Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA3	21	genome.wustl.edu	37	16	2334368	2334368	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	16	2334368	2334368	C	A	SNP	ABCA3	NM_001089.2	human	genbank	58_37c	-1	reviewed	silent	c.3774	p.G1258	0.995	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCC9	10060	genome.wustl.edu	37	12	22035726	22035727	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	12	22035726	22035727	-	G	INS	ABCC9	NM_005691.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1993_1992	p.A664fs	0.000:0.000	NULL	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
APLP2	334	genome.wustl.edu	37	11	129991670	129991670	+	Missense_Mutation	SNP	G	G	T	rs142841183	byCluster;byFrequency	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	11	129991670	129991670	G	T	SNP	APLP2	NM_001642.2	human	genbank	58_37c	+1	validated	missense	c.678	p.E226D	0.001	NULL	HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_Amyloid beta a4 protein copper binding domain (domain 2),superfamily_A heparin-binding domain,HMMPfam_APP_amyloid,PatternScan_A4_EXTRA,PatternScan_A4_INTRA,superfamily_CAPPD an extracellular domain of amyloid beta A4 protein	-	no_errors
APOF	319	genome.wustl.edu	37	12	56755521	56755521	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	12	56755521	56755521	G	T	SNP	APOF	NM_001638.2	human	genbank	58_37c	-1	reviewed	missense	c.469	p.Q157K	0.000	NULL	NULL	-	no_errors
ATP2C1	27032	genome.wustl.edu	37	3	130694222	130694222	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	3	130694222	130694222	T	-	DEL	ATP2C1	NM_001001486.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1460	p.K488fs	1.000	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
BEND4	0	genome.wustl.edu	37	4	42119673	42119673	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	4	42119673	42119673	G	A	SNP	BEND4	NM_207406.3	human	genbank	58_37c	-1	validated	silent	c.1467	p.D489	0.126	HMMPfam_BEN	HMMPfam_BEN	-	no_errors
C9orf43	257169	genome.wustl.edu	37	9	116175849	116175849	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	9	116175849	116175849	G	T	SNP	C9orf43	NM_152786.1	human	genbank	58_37c	+1	predicted	missense	c.76	p.A26S	0.985	NULL	NULL	-	no_errors
CCNB1IP1	57820	genome.wustl.edu	37	14	20781865	20781865	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	14	20781865	20781865	G	C	SNP	CCNB1IP1	NM_021178.3	human	genbank	58_37c	-1	validated	missense	c.393	p.S131R	1.000	NULL	PatternScan_ZF_RING_1	-	no_errors
COL6A2	1292	genome.wustl.edu	37	21	47545207	47545207	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	21	47545207	47545207	G	A	SNP	COL6A2	NM_001849.3	human	genbank	58_37c	+1	reviewed	missense	c.1798	p.E600K	1.000	NULL	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Collagen,superfamily_vWA-like	-	no_errors
CSH2	1443	genome.wustl.edu	37	17	61949915	61949915	+	Missense_Mutation	SNP	C	A	A	rs1811082	byCluster;by1000genomes	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	17	61949915	61949915	C	A	SNP	CSH2	NM_022644.3	human	genbank	58_37c	-1	reviewed	missense	c.478	p.A160S	0.000	superfamily_4_helix_cytokine	HMMPfam_Hormone_1,superfamily_4_helix_cytokine,PatternScan_SOMATOTROPIN_1	-	no_errors
CYP4F8	11283	genome.wustl.edu	37	19	15730474	15730474	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	19	15730474	15730474	C	A	SNP	CYP4F8	ENST00000441682	human	ensembl	58_37c	+1	known	missense	c.426	p.D142E	1.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
DCDC5	196296	genome.wustl.edu	37	11	30953328	30953328	+	Missense_Mutation	SNP	G	A	A	rs150997514	byFrequency	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	11	30953328	30953328	G	A	SNP	DCDC5	XM_002343054.1	human	genbank	58_37c	-1	model	missense	c.124	p.R42W	0.010	NULL	HMMPfam_DCX,HMMSmart_SM00537,superfamily_Doublecortin (DC)	-	no_errors
DTWD2	285605	genome.wustl.edu	37	5	118176639	118176639	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	5	118176639	118176639	T	A	SNP	DTWD2	NM_173666.2	human	genbank	58_37c	-1	validated	missense	c.870	p.E290D	0.994	NULL	HMMPfam_DTW	-	no_errors
E4F1	1877	genome.wustl.edu	37	16	2273638	2273638	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	16	2273638	2273638	G	A	SNP	E4F1	NM_004424.3	human	genbank	58_37c	+1	reviewed	silent	c.24	p.R8	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ELN	2006	genome.wustl.edu	37	7	73474233	73474233	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	7	73474233	73474233	G	C	SNP	ELN	NM_000501.2	human	genbank	58_37c	+1	reviewed	missense	c.1432	p.G478R	0.809	NULL	PatternScan_ENDONUCLEASE_III_2,PatternScan_HEXAPEP_TRANSFERASES	-	no_errors
ENSG00000212664	0	genome.wustl.edu	37	15	71633600	71633600	+	Missense_Mutation	SNP	G	G	A	rs7178754	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	15	71633600	71633600	G	A	SNP	ENSG00000212664	ENST00000401798	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-71633600	NULL	1.000	-	-	-	no_coding_region:pseudogene
ENSG00000247354	0	genome.wustl.edu	37	1	211748727	211748727	+	RNA	SNP	G	G	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	1	211748727	211748727	G	C	SNP	SLC30A1	NM_021194.2	human	genbank	58_37c	-1	validated	3_prime_untranslated_region	c.*3	NULL	1.000	-	-	-	no_errors
FAM38A	9780	genome.wustl.edu	37	16	88782406	88782406	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	16	88782406	88782406	C	T	SNP	FAM38A	ENST00000451779	human	ensembl	58_37c	-1	known	silent	c.5862	p.L1954	1.000	NULL	PatternScan_IG_MHC	-	no_errors
FBXO10	26267	genome.wustl.edu	37	9	37512576	37512576	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	9	37512576	37512576	T	G	SNP	FBXO10	NM_012166.2	human	genbank	58_37c	-1	validated	missense	c.2839	p.S947R	1.000	NULL	HMMPfam_F-box,HMMSmart_FBOX,HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like,superfamily_SSF81383	-	no_errors
GPHN	10243	genome.wustl.edu	37	14	67390979	67390979	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	14	67390979	67390979	C	T	SNP	GPHN	NM_020806.4	human	genbank	58_37c	+1	reviewed	silent	c.798	p.I266	1.000	NULL	HMMPfam_MoCF_biosynth,superfamily_MoCF_biosynth,HMMPfam_MoeA_N,superfamily_MoeA_N,HMMPfam_MoeA_C,superfamily_MoeA_C,PatternScan_MOCF_BIOSYNTHESIS_1,PatternScan_MOCF_BIOSYNTHESIS_2	-	no_errors
HECTD1	25831	genome.wustl.edu	37	14	31637616	31637616	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	14	31637616	31637616	C	T	SNP	HECTD1	NM_015382.2	human	genbank	58_37c	-1	validated	missense	c.1510	p.E504K	1.000	superfamily_ARM repeat	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_Galactose-binding domain-like,HMMPfam_MIB_HERC2,HMMPfam_Sad1_UNC,superfamily_ARM repeat	-	no_errors
HIST2H2AC	8338	genome.wustl.edu	37	1	149858815	149858815	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	1	149858815	149858815	G	A	SNP	HIST2H2AC	NM_003517.2	human	genbank	58_37c	+1	reviewed	silent	c.291	p.L97	0.978	HMMSmart_SM00414,superfamily_Histone-fold	HMMSmart_SM00414,PatternScan_HISTONE_H2A,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
HMGN5	79366	genome.wustl.edu	37	X	80370453	80370453	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	X	80370453	80370453	C	T	SNP	HMGN5	NM_030763.2	human	genbank	58_37c	-1	reviewed	missense	c.544	p.G182R	0.000	NULL	HMMPfam_HMG14_17,HMMSmart_SM00527,PatternScan_HMG14_17	-	no_errors
HRNR	388697	genome.wustl.edu	37	1	152186053	152186053	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	1	152186053	152186053	A	G	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	silent	c.8052	p.Y2684	0.000	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
IL23R	149233	genome.wustl.edu	37	1	67635217	67635217	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	1	67635217	67635217	G	T	SNP	IL23R	NM_144701.2	human	genbank	58_37c	+1	reviewed	missense	c.263	p.W88L	0.007	NULL	HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
IQCF6	0	genome.wustl.edu	37	3	51812782	51812789	+	Frame_Shift_Del	DEL	GCCTGCGG	GCCTGCGG	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	GCCTGCGG	GCCTGCGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	3	51812782	51812789	GCCTGCGG	-	DEL	IQCF6	NM_001143833.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.181_174	p.R59fs	0.260:0.260:0.876:0.936:0.979:0.994:1.000:1.000	HMMPfam_IQ	HMMPfam_IQ	-	no_errors
IRS4	8471	genome.wustl.edu	37	X	107976825	107976825	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	X	107976825	107976825	C	A	SNP	IRS4	NM_003604.2	human	genbank	58_37c	-1	reviewed	missense	c.2750	p.S917I	0.906	NULL	HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729	-	no_errors
KCNA6	3742	genome.wustl.edu	37	12	4919815	4919815	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	12	4919815	4919815	G	T	SNP	KCNA6	NM_002235.3	human	genbank	58_37c	+1	reviewed	missense	c.608	p.G203V	0.768	superfamily_SSF81324	HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324	-	no_errors
KIAA2022	340533	genome.wustl.edu	37	X	73963226	73963226	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	X	73963226	73963226	C	A	SNP	KIAA2022	NM_001008537.2	human	genbank	58_37c	-1	validated	missense	c.1166	p.G389V	0.012	NULL	NULL	-	no_errors
KLHL3	26249	genome.wustl.edu	37	5	136974658	136974658	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	5	136974658	136974658	G	C	SNP	KLHL3	NM_017415.2	human	genbank	58_37c	-1	validated	silent	c.1203	p.G401	1.000	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LAMA1	284217	genome.wustl.edu	37	18	6978265	6978265	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	18	6978265	6978265	A	G	SNP	LAMA1	NM_005559.2	human	genbank	58_37c	-1	validated	silent	c.6120	p.S2040	0.000	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_II	HMMPfam_Laminin_B,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,superfamily_EGF/Laminin	-	no_errors
LCK	3932	genome.wustl.edu	37	1	32742302	32742302	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	1	32742302	32742302	G	A	SNP	LCK	NM_001042771.1	human	genbank	58_37c	+1	reviewed	silent	c.879	p.K293	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain	-	no_errors
LIF	3976	genome.wustl.edu	37	22	30640840	30640840	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	22	30640840	30640840	A	C	SNP	LIF	NM_002309.3	human	genbank	58_37c	-1	reviewed	missense	c.102	p.C34W	0.004	HMMPfam_LIF_OSM,HMMSmart_SM00080,superfamily_4-helical cytokines	HMMPfam_LIF_OSM,HMMSmart_SM00080,superfamily_4-helical cytokines,PatternScan_LIF_OSM	-	no_errors
LMTK3	114783	genome.wustl.edu	37	19	49004803	49004820	+	Frame_Shift_Del	DEL	TGCGCAGGGCCAGGTCGC	TGCGCAGGGCCAGGTCGC	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	TGCGCAGGGCCAGGTCGC	TGCGCAGGGCCAGGTCGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	19	49004803	49004820	TGCGCAGGGCCAGGTCGC	-	DEL	LMTK3	NM_001080434.1	human	genbank	58_37c	-1	provisional	frame_shift_del	c.898_882	p.S294fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP	-	no_errors
LOC100288367	0	genome.wustl.edu	37	15	84948710	84948710	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	15	84948710	84948710	T	G	SNP	LOC100288367	XM_002343378.1	human	genbank	58_37c	+1	model	missense	c.223	p.L75V	0.239	NULL	NULL	-	no_errors
LPHN3	23284	genome.wustl.edu	37	4	62812716	62812716	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	4	62812716	62812716	A	-	DEL	LPHN3	NM_015236.4	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.2300	p.A768fs	1.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_Gal_Lectin,HMMPfam_HRM,HMMSmart_SM00008,HMMPfam_OLF,HMMSmart_SM00284,HMMPfam_Latrophilin,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Family A G protein-coupled receptor-like	-	no_errors
LRRC24	441381	genome.wustl.edu	37	8	145748740	145748740	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	8	145748740	145748740	C	T	SNP	LRRC24	NM_001024678.3	human	genbank	58_37c	-1	validated	missense	c.661	p.E221K	0.694	HMMSmart_SM00082,superfamily_L domain-like	HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
MAN2A1	4124	genome.wustl.edu	37	5	109202637	109202637	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	5	109202637	109202637	A	G	SNP	MAN2A1	NM_002372.2	human	genbank	58_37c	+1	reviewed	missense	c.3373	p.N1125D	1.000	HMMPfam_Glyco_hydro_38C	HMMPfam_Glyco_hydro_38,superfamily_Gal_mut_like,superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38C,HMMPfam_Alpha-mann_mid,superfamily_SSF88688	-	no_errors
MS4A14	84689	genome.wustl.edu	37	11	60165424	60165424	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	11	60165424	60165424	A	T	SNP	MS4A14	NM_032597.3	human	genbank	58_37c	+1	validated	missense	c.238	p.T80S	0.000	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9090622	9090622	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	19	9090622	9090622	C	G	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.1193	p.G398A	0.002	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MYO1H	283446	genome.wustl.edu	37	12	109841786	109841786	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	12	109841786	109841786	G	A	SNP	MYO1H	NM_001101421.3	human	genbank	58_37c	+1	provisional	splice_site	c.703-1	e6-1	1.000	-	-	-	no_errors
NEK11	79858	genome.wustl.edu	37	3	130947412	130947420	+	In_Frame_Del	DEL	TGATGCATT	TGATGCATT	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	TGATGCATT	TGATGCATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	3	130947412	130947420	TGATGCATT	-	DEL	NEK11	NM_024800.4	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1440_1448	p.AFD482in_frame_del	0.200:0.389:0.363:0.017:0.007:0.000:0.000:0.976:1.000	NULL	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase	-	no_errors
PCNT	5116	genome.wustl.edu	37	21	47783642	47783642	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	21	47783642	47783642	A	G	SNP	PCNT	NM_006031.5	human	genbank	58_37c	+1	reviewed	missense	c.2402	p.D801G	0.927	NULL	HMMPfam_PACT_coil_coil	-	no_errors
PDE3A	5139	genome.wustl.edu	37	12	20766614	20766614	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	12	20766614	20766614	G	C	SNP	PDE3A	NM_000921.3	human	genbank	58_37c	+1	validated	missense	c.1249	p.D417H	1.000	NULL	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_HDc,superfamily_SSF109604	-	no_errors
PDS5A	23244	genome.wustl.edu	37	4	39864689	39864689	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	4	39864689	39864689	T	G	SNP	PDS5A	NM_001100399.1	human	genbank	58_37c	-1	reviewed	missense	c.2771	p.E924A	1.000	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
PKHD1	5314	genome.wustl.edu	37	6	51609274	51609274	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	6	51609274	51609274	C	T	SNP	PKHD1	NM_138694.3	human	genbank	58_37c	-1	reviewed	silent	c.10065	p.K3355	0.982	NULL	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8	-	no_errors
PKHD1L1	93035	genome.wustl.edu	37	8	110467029	110467029	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	8	110467029	110467029	T	C	SNP	PKHD1L1	NM_177531.4	human	genbank	58_37c	+1	validated	silent	c.6822	p.P2274	0.742	HMMPfam_G8	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen	-	no_errors
PLA2G6	8398	genome.wustl.edu	37	22	38512192	38512210	+	Frame_Shift_Del	DEL	TCAGACAGTGTCCCTGTCA	TCAGACAGTGTCCCTGTCA	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	TCAGACAGTGTCCCTGTCA	TCAGACAGTGTCCCTGTCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	22	38512192	38512210	TCAGACAGTGTCCCTGTCA	-	DEL	PLA2G6	NM_003560.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1769_1751	p.L584fs	1.000:1.000:0.898:0.994:1.000:1.000:1.000:0.998:0.390:0.997:1.000:1.000:1.000:0.994:0.004:1.000:1.000:1.000:1.000	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like	-	no_errors
PRKAR2B	5577	genome.wustl.edu	37	7	106786812	106786812	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	7	106786812	106786812	A	G	SNP	PRKAR2B	NM_002736.2	human	genbank	58_37c	+1	reviewed	missense	c.647	p.D216G	1.000	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_RIIa,HMMSmart_RIIa,superfamily_cAMP-dep_prot_kin_reg_I/II_a/b,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding	-	no_errors
RARA	5914	genome.wustl.edu	37	17	38508182	38508184	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	17	38508182	38508184	AAG	-	DEL	RARA	NM_000964.2	human	genbank	58_37c	+1	validated	in_frame_del	c.490_492	p.K167in_frame_del	1.000:1.000:1.000	superfamily_Nuclear receptor ligand-binding domain	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
RDH5	5959	genome.wustl.edu	37	12	56115089	56115089	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	12	56115089	56115089	G	T	SNP	RDH5	NM_002905.3	human	genbank	58_37c	+1	reviewed	missense	c.121	p.G41W	1.000	HMMPfam_adh_short,superfamily_NAD(P)-bd	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-bd	-	no_errors
RIMS3	9783	genome.wustl.edu	37	1	41098846	41098846	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	1	41098846	41098846	A	T	SNP	RIMS3	NM_014747.2	human	genbank	58_37c	-1	validated	missense	c.367	p.F123I	1.000	NULL	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
ROS1	6098	genome.wustl.edu	37	6	117609902	117609902	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	6	117609902	117609902	G	C	SNP	ROS1	NM_002944.2	human	genbank	58_37c	-1	reviewed	missense	c.6797	p.T2266R	1.000	NULL	HMMSmart_LY,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF63825	-	no_errors
S100A10	6281	genome.wustl.edu	37	1	151958603	151958603	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	1	151958603	151958603	A	C	SNP	S100A10	NM_002966.2	human	genbank	58_37c	-1	reviewed	missense	c.104	p.M35R	1.000	HMMPfam_S_100,superfamily_EF-hand	PatternScan_S100_CABP,HMMPfam_S_100,superfamily_EF-hand	-	no_errors
SALL1	6299	genome.wustl.edu	37	16	51173646	51173646	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	16	51173646	51173646	C	T	SNP	SALL1	NM_002968.2	human	genbank	58_37c	-1	reviewed	missense	c.2487	p.M829I	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SC4MOL	6307	genome.wustl.edu	37	4	166254530	166254530	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	4	166254530	166254530	C	G	SNP	SC4MOL	NM_006745.3	human	genbank	58_37c	+1	reviewed	missense	c.8	p.T3R	0.002	NULL	HMMPfam_FA_hydroxylase	-	no_errors
SCAF1	58506	genome.wustl.edu	37	19	50157992	50157992	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	19	50157992	50157992	C	G	SNP	SCAF1	NM_021228.2	human	genbank	58_37c	+1	validated	silent	c.3483	p.P1161	1.000	NULL	NULL	-	no_errors
SCN2A	6326	genome.wustl.edu	37	2	166152454	166152454	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	2	166152454	166152454	C	T	SNP	SCN2A	NM_001040142.1	human	genbank	58_37c	+1	reviewed	missense	c.121	p.R41C	1.000	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SEC24D	9871	genome.wustl.edu	37	4	119689345	119689345	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	4	119689345	119689345	C	G	SNP	SEC24D	NM_014822.2	human	genbank	58_37c	-1	reviewed	missense	c.1163	p.C388S	1.000	HMMPfam_zf-Sec23_Sec24,superfamily_beta-sandwich domain of Sec23/24	HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24,superfamily_C-terminal gelsolin-like domain of Sec23/24	-	no_errors
SEMA3D	223117	genome.wustl.edu	37	7	84671502	84671502	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	7	84671502	84671502	A	-	DEL	SEMA3D	NM_152754.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.961	p.Y321fs	1.000	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMSmart_IG,HMMSmart_PSI,HMMPfam_V-set,superfamily_Plexin-like_fold,superfamily_SSF48726	-	no_errors
TBC1D19	55296	genome.wustl.edu	37	4	26685350	26685350	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	4	26685350	26685350	G	T	SNP	TBC1D19	NM_018317.2	human	genbank	58_37c	+1	validated	missense	c.870	p.L290F	1.000	HMMSmart_SM00164	HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
TFAP2B	7021	genome.wustl.edu	37	6	50796376	50796376	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	6	50796376	50796376	G	C	SNP	TFAP2B	NM_003221.3	human	genbank	58_37c	+1	reviewed	missense	c.585	p.Q195H	1.000	NULL	HMMPfam_TF_AP-2	-	no_errors
TNS3	64759	genome.wustl.edu	37	7	47440029	47440029	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	7	47440029	47440029	C	A	SNP	TNS3	NM_022748.10	human	genbank	58_37c	-1	validated	missense	c.880	p.V294F	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2	HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,HMMSmart_SM00462,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTB,HMMPfam_PTEN_C2,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	G	G	rs28934576	byCluster	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	17	7577120	7577120	C	G	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.818	p.R273P	0.864	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TXNDC6	347736	genome.wustl.edu	37	3	138023764	138023764	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	3	138023764	138023764	C	T	SNP	TXNDC6	NM_178130.2	human	genbank	58_37c	-1	provisional	missense	c.559	p.V187I	0.033	HMMPfam_NDK,HMMSmart_NDK,superfamily_NDK	HMMPfam_NDK,HMMSmart_NDK,superfamily_NDK,superfamily_Thiordxn-like_fd,PatternScan_THIOREDOXIN_1	-	no_errors
WDR44	54521	genome.wustl.edu	37	X	117576637	117576637	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	X	117576637	117576637	G	A	SNP	WDR44	NM_019045.4	human	genbank	58_37c	+1	reviewed	missense	c.2378	p.S793N	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
ZFHX4	79776	genome.wustl.edu	37	8	77767858	77767858	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	8	77767858	77767858	A	G	SNP	ZFHX4	NM_024721.4	human	genbank	58_37c	+1	validated	missense	c.8566	p.T2856A	0.996	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF506	440515	genome.wustl.edu	37	19	19905658	19905658	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	19	19905658	19905658	A	G	SNP	ZNF506	NM_001099269.2	human	genbank	58_37c	-1	validated	silent	c.1038	p.C346	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF518A	9849	genome.wustl.edu	37	10	97919007	97919045	+	In_Frame_Del	DEL	TGGGATGGTTTTAACACTTAATAATGGGAAACTTGAAGG	TGGGATGGTTTTAACACTTAATAATGGGAAACTTGAAGG	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	TGGGATGGTTTTAACACTTAATAATGGGAAACTTGAAGG	TGGGATGGTTTTAACACTTAATAATGGGAAACTTGAAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	10	97919007	97919045	TGGGATGGTTTTAACACTTAATAATGGGAAACTTGAAGG	-	DEL	ZNF518A	ENST00000371192	human	ensembl	58_37c	+1	known	in_frame_del	c.2928_2966	p.GMVLTLNNGKLEG977in_frame_del	1.000:1.000:1.000:0.999:1.000:1.000:1.000:0.993:1.000:1.000:0.999:1.000:0.992:0.992:0.987:0.916:0.887:0.947:0.947:0.987:0.987:0.986:0.987:0.982:0.986:0.973:0.960:0.732:0.654:0.602:0.389:0.241:0.244:0.972:1.000:0.998:0.934:0.468:0.312	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF577	84765	genome.wustl.edu	37	19	52381666	52381666	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bee5b9c8-739e-4530-b140-cd2b898d7afd	b95ee272-a889-47da-8366-353b57fb93b8	19	52381666	52381666	T	C	SNP	ZNF577	NM_032679.2	human	genbank	58_37c	-1	validated	missense	c.163	p.N55D	0.955	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
