Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ARHGEF6	0	genome.wustl.edu	37	X	135827435	135827435	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	X	135827435	135827435	G	C	SNP	ARHGEF6	NM_004840.2	human	genbank	58_37c	-1	reviewed	missense	c.406	p.Q136E	0.259	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,superfamily_Calponin-homology domain CH-domain,superfamily_PH domain-like	-	no_errors
AUP1	0	genome.wustl.edu	37	2	74756111	74756112	+	Splice_Site	INS	-	-	A	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	2	74756111	74756112	-	A	INS	AUP1	ENST00000258081	human	ensembl	58_37c	-1	known	splice_site_ins	c.483+1_483+1	e4+1	0.036:0.001	-	-	-	no_errors
CBFB	0	genome.wustl.edu	37	16	67070640	67070643	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	AGAA	AGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	16	67070640	67070643	AGAA	-	DEL	CBFB	NM_022845.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.264_267	p.R90fs	1.000:1.000:1.000:1.000	HMMPfam_CBF_beta,superfamily_CBF_beta	HMMPfam_CBF_beta,superfamily_CBF_beta	-	no_errors
CCDC135	0	genome.wustl.edu	37	16	57762336	57762336	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	16	57762336	57762336	T	G	SNP	CCDC135	NM_032269.5	human	genbank	58_37c	+1	validated	missense	c.2231	p.V744G	0.992	NULL	NULL	-	no_errors
CD33	0	genome.wustl.edu	37	19	51729330	51729330	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	19	51729330	51729330	C	T	SNP	CD33	NM_001772.3	human	genbank	58_37c	+1	validated	silent	c.690	p.N230	0.000	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
CDKN1B	0	genome.wustl.edu	37	12	12871006	12871007	+	Frame_Shift_Ins	INS	-	-	GG	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	12	12871006	12871007	-	GG	INS	CDKN1B	NM_004064.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.233_234	p.V79fs	0.961:0.979	HMMPfam_CDI	HMMPfam_CDI	-	no_errors
CHD4	0	genome.wustl.edu	37	12	6702279	6702279	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	12	6702279	6702279	C	T	SNP	CHD4	NM_001273.2	human	genbank	58_37c	-1	reviewed	missense	c.2630	p.R877Q	1.000	HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00249,PatternScan_DEAH_ATP_HELICASE,HMMPfam_DUF1086,HMMPfam_DUF1087,superfamily_FYVE/PHD zinc finger,HMMPfam_CHDCT2,HMMPfam_CHDNT,HMMSmart_SM00487,superfamily_Chromo domain-like,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
COG6	0	genome.wustl.edu	37	13	40229842	40229843	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	13	40229842	40229843	-	G	INS	COG6	ENST00000255468	human	ensembl	58_37c	+1	known	frame_shift_ins	c.78_79	p.G28fs	0.000:0.000	NULL	HMMPfam_COG6	-	no_errors
COL7A1	0	genome.wustl.edu	37	3	48630811	48630811	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	3	48630811	48630811	C	T	SNP	COL7A1	NM_000094.3	human	genbank	58_37c	-1	reviewed	silent	c.498	p.Q166	0.992	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like	-	no_errors
DUOX2	0	genome.wustl.edu	37	15	45388167	45388167	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	15	45388167	45388167	G	A	SNP	DUOX2	NM_014080.4	human	genbank	58_37c	-1	reviewed	silent	c.3939	p.T1313	0.076	HMMPfam_FAD_binding_8,superfamily_Riboflavin synthase domain-like	HMMPfam_An_peroxidase,HMMSmart_SM00054,superfamily_Heme-dependent peroxidases,HMMPfam_FAD_binding_8,HMMPfam_NAD_binding_6,HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
ENSG00000198763	0	genome.wustl.edu	37	MT	4515	4515	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	MT	4515	4515	G	A	SNP	ENSG00000198763	ENST00000361453	human	ensembl	58_37c	+1	known	missense	c.46	p.G16S	NULL	NULL	HMMPfam_Oxidored_q1,HMMPfam_NADH_dehy_S2_C	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000230059	0	genome.wustl.edu	37	7	2489370	2489370	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	7	2489370	2489370	G	A	SNP	ENSG00000230059	ENST00000432223	human	ensembl	58_37c	+1	known	missense	c.61	p.G21R	0.000	PatternScan_TNFR_NGFR_1	PatternScan_TNFR_NGFR_1	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region
ENSG00000245734	0	genome.wustl.edu	37	16	88717437	88717437	+	RNA	SNP	G	G	T	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	16	88717437	88717437	G	T	SNP	ENSG00000245734	ENST00000498879	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors
EXTL3	0	genome.wustl.edu	37	8	28595120	28595120	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	8	28595120	28595120	C	G	SNP	EXTL3	NM_001440.2	human	genbank	58_37c	+1	provisional	nonsense	c.2361	p.Y787*	1.000	HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Exostosin,HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
FGFR1	0	genome.wustl.edu	37	8	38314914	38314914	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	8	38314914	38314914	T	C	SNP	FGFR1	NM_023110.2	human	genbank	58_37c	-1	reviewed	silent	c.51	p.T17	0.968	NULL	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29632662	29632662	+	Missense_Mutation	SNP	G	G	T	rs1803594	by2Hit2Allele	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	20	29632662	29632662	G	T	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	missense	c.477	p.E159D	0.647	HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
FRG2B	0	genome.wustl.edu	37	10	135438753	135438753	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	10	135438753	135438753	G	A	SNP	FRG2B	NM_001080998.1	human	genbank	58_37c	-1	provisional	silent	c.687	p.T229	0.707	NULL	NULL	-	no_errors
GATA2	0	genome.wustl.edu	37	3	128200691	128200691	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	3	128200691	128200691	C	T	SNP	GATA2	NM_001145661.1	human	genbank	58_37c	-1	reviewed	missense	c.1114	p.A372T	1.000	HMMPfam_GATA,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,superfamily_SSF57716	HMMPfam_GATA,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,superfamily_SSF57716	-	no_errors
HEATR4	0	genome.wustl.edu	37	14	73976100	73976100	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	14	73976100	73976100	G	A	SNP	HEATR4	NM_203309.1	human	genbank	58_37c	-1	provisional	missense	c.1495	p.R499W	0.975	HMMPfam_HEAT,superfamily_ARM-type_fold	HMMPfam_HEAT,superfamily_ARM-type_fold	-	no_errors
HNF1A	0	genome.wustl.edu	37	12	121434630	121434631	+	Frame_Shift_Ins	INS	-	-	TCATTCAT	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	12	121434630	121434631	-	TCATTCAT	INS	HNF1A	ENST00000344370	human	ensembl	58_37c	+1	known	frame_shift_ins	c.1394_1395	p.F469fs	0.006:0.017	HMMPfam_HNF-1B_C	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_HNF-1B_C,HMMPfam_HNF-1A_C,HMMPfam_HNF-1_N,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1,superfamily_Dimerization cofactor of HNF-1 alpha	-	no_errors
INSRR	0	genome.wustl.edu	37	1	156823744	156823744	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	1	156823744	156823744	T	A	SNP	INSRR	NM_014215.1	human	genbank	58_37c	-1	validated	missense	c.437	p.E146V	1.000	HMMPfam_Recep_L_domain,superfamily_SSF52058	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_Furin-like,HMMSmart_FU,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Grow_fac_recept,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52058	-	no_errors
KIAA2013	0	genome.wustl.edu	37	1	11982841	11982841	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	1	11982841	11982841	T	C	SNP	KIAA2013	NM_138346.1	human	genbank	58_37c	-1	provisional	missense	c.1739	p.D580G	1.000	HMMPfam_DUF2152	HMMPfam_DUF2152	-	no_errors
LOC100132672	0	genome.wustl.edu	37	9	69502172	69502172	+	RNA	SNP	A	A	G	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	9	69502172	69502172	A	G	SNP	LOC100132672	XR_038504.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.976	-	-	-	pseudogene
LOC100288676	0	genome.wustl.edu	37	9	69380335	69380335	+	Silent	SNP	G	G	A	rs148220156	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	9	69380335	69380335	G	A	SNP	LOC100288676	XM_002342923.1	human	genbank	58_37c	-1	model	silent	c.96	p.A32	0.014	NULL	NULL	-	no_errors
LOC100289574	0	genome.wustl.edu	37	16	32190787	32190787	+	Missense_Mutation	SNP	T	T	C	rs62042697	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	16	32190787	32190787	T	C	SNP	LOC100289574	XM_002343438.1	human	genbank	58_37c	-1	model	missense	c.395	p.Q132R	0.879	NULL	NULL	-	no_errors
LOC388692	0	genome.wustl.edu	37	1	149289285	149289285	+	RNA	SNP	A	A	G	rs143991026	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	1	149289285	149289285	A	G	SNP	LOC388692	NR_027002.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.002	-	-	-	no_errors
LOC440577	0	genome.wustl.edu	37	1	27533907	27533912	+	In_Frame_Del	DEL	GATGAT	GATGAT	-	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	GATGAT	GATGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	1	27533907	27533912	GATGAT	-	DEL	LOC440577	XM_496355.5	human	genbank	58_37c	+1	model	in_frame_del	c.475_480	p.DD162in_frame_del	0.985:0.981:0.977:0.973:0.968:0.964	HMMPfam_Nucleoplasmin	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors
LOC644717	0	genome.wustl.edu	37	X	134814959	134814959	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	X	134814959	134814959	C	T	SNP	LOC644717	XM_002343850.1	human	genbank	58_37c	-1	model	missense	c.241	p.A81T	0.000	NULL	NULL	-	no_errors
LRP1B	0	genome.wustl.edu	37	2	141081609	141081609	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	2	141081609	141081609	T	C	SNP	LRP1B	NM_018557.2	human	genbank	58_37c	-1	validated	missense	c.12367	p.I4123V	1.000	HMMPfam_Ldl_recept_b,superfamily_SSF63825	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMPfam_NHL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
MECOM	0	genome.wustl.edu	37	3	168802736	168802736	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	3	168802736	168802736	C	T	SNP	MECOM	ENST00000494292	human	ensembl	58_37c	-1	known	silent	c.3654	p.A1218	0.011	NULL	HMMSmart_SM00317,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100637074	100637074	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	7	100637074	100637074	G	A	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.3659	p.R1220H	0.000	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195506387	195506387	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	3	195506387	195506387	G	T	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.11680	p.P3894T	0.001	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NCF1	0	genome.wustl.edu	37	7	74193672	74193672	+	Missense_Mutation	SNP	C	C	T	rs146125534	byFrequency	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	7	74193672	74193672	C	T	SNP	NCF1	NM_000265.4	human	genbank	58_37c	+1	reviewed	missense	c.299	p.T100M	0.507	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_p47_phox_C	-	no_errors
NFIA	0	genome.wustl.edu	37	1	61848997	61848997	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	1	61848997	61848997	G	A	SNP	NFIA	NM_001145512.1	human	genbank	58_37c	+1	reviewed	silent	c.1170	p.A390	0.740	HMMPfam_CTF_NFI	HMMPfam_CTF_NFI,HMMPfam_MH1,HMMSmart_SM00523,HMMPfam_NfI_DNAbd_pre-N,PatternScan_CTF_NFI_1	-	no_errors
PAPOLB	0	genome.wustl.edu	37	7	4900824	4900824	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	7	4900824	4900824	C	T	SNP	PAPOLB	NM_020144.4	human	genbank	58_37c	-1	validated	silent	c.618	p.R206	1.000	HMMPfam_PAP_central,superfamily_SSF81301	HMMPfam_NTP_transf_2,HMMPfam_PAP_RNA-bind,HMMPfam_PAP_central,superfamily_PAP_C,superfamily_SSF81301,superfamily_SSF81631	-	no_errors
PCDHA3	0	genome.wustl.edu	37	5	140180885	140180885	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	5	140180885	140180885	G	A	SNP	PCDHA3	NM_018906.2	human	genbank	58_37c	+1	reviewed	missense	c.103	p.V35I	0.046	HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PCDHGA3	0	genome.wustl.edu	37	5	140725928	140725928	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	5	140725928	140725928	G	A	SNP	PCDHGA3	NM_018916.3	human	genbank	58_37c	+1	reviewed	silent	c.2328	p.A776	0.000	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
POLR2B	0	genome.wustl.edu	37	4	57876368	57876368	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	4	57876368	57876368	T	G	SNP	POLR2B	ENST00000510355	human	ensembl	58_37c	+1	known	splice_site	c.NULL	NULL	0.001	-	-	-	no_coding_region
RB1CC1	0	genome.wustl.edu	37	8	53596281	53596281	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	8	53596281	53596281	T	G	SNP	RB1CC1	NM_014781.4	human	genbank	58_37c	-1	reviewed	splice_site	c.199-2	e3-2	1.000	-	-	-	no_errors
RYR3	0	genome.wustl.edu	37	15	34015010	34015010	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	15	34015010	34015010	C	T	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	silent	c.6714	p.N2238	0.057	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SIX6	0	genome.wustl.edu	37	14	60976319	60976319	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	14	60976319	60976319	G	A	SNP	SIX6	NM_007374.2	human	genbank	58_37c	+1	reviewed	missense	c.203	p.R68H	1.000	NULL	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
SNX17	0	genome.wustl.edu	37	2	27598768	27598768	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	2	27598768	27598768	G	A	SNP	SNX17	NM_014748.2	human	genbank	58_37c	+1	reviewed	missense	c.1034	p.R345H	1.000	NULL	HMMPfam_PX,HMMSmart_PX,superfamily_PX,HMMPfam_FERM_M	-	no_errors
STARD8	0	genome.wustl.edu	37	X	67938428	67938428	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	X	67938428	67938428	C	T	SNP	STARD8	NM_001142503.2	human	genbank	58_37c	+1	reviewed	missense	c.1672	p.R558W	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_START,HMMSmart_SM00234,superfamily_GTPase activation domain GAP,superfamily_Bet v1-like	-	no_errors
TBX3	0	genome.wustl.edu	37	12	115115438	115115439	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	12	115115438	115115439	-	T	INS	TBX3	NM_016569.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.888_887	p.N296fs	1.000:1.000	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
TCTN1	0	genome.wustl.edu	37	12	111085646	111085646	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	12	111085646	111085646	A	C	SNP	TCTN1	NM_001082538.2	human	genbank	58_37c	+1	reviewed	silent	c.1728	p.P576	0.226	NULL	HMMPfam_DUF1619	-	no_errors
TICAM1	0	genome.wustl.edu	37	19	4817288	4817289	+	In_Frame_Ins	INS	-	-	AGG	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	19	4817288	4817289	-	AGG	INS	TICAM1	NM_182919.2	human	genbank	58_37c	-1	validated	in_frame_ins	c.1102_1101	p.367in_frame_insP	0.000:0.000	NULL	NULL	-	no_errors
USP36	0	genome.wustl.edu	37	17	76798549	76798554	+	In_Frame_Del	DEL	TTTTTC	TTTTTC	-	novel	unknown	TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	TTTTTC	TTTTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	17	76798549	76798554	TTTTTC	-	DEL	USP36	NM_025090.3	human	genbank	58_37c	-1	validated	in_frame_del	c.2879_2874	p.KK959in_frame_del	0.178:0.173:0.043:0.038:0.100:0.107	NULL	HMMPfam_UCH,PatternScan_IG_MHC,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
