edu	37	5	176517136	176517137	+	Frame_Shift_Ins	INS	-	-	GTGT	rs111413202		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000377207	+1	known	p.V27fs	0.008:0.012	-	-	-	-	-	-	-	-	-	NULL
ZFP62	643836	genome.wustl.edu	37	5	180276178	180276178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_152283.4	-1	validated	p.T713A	0.580	146	0%	58	43.1%	15	20%	possibly_damaging(0.95)	tolerated(0.51)	neutral(0.403)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MBOAT1	154141	genome.wustl.edu	37	6	20124709	20124709	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001080480.1	-1	provisional	p.P279	0.899	108	0%	43	37.2%	30	40%	-	-	-	HMMPfam_MBOAT
FAM65B	9750	genome.wustl.edu	37	6	24825503	24825503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_014722.2	-1	validated	p.V961A	1.000	135	0%	36	52.8%	0	-	benign(0.106)	tolerated(0.84)	neutral(0.009)	superfamily_ARM repeat
POM121L2	94026	genome.wustl.edu	37	6	27279814	27279814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000444565	-1	known	p.R46C	0.319	35	0%	22	40.9%	0	-	possibly_damaging(0.683)	deleterious(0.03)	deleterious(0.608)	NULL
GABBR1	2550	genome.wustl.edu	37	6	29571043	29571043	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000485026	-1	known	p.R256C	0.001	58	0%	224	12.5%	22	59%	-	-	-	NULL
RPS10	6204	genome.wustl.edu	37	6	34392483	34392483	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001014.3	-1	reviewed	p.R95	0.998	56	0%	21	28.6%	3350	42.6%	-	-	-	HMMPfam_S10_plectin
TULP1	7287	genome.wustl.edu	37	6	35477071	35477071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003322.3	-1	reviewed	p.R246M	0.021	203	0%	103	38.8%	0	-	benign(0.075)	deleterious(0)	neutral(0.450)	NULL
PEX6	5190	genome.wustl.edu	37	6	42934349	42934349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000287.3	-1	reviewed	p.A670T	0.430	118	0%	60	43.3%	22	59%	probably_damaging(0.954)	tolerated(0.06)	deleterious(0.720)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CUL7	9820	genome.wustl.edu	37	6	43015922	43015922	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_014780.4	-1	reviewed	p.C711	0.873	54	0%	20	40%	3	66.6%	-	-	-	NULL
ABCC10	89845	genome.wustl.edu	37	6	43400551	43400551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_033450.2	+1	reviewed	p.Y235C	0.991	57	0%	24	45.8%	1	0%	benign(0.004)	deleterious(0.01)	neutral(0.406)	superfamily_ABC_TM_1
IL17A	3605	genome.wustl.edu	37	6	52054069	52054069	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002190.2	+1	reviewed	p.P149	0.005	61	0%	31	51.6%	0	-	-	-	-	superfamily_Cystine-knot cytokines
AKD1	221264	genome.wustl.edu	37	6	109965876	109965876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001145128.2	-1	provisional	p.H259Y	0.962	158	0%	59	49.2%	2	0%	possibly_damaging(0.936)	tolerated(0.68)	neutral(0.384)	superfamily_P-loop containing nucleoside triphosphate hydrolases
VNN2	8875	genome.wustl.edu	37	6	133078952	133078952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_004665.2	-1	reviewed	p.D24G	0.006	157	0%	67	40.3%	0	-	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	superfamily_Ntlse/CNhydtse
ALDH8A1	64577	genome.wustl.edu	37	6	135239890	135239890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_022568.2	-1	reviewed	p.T376M	1.000	90	0%	21	47.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldedh,superfamily_ALDH-like
STXBP5	134957	genome.wustl.edu	37	6	147527114	147527114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001127715.1	+1	reviewed	p.R53H	1.000	298	0%	49	46.9%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00320,superfamily_WD40 repeat-like
MYCT1	80177	genome.wustl.edu	37	6	153043372	153043372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_025107.2	+1	validated	p.A231V	1.000	97	0%	27	48.1%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
FNDC1	84624	genome.wustl.edu	37	6	159687201	159687201	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000329629	+1	known	p.V1686M	0.997	234	0%	29	34.5%	0	-	-	-	-	NULL
AMPH	273	genome.wustl.edu	37	7	38433787	38433787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001635.2	-1	reviewed	p.A476T	0.017	67	0%	23	43.5%	0	-	benign(0)	tolerated(0.84)	neutral(0.001)	NULL
VPS41	27072	genome.wustl.edu	37	7	38816314	38816314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_014396.3	-1	reviewed	p.V283I	0.993	113	0%	81	32.1%	1	0%	benign(0)	tolerated(0.25)	neutral(0.037)	superfamily_WD40 repeat-like
NUDCD3	23386	genome.wustl.edu	37	7	44467293	44467293	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_015332.3	-1	reviewed	p.E173	0.999	151	0%	40	55%	10	30%	-	-	-	NULL
SUN3	256979	genome.wustl.edu	37	7	48046892	48046892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001030019.1	-1	validated	p.R121H	0.011	171	0%	65	43.1%	0	-	benign(0.196)	deleterious(0.03)	neutral(0.383)	NULL
VWC2	375567	genome.wustl.edu	37	7	49842320	49842320	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_198570.3	+1	reviewed	p.E237V	1.000	156	0%	39	43.6%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1
DYNC1I1	1780	genome.wustl.edu	37	7	95434099	95434099	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_004411.4	+1	validated	p.Q20fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100334930	100334930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003386.1	+1	reviewed	p.A191T	0.788	61	1.6%	20	45%	0	-	possibly_damaging(0.438)	-	-	HMMPfam_MAM,HMMSmart_SM00137
ZNHIT1	10467	genome.wustl.edu	37	7	100865999	100865999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_006349.2	+1	validated	p.A46V	0.951	44	0%	26	23.1%	187	9.6%	possibly_damaging(0.81)	deleterious(0.01)	deleterious(0.711)	NULL
TES	26136	genome.wustl.edu	37	7	115897448	115897448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_015641.2	+1	reviewed	p.C393Y	1.000	115	0%	20	50%	46	47.8%	probably_damaging(0.998)	tolerated(0.3)	deleterious(0.503)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
KCND2	3751	genome.wustl.edu	37	7	119915447	119915447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_012281.2	+1	reviewed	p.R254H	1.000	165	0%	50	46%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ZC3HC1	51530	genome.wustl.edu	37	7	129658541	129658541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_016478.3	-1	validated	p.R491Q	1.000	121	0%	51	47.1%	9	22.2%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
HIPK2	28996	genome.wustl.edu	37	7	139281547	139281547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000263551	-1	known	p.P878L	1.000	107	0%	68	11.8%	6	16.6%	possibly_damaging(0.767)	deleterious(0.03)	deleterious(0.649)	NULL
ZDHHC2	51201	genome.wustl.edu	37	8	17065473	17065473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_016353.4	+1	validated	p.G201D	1.000	209	0%	80	42.5%	12	16.6%	benign(0.001)	tolerated(0.41)	neutral(0.015)	NULL
EXTL3	2137	genome.wustl.edu	37	8	28573797	28573797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001440.2	+1	provisional	p.C74Y	1.000	178	0%	44	18.2%	4	0%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
UNC5D	137970	genome.wustl.edu	37	8	35402007	35402007	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000453357	+1	known	p.A14	0.018	272	0%	83	21.7%	0	-	-	-	-	NULL
EYA1	2138	genome.wustl.edu	37	8	72128976	72128976	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000503.4	-1	reviewed	p.R437	1.000	259	0%	79	48.1%	0	-	-	-	-	HMMPfam_Hydrolase
ZFHX4	79776	genome.wustl.edu	37	8	77618149	77618149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_024721.4	+1	validated	p.P609L	1.000	129	0%	27	63%	0	-	possibly_damaging(0.671)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77766843	77766843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_024721.4	+1	validated	p.Q2517H	0.837	93	0%	61	41%	0	-	probably_damaging(0.989)	-	-	NULL
RNF19A	25897	genome.wustl.edu	37	8	101276971	101276971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_015435.3	-1	reviewed	p.R412W	1.000	280	0%	63	39.7%	11	45.4%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SNX31	169166	genome.wustl.edu	37	8	101589289	101589289	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_152628.3	-1	validated	p.P395	0.009	359	0%	169	44.4%	0	-	-	-	-	NULL
EBAG9	9166	genome.wustl.edu	37	8	110567111	110567111	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_004215.3	+1	reviewed	p.Q106*	1.000	112	0%	57	43.9%	6	0%	-	-	-	NULL
ADCY8	114	genome.wustl.edu	37	8	132051717	132051717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001115.2	-1	reviewed	p.P288L	1.000	39	0%	15	33.3%	0	-	probably_damaging(0.958)	tolerated(0.07)	deleterious(0.721)	NULL
TSNARE1	203062	genome.wustl.edu	37	8	143395763	143395763	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_145003.3	-1	validated	p.A371	0.000	141	0%	24	37.5%	8	50%	-	-	-	superfamily_t-snare
KIFC2	90990	genome.wustl.edu	37	8	145697600	145697600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_145754.2	+1	provisional	p.R522Q	0.007	47	0%	26	30.8%	63	52.3%	benign(0.057)	tolerated(0.16)	neutral(0.063)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
RECQL4	9401	genome.wustl.edu	37	8	145737428	145737428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000428558	-1	known	p.P1087S	0.980	26	0%	11	36.4%	31	22.5%	-	-	-	NULL
HAUS6	54801	genome.wustl.edu	37	9	19070265	19070265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_017645.3	-1	provisional	p.C443Y	0.000	183	0%	53	26.4%	3	66.6%	possibly_damaging(0.685)	deleterious(0.04)	deleterious(0.593)	NULL
ACER2	340485	genome.wustl.edu	37	9	19446224	19446224	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000380376	+1	known	p.Q133	0.010	98	0%	63	34.9%	0	-	-	-	-	HMMPfam_aPHC
C9orf72	203228	genome.wustl.edu	37	9	27556685	27556685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018325.2	-1	validated	p.H322R	1.000	142	0%	25	56%	7	57.1%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
FAM22F	54754	genome.wustl.edu	37	9	97082832	97082832	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000434357	-1	known	p.P242S	0.004	59	0%	28	46.4%	0	-	-	-	-	NULL
COL15A1	1306	genome.wustl.edu	37	9	101765842	101765842	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001855.3	+1	reviewed	p.T391	0.019	54	0%	16	37.5%	3	0%	-	-	-	NULL
ZNF462	58499	genome.wustl.edu	37	9	109688997	109688997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_021224.4	+1	validated	p.P935L	1.000	64	0%	37	56.8%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24
C9orf91	203197	genome.wustl.edu	37	9	117390507	117390507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_153045.3	+1	validated	p.V151I	0.756	235	0%	53	50.9%	3	33.3%	benign(0)	tolerated(0.93)	-	NULL
CNTRL	11064	genome.wustl.edu	37	9	123919812	123919812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_007018.4	+1	reviewed	p.A1477V	1.000	125	0%	65	33.8%	2	50%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	NULL
OLFML2A	169611	genome.wustl.edu	37	9	127572353	127572353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_182487.2	+1	validated	p.D541N	1.000	23	0%	11	36.4%	2	0%	possibly_damaging(0.759)	tolerated(0.21)	neutral(0.325)	HMMPfam_OLF,HMMSmart_SM00284
C9orf50	375759	genome.wustl.edu	37	9	132382053	132382053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_199350.3	-1	validated	p.R189W	0.003	291	0%	71	45.1%	1	100%	possibly_damaging(0.727)	deleterious(0)	deleterious(0.709)	NULL
ADAMTS13	11093	genome.wustl.edu	37	9	136314932	136314932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_139025.3	+1	reviewed	p.V964M	0.342	162	0%	46	45.7%	10	40%	possibly_damaging(0.808)	deleterious(0.03)	deleterious(0.668)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
TPRN	286262	genome.wustl.edu	37	9	140093604	140093604	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_173691.3	-1	validated	p.A459	0.136	71	0%	19	47.4%	29	55.1%	-	-	-	NULL
EXD3	54932	genome.wustl.edu	37	9	140246632	140246632	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_017820.3	-1	validated	p.R353	0.004	135	0%	32	34.4%	26	26.9%	-	-	-	NULL
CACNA1B	774	genome.wustl.edu	37	9	141015951	141015951	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000718.2	+1	validated	p.L2174	0.940	49	0%	22	36.4%	0	-	-	-	-	NULL
ADARB2	105	genome.wustl.edu	37	10	1405759	1405759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018702.2	-1	reviewed	p.A181T	1.000	23	0%	10	80%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_dsrm,HMMSmart_DSRM,superfamily_SSF54768
AKR1C3	8644	genome.wustl.edu	37	10	5138656	5138656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003739.4	+1	reviewed	p.R47C	0.987	185	0%	46	63%	2	0%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase,PatternScan_ALDOKETO_REDUCTASE_1
ITIH2	3698	genome.wustl.edu	37	10	7776938	7776938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002216.2	+1	validated	p.Q614R	1.000	74	0%	26	50%	0	-	benign(0.113)	tolerated(0.29)	neutral(0.038)	NULL
MKX	283078	genome.wustl.edu	37	10	28024186	28024186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_173576.2	-1	validated	p.R156W	0.998	170	0%	31	38.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNA2	1763	genome.wustl.edu	37	10	70190218	70190218	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001080449.1	-1	provisional	p.L814H	0.559	140	0%	81	32.1%	2	50%	benign(0.002)	tolerated(0.08)	neutral(0.300)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LRIT1	26103	genome.wustl.edu	37	10	85992166	85992166	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_015613.2	-1	validated	p.Y463	0.478	42	0%	20	45%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
PTEN	5728	genome.wustl.edu	37	10	89692773	89692773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000371953	+1	known	p.A86V	1.000	216	0%	120	46.7%	7	42.8%	benign(0.009)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89720817	89720819	+	In_Frame_Del	DEL	ATG	ATG	-	rs121913291		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000371953	+1	known	p.D324in_frame_del	1.000:0.996:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PI4K2A	55361	genome.wustl.edu	37	10	99416723	99416723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018425.2	+1	provisional	p.R305H	1.000	106	0%	39	41%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3_PI4_kinase
LOXL4	84171	genome.wustl.edu	37	10	100020778	100020778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_032211.6	-1	reviewed	p.R188Q	1.000	75	0%	51	37.3%	0	-	probably_damaging(0.986)	tolerated(0.34)	neutral(0.458)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
PKD2L1	9033	genome.wustl.edu	37	10	102057239	102057239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_016112.2	-1	reviewed	p.R286W	0.337	55	0%	34	29.4%	0	-	probably_damaging(0.985)	deleterious(0.02)	deleterious(0.815)	HMMPfam_PKD_channel
RBM20	282996	genome.wustl.edu	37	10	112581400	112581400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001134363.1	+1	reviewed	p.R1008Q	0.995	113	0%	45	60%	0	-	benign(0.066)	deleterious(0.01)	neutral(0.410)	NULL
NHLRC2	374354	genome.wustl.edu	37	10	115661458	115661458	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_198514.2	+1	provisional	p.A391	0.997	109	0%	38	31.6%	2	0%	-	-	-	superfamily_NHL repeat
SEC23IP	11196	genome.wustl.edu	37	10	121691658	121691661	+	Frame_Shift_Del	DEL	TCTC	TCTC	-	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	TCTC	TCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_007190.2	+1	reviewed	p.S864fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DDHD
EBF3	253738	genome.wustl.edu	37	10	131639151	131639151	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000440978	-1	known	p.A68T	1.000	89	0%	49	46.9%	0	-	-	-	-	NULL
KNDC1	85442	genome.wustl.edu	37	10	135038274	135038274	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_152643.6	+1	validated	p.S1710	1.000	76	0%	27	44.4%	0	-	-	-	-	HMMSmart_SM00147,superfamily_Ras GEF
LOC100294349	100294349	genome.wustl.edu	37	11	418560	418560	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	XM_002347179.1	-1	model	p.P146L	0.011	50	2%	22	54.5%	57	45.6%	-	-	-	NULL
PNPLA2	57104	genome.wustl.edu	37	11	823570	823570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_020376.2	+1	provisional	p.R247H	1.000	42	0%	12	33.3%	103	44.6%	benign(0.025)	tolerated(0.3)	neutral(0.030)	NULL
MUC5B	727897	genome.wustl.edu	37	11	1279591	1279591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002458.1	+1	validated	p.F5532L	0.048	86	0%	19	42.1%	149	65.7%	unknown(0)	-	-	HMMPfam_VWC,HMMSmart_SM00214
CTSD	1509	genome.wustl.edu	37	11	1778755	1778755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001909.3	-1	reviewed	p.A168V	0.947	70	0%	40	17.5%	303	2.3%	possibly_damaging(0.701)	tolerated(0.07)	deleterious(0.571)	HMMPfam_Asp,superfamily_Pept_Aspartic
SLC22A18AS	5003	genome.wustl.edu	37	11	2909707	2909707	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_007105.2	-1	validated	p.G155	0.018	121	0%	17	58.8%	13	23%	-	-	-	NULL
CHRNA10	57053	genome.wustl.edu	37	11	3688639	3688639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_020402.2	-1	provisional	p.V240M	1.000	8	0.000	10	0.800	0	-	possibly_damaging(0.952)	deleterious(0.03)	deleterious(0.760)	superfamily_Neu_channel_TM
OR51E1	143503	genome.wustl.edu	37	11	4674410	4674410	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_152430.3	+1	validated	p.S218	0.425	389	0%	69	50.7%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MPPED2	744	genome.wustl.edu	37	11	30435853	30435853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001584.2	-1	reviewed	p.V230M	1.000	188	0%	73	41.1%	6	66.6%	possibly_damaging(0.63)	tolerated(0.11)	deleterious(0.492)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
TTC17	55761	genome.wustl.edu	37	11	43419565	43419565	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018259.5	+1	validated	p.H320	1.000	215	0%	40	37.5%	7	42.8%	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
SLC35C1	55343	genome.wustl.edu	37	11	45832557	45832557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018389.4	+1	reviewed	p.R256C	0.000	57	0%	28	39.3%	26	50%	benign(0.009)	tolerated(0.18)	neutral(0.057)	HMMPfam_TPT
MADD	8567	genome.wustl.edu	37	11	47311499	47311499	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003682.3	+1	reviewed	p.V966	1.000	53	0%	30	43.3%	6	33.3%	-	-	-	NULL
OR5M1	390168	genome.wustl.edu	37	11	56380663	56380663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001004740.1	-1	provisional	p.A106T	0.028	223	0%	78	42.3%	0	-	benign(0.017)	tolerated(0.61)	neutral(0.005)	HMMPfam_7tm_1,superfamily_SSF81321
OR5AR1	219493	genome.wustl.edu	37	11	56431513	56431513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001004730.1	+1	provisional	p.M118V	1.000	238	0%	52	48.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
TMX2	51075	genome.wustl.edu	37	11	57480182	57480182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_015959.2	+1	validated	p.L31P	0.998	121	0%	25	16%	15	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
PATL1	219988	genome.wustl.edu	37	11	59410433	59410433	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_152716.2	-1	validated	p.R657*	1.000	156	0%	52	36.5%	7	14.2%	-	-	-	NULL
INTS5	80789	genome.wustl.edu	37	11	62417239	62417239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_030628.1	-1	provisional	p.P105S	0.999	136	0%	39	41%	10	40%	benign(0.075)	tolerated(0.12)	neutral(0.266)	NULL
FERMT3	83706	genome.wustl.edu	37	11	63986815	63986815	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_178443.2	+1	reviewed	p.V293	1.000	40	0.000	9	0.444	1	0%	-	-	-	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
SIPA1	6494	genome.wustl.edu	37	11	65409720	65409720	+	Splice_Site	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_006747.3	+1	reviewed	e2-1	1.000	51	0%	34	50%	0	-	-	-	-	-
SPTBN2	6712	genome.wustl.edu	37	11	66476404	66476404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_006946.2	-1	reviewed	p.R387H	0.960	107	0%	32	31.2%	1	0%	benign(0.161)	tolerated(0.2)	neutral(0.064)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
KRTAP5-7	440050	genome.wustl.edu	37	11	71238460	71238460	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001012503.1	+1	validated	p.P38	0.685	121	0%	51	45.1%	0	-	-	-	-	PatternScan_MOLYBDOPTERIN_PROK_1
LOC220077	220077	genome.wustl.edu	37	11	71961996	71961996	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	XR_017002.2	-1	model	NULL	0.301	8	0.000	17	0.529	0	-	-	-	-	-
PRCP	5547	genome.wustl.edu	37	11	82560221	82560221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_199418.2	-1	reviewed	p.C285Y	1.000	105	1%	34	14.7%	40	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_S28
DYNC2H1	79659	genome.wustl.edu	37	11	103157038	103157038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001080463.1	+1	reviewed	p.R3656C	0.999	177	0%	84	36.9%	0	-	possibly_damaging(0.836)	tolerated(0.05)	deleterious(0.665)	HMMPfam_Dynein_heavy
ZC3H12C	85463	genome.wustl.edu	37	11	110036165	110036165	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_033390.1	+1	validated	p.D785	0.004	77	0%	29	31%	1	0%	-	-	-	NULL
RDX	5962	genome.wustl.edu	37	11	110108241	110108241	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002906.3	-1	reviewed	p.D409	0.997	246	0.4%	83	47%	5	40%	-	-	-	HMMPfam_ERM
TRIM29	23650	genome.wustl.edu	37	11	119986095	119986095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_012101.3	-1	reviewed	p.S552N	0.986	83	0%	27	40.7%	27	51.8%	possibly_damaging(0.778)	tolerated(0.15)	deleterious(0.532)	NULL
OR8G2	26492	genome.wustl.edu	37	11	124095979	124095979	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001007249.1	+1	provisional	p.L194	0.001	140	0.7%	35	25.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TBRG1	84897	genome.wustl.edu	37	11	124495566	124495566	+	Splice_Site	SNP	G	G	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_032811.2	+1	validated	e3-1	1.000	67	0%	16	50%	6	16.6%	-	-	-	-
ENO2	2026	genome.wustl.edu	37	12	7025849	7025849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001975.2	+1	reviewed	p.V66M	1.000	120	0%	41	43.9%	59	45.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Enolase_N,superfamily_Enolase N-terminal domain-like
PEX5	5830	genome.wustl.edu	37	12	7361181	7361181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001131023.1	+1	reviewed	p.A452V	1.000	37	0%	19	26.3%	11	54.5%	benign(0.173)	tolerated(0.25)	neutral(0.053)	superfamily_SSF48452
CD163L1	283316	genome.wustl.edu	37	12	7556284	7556284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_174941.4	-1	reviewed	p.S419G	0.000	147	0%	41	51.2%	0	-	possibly_damaging(0.602)	tolerated(0.54)	neutral(0.216)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
GYS2	2998	genome.wustl.edu	37	12	21733406	21733406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_021957.3	-1	reviewed	p.E58G	1.000	306	0%	94	48.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Glycogen_syn
ENSG00000250314	0	genome.wustl.edu	37	12	63397865	63397865	+	RNA	SNP	C	C	A	rs189635358	by1000genomes	TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000514535	-1	known	NULL	1.000	21	0%	17	23.5%	0	-	-	-	-	-
RAB3IP	117177	genome.wustl.edu	37	12	70189072	70189072	+	Missense_Mutation	SNP	G	G	A	rs61758771		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_175623.2	+1	validated	p.G295D	1.000	106	0%	36	55.6%	5	80%	possibly_damaging(0.574)	deleterious(0.01)	deleterious(0.603)	NULL
UBE2N	7334	genome.wustl.edu	37	12	93804512	93804512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003348.3	-1	reviewed	p.T139I	1.000	150	0%	50	42%	59	27.1%	benign(0.002)	tolerated(0.08)	neutral(0.300)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
FICD	11153	genome.wustl.edu	37	12	108912863	108912863	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_007076.2	+1	validated	p.Q330*	1.000	66	1.5%	33	66.7%	4	25%	-	-	-	NULL
SELPLG	6404	genome.wustl.edu	37	12	109017196	109017196	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003006.3	-1	reviewed	p.I286M	0.000	180	0%	55	52.7%	5	0%	possibly_damaging(0.906)	tolerated(0.16)	neutral(0.419)	NULL
LOC100287839	100287839	genome.wustl.edu	37	12	112616970	112616970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	XM_002343213.1	+1	model	p.G512D	0.000	89	0%	31	35.5%	0	-	-	-	-	NULL
IQCD	115811	genome.wustl.edu	37	12	113633449	113633449	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_138451.1	-1	provisional	p.G325	0.993	222	0.9%	66	48.5%	1	0%	-	-	-	NULL
KDM2B	84678	genome.wustl.edu	37	12	121986793	121986793	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_032590.4	-1	reviewed	p.P224	0.521	324	0%	73	46.6%	1	100%	-	-	-	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
HPD	3242	genome.wustl.edu	37	12	122281717	122281718	+	Frame_Shift_Del	DEL	CT	CT	-	rs142252243	by1000genomes	TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002150.2	-1	reviewed	p.G285fs	1.000:0.977	-	-	-	-	-	-	-	-	-	HMMPfam_Glyoxalase,superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
DHX37	57647	genome.wustl.edu	37	12	125451347	125451347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_032656.2	-1	reviewed	p.R528W	0.000	79	0%	22	40.9%	4	75%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	superfamily_SSF52540
TMEM132D	121256	genome.wustl.edu	37	12	130184852	130184852	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_133448.2	-1	validated	p.D157	0.012	33	0%	21	61.9%	0	-	-	-	-	NULL
DDX51	317781	genome.wustl.edu	37	12	132626120	132626120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_175066.3	-1	validated	p.V343M	0.657	39	0%	22	54.5%	15	33.3%	benign(0.057)	deleterious(0)	neutral(0.448)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
LOC729535	729535	genome.wustl.edu	37	13	19271507	19271507	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	XM_001130539.3	+1	model	p.S133	0.015	52	0%	16	31.2%	28	0%	-	-	-	NULL
LATS2	26524	genome.wustl.edu	37	13	21562178	21562178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_014572.2	-1	reviewed	p.R581C	0.922	231	0%	44	38.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SKA3	221150	genome.wustl.edu	37	13	21742376	21742376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000314759	-1	known	p.R165Q	0.992	142	0%	128	50.8%	4	75%	probably_damaging(0.993)	tolerated(0.32)	deleterious(0.474)	NULL
SACS	26278	genome.wustl.edu	37	13	23915307	23915307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_014363.4	-1	reviewed	p.L903P	1.000	213	0%	75	30.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPG20	23111	genome.wustl.edu	37	13	36909466	36909466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001142294.1	-1	reviewed	p.A168T	0.549	49	0%	19	47.4%	3	33.3%	benign(0.15)	tolerated(1)	neutral(0.013)	NULL
PCDH9	5101	genome.wustl.edu	37	13	67800011	67800011	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_203487.2	-1	reviewed	p.A854	0.888	107	0%	37	51.4%	0	-	-	-	-	HMMPfam_Protocadherin
SLITRK1	114798	genome.wustl.edu	37	13	84455392	84455392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_052910.1	-1	reviewed	p.A84V	1.000	94	0%	40	40%	0	-	benign(0.354)	tolerated(0.14)	neutral(0.361)	superfamily_SSF52058
UGGT2	55757	genome.wustl.edu	37	13	96636102	96636102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_020121.3	-1	validated	p.A350T	1.000	77	0%	202	42.1%	0	-	benign(0.054)	tolerated(0.65)	neutral(0.007)	NULL
FAM155A	728215	genome.wustl.edu	37	13	108518528	108518528	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001080396.2	-1	validated	p.G139	1.000	10	0%	12	41.7%	0	-	-	-	-	NULL
LRP10	26020	genome.wustl.edu	37	14	23346230	23346230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_014045.3	+1	validated	p.R546C	1.000	51	0%	17	47.1%	97	40.2%	unknown(0)	deleterious(0)	-	NULL
DCAF11	80344	genome.wustl.edu	37	14	24590580	24590580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_025230.4	+1	reviewed	p.R418Q	1.000	86	0%	22	40.9%	52	51.9%	benign(0.011)	deleterious(0.04)	neutral(0.349)	superfamily_WD40 repeat-like
CLEC14A	161198	genome.wustl.edu	37	14	38723830	38723830	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_175060.1	-1	provisional	p.V466	0.000	54	0%	17	41.2%	17	0%	-	-	-	NULL
FANCM	57697	genome.wustl.edu	37	14	45606335	45606335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_020937.2	+1	reviewed	p.P191H	1.000	131	0%	37	37.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
BMP4	652	genome.wustl.edu	37	14	54416754	54416754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001202.3	-1	reviewed	p.R408H	1.000	124	0.8%	31	38.7%	81	20.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
ARID4A	5926	genome.wustl.edu	37	14	58814485	58814485	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002892.3	+1	reviewed	p.A431	0.000	78	0%	109	41.3%	2	50%	-	-	-	NULL
ADAM20	8748	genome.wustl.edu	37	14	70991181	70991181	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003814.4	-1	reviewed	p.L148	0.018	81	0%	43	51.2%	0	-	-	-	-	HMMPfam_Pep_M12B_propep
COQ6	51004	genome.wustl.edu	37	14	74425874	74425876	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_182476.1	+1	validated	p.N245in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_FAD_binding_3,superfamily_SSF51905
LTBP2	4053	genome.wustl.edu	37	14	74976053	74976053	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000428.2	-1	reviewed	p.C1097	0.004	34	0%	22	45.5%	7	0%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
STON2	85439	genome.wustl.edu	37	14	81837470	81837470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_033104.2	-1	provisional	p.P145S	1.000	87	0%	39	43.6%	0	-	possibly_damaging(0.477)	deleterious(0.04)	deleterious(0.506)	NULL
GALC	2581	genome.wustl.edu	37	14	88434714	88434714	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000153.2	-1	reviewed	p.I291	0.999	94	0%	42	47.6%	1	100%	-	-	-	HMMPfam_Glyco_hydro_59,superfamily_(Trans)glycosidases
SPATA7	55812	genome.wustl.edu	37	14	88904611	88904611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018418.4	+1	reviewed	p.K549E	0.025	66	0%	21	52.4%	20	40%	possibly_damaging(0.69)	tolerated(0.12)	deleterious(0.508)	NULL
FOXN3	1112	genome.wustl.edu	37	14	89878337	89878337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001085471.1	-1	reviewed	p.V162L	1.000	64	0%	45	40%	1	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	"HMMPfam_Fork_head,HMMSmart_SM00339,PatternScan_FORK_HEAD_2,superfamily_""Winged helix"" DNA-binding domain"
FOXN3	1112	genome.wustl.edu	37	14	89878602	89878602	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001085471.1	-1	reviewed	p.L73	0.992	84	0%	28	28.6%	3	33.3%	-	-	-	NULL
MOAP1	64112	genome.wustl.edu	37	14	93650485	93650485	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_022151.4	-1	reviewed	p.I35fs	0.005	-	-	-	-	-	-	-	-	-	NULL
BEGAIN	57596	genome.wustl.edu	37	14	101010248	101010248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_020836.3	-1	validated	p.N100D	1.000	112	0%	12	58.3%	0	-	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	NULL
TMEM121	80757	genome.wustl.edu	37	14	105995394	105995394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_025268.2	+1	provisional	p.A75T	1.000	106	0%	15	60%	1	0%	possibly_damaging(0.465)	deleterious(0.01)	deleterious(0.558)	NULL
ATP10A	57194	genome.wustl.edu	37	15	25963467	25963467	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_024490.3	-1	reviewed	p.R481	0.228	41	0.000	8	0.500	0	-	-	-	-	superfamily_SSF56784
APBA2	321	genome.wustl.edu	37	15	29346841	29346841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_005503.3	+1	reviewed	p.H252Y	1.000	30	0%	28	32.1%	4	0%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
FAM189A1	23359	genome.wustl.edu	37	15	29428601	29428601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_015307.1	-1	validated	p.E299K	1.000	42	0%	14	35.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
TJP1	7082	genome.wustl.edu	37	15	30026577	30026577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003257.3	-1	validated	p.V473I	1.000	171	0%	88	29.5%	3	66.6%	possibly_damaging(0.889)	tolerated(0.19)	neutral(0.399)	superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
FAM98B	283742	genome.wustl.edu	37	15	38757590	38757590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_173611.2	+1	validated	p.C113Y	1.000	68	0%	77	44.2%	9	11.1%	probably_damaging(0.958)	tolerated(0.08)	deleterious(0.702)	HMMPfam_DUF2465
THBS1	7057	genome.wustl.edu	37	15	39885831	39885831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003246.2	+1	reviewed	p.R1077W	1.000	44	0%	16	75%	23	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_C,superfamily_Concanavalin A-like lectins/glucanases
STARD9	57519	genome.wustl.edu	37	15	42978899	42978899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	XM_001129482.3	+1	model	p.A1622V	0.035	84	0%	30	46.7%	0	-	benign(0)	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42984001	42984001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	XM_001129482.3	+1	model	p.M3323L	0.000	107	0%	47	31.9%	2	0%	benign(0)	-	-	NULL
UBR1	197131	genome.wustl.edu	37	15	43352006	43352006	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_174916.2	-1	reviewed	p.V293	1.000	78	0%	42	28.6%	2	0%	-	-	-	HMMPfam_ClpS,superfamily_ClpS-like
LOC100287308	100287308	genome.wustl.edu	37	15	65385487	65385487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	XM_002343349.1	-1	model	p.H140R	0.980	16	0.000	7	0.571	7	57.1%	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	NULL
C15orf59	388135	genome.wustl.edu	37	15	74032683	74032683	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001039614.1	-1	predicted	p.R153*	0.937	33	0%	18	44.4%	13	38.4%	-	-	-	NULL
LINGO1	84894	genome.wustl.edu	37	15	77907452	77907452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_032808.5	-1	validated	p.T266M	1.000	183	0%	119	40.3%	22	22.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,superfamily_L domain-like
KIAA1024	23251	genome.wustl.edu	37	15	79750301	79750301	+	Silent	SNP	C	C	A	rs186514185	by1000genomes	TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_015206.2	+1	validated	p.G604	0.003	44	0%	19	52.6%	0	-	-	-	-	NULL
HAPLN3	145864	genome.wustl.edu	37	15	89422404	89422404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_178232.2	-1	reviewed	p.S197F	0.998	43	0%	19	42.1%	67	52.2%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,superfamily_C-type lectin-like
CHTF18	63922	genome.wustl.edu	37	16	847075	847075	+	Missense_Mutation	SNP	G	G	A	rs143075525	by1000genomes	TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_022092.2	+1	validated	p.A906T	0.001	27	0%	22	22.7%	32	21.8%	benign(0.02)	tolerated(0.38)	neutral(0.019)	NULL
SSTR5	6755	genome.wustl.edu	37	16	1129320	1129320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001053.3	+1	reviewed	p.R151H	1.000	18	0.000	5	1.000	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SLC9A3R2	9351	genome.wustl.edu	37	16	2087920	2087920	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001130012.1	+1	validated	p.R317*	0.002	60	0%	21	28.6%	178	38.7%	-	-	-	HMMPfam_EBP50_C-term
TIGD7	91151	genome.wustl.edu	37	16	3349601	3349601	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_033208.2	-1	validated	p.C338	1.000	100	0%	72	43.1%	4	0%	-	-	-	HMMPfam_DDE
ZNF597	146434	genome.wustl.edu	37	16	3487047	3487047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_152457.1	-1	provisional	p.S218G	0.044	140	0%	53	35.8%	1	100%	benign(0)	tolerated(1)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CDR2	1039	genome.wustl.edu	37	16	22358366	22358366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001802.1	-1	validated	p.I429V	1.000	239	0%	109	45%	6	66.6%	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	NULL
ENSG00000196585	0	genome.wustl.edu	37	16	28425446	28425446	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000357646	+1	known	p.A141	0.678	57	1.8%	22	90.9%	0	-	-	-	-	HMMPfam_CDC37_C
ASPHD1	253982	genome.wustl.edu	37	16	29913155	29913155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_181718.3	+1	validated	p.G288D	1.000	9	0.000	14	0.429	1	0%	possibly_damaging(0.905)	deleterious(0.01)	deleterious(0.765)	HMMPfam_Asp_Arg_Hydrox
ITGAL	3683	genome.wustl.edu	37	16	30518050	30518050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002209.2	+1	reviewed	p.R794H	0.494	139	0%	40	42.5%	1	0%	benign(0.057)	tolerated(0.17)	neutral(0.062)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
STX4	6810	genome.wustl.edu	37	16	31045645	31045648	+	Frame_Shift_Del	DEL	GAGT	GAGT	-	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	GAGT	GAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_004604.3	+1	provisional	p.S78fs	0.997:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Syntaxin,HMMSmart_SynN,superfamily_t-snare
SIAH1	6477	genome.wustl.edu	37	16	48396114	48396114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001006610.1	-1	reviewed	p.R107W	1.000	114	0%	59	32.2%	33	39.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57850
SALL1	6299	genome.wustl.edu	37	16	51174792	51174792	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002968.2	-1	reviewed	p.F447	1.000	73	0%	27	48.1%	11	54.5%	-	-	-	NULL
SLC9A5	6553	genome.wustl.edu	37	16	67289688	67289688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_004594.2	+1	validated	p.A256T	1.000	61	0%	10	50%	0	-	benign(0.289)	deleterious(0.03)	neutral(0.454)	HMMPfam_Na_H_Exchanger
AP1G1	164	genome.wustl.edu	37	16	71779137	71779137	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001030007.1	-1	reviewed	p.I640V	1.000	168	0%	59	39%	11	18.1%	benign(0)	tolerated(0.76)	neutral(0.001)	NULL
FBXO31	79791	genome.wustl.edu	37	16	87376495	87376495	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_024735.3	-1	validated	p.G240	0.004	82	0%	26	15.4%	5	20%	-	-	-	NULL
MVD	4597	genome.wustl.edu	37	16	88718977	88718977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002461.1	-1	reviewed	p.A387T	0.000	41	0%	11	54.5%	43	41.8%	benign(0)	tolerated(0.41)	neutral(0.015)	superfamily_SSF55060
P2RX5	5026	genome.wustl.edu	37	17	3591942	3591942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002561.2	-1	reviewed	p.V289I	0.012	157	0%	56	39.3%	0	-	benign(0.003)	tolerated(0.46)	neutral(0.012)	HMMPfam_P2X_receptor
ZFP3	124961	genome.wustl.edu	37	17	4995135	4995135	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_153018.2	+1	validated	p.V112	0.000	53	0%	42	52.4%	0	-	-	-	-	NULL
GPS2	2874	genome.wustl.edu	37	17	7216092	7216092	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_004489.4	-1	reviewed	p.R323*	0.038	337	0%	63	47.6%	203	53.6%	-	-	-	NULL
PLSCR3	57048	genome.wustl.edu	37	17	7294081	7294081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_020360.2	-1	provisional	p.R235C	1.000	85	0%	40	45%	47	44.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Scramblase
RAI1	10743	genome.wustl.edu	37	17	17697869	17697869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_030665.3	+1	reviewed	p.R536H	0.990	18	0%	25	48%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LOC645139	645139	genome.wustl.edu	37	17	18553673	18553673	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	XM_928169.3	+1	model	p.A95	0.869	27	0%	35	45.7%	0	-	-	-	-	NULL
RPL23A	6147	genome.wustl.edu	37	17	27047820	27047820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000984.5	+1	reviewed	p.R41C	1.000	107	0%	57	40.4%	976	47.7%	benign(0.306)	deleterious(0.02)	deleterious(0.479)	HMMPfam_Ribosomal_L23eN
SSH2	85464	genome.wustl.edu	37	17	27975222	27975222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_033389.2	-1	reviewed	p.T429I	1.000	213	0%	38	39.5%	0	-	benign(0.039)	tolerated(0.29)	neutral(0.031)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
PEX12	5193	genome.wustl.edu	37	17	33904281	33904281	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000286.2	-1	reviewed	p.W152*	0.997	82	0%	25	56%	0	-	-	-	-	HMMPfam_Pex2_Pex12
KRT33A	3883	genome.wustl.edu	37	17	39506982	39506982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_004138.2	-1	reviewed	p.R13H	1.000	56	0%	20	50%	0	-	probably_damaging(0.994)	tolerated(0.12)	deleterious(0.713)	NULL
EZH1	2145	genome.wustl.edu	37	17	40855799	40855799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001991.3	-1	validated	p.R686Q	1.000	252	0%	75	42.7%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
G6PC3	92579	genome.wustl.edu	37	17	42153355	42153355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_138387.3	+1	reviewed	p.P329S	1.000	76	0%	26	46.2%	295	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAPT	4137	genome.wustl.edu	37	17	44039764	44039764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001123066.3	+1	validated	p.G21W	0.970	56	0%	42	11.9%	0	-	possibly_damaging(0.55)	deleterious(0.01)	deleterious(0.593)	NULL
ITGB3	3690	genome.wustl.edu	37	17	45368422	45368422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000212.2	+1	reviewed	p.K410E	1.000	129	0%	38	44.7%	2	0%	possibly_damaging(0.704)	deleterious(0.01)	deleterious(0.659)	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_Integrin domains
KPNB1	3837	genome.wustl.edu	37	17	45738523	45738524	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000290158	+1	known	p.Q227fs	0.997:1.000	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
HOXB13	10481	genome.wustl.edu	37	17	46804246	46804246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_006361.5	-1	reviewed	p.S254N	1.000	135	0%	30	33.3%	13	100%	benign(0.028)	tolerated(1)	neutral(0.002)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
PHB	5245	genome.wustl.edu	37	17	47489169	47489169	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002634.2	-1	reviewed	p.R41*	1.000	130	0%	35	48.6%	78	6.4%	-	-	-	HMMPfam_Band_7,HMMSmart_SM00244
ITGA3	3675	genome.wustl.edu	37	17	48154118	48154118	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000505306	+1	known	p.G665	0.647	20	0%	16	56.2%	0	-	-	-	-	NULL
ACE	1636	genome.wustl.edu	37	17	61557756	61557756	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000789.2	+1	reviewed	p.D238	0.987	137	0%	38	55.3%	8	0%	-	-	-	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
SMARCD2	6603	genome.wustl.edu	37	17	61911344	61911344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001098426.1	-1	reviewed	p.R369H	1.000	45	0%	67	37.3%	79	48.1%	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	HMMPfam_SWIB,superfamily_MDM2
DNAI2	64446	genome.wustl.edu	37	17	72306268	72306268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_023036.4	+1	reviewed	p.T487I	0.939	29	0%	14	35.7%	0	-	benign(0.253)	tolerated(0.44)	neutral(0.038)	superfamily_WD40 repeat-like
KIF19	124602	genome.wustl.edu	37	17	72350995	72350995	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_153209.3	+1	validated	p.C927	0.000	72	0%	40	42.5%	0	-	-	-	-	NULL
RBFOX3	146713	genome.wustl.edu	37	17	77102862	77102862	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001082575.1	-1	validated	p.D77	0.888	122	0%	40	37.5%	0	-	-	-	-	NULL
SLC38A10	124565	genome.wustl.edu	37	17	79220084	79220084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001037984.1	-1	validated	p.F878L	0.000	43	0%	15	40%	101	42.5%	benign(0.156)	tolerated(0.38)	neutral(0.032)	NULL
ZNF750	79755	genome.wustl.edu	37	17	80789038	80789038	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_024702.2	-1	reviewed	p.Y431	0.716	52	0%	35	48.6%	1	100%	-	-	-	NULL
PTPRM	5797	genome.wustl.edu	37	18	8406145	8406145	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001105244.1	+1	reviewed	p.Y1461	1.000	208	0%	50	10%	49	12.2%	-	-	-	HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
DSC1	1823	genome.wustl.edu	37	18	28720188	28720188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_024421.2	-1	reviewed	p.A446V	0.035	99	0%	28	42.9%	0	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
LOXHD1	125336	genome.wustl.edu	37	18	44057536	44057536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001145473.2	-1	reviewed	p.N480D	1.000	37	0%	11	45.5%	0	-	probably_damaging(1)	tolerated(0.81)	deleterious(0.500)	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
LOXHD1	125336	genome.wustl.edu	37	18	44057659	44057659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001145472.2	-1	reviewed	p.R1089W	1.000	104	0%	24	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
MIER2	54531	genome.wustl.edu	37	19	326549	326549	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_017550.1	-1	provisional	p.S181	0.007	107	0%	43	39.5%	11	36.3%	-	-	-	NULL
PLIN4	729359	genome.wustl.edu	37	19	4510590	4510590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001080400.1	-1	provisional	p.A1114T	0.000	99	0%	20	55%	1	0%	benign(0)	tolerated(1)	-	NULL
PTPRS	5802	genome.wustl.edu	37	19	5212060	5212060	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002850.3	-1	reviewed	p.P1657	0.029	94	0%	10	40%	67	35.8%	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
ENSG00000182315	0	genome.wustl.edu	37	19	7056433	7056433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000333843	-1	known	p.R176Q	0.000	171	0%	40	22.5%	0	-	benign(0.033)	tolerated(0.27)	neutral(0.035)	NULL
CAMSAP3	57662	genome.wustl.edu	37	19	7675461	7675461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001080429.2	+1	validated	p.L314Q	0.912	82	0%	25	36%	9	22.2%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Calponin-homology domain CH-domain
PDE4A	5141	genome.wustl.edu	37	19	10577963	10577963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001111307.1	+1	validated	p.A776V	0.030	93	0%	27	37%	11	0%	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
RNASEH2A	10535	genome.wustl.edu	37	19	12918094	12918094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_006397.2	+1	reviewed	p.A92T	1.000	307	0%	61	37.7%	43	44.1%	possibly_damaging(0.451)	tolerated(0.08)	neutral(0.448)	HMMPfam_RNase_HII,superfamily_Ribonuclease H-like
FARSA	2193	genome.wustl.edu	37	19	13035049	13035049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_004461.2	-1	validated	p.S435L	1.000	77	0%	30	36.7%	97	46.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_2d,superfamily_Class II aaRS and biotin synthetases
USHBP1	83878	genome.wustl.edu	37	19	17369154	17369154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_031941.3	-1	validated	p.R363W	0.000	63	0%	16	37.5%	2	0%	benign(0.003)	deleterious(0.05)	neutral(0.345)	HMMPfam_MCC-bdg_PDZ
SSBP4	170463	genome.wustl.edu	37	19	18542222	18542222	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_032627.3	+1	validated	p.H143	0.001	13	0.000	8	0.500	16	50%	-	-	-	HMMPfam_SSDP
TSHZ3	57616	genome.wustl.edu	37	19	31769199	31769199	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_020856.2	-1	validated	p.I500	1.000	94	0%	50	12%	0	-	-	-	-	NULL
CEP89	84902	genome.wustl.edu	37	19	33392149	33392149	+	Splice_Site	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_032816.3	-1	validated	e15+2	0.992	222	0%	73	19.2%	0	-	-	-	-	-
ZNF792	126375	genome.wustl.edu	37	19	35449833	35449833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_175872.4	-1	validated	p.P309L	0.772	233	0%	50	34%	0	-	possibly_damaging(0.798)	tolerated(0.3)	neutral(0.329)	superfamily_C2H2 and C2HC zinc fingers
RYR1	6261	genome.wustl.edu	37	19	38985197	38985197	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_000540.2	+1	reviewed	p.G2160	1.000	42	0%	10	40%	0	-	-	-	-	HMMPfam_RYDR_ITPR
MAP3K10	4294	genome.wustl.edu	37	19	40698397	40698397	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002446.3	+1	reviewed	p.Q153	1.000	37	0%	11	54.5%	3	0%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
SERTAD1	29950	genome.wustl.edu	37	19	40929250	40929250	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_013376.3	-1	validated	p.V68	1.000	40	0%	11	63.6%	31	25.8%	-	-	-	HMMPfam_SERTA
MEGF8	1954	genome.wustl.edu	37	19	42879871	42879871	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001410.2	+1	validated	p.D2427	0.926	28	0%	15	53.3%	5	60%	-	-	-	NULL
ZNF226	7769	genome.wustl.edu	37	19	44669961	44669961	+	Splice_Site	SNP	G	G	T	rs193253315	by1000genomes	TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001032372.1	+1	validated	e0+1	0.003	4	0.000	21	0.333	0	-	-	-	-	-
DMPK	1760	genome.wustl.edu	37	19	46280758	46280758	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001081563.1	-1	reviewed	p.L335	1.000	30	0%	10	40%	26	65.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RUVBL2	10856	genome.wustl.edu	37	19	49514334	49514334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_006666.1	+1	reviewed	p.A289V	0.998	54	0%	27	48.1%	139	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_TIP49,superfamily_SSF52540
SLC17A7	57030	genome.wustl.edu	37	19	49937873	49937873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_020309.3	-1	reviewed	p.T208M	1.000	92	0%	35	48.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
TMC4	147798	genome.wustl.edu	37	19	54668293	54668293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001145303.1	-1	validated	p.R336W	0.993	44	0%	35	57.1%	65	49.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TMC4	147798	genome.wustl.edu	37	19	54675816	54675816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001145303.1	-1	validated	p.S45N	0.995	56	0%	16	37.5%	23	30.4%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
LILRB2	10288	genome.wustl.edu	37	19	54780712	54780712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_005874.3	-1	reviewed	p.L478F	0.115	227	0%	65	41.5%	4	0%	benign(0.011)	tolerated(0.67)	neutral(0.003)	NULL
VN1R1	57191	genome.wustl.edu	37	19	57967254	57967254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_020633.2	-1	reviewed	p.A201T	0.000	175	0%	110	40.9%	1	0%	benign(0.001)	tolerated(0.58)	neutral(0.005)	superfamily_Family A G protein-coupled receptor-like
SYNDIG1	79953	genome.wustl.edu	37	20	24524088	24524088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_024893.1	+1	provisional	p.R119W	0.997	27	0%	16	56.2%	2	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
HCK	3055	genome.wustl.edu	37	20	30661571	30661571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002110.3	+1	reviewed	p.H93Q	0.995	132	0%	28	32.1%	2	0%	possibly_damaging(0.93)	tolerated(0.35)	neutral(0.397)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
MAPRE1	22919	genome.wustl.edu	37	20	31421661	31421661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_012325.2	+1	reviewed	p.V87A	1.000	186	0%	96	36.5%	19	36.8%	possibly_damaging(0.858)	deleterious(0)	deleterious(0.776)	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain
RPN2	6185	genome.wustl.edu	37	20	35856957	35856957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_002951.3	+1	reviewed	p.F435S	0.973	91	0%	31	54.8%	253	47%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ribophorin_II
ZMYND8	23613	genome.wustl.edu	37	20	45839458	45839458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_183047.1	-1	reviewed	p.S1172N	0.901	305	0%	93	31.2%	50	44%	benign(0.121)	deleterious(0)	neutral(0.454)	NULL
NFATC2	4773	genome.wustl.edu	37	20	50140049	50140049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_173091.2	-1	reviewed	p.R244H	1.000	18	0%	14	28.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BCAS1	8537	genome.wustl.edu	37	20	52645179	52645179	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003657.2	-1	reviewed	p.A159P	0.028	138	0%	31	35.5%	0	-	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	NULL
CTCFL	140690	genome.wustl.edu	37	20	56087667	56087667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_080618.2	-1	reviewed	p.C491Y	1.000	90	0%	14	35.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DIDO1	11083	genome.wustl.edu	37	20	61525431	61525431	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_033081.1	-1	reviewed	p.P896	0.000	160	0%	44	56.8%	5	40%	-	-	-	NULL
COL20A1	57642	genome.wustl.edu	37	20	61948007	61948007	+	Missense_Mutation	SNP	C	C	T	rs139560899	by1000genomes	TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_020882.2	+1	validated	p.T876M	0.810	51	0%	25	40%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMSmart_SM00210
ARFRP1	10139	genome.wustl.edu	37	20	62331871	62331871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003224.3	-1	reviewed	p.R177H	0.980	61	0%	26	34.6%	44	43.1%	probably_damaging(0.995)	tolerated(0.22)	deleterious(0.499)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
KRTAP27-1	643812	genome.wustl.edu	37	21	31709534	31709534	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001077711.1	-1	provisional	p.F151	0.135	100	0%	29	37.9%	0	-	-	-	-	HMMPfam_PMG
DNMT3L	29947	genome.wustl.edu	37	21	45674582	45674582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_013369.2	-1	reviewed	p.T204M	0.000	116	0%	42	47.6%	0	-	benign(0.003)	tolerated(0.1)	neutral(0.286)	NULL
MCM3AP	8888	genome.wustl.edu	37	21	47704793	47704793	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003906.3	-1	reviewed	p.N136	0.000	42	0%	32	37.5%	1	100%	-	-	-	NULL
CCT8L2	150160	genome.wustl.edu	37	22	17073119	17073119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_014406.4	-1	validated	p.V108M	0.630	82	0%	22	31.8%	0	-	possibly_damaging(0.762)	deleterious(0)	deleterious(0.727)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
C22orf25	128989	genome.wustl.edu	37	22	20024560	20024560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000401833	+1	known	p.A41V	0.000	31	0%	48	62.5%	1	0%	possibly_damaging(0.507)	deleterious(0)	deleterious(0.614)	NULL
CRKL	1399	genome.wustl.edu	37	22	21288426	21288426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_005207.3	+1	reviewed	p.G224V	1.000	176	0%	38	47.4%	5	40%	possibly_damaging(0.631)	tolerated(0.31)	neutral(0.247)	superfamily_SH3-domain
IGLV3-16	28799	genome.wustl.edu	37	22	23089942	23089943	+	Frame_Shift_Del	DEL	CT	CT	-	rs5844518	byCluster;by1000genomes	TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000390311	+1	known	p.C14fs	0.818:0.656	-	-	-	-	-	-	-	-	-	NULL
ZNF70	7621	genome.wustl.edu	37	22	24086754	24086754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_021916.2	-1	provisional	p.G192R	0.998	105	0%	43	37.2%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF57667
TFIP11	24144	genome.wustl.edu	37	22	26892743	26892743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001008697.1	-1	validated	p.V517M	0.948	134	0%	39	61.5%	18	27.7%	possibly_damaging(0.658)	tolerated(0.13)	deleterious(0.485)	HMMPfam_TFP11
TTLL1	25809	genome.wustl.edu	37	22	43465830	43465830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_012263.4	-1	validated	p.R45Q	1.000	233	0%	66	47%	8	62.5%	probably_damaging(0.979)	tolerated(0.07)	deleterious(0.741)	NULL
EFCAB6	64800	genome.wustl.edu	37	22	43972280	43972280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_022785.2	-1	validated	p.T1106M	0.002	72	0%	51	31.4%	1	100%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	superfamily_EF-hand
CELSR1	9620	genome.wustl.edu	37	22	46860121	46860121	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000454637	-1	known	p.R597H	0.062	55	0%	11	45.5%	1	100%	-	-	-	NULL
PANX2	56666	genome.wustl.edu	37	22	50617568	50617568	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_052839.3	+1	reviewed	p.Y632	0.987	42	0%	33	39.4%	2	50%	-	-	-	NULL
ENSG00000210082	0	genome.wustl.edu	37	MT	2304	2304	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	ENST00000387347	+1	known	NULL	NULL	24	0%	53	39.6%	8037	45.8%	-	-	-	-
ZBED1	9189	genome.wustl.edu	37	X	2407560	2407560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_004729.3	-1	reviewed	p.L401M	0.997	94	0%	17	58.8%	11	18.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TLR8	51311	genome.wustl.edu	37	X	12938142	12938142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_138636.4	+1	reviewed	p.A328V	0.732	98	0%	42	47.6%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_LRR_1,superfamily_SSF52047
EGFL6	25975	genome.wustl.edu	37	X	13621502	13621502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_015507.3	+1	reviewed	p.C156Y	1.000	157	0%	42	38.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00181,superfamily_Growth factor receptor domain
MOSPD2	158747	genome.wustl.edu	37	X	14921086	14921086	+	Splice_Site	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_152581.3	+1	validated	e7-2	1.000	288	0%	319	42.3%	0	-	-	-	-	-
CNKSR2	22866	genome.wustl.edu	37	X	21619469	21619469	+	Splice_Site	SNP	T	T	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_014927.3	+1	reviewed	e18+2	1.000	49	0%	110	44.5%	0	-	-	-	-	-
POLA1	5422	genome.wustl.edu	37	X	24732781	24732781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_016937.3	+1	reviewed	p.A147T	0.007	147	0%	88	36.4%	1	0%	benign(0)	tolerated(0.9)	-	NULL
USP9X	8239	genome.wustl.edu	37	X	41077684	41077684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001039590.2	+1	reviewed	p.H2090R	1.000	299	0%	113	18.6%	25	0%	benign(0.002)	tolerated(0.81)	neutral(0.001)	NULL
DUSP21	63904	genome.wustl.edu	37	X	44703600	44703600	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_022076.3	+1	reviewed	p.T74	0.001	195	0.5%	45	53.3%	0	-	-	-	-	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
ARAF	369	genome.wustl.edu	37	X	47426708	47426708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001654.3	+1	reviewed	p.T318M	0.975	186	0%	66	37.9%	23	91.3%	benign(0.154)	deleterious(0)	neutral(0.458)	superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
OTUD6A	139562	genome.wustl.edu	37	X	69282994	69282994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_207320.1	+1	provisional	p.C207Y	0.998	44	0%	15	60%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OTU,superfamily_SSF54001
MAGEE2	139599	genome.wustl.edu	37	X	75004797	75004797	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_138703.4	-1	validated	p.N30	0.000	39	0%	20	45%	0	-	-	-	-	NULL
MAGEE1	57692	genome.wustl.edu	37	X	75650269	75650269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_020932.2	+1	reviewed	p.V649A	0.008	45	0%	21	57.1%	1	0%	possibly_damaging(0.95)	tolerated(0.5)	neutral(0.404)	HMMPfam_MAGE
ARMCX6	54470	genome.wustl.edu	37	X	100871174	100871174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_001009584.1	-1	validated	p.G146D	0.000	123	0%	25	28%	12	0%	possibly_damaging(0.945)	tolerated(0.3)	neutral(0.418)	HMMPfam_DUF634
CXorf57	55086	genome.wustl.edu	37	X	105891582	105891582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_018015.5	+1	validated	p.K648N	0.001	113	0%	82	46.3%	0	-	possibly_damaging(0.881)	tolerated(0.14)	deleterious(0.593)	NULL
SMARCA1	6594	genome.wustl.edu	37	X	128657199	128657199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_003069.3	-1	reviewed	p.T50M	0.354	212	0%	44	45.5%	1	0%	unknown(0)	tolerated(0.11)	-	NULL
AIFM1	9131	genome.wustl.edu	37	X	129289257	129289257	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_145812.2	-1	reviewed	p.V37	1.000	112	0%	53	56.6%	0	-	benign(0)	-	-	NULL
GPR50	9248	genome.wustl.edu	37	X	150349267	150349267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_004224.3	+1	reviewed	p.H404Q	0.000	169	0%	121	43%	0	-	possibly_damaging(0.563)	tolerated(0.12)	neutral(0.453)	NULL
PLXNB3	5365	genome.wustl.edu	37	X	153031021	153031021	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VQ-01A-11D-A10B-09	TCGA-A5-A0VQ-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ec1233d-e6bc-4833-9488-2b51b3d28eb6	7c68694a-fafa-4b51-8dfb-72eebc7d25c9	NM_005393.2	+1	reviewed	p.L11	0.001	46	0%	15	66.7%	0	-	-	-	-	NULL
