Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
C10orf119	79892	genome.wustl.edu	37	10	121591584	121591584	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	10	121591584	121591584	C	T	SNP	C10orf119	NM_024834.2	human	genbank	58_37c	-1	validated	missense	c.1742	p.R581Q	1.000	HMMPfam_DUF2044	HMMPfam_DUF2044	-	no_errors
CDH11	1009	genome.wustl.edu	37	16	65032486	65032486	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	16	65032486	65032486	C	T	SNP	CDH11	NM_001797.2	human	genbank	58_37c	-1	reviewed	missense	c.502	p.V168M	1.000	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
COL7A1	1294	genome.wustl.edu	37	3	48609590	48609590	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	3	48609590	48609590	G	A	SNP	COL7A1	NM_000094.3	human	genbank	58_37c	-1	reviewed	silent	c.6993	p.D2331	0.990	HMMPfam_Collagen	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like	-	no_errors
CRABP1	1381	genome.wustl.edu	37	15	78633419	78633419	+	Silent	SNP	G	G	C	rs151297065	byCluster;byFrequency;by1000genomes	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	15	78633419	78633419	G	C	SNP	CRABP1	NM_004378.2	human	genbank	58_37c	+1	reviewed	silent	c.105	p.A35	0.252	HMMPfam_Lipocalin,superfamily_Lipocalins	PatternScan_FABP,HMMPfam_Lipocalin,superfamily_Lipocalins	-	no_errors
ENSG00000234498	0	genome.wustl.edu	37	12	13028844	13028844	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	12	13028844	13028844	C	T	SNP	RPL13AP20	NR_003932.2	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
GSPT2	23708	genome.wustl.edu	37	X	51488353	51488353	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	X	51488353	51488353	A	C	SNP	GSPT2	NM_018094.4	human	genbank	58_37c	+1	reviewed	missense	c.1631	p.H544P	1.000	HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C	HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,HMMPfam_GTP_EFTU_D3,HMMPfam_GTP_EFTU_D2,superfamily_Translat_factor,superfamily_Elong_init_C,HMMPfam_PAM2,superfamily_SSF52540	-	no_errors
HSN2	378465	genome.wustl.edu	37	12	977684	977695	+	In_Frame_Del	DEL	CACCTATCAGTA	CACCTATCAGTA	-	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	CACCTATCAGTA	CACCTATCAGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	12	977684	977695	CACCTATCAGTA	-	DEL	WNK1	NM_018979.3	human	genbank	58_37c	+1	reviewed	intronic	c.2140-2747_2140-2736	e9-2736	1.000:0.996:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors
MGC42105	167359	genome.wustl.edu	37	5	43277278	43277278	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	5	43277278	43277278	G	A	SNP	MGC42105	NM_153361.2	human	genbank	58_37c	+1	provisional	missense	c.412	p.E138K	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
OR2G3	81469	genome.wustl.edu	37	1	247769321	247769321	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	1	247769321	247769321	C	T	SNP	OR2G3	NM_001001914.1	human	genbank	58_37c	+1	provisional	missense	c.434	p.A145V	0.003	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR2T33	391195	genome.wustl.edu	37	1	248436408	248436408	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	1	248436408	248436408	C	A	SNP	OR2T33	NM_001004695.1	human	genbank	58_37c	-1	provisional	missense	c.709	p.A237S	0.992	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OVCH1	341350	genome.wustl.edu	37	12	29604408	29604408	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	12	29604408	29604408	C	T	SNP	OVCH1	NM_183378.2	human	genbank	58_37c	-1	validated	nonsense	c.2625	p.W875*	0.802	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
PCNXL2	80003	genome.wustl.edu	37	1	233136049	233136049	+	Splice_Site	DEL	A	A	-	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	1	233136049	233136049	A	-	DEL	PCNXL2	NM_014801.3	human	genbank	58_37c	-1	provisional	splice_site_del	c.5328+2	e30+2	1.000	-	-	-	no_errors
PRICKLE2	166336	genome.wustl.edu	37	3	64133064	64133064	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	3	64133064	64133064	C	T	SNP	PRICKLE2	NM_198859.3	human	genbank	58_37c	-1	validated	missense	c.1102	p.D368N	1.000	NULL	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_PET,superfamily_SSF57716	-	no_errors
PTAR1	375743	genome.wustl.edu	37	9	72338284	72338284	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	9	72338284	72338284	A	C	SNP	PTAR1	NM_001099666.1	human	genbank	58_37c	-1	validated	missense	c.905	p.L302R	1.000	HMMPfam_PPTA,superfamily_Prenyl_trans	HMMPfam_PPTA,superfamily_Prenyl_trans	-	no_errors
SLC45A4	57210	genome.wustl.edu	37	8	142228731	142228731	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	8	142228731	142228731	G	A	SNP	SLC45A4	NM_001080431.1	human	genbank	58_37c	-1	provisional	silent	c.855	p.H285	0.363	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLC4A4	8671	genome.wustl.edu	37	4	72429510	72429510	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	4	72429510	72429510	T	C	SNP	SLC4A4	NM_001098484.2	human	genbank	58_37c	+1	reviewed	missense	c.3100	p.S1034P	1.000	NULL	HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein	-	no_errors
SYNPO2L	79933	genome.wustl.edu	37	10	75408227	75408227	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	10	75408227	75408227	G	A	SNP	SYNPO2L	NM_001114133.1	human	genbank	58_37c	-1	validated	missense	c.1183	p.R395C	1.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
TPTE2	93492	genome.wustl.edu	37	13	20006620	20006620	+	Silent	SNP	C	C	T	rs147012324	byFrequency	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	13	20006620	20006620	C	T	SNP	TPTE2	NM_199254.2	human	genbank	58_37c	-1	validated	silent	c.1215	p.S405	0.023	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_Voltage-gated potassium channels	-	no_errors
