Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ALMS1	7840	genome.wustl.edu	37	2	73675332	73675332	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	2	73675332	73675332	C	T	SNP	ALMS1	NM_015120.4	human	genbank	58_37c	+1	reviewed	missense	c.1675	p.P559S	0.000	NULL	NULL	-	no_errors
ANO5	203859	genome.wustl.edu	37	11	22294371	22294371	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	11	22294371	22294371	C	A	SNP	ANO5	NM_213599.2	human	genbank	58_37c	+1	reviewed	missense	c.2071	p.P691T	1.000	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
ANP32E	81611	genome.wustl.edu	37	1	150202960	150202960	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	1	150202960	150202960	G	C	SNP	ANP32E	NM_030920.3	human	genbank	58_37c	-1	validated	silent	c.273	p.T91	0.996	HMMPfam_LRR_1,superfamily_L domain-like	HMMPfam_LRR_1,superfamily_L domain-like	-	no_errors
AQP12A	375318	genome.wustl.edu	37	2	241631442	241631442	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	2	241631442	241631442	G	A	SNP	AQP12A	NM_198998.1	human	genbank	58_37c	+1	provisional	missense	c.112	p.A38T	0.021	superfamily_MIP	PatternScan_MIP,superfamily_MIP	-	no_errors
ATP1A2	477	genome.wustl.edu	37	1	160098503	160098503	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	1	160098503	160098503	A	G	SNP	ATP1A2	NM_000702.3	human	genbank	58_37c	+1	reviewed	missense	c.1079	p.E360G	1.000	HMMPfam_E1-E2_ATPase,superfamily_SSF56784,superfamily_SSF81665	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665	-	no_errors
BZW1	9689	genome.wustl.edu	37	2	201683608	201683608	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	2	201683608	201683608	C	G	SNP	BZW1	ENST00000452790	human	ensembl	58_37c	+1	known	missense	c.1046	p.A349G	1.000	superfamily_ARM-type_fold	HMMPfam_W2,HMMSmart_eIF5C,superfamily_ARM-type_fold	-	no_errors
CRY2	1408	genome.wustl.edu	37	11	45880386	45880386	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	11	45880386	45880386	A	T	SNP	CRY2	NM_021117.3	human	genbank	58_37c	+1	validated	silent	c.492	p.V164	1.000	HMMPfam_DNA_photolyase,superfamily_DNA_photolyase_N	HMMPfam_FAD_binding_7,superfamily_Photolyase_FAD-bd/Cryptochr_C,HMMPfam_DNA_photolyase,superfamily_DNA_photolyase_N	-	no_errors
CXorf64	0	genome.wustl.edu	37	X	125955269	125955269	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	X	125955269	125955269	G	T	SNP	CXorf64	NM_001122716.1	human	genbank	58_37c	+1	validated	missense	c.648	p.R216S	0.000	NULL	NULL	-	no_errors
CYP7B1	9420	genome.wustl.edu	37	8	65528565	65528565	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	8	65528565	65528565	G	T	SNP	CYP7B1	NM_004820.3	human	genbank	58_37c	-1	reviewed	missense	c.533	p.A178E	0.000	superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450	-	no_errors
DCHS2	54798	genome.wustl.edu	37	4	155160373	155160373	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	4	155160373	155160373	A	C	SNP	DCHS2	NM_017639.3	human	genbank	58_37c	-1	validated	missense	c.6076	p.S2026A	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
ERMP1	79956	genome.wustl.edu	37	9	5805716	5805716	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	9	5805716	5805716	C	A	SNP	ERMP1	NM_024896.2	human	genbank	58_37c	-1	validated	missense	c.1618	p.V540F	0.012	NULL	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases	-	no_errors
FOXP4	116113	genome.wustl.edu	37	6	41557744	41557745	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	6	41557744	41557745	TC	-	DEL	FOXP4	NM_001012426.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1193_1194	p.S399fs	1.000:1.000	NULL	"HMMPfam_Fork_head,HMMSmart_SM00339,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_FORK_HEAD_2,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
GPCPD1	0	genome.wustl.edu	37	20	5556511	5556511	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	20	5556511	5556511	A	C	SNP	GPCPD1	NM_019593.3	human	genbank	58_37c	-1	validated	silent	c.819	p.T273	0.931	NULL	HMMPfam_CBM_20,HMMPfam_GDPD,superfamily_CBD_4,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors
GZMH	2999	genome.wustl.edu	37	14	25075891	25075891	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	14	25075891	25075891	T	A	SNP	GZMH	NM_033423.3	human	genbank	58_37c	-1	provisional	missense	c.659	p.N220I	0.000	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
ISOC1	51015	genome.wustl.edu	37	5	128448599	128448599	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	5	128448599	128448599	C	T	SNP	ISOC1	NM_016048.2	human	genbank	58_37c	+1	validated	nonsense	c.802	p.Q268*	1.000	HMMPfam_Isochorismatase,superfamily_Iscrsm_hydrolase	HMMPfam_Isochorismatase,superfamily_Iscrsm_hydrolase	-	no_errors
KCND1	3750	genome.wustl.edu	37	X	48825777	48825777	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	X	48825777	48825777	C	G	SNP	KCND1	NM_004979.4	human	genbank	58_37c	-1	reviewed	missense	c.902	p.R301P	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels	-	no_errors
LARP7	51574	genome.wustl.edu	37	4	113567531	113567531	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	4	113567531	113567531	C	A	SNP	LARP7	NM_015454.1	human	genbank	58_37c	+1	validated	missense	c.227	p.S76Y	0.983	"HMMPfam_La,HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_La,HMMSmart_SM00715,HMMPfam_RRM_3,superfamily_""Winged helix"" DNA-binding domain,superfamily_RNA-binding domain RBD"	-	no_errors
LOC100287207	0	genome.wustl.edu	37	6	30955398	30955398	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	6	30955398	30955398	C	A	SNP	LOC100287207	XM_002342619.1	human	genbank	58_37c	-1	model	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors
LRRC16B	90668	genome.wustl.edu	37	14	24534915	24534915	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	14	24534915	24534915	G	A	SNP	LRRC16B	NM_138360.3	human	genbank	58_37c	+1	validated	missense	c.3481	p.G1161R	0.977	NULL	HMMSmart_SM00368,superfamily_RNI-like	-	no_errors
LRRC4C	57689	genome.wustl.edu	37	11	40136678	40136678	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	11	40136678	40136678	G	C	SNP	LRRC4C	NM_020929.1	human	genbank	58_37c	-1	validated	missense	c.1165	p.P389A	1.000	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
NIN	51199	genome.wustl.edu	37	14	51228556	51228556	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	14	51228556	51228556	T	C	SNP	NIN	NM_020921.3	human	genbank	58_37c	-1	reviewed	silent	c.1848	p.E616	0.984	NULL	HMMPfam_efhand,superfamily_EF-hand	-	no_errors
NIN	51199	genome.wustl.edu	37	14	51238049	51238049	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	14	51238049	51238049	C	A	SNP	NIN	NM_020921.3	human	genbank	58_37c	-1	reviewed	splice_site	c.1118+1	e8+1	1.000	-	-	-	no_errors
OBSL1	23363	genome.wustl.edu	37	2	220432023	220432023	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	2	220432023	220432023	G	A	SNP	OBSL1	NM_015311.2	human	genbank	58_37c	-1	reviewed	silent	c.1809	p.H603	0.833	superfamily_FN_III-like	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
OR1I1	126370	genome.wustl.edu	37	19	15198108	15198108	+	Missense_Mutation	SNP	G	G	A	rs146090785	byFrequency	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	19	15198108	15198108	G	A	SNP	OR1I1	NM_001004713.1	human	genbank	58_37c	+1	provisional	missense	c.232	p.V78I	0.901	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR4A15	81328	genome.wustl.edu	37	11	55135556	55135556	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	11	55135556	55135556	C	T	SNP	OR4A15	NM_001005275.1	human	genbank	58_37c	+1	provisional	missense	c.197	p.T66M	0.035	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OXR1	55074	genome.wustl.edu	37	8	107718659	107718659	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	8	107718659	107718659	A	C	SNP	OXR1	NM_018002.2	human	genbank	58_37c	+1	validated	missense	c.910	p.T304P	0.104	NULL	HMMSmart_SM00257,HMMPfam_GRAM,HMMPfam_TLD,HMMSmart_SM00584,HMMPfam_LysM,superfamily_LysM domain	-	no_errors
PDE4C	5143	genome.wustl.edu	37	19	18332958	18332958	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	19	18332958	18332958	A	T	SNP	PDE4C	NM_000923.3	human	genbank	58_37c	-1	validated	missense	c.418	p.S140T	1.000	NULL	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like	-	no_errors
SOBP	55084	genome.wustl.edu	37	6	107908293	107908293	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	6	107908293	107908293	G	T	SNP	SOBP	NM_018013.3	human	genbank	58_37c	+1	validated	nonsense	c.583	p.E195*	1.000	NULL	NULL	-	no_errors
SON	6651	genome.wustl.edu	37	21	34922545	34922545	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	21	34922545	34922545	G	T	SNP	SON	NM_138927.1	human	genbank	58_37c	+1	reviewed	silent	c.1008	p.A336	0.715	NULL	HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_dsrm,superfamily_dsRNA-binding domain-like	-	no_errors
SRBD1	55133	genome.wustl.edu	37	2	45812872	45812872	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	2	45812872	45812872	G	A	SNP	SRBD1	NM_018079.4	human	genbank	58_37c	-1	validated	silent	c.690	p.A230	1.000	HMMPfam_Tex_N	HMMPfam_S1,HMMSmart_SM00732,superfamily_Nucleic acid-binding proteins,HMMPfam_Tex_N,HMMSmart_SM00316	-	no_errors
SUPT7L	9913	genome.wustl.edu	37	2	27876562	27876562	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	2	27876562	27876562	C	T	SNP	SUPT7L	NM_014860.1	human	genbank	58_37c	-1	provisional	silent	c.1035	p.E345	1.000	NULL	HMMPfam_Bromo_TP,HMMSmart_SM00576	-	no_errors
SYNGR4	23546	genome.wustl.edu	37	19	48879441	48879441	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	19	48879441	48879441	C	T	SNP	SYNGR4	NM_012451.2	human	genbank	58_37c	+1	reviewed	missense	c.571	p.P191S	0.998	NULL	HMMPfam_MARVEL	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7579355	7579355	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	17	7579355	7579355	A	G	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.332	p.L111P	0.684	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRPC4AP	26133	genome.wustl.edu	37	20	33623023	33623023	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	20	33623023	33623023	G	A	SNP	TRPC4AP	NM_015638.2	human	genbank	58_37c	-1	validated	silent	c.954	p.F318	1.000	NULL	NULL	-	no_errors
TSR1	55720	genome.wustl.edu	37	17	2236988	2236988	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	17	2236988	2236988	T	C	SNP	TSR1	NM_018128.4	human	genbank	58_37c	-1	validated	missense	c.1004	p.D335G	0.001	NULL	HMMPfam_DUF663,HMMPfam_AARP2CN,HMMSmart_AARP2CN	-	no_errors
UBA5	79876	genome.wustl.edu	37	3	132379431	132379431	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	3	132379431	132379431	G	A	SNP	UBA5	NM_024818.3	human	genbank	58_37c	+1	reviewed	missense	c.50	p.R17Q	0.994	NULL	HMMPfam_ThiF,superfamily_MoeB	-	no_errors
XIRP2	129446	genome.wustl.edu	37	2	168101657	168101657	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	2	168101657	168101657	A	G	SNP	XIRP2	NM_152381.4	human	genbank	58_37c	+1	validated	missense	c.3755	p.K1252R	0.997	NULL	HMMPfam_Xin	-	no_errors
ZNF518B	85460	genome.wustl.edu	37	4	10447420	10447420	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	4	10447420	10447420	T	A	SNP	ZNF518B	NM_053042.2	human	genbank	58_37c	-1	validated	missense	c.533	p.Q178L	1.000	HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF878	0	genome.wustl.edu	37	19	12154855	12154855	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AQ-A04J-01A-02W-A050-09	TCGA-AQ-A04J-10A-01W-A055-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	cce21f2b-784b-4fa0-9809-ae532c528f8e	a53132c6-21f2-4083-9b0b-5e927d63e199	19	12154855	12154855	T	A	SNP	ZNF878	NM_001080404.1	human	genbank	58_37c	-1	inferred	missense	c.1502	p.K501M	0.008	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
