Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTS3	9508	genome.wustl.edu	37	4	73179510	73179510	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	4	73179510	73179510	C	T	SNP	ADAMTS3	NM_014243.1	human	genbank	58_37c	-1	reviewed	silent	c.1629	p.K543	1.000	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AKD1	221264	genome.wustl.edu	37	6	109820405	109820405	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	6	109820405	109820405	G	A	SNP	AKD1	ENST00000424296	human	ensembl	58_37c	-1	known	nonsense	c.2125	p.Q709*	0.101	NULL	HMMPfam_ADK,HMMPfam_YHS,superfamily_SSF52540	-	no_errors
APOH	350	genome.wustl.edu	37	17	64210602	64210602	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	17	64210602	64210602	A	T	SNP	APOH	NM_000042.2	human	genbank	58_37c	-1	reviewed	missense	c.951	p.D317E	0.688	HMMPfam_Sushi_2,superfamily_Complement_control_module	HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_Sushi_2,superfamily_Complement_control_module	-	no_errors
ARHGAP21	57584	genome.wustl.edu	37	10	24874774	24874774	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	10	24874774	24874774	C	G	SNP	ARHGAP21	NM_020824.3	human	genbank	58_37c	-1	validated	missense	c.4444	p.D1482H	0.008	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like	-	no_errors
BAT2L2	0	genome.wustl.edu	37	1	171482185	171482185	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	1	171482185	171482185	G	A	SNP	BAT2L2	NM_015172.3	human	genbank	58_37c	+1	validated	missense	c.158	p.R53H	1.000	HMMPfam_BAT2_N	HMMPfam_BAT2_N	-	no_errors
BBX	56987	genome.wustl.edu	37	3	107429348	107429348	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	3	107429348	107429348	G	C	SNP	BBX	NM_001142568.1	human	genbank	58_37c	+1	validated	missense	c.41	p.G14A	1.000	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box,HMMPfam_DUF2028	-	no_errors
C10orf4	118924	genome.wustl.edu	37	10	95459821	95459821	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	10	95459821	95459821	C	G	SNP	FRA10AC1	NM_145246.4	human	genbank	58_37c	-1	reviewed	missense	c.43	p.E15Q	1.000	NULL	HMMPfam_Fra10Ac1	-	no_errors
CCDC66	285331	genome.wustl.edu	37	3	56605211	56605211	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	3	56605211	56605211	G	C	SNP	CCDC66	NM_001141947.1	human	genbank	58_37c	+1	validated	missense	c.817	p.E273Q	1.000	NULL	NULL	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68849604	68849604	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	16	68849604	68849604	C	T	SNP	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	nonsense	c.1507	p.Q503*	0.003	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CNTNAP3	79937	genome.wustl.edu	37	9	39109165	39109165	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	9	39109165	39109165	C	T	SNP	CNTNAP3	NM_033655.3	human	genbank	58_37c	-1	reviewed	missense	c.2357	p.R786H	0.004	superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00282,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors
CNTROB	116840	genome.wustl.edu	37	17	7843471	7843471	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	17	7843471	7843471	G	T	SNP	CNTROB	ENST00000380262	human	ensembl	58_37c	+1	known	missense	c.1222	p.V408L	0.629	NULL	NULL	-	no_errors
COL24A1	255631	genome.wustl.edu	37	1	86578258	86578258	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	1	86578258	86578258	C	A	SNP	COL24A1	NM_152890.5	human	genbank	58_37c	-1	validated	missense	c.1591	p.G531C	1.000	HMMPfam_Collagen	HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
DHX38	9785	genome.wustl.edu	37	16	72141353	72141353	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	16	72141353	72141353	C	A	SNP	DHX38	NM_014003.3	human	genbank	58_37c	+1	reviewed	missense	c.2715	p.D905E	1.000	superfamily_SSF52540	HMMPfam_Helicase_C,HMMSmart_HELICc,PatternScan_DEAH_ATP_HELICASE,HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
ENSG00000210140	0	genome.wustl.edu	37	MT	5806	5806	+	RNA	SNP	T	T	C	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	MT	5806	5806	T	C	SNP	ENSG00000210140	ENST00000387405	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000245346	0	genome.wustl.edu	37	19	37236082	37236083	+	RNA	DEL	TG	TG	-	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	19	37236082	37236083	TG	-	DEL	LOC728485	XR_041663.2	human	genbank	58_37c	+1	model	5_prime_flanking_region	c.-27944	NULL	0.301:0.310	-	-	-	no_errors
EPHB1	2047	genome.wustl.edu	37	3	134884859	134884859	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	3	134884859	134884859	G	A	SNP	EPHB1	NM_004441.4	human	genbank	58_37c	+1	reviewed	silent	c.1635	p.S545	0.042	NULL	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_EGF_2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
EPHB4	2050	genome.wustl.edu	37	7	100410501	100410501	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	7	100410501	100410501	C	T	SNP	EPHB4	NM_004444.4	human	genbank	58_37c	-1	reviewed	silent	c.1986	p.L662	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_EGF_2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
FBXO18	84893	genome.wustl.edu	37	10	5945069	5945069	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	10	5945069	5945069	C	T	SNP	FBXO18	NM_032807.3	human	genbank	58_37c	+1	reviewed	nonsense	c.241	p.Q81*	0.989	NULL	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52540,superfamily_SSF81383	-	no_errors
FRMD4A	55691	genome.wustl.edu	37	10	13702348	13702350	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	10	13702348	13702350	CTT	-	DEL	FRMD4A	NM_018027.3	human	genbank	58_37c	-1	validated	in_frame_del	c.1866_1864	p.K622in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF54236	-	no_errors
GPC3	2719	genome.wustl.edu	37	X	132887945	132887945	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	X	132887945	132887945	C	T	SNP	GPC3	NM_004484.3	human	genbank	58_37c	-1	reviewed	missense	c.596	p.R199Q	1.000	HMMPfam_Glypican	HMMPfam_Glypican,PatternScan_GLYPICAN	-	no_errors
GRIN3A	116443	genome.wustl.edu	37	9	104335778	104335778	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	9	104335778	104335778	C	T	SNP	GRIN3A	NM_133445.2	human	genbank	58_37c	-1	reviewed	missense	c.3026	p.R1009H	0.922	NULL	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
GTF3C4	9329	genome.wustl.edu	37	9	135554618	135554618	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	9	135554618	135554618	G	A	SNP	GTF3C4	NM_012204.2	human	genbank	58_37c	+1	validated	missense	c.1612	p.D538N	1.000	NULL	NULL	-	no_errors
HIST1H2AH	85235	genome.wustl.edu	37	6	27115249	27115249	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	6	27115249	27115249	C	G	SNP	HIST1H2AH	NM_080596.1	human	genbank	58_37c	+1	reviewed	silent	c.342	p.A114	1.000	HMMSmart_SM00414,superfamily_Histone-fold	HMMSmart_SM00414,PatternScan_HISTONE_H2A,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
INHBA	3624	genome.wustl.edu	37	7	41739757	41739757	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	7	41739757	41739757	G	C	SNP	INHBA	NM_002192.2	human	genbank	58_37c	-1	reviewed	silent	c.216	p.P72	1.000	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines	-	no_errors
ITGAE	3682	genome.wustl.edu	37	17	3656666	3656666	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	17	3656666	3656666	G	A	SNP	ITGAE	NM_002208.4	human	genbank	58_37c	-1	reviewed	missense	c.1586	p.T529M	0.987	HMMPfam_FG-GAP,HMMSmart_Int_alpha,superfamily_SSF69318	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF53300,superfamily_SSF69179,superfamily_SSF69318	-	no_errors
KCNB2	9312	genome.wustl.edu	37	8	73848282	73848282	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	8	73848282	73848282	G	A	SNP	KCNB2	NM_004770.2	human	genbank	58_37c	+1	reviewed	missense	c.692	p.R231H	0.368	superfamily_SSF81324	HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Kv2channel,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324	-	no_errors
LAMB3	3914	genome.wustl.edu	37	1	209790887	209790887	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	1	209790887	209790887	C	T	SNP	LAMB3	NM_000228.2	human	genbank	58_37c	-1	reviewed	missense	c.3096	p.M1032I	0.983	NULL	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196	-	no_errors
MIR521-2	0	genome.wustl.edu	37	19	54219912	54219912	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	19	54219912	54219912	C	T	SNP	MIR521-2	ENST00000384818	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.085	-	-	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9086614	9086614	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	19	9086614	9086614	G	T	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.5201	p.S1734Y	0.001	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
NAV3	89795	genome.wustl.edu	37	12	78515855	78515855	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	12	78515855	78515855	G	A	SNP	NAV3	NM_014903.4	human	genbank	58_37c	+1	validated	silent	c.3885	p.T1295	0.999	NULL	HMMPfam_CH,HMMSmart_SM00033,HMMSmart_SM00382,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NTRK2	4915	genome.wustl.edu	37	9	87322806	87322806	+	Missense_Mutation	SNP	G	G	A	rs144037140	byCluster;by1000genomes	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	9	87322806	87322806	G	A	SNP	NTRK2	NM_006180.3	human	genbank	58_37c	+1	reviewed	missense	c.407	p.R136H	1.000	HMMPfam_LRR_1,superfamily_SSF52058	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_LRR_1,PatternScan_RECEPTOR_TYR_KIN_II,HMMSmart_IGc2,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
PARVA	55742	genome.wustl.edu	37	11	12495366	12495366	+	Missense_Mutation	SNP	G	G	A	rs138341373	by1000genomes	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	11	12495366	12495366	G	A	SNP	PARVA	NM_018222.3	human	genbank	58_37c	+1	provisional	missense	c.211	p.E71K	1.000	superfamily_Calponin-homology domain CH-domain	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain	-	no_errors
PCLO	27445	genome.wustl.edu	37	7	82538314	82538314	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	7	82538314	82538314	C	T	SNP	PCLO	NM_033026.5	human	genbank	58_37c	-1	validated	missense	c.13316	p.R4439H	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_zf-piccolo,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PRTG	283659	genome.wustl.edu	37	15	55932020	55932020	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	15	55932020	55932020	C	T	SNP	PRTG	NM_173814.4	human	genbank	58_37c	-1	validated	missense	c.2144	p.R715H	0.988	NULL	HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
PTK7	5754	genome.wustl.edu	37	6	43111207	43111207	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	6	43111207	43111207	G	T	SNP	PTK7	NM_002821.3	human	genbank	58_37c	+1	reviewed	missense	c.2100	p.K700N	1.000	NULL	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
PVALB	5816	genome.wustl.edu	37	22	37209714	37209714	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	22	37209714	37209714	C	T	SNP	PVALB	NM_002854.2	human	genbank	58_37c	-1	reviewed	missense	c.280	p.G94R	1.000	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
QSER1	79832	genome.wustl.edu	37	11	32955992	32955992	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	11	32955992	32955992	C	T	SNP	QSER1	NM_001076786.1	human	genbank	58_37c	+1	provisional	missense	c.2801	p.P934L	0.138	NULL	NULL	-	no_errors
RASGRF1	5923	genome.wustl.edu	37	15	79298692	79298692	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	15	79298692	79298692	G	A	SNP	RASGRF1	NM_002891.4	human	genbank	58_37c	-1	reviewed	silent	c.1950	p.Y650	0.959	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF	HMMPfam_IQ,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_RasGEF_N,HMMSmart_SM00229,PatternScan_DH_1,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF,superfamily_PH domain-like	-	no_errors
SBNO1	55206	genome.wustl.edu	37	12	123812064	123812064	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	12	123812064	123812064	C	T	SNP	SBNO1	NM_018183.3	human	genbank	58_37c	-1	validated	missense	c.1598	p.R533Q	1.000	NULL	NULL	-	no_errors
SMC1A	8243	genome.wustl.edu	37	X	53439190	53439190	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	X	53439190	53439190	C	G	SNP	SMC1A	NM_006306.2	human	genbank	58_37c	-1	reviewed	missense	c.868	p.E290Q	1.000	HMMPfam_SMC_N,superfamily_SSF52540	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540	-	no_errors
SNORD72	0	genome.wustl.edu	37	5	40833091	40833091	+	RNA	SNP	T	T	G	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	5	40833091	40833091	T	G	SNP	RPL37	NM_000997.4	human	genbank	58_37c	-1	reviewed	intronic	c.225-416	e4-416	0.000	-	-	-	no_errors
ST5	6764	genome.wustl.edu	37	11	8732399	8732399	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	11	8732399	8732399	C	T	SNP	ST5	NM_005418.3	human	genbank	58_37c	-1	reviewed	missense	c.2345	p.R782H	1.000	HMMPfam_uDENN,HMMSmart_SM00800	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800	-	no_errors
TRPC1	7220	genome.wustl.edu	37	3	142443528	142443528	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	3	142443528	142443528	G	A	SNP	TRPC1	NM_003304.4	human	genbank	58_37c	+1	validated	missense	c.127	p.E43K	1.000	superfamily_Ankyrin repeat	HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,HMMPfam_TRP_2	-	no_errors
UBXN4	23190	genome.wustl.edu	37	2	136519446	136519446	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	2	136519446	136519446	G	C	SNP	UBXN4	NM_014607.3	human	genbank	58_37c	+1	validated	missense	c.567	p.Q189H	0.982	NULL	HMMPfam_UBX,HMMSmart_UBX,superfamily_Thiordxn-like_fd,superfamily_SSF54236	-	no_errors
USP19	10869	genome.wustl.edu	37	3	49153206	49153206	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	3	49153206	49153206	C	T	SNP	USP19	NM_006677.1	human	genbank	58_37c	-1	provisional	missense	c.1334	p.R445H	0.990	HMMPfam_DUF1872	HMMPfam_UCH,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,superfamily_HSP20-like chaperones,HMMPfam_DUF1872,HMMPfam_CS,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
ZMYND11	10771	genome.wustl.edu	37	10	292731	292731	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	10	292731	292731	C	G	SNP	ZMYND11	NM_006624.4	human	genbank	58_37c	+1	reviewed	missense	c.856	p.Q286E	1.000	HMMPfam_PWWP,HMMSmart_PWWP,superfamily_SSF63748	HMMPfam_PWWP,HMMSmart_PWWP,HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMSmart_RING,HMMSmart_PHD,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,superfamily_SSF63748	-	no_errors
ZNF407	55628	genome.wustl.edu	37	18	72344114	72344114	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A0A9-01A-11W-A019-09	TCGA-A8-A0A9-10A-01W-A021-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	228e66eb-1dc6-4c01-8252-c557a8f53916	80968de5-1de3-4be8-8697-1764f28db89f	18	72344114	72344114	G	C	SNP	ZNF407	NM_017757.2	human	genbank	58_37c	+1	reviewed	missense	c.1139	p.R380T	0.033	NULL	HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
