Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACTBL3	0	genome.wustl.edu	37	2	132357679	132357679	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	2	132357679	132357679	T	C	SNP	ACTBL3	XM_001723912.2	human	genbank	58_37c	+1	model	silent	c.801	p.Y267	0.000	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,PatternScan_ZINC_FINGER_C2H2_1	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ADAM8	0	genome.wustl.edu	37	10	135076604	135076604	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	10	135076604	135076604	C	T	SNP	ADAM8	NM_001109.4	human	genbank	58_37c	-1	reviewed	missense	c.2531	p.R844H	0.000	NULL	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	pseudogene:no_stop_codon
CLSPN	0	genome.wustl.edu	37	1	36204752	36204752	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	1	36204752	36204752	G	A	SNP	CLSPN	NM_022111.2	human	genbank	58_37c	-1	reviewed	nonsense	c.3415	p.R1139*	1.000	NULL	NULL	-	no_errors
COL9A2	0	genome.wustl.edu	37	1	40778134	40778134	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	1	40778134	40778134	T	A	SNP	COL9A2	ENST00000417105	human	ensembl	58_37c	-1	known	missense	c.322	p.T108S	1.000	HMMPfam_Collagen	HMMPfam_Collagen	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CPLX2	0	genome.wustl.edu	37	5	175307021	175307021	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	5	175307021	175307021	G	A	SNP	CPLX2	ENST00000393746	human	ensembl	58_37c	+1	known	missense	c.322	p.A108T	0.998	HMMPfam_Synaphin	HMMPfam_Synaphin	-	no_errors
CSPG4	0	genome.wustl.edu	37	15	75982666	75982666	+	Missense_Mutation	SNP	C	C	A	rs150241616	byFrequency	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	15	75982666	75982666	C	A	SNP	CSPG4	NM_001897.4	human	genbank	58_37c	-1	reviewed	missense	c.740	p.R247L	0.003	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors
DCLRE1A	0	genome.wustl.edu	37	10	115607027	115607027	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	10	115607027	115607027	T	C	SNP	DCLRE1A	NM_014881.3	human	genbank	58_37c	-1	provisional	silent	c.2193	p.T731	0.996	superfamily_Metallo-hydrolase/oxidoreductase	HMMPfam_DRMBL,superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
DIRC2	0	genome.wustl.edu	37	3	122578962	122578964	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	122578962	122578964	CTC	-	DEL	DIRC2	NM_032839.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1051_1053	p.L353in_frame_del	1.000:1.000:1.000	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-	no_errors
DYNC2H1	0	genome.wustl.edu	37	11	102991220	102991220	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	11	102991220	102991220	A	C	SNP	DYNC2H1	NM_001080463.1	human	genbank	58_37c	+1	reviewed	silent	c.1044	p.L348	1.000	HMMPfam_DHC_N1	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENPP2	0	genome.wustl.edu	37	8	120598499	120598499	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	8	120598499	120598499	G	A	SNP	ENPP2	NM_006209.3	human	genbank	58_37c	-1	reviewed	missense	c.1450	p.R484C	1.000	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like	HMMPfam_Somatomedin_B,HMMSmart_SM00201,PatternScan_SMB_1,HMMPfam_Endonuclease_NS,HMMSmart_SM00477,HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like,superfamily_His-Me finger endonucleases,superfamily_Somatomedin B domain	-	no_errors
ENSG00000184206	0	genome.wustl.edu	37	15	84909860	84909860	+	Silent	SNP	G	G	A	rs77119089	byFrequency	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	15	84909860	84909860	G	A	SNP	ENSG00000184206	ENST00000510439	human	ensembl	58_37c	+1	known	silent	c.1488	p.S496	0.763	NULL	NULL	-	no_errors
FAM157C	0	genome.wustl.edu	37	16	90167953	90167953	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	16	90167953	90167953	G	T	SNP	FAM157C	XM_001714162.2	human	genbank	58_37c	+1	model	splice_site	c.155+1	e1+1	0.101	-	-	-	no_errors
FAT1	0	genome.wustl.edu	37	4	187542456	187542456	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	4	187542456	187542456	C	T	SNP	FAT1	NM_005245.3	human	genbank	58_37c	-1	reviewed	missense	c.5284	p.A1762T	0.000	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29623224	29623224	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	20	29623224	29623224	C	A	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	silent	c.36	p.V12	1.000	HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
GPR113	0	genome.wustl.edu	37	2	26533779	26533779	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	2	26533779	26533779	C	T	SNP	GPR113	NM_001145168.1	human	genbank	58_37c	-1	validated	silent	c.2817	p.V939	0.457	HMMPfam_7tm_2	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_EGF_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
GRIK1	0	genome.wustl.edu	37	21	30909667	30909667	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	21	30909667	30909667	A	G	SNP	GRIK1	NM_175611.2	human	genbank	58_37c	-1	reviewed	missense	c.2602	p.S868P	1.000	NULL	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
KIF9	0	genome.wustl.edu	37	3	47308543	47308543	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	47308543	47308543	A	C	SNP	KIF9	NM_001134878.1	human	genbank	58_37c	-1	validated	missense	c.691	p.L231V	0.992	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KLHL22	0	genome.wustl.edu	37	22	20796481	20796481	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	22	20796481	20796481	C	A	SNP	KLHL22	NM_032775.2	human	genbank	58_37c	-1	validated	missense	c.1784	p.R595L	0.631	NULL	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LOC100130331	0	genome.wustl.edu	37	1	238090087	238090087	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	1	238090087	238090087	G	A	SNP	LOC100130331	NR_027247.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.005	-	-	-	pseudogene
LOC100133591	0	genome.wustl.edu	37	17	69316	69317	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	17	69316	69317	CC	-	DEL	LOC100133591	XM_001732883.2	human	genbank	58_37c	+1	model	frame_shift_del	c.1050_1051	p.L351fs	0.001:0.001	NULL	PatternScan_N6_MTASE	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
LOC595101	0	genome.wustl.edu	37	16	30292715	30292715	+	RNA	SNP	A	A	G	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	16	30292715	30292715	A	G	SNP	LOC595101	NR_002453.4	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC644548	0	genome.wustl.edu	37	4	63683675	63683675	+	RNA	SNP	T	T	A	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	4	63683675	63683675	T	A	SNP	LOC644548	XR_078302.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC644768	0	genome.wustl.edu	37	22	16940677	16940677	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	22	16940677	16940677	G	A	SNP	LOC644768	XR_016834.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LPA	0	genome.wustl.edu	37	6	160962167	160962167	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	6	160962167	160962167	C	G	SNP	LPA	NM_005577.2	human	genbank	58_37c	-1	reviewed	missense	c.5566	p.V1856L	1.000	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,superfamily_Kringle-like,PatternScan_KRINGLE_1,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
LPCAT4	0	genome.wustl.edu	37	15	34654803	34654803	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	15	34654803	34654803	A	T	SNP	LPCAT4	NM_153613.2	human	genbank	58_37c	-1	validated	nonsense	c.855	p.Y285*	1.000	superfamily_Glycerol-3-phosphate (1)-acyltransferase	HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase	-	no_errors
MC2R	0	genome.wustl.edu	37	18	13884764	13884764	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	18	13884764	13884764	C	T	SNP	MC2R	NM_000529.2	human	genbank	58_37c	-1	reviewed	missense	c.754	p.A252T	0.121	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
MDGA1	0	genome.wustl.edu	37	6	37619916	37619916	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	6	37619916	37619916	C	G	SNP	MDGA1	NM_153487.3	human	genbank	58_37c	-1	validated	missense	c.1183	p.A395P	0.996	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	PatternScan_NITROGENASE_1_1,HMMPfam_MAM,HMMSmart_SM00137,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
MGAT5	0	genome.wustl.edu	37	2	135028123	135028123	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	2	135028123	135028123	T	G	SNP	MGAT5	NM_002410.3	human	genbank	58_37c	+1	validated	splice_site	c.406+2	e2+2	1.000	-	-	-	no_errors
MNT	0	genome.wustl.edu	37	17	2291304	2291304	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	17	2291304	2291304	C	G	SNP	MNT	NM_020310.2	human	genbank	58_37c	-1	reviewed	missense	c.847	p.E283Q	1.000	superfamily_HLH helix-loop-helix DNA-binding domain	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors
MYH15	0	genome.wustl.edu	37	3	108129757	108129757	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	108129757	108129757	G	A	SNP	MYH15	NM_014981.1	human	genbank	58_37c	-1	validated	nonsense	c.4228	p.Q1410*	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NBPF1	0	genome.wustl.edu	37	1	16902844	16902844	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	1	16902844	16902844	G	T	SNP	NBPF1	NM_017940.3	human	genbank	58_37c	-1	predicted	missense	c.2037	p.D679E	0.001	NULL	HMMPfam_DUF1220	-	no_errors
PCDHGA2	0	genome.wustl.edu	37	5	140718824	140718824	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	5	140718824	140718824	T	A	SNP	PCDHGA2	NM_018915.2	human	genbank	58_37c	+1	reviewed	missense	c.286	p.C96S	1.000	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PHLPP2	0	genome.wustl.edu	37	16	71683564	71683565	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	16	71683564	71683565	-	G	INS	PHLPP2	NM_015020.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.3201_3200	p.A1068fs	0.983:1.000	NULL	HMMPfam_LRR_1,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00369,HMMPfam_PP2C,HMMSmart_SM00364,superfamily_PH domain-like,superfamily_L domain-like	-	no_errors
PHOX2B	0	genome.wustl.edu	37	4	41749389	41749389	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	4	41749389	41749389	C	T	SNP	PHOX2B	NM_003924.3	human	genbank	58_37c	-1	reviewed	missense	c.406	p.D136N	1.000	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
POLR2A	0	genome.wustl.edu	37	17	7400102	7400102	+	Missense_Mutation	SNP	G	G	A	rs139873836	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	17	7400102	7400102	G	A	SNP	POLR2A	NM_000937.3	human	genbank	58_37c	+1	validated	missense	c.557	p.R186Q	1.000	HMMPfam_RNA_pol_Rpb1_1,superfamily_SSF64484	HMMPfam_RNA_pol_Rpb1_R,PatternScan_RNA_POL_II_REPEAT,HMMPfam_RNA_pol_Rpb1_2,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_7,HMMPfam_RNA_pol_Rpb1_6,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_4,superfamily_SSF64484	-	no_errors
PRPF6	0	genome.wustl.edu	37	20	62657296	62657296	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	20	62657296	62657296	A	G	SNP	PRPF6	NM_012469.3	human	genbank	58_37c	+1	reviewed	missense	c.1913	p.N638S	1.000	HMMSmart_HAT,superfamily_SSF48452	HMMPfam_TPR_1,HMMSmart_HAT,HMMPfam_PRP1_N,superfamily_SSF48452	-	no_errors
ROBO1	0	genome.wustl.edu	37	3	78987810	78987810	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	78987810	78987810	C	T	SNP	ROBO1	NM_002941.3	human	genbank	58_37c	-1	reviewed	missense	c.440	p.C147Y	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
SLITRK2	0	genome.wustl.edu	37	X	144904015	144904015	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	X	144904015	144904015	T	A	SNP	SLITRK2	NM_001144003.2	human	genbank	58_37c	+1	reviewed	silent	c.72	p.T24	1.000	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	-	no_errors
SPEN	0	genome.wustl.edu	37	1	16261272	16261273	+	Frame_Shift_Ins	INS	-	-	CT	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	1	16261272	16261273	-	CT	INS	SPEN	NM_015001.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.8537_8538	p.E2846fs	1.000:0.920	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SPOC,superfamily_SPOC-like,superfamily_SSF54928	-	no_errors
SPRY3	0	genome.wustl.edu	37	X	155004063	155004063	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	X	155004063	155004063	C	T	SNP	SPRY3	NM_005840.1	human	genbank	58_37c	+1	validated	missense	c.530	p.S177F	1.000	HMMPfam_Sprouty	HMMPfam_Sprouty	-	no_errors
TACR3	0	genome.wustl.edu	37	4	104640534	104640534	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	4	104640534	104640534	A	C	SNP	TACR3	NM_001059.1	human	genbank	58_37c	-1	reviewed	missense	c.299	p.V100G	0.993	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
TDGF3	0	genome.wustl.edu	37	X	109764869	109764869	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	X	109764869	109764869	G	A	SNP	TDGF3	NR_002718.2	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.001	-	-	-	pseudogene
TRAPPC1	0	genome.wustl.edu	37	17	7833976	7833976	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	17	7833976	7833976	C	T	SNP	TRAPPC1	NM_021210.4	human	genbank	58_37c	-1	reviewed	missense	c.386	p.R129Q	0.994	HMMPfam_Sybindin,superfamily_SNARE-like	HMMPfam_Sybindin,superfamily_SNARE-like	-	no_errors
YY2	0	genome.wustl.edu	37	X	21874875	21874875	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	X	21874875	21874875	C	T	SNP	YY2	NM_206923.3	human	genbank	58_37c	+1	reviewed	silent	c.273	p.C91	0.010	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
