Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC2	1244	genome.wustl.edu	37	10	101595869	101595869	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	10	101595869	101595869	C	T	SNP	ABCC2	NM_000392.3	human	genbank	58_37c	+1	reviewed	missense	c.3436	p.R1146C	1.000	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ADCY9	115	genome.wustl.edu	37	16	4042255	4042255	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	16	4042255	4042255	C	A	SNP	ADCY9	NM_001116.2	human	genbank	58_37c	-1	reviewed	missense	c.2099	p.G700V	1.000	NULL	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
ALKBH7	84266	genome.wustl.edu	37	19	6374526	6374526	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	19	6374526	6374526	G	A	SNP	ALKBH7	NM_032306.2	human	genbank	58_37c	+1	provisional	missense	c.429	p.M143I	1.000	NULL	NULL	-	no_errors
BCL9	607	genome.wustl.edu	37	1	147095879	147095879	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	147095879	147095879	C	T	SNP	BCL9	NM_004326.2	human	genbank	58_37c	+1	reviewed	missense	c.3400	p.R1134W	1.000	NULL	NULL	-	no_errors
BTBD12	84464	genome.wustl.edu	37	16	3640194	3640194	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	16	3640194	3640194	C	A	SNP	BTBD12	NM_032444.2	human	genbank	58_37c	-1	provisional	missense	c.3445	p.D1149Y	0.000	NULL	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB	-	no_errors
C15orf2	23742	genome.wustl.edu	37	15	24923646	24923646	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	15	24923646	24923646	C	-	DEL	C15orf2	NM_018958.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.2632	p.Q878fs	0.001	NULL	NULL	-	no_errors
C17orf104	284071	genome.wustl.edu	37	17	42745436	42745436	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	17	42745436	42745436	C	G	SNP	C17orf104	NM_001145080.2	human	genbank	58_37c	+1	validated	nonsense	c.2157	p.Y719*	0.992	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
CALML6	163688	genome.wustl.edu	37	1	1848267	1848267	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	1848267	1848267	C	T	SNP	CALML6	NM_138705.2	human	genbank	58_37c	+1	validated	silent	c.330	p.S110	0.213	superfamily_SSF47473	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
CELA2B	51032	genome.wustl.edu	37	1	15802980	15802980	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	15802980	15802980	G	A	SNP	CELA2B	NM_015849.2	human	genbank	58_37c	+1	reviewed	silent	c.69	p.A23	0.000	superfamily_Pept_Ser_Cys	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
DAO	1610	genome.wustl.edu	37	12	109288102	109288102	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	12	109288102	109288102	C	T	SNP	DAO	NM_001917.4	human	genbank	58_37c	+1	reviewed	nonsense	c.571	p.R191*	1.000	HMMPfam_DAO,superfamily_Nucleotide-binding domain	PatternScan_AA_TRNA_LIGASE_I,HMMPfam_DAO,PatternScan_DAO,superfamily_Nucleotide-binding domain,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
DNAH5	1767	genome.wustl.edu	37	5	13737575	13737575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	5	13737575	13737575	C	T	SNP	DNAH5	NM_001369.2	human	genbank	58_37c	-1	reviewed	missense	c.11241	p.M3747I	0.999	NULL	HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540	-	no_errors
ENSG00000213985	0	genome.wustl.edu	37	19	20369546	20369546	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	19	20369546	20369546	A	C	SNP	ENSG00000213985	ENST00000397155	human	ensembl	58_37c	+1	known	silent	c.507	p.P169	0.995	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_ACT_LIKE,superfamily_SSF53067	-	no_errors
FEZF2	55079	genome.wustl.edu	37	3	62356989	62356989	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	3	62356989	62356989	C	A	SNP	FEZF2	NM_018008.3	human	genbank	58_37c	-1	validated	silent	c.1023	p.A341	0.989	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
KIF2C	11004	genome.wustl.edu	37	1	45213334	45213334	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	45213334	45213334	G	A	SNP	KIF2C	NM_006845.3	human	genbank	58_37c	+1	validated	missense	c.278	p.R93Q	1.000	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KLF17	128209	genome.wustl.edu	37	1	44595388	44595388	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	44595388	44595388	G	A	SNP	KLF17	NM_173484.3	human	genbank	58_37c	+1	validated	missense	c.445	p.G149R	0.004	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
LOC100289412	0	genome.wustl.edu	37	9	135985448	135985448	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	9	135985448	135985448	C	A	SNP	LOC100289412	XM_002344240.1	human	genbank	58_37c	+1	model	missense	c.767	p.T256N	0.000	NULL	NULL	-	no_errors
MAPKBP1	23005	genome.wustl.edu	37	15	42104263	42104263	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	15	42104263	42104263	G	A	SNP	MAPKBP1	NM_001128608.1	human	genbank	58_37c	+1	validated	missense	c.436	p.A146T	0.953	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,PatternScan_PTS_HPR_SER,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
MGAM	8972	genome.wustl.edu	37	7	141765159	141765159	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	7	141765159	141765159	G	A	SNP	MGAM	NM_004668.2	human	genbank	58_37c	+1	reviewed	silent	c.4509	p.Q1503	1.000	HMMPfam_Glyco_hydro_31	HMMPfam_Glyco_hydro_31,HMMPfam_Trefoil	-	no_errors
MGAM	8972	genome.wustl.edu	37	7	141765575	141765575	+	Missense_Mutation	SNP	A	A	T	rs4507684	byCluster;by1000genomes	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	7	141765575	141765575	A	T	SNP	MGAM	ENST00000475668	human	ensembl	58_37c	+1	known	missense	c.4714	p.M1572L	1.000	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL	-	no_errors
NMT1	4836	genome.wustl.edu	37	17	43183002	43183002	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	17	43183002	43183002	C	T	SNP	NMT1	NM_021079.3	human	genbank	58_37c	+1	provisional	nonsense	c.1486	p.Q496*	1.000	superfamily_Acyl-CoA N-acyltransferases (Nat)	HMMPfam_NMT,HMMPfam_NMT_C,PatternScan_NMT_1,PatternScan_NMT_2,superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors
PABPC4L	132430	genome.wustl.edu	37	4	135121651	135121651	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	4	135121651	135121651	C	T	SNP	PABPC4L	NM_001114734.1	human	genbank	58_37c	-1	validated	missense	c.524	p.R175Q	1.000	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors
PCDHGB6	56100	genome.wustl.edu	37	5	140788351	140788351	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	5	140788351	140788351	A	T	SNP	PCDHGB6	NM_018926.2	human	genbank	58_37c	+1	reviewed	missense	c.582	p.L194F	0.046	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PKD1L2	114780	genome.wustl.edu	37	16	81242149	81242150	+	Frame_Shift_Del	DEL	TT	TT	-	rs62734462	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	16	81242149	81242150	TT	-	DEL	PKD1L2	NM_001076780.1	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.707_706	p.N236fs	0.998:0.999	NULL	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	-	no_errors
PLD5	200150	genome.wustl.edu	37	1	242253180	242253180	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	242253180	242253180	G	A	SNP	PLD5	NM_152666.1	human	genbank	58_37c	-1	provisional	silent	c.1311	p.G437	0.000	NULL	HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope,superfamily_SSF56024	-	no_errors
PVRL3	25945	genome.wustl.edu	37	3	110837787	110837787	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	3	110837787	110837787	T	G	SNP	PVRL3	NM_015480.1	human	genbank	58_37c	+1	provisional	missense	c.787	p.L263V	0.998	superfamily_Immunoglobulin	HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
RFX4	5992	genome.wustl.edu	37	12	107078653	107078653	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	12	107078653	107078653	C	T	SNP	RFX4	NM_032491.4	human	genbank	58_37c	+1	reviewed	missense	c.62	p.S21L	0.003	NULL	NULL	-	no_errors
RFXANK	8625	genome.wustl.edu	37	19	19304795	19304795	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	19	19304795	19304795	C	T	SNP	RFXANK	NM_003721.2	human	genbank	58_37c	+1	reviewed	nonsense	c.40	p.Q14*	0.635	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
RGPD3	653489	genome.wustl.edu	37	2	107040513	107040516	+	Frame_Shift_Del	DEL	TAGA	TAGA	-	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	TAGA	TAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	2	107040513	107040516	TAGA	-	DEL	RGPD3	NM_001144013.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.3910_3907	p.K1304fs	1.000:0.998:1.000:1.000	NULL	HMMPfam_Ran_BP1,HMMSmart_RanBD,HMMPfam_GRIP,HMMSmart_Grip,HMMPfam_TPR_1,superfamily_SSF48452,superfamily_SSF50729	-	no_errors
RGS5	8490	genome.wustl.edu	37	1	163117185	163117185	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	163117185	163117185	C	T	SNP	RGS5	NM_003617.3	human	genbank	58_37c	-1	validated	missense	c.493	p.D165N	1.000	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS	-	no_errors
SMCHD1	23347	genome.wustl.edu	37	18	2743899	2743899	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	18	2743899	2743899	C	T	SNP	SMCHD1	NM_015295.2	human	genbank	58_37c	+1	validated	silent	c.3774	p.L1258	0.575	NULL	HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_SMC_hinge,superfamily_Smc hinge domain	-	no_errors
TEK	7010	genome.wustl.edu	37	9	27169494	27169494	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	9	27169494	27169494	G	A	SNP	TEK	NM_000459.3	human	genbank	58_37c	+1	reviewed	silent	c.495	p.V165	1.000	NULL	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_fn3,HMMSmart_FN3,HMMSmart_EGF,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Ig_Tie2_1,superfamily_SSF48726	-	no_errors
TMEM9B	56674	genome.wustl.edu	37	11	8969901	8969901	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	11	8969901	8969901	T	A	SNP	TMEM9B	NM_020644.1	human	genbank	58_37c	-1	provisional	missense	c.563	p.K188M	1.000	HMMPfam_Tmemb_9	HMMPfam_Tmemb_9	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578429	7578429	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	17	7578429	7578429	C	-	DEL	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.501	p.Q167fs	0.986	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
UHRF1BP1L	23074	genome.wustl.edu	37	12	100482727	100482727	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	12	100482727	100482727	T	C	SNP	UHRF1BP1L	NM_015054.1	human	genbank	58_37c	-1	validated	silent	c.987	p.L329	1.000	NULL	NULL	-	no_errors
UNC45A	55898	genome.wustl.edu	37	15	91496180	91496180	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	15	91496180	91496180	G	T	SNP	UNC45A	NM_018671.3	human	genbank	58_37c	+1	validated	missense	c.2325	p.K775N	1.000	superfamily_ARM repeat	HMMPfam_TPR_1,HMMPfam_TPR_2,superfamily_ARM repeat,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
VPS53	55275	genome.wustl.edu	37	17	489514	489514	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	17	489514	489514	C	A	SNP	VPS53	NM_001128159.1	human	genbank	58_37c	-1	reviewed	missense	c.1309	p.D437Y	1.000	HMMPfam_Vps53_N	HMMPfam_Vps53_N	-	no_errors
WASF3	10810	genome.wustl.edu	37	13	27259977	27259977	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	13	27259977	27259977	G	A	SNP	WASF3	NM_006646.5	human	genbank	58_37c	+1	reviewed	missense	c.1504	p.D502N	1.000	NULL	HMMPfam_WH2,HMMSmart_SM00246	-	no_errors
WSB2	55884	genome.wustl.edu	37	12	118472017	118472017	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	12	118472017	118472017	G	T	SNP	WSB2	NM_018639.3	human	genbank	58_37c	-1	reviewed	missense	c.1199	p.T400K	1.000	HMMPfam_SOCS_box,HMMSmart_SOCS	HMMPfam_SOCS_box,HMMSmart_SOCS,HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
