Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
C11orf24	0	genome.wustl.edu	37	11	68031210	68031210	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	11	68031210	68031210	C	G	SNP	C11orf24	NM_022338.3	human	genbank	58_37c	-1	validated	missense	c.26	p.W9S	0.001	NULL	PatternScan_ALDOKETO_REDUCTASE_3	-	no_errors
CACNA1B	0	genome.wustl.edu	37	9	140865931	140865931	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	9	140865931	140865931	G	A	SNP	CACNA1B	NM_000718.2	human	genbank	58_37c	+1	validated	missense	c.1430	p.R477H	1.000	superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CWC25	0	genome.wustl.edu	37	17	36977158	36977158	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	17	36977158	36977158	C	T	SNP	CWC25	NM_017748.3	human	genbank	58_37c	-1	provisional	missense	c.187	p.V63I	0.998	NULL	HMMPfam_Cir_N	-	no_errors
ENSG00000198804	0	genome.wustl.edu	37	MT	6164	6164	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	MT	6164	6164	C	T	SNP	ENSG00000198804	ENST00000361624	human	ensembl	58_37c	+1	known	silent	c.261	p.I87	NULL	HMMPfam_COX1,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	mismatch_between_exon_seq_and_reference
ENSG00000210164	0	genome.wustl.edu	37	MT	10014	10014	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	MT	10014	10014	G	A	SNP	ENSG00000210164	ENST00000387429	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000211459	0	genome.wustl.edu	37	MT	677	677	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	MT	677	677	C	T	SNP	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000232471	0	genome.wustl.edu	37	4	49553179	49553182	+	Splice_Site	DEL	GAAG	GAAG	-	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	GAAG	GAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	4	49553179	49553182	GAAG	-	DEL	ENSG00000232471	ENST00000448996	human	ensembl	58_37c	+1	known	splice_site_del	c.NULL	NULL	0.008:0.013:0.016:0.017	-	-	-	no_coding_region:pseudogene
ENSG00000249665	0	genome.wustl.edu	37	8	86786357	86786357	+	RNA	SNP	C	C	A	rs60098459	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	8	86786357	86786357	C	A	SNP	ENSG00000249665	ENST00000503540	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.034	-	-	-	no_errors
FOXK2	0	genome.wustl.edu	37	17	80525932	80525932	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	17	80525932	80525932	C	T	SNP	FOXK2	NM_004514.3	human	genbank	58_37c	+1	reviewed	missense	c.617	p.A206V	1.000	NULL	"HMMPfam_FHA,HMMSmart_SM00240,HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_SMAD/FHA domain,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
GPR123	0	genome.wustl.edu	37	10	134898410	134898410	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	10	134898410	134898410	C	A	SNP	GPR123	ENST00000392609	human	ensembl	58_37c	+1	known	missense	c.935	p.A312D	0.000	NULL	HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_start_codon
HIPK1	0	genome.wustl.edu	37	1	114516067	114516067	+	Missense_Mutation	SNP	G	G	A	rs142071670	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	1	114516067	114516067	G	A	SNP	HIPK1	NM_198268.1	human	genbank	58_37c	+1	reviewed	missense	c.3566	p.R1189Q	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
HNRNPH2	0	genome.wustl.edu	37	X	100668309	100668309	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	X	100668309	100668309	C	T	SNP	HNRNPH2	NM_001032393.1	human	genbank	58_37c	+1	reviewed	nonsense	c.1333	p.Q445*	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_zf-RNPHF,superfamily_RNA-binding domain RBD	-	no_errors
KCNA5	0	genome.wustl.edu	37	12	5154181	5154181	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	12	5154181	5154181	C	A	SNP	KCNA5	NM_002234.2	human	genbank	58_37c	+1	reviewed	missense	c.868	p.Q290K	0.135	superfamily_Voltage-gated potassium channels	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels	-	no_errors
KCNK9	0	genome.wustl.edu	37	8	140714982	140714982	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	8	140714982	140714982	T	C	SNP	KCNK9	NM_016601.2	human	genbank	58_37c	-1	reviewed	missense	c.254	p.Y85C	1.000	HMMPfam_Ion_trans_2,superfamily_SSF81324	HMMPfam_Ion_trans_2,superfamily_SSF81324	-	no_errors
KIAA0196	0	genome.wustl.edu	37	8	126056088	126056088	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	8	126056088	126056088	C	T	SNP	KIAA0196	NM_014846.3	human	genbank	58_37c	-1	reviewed	silent	c.2829	p.A943	0.921	HMMPfam_Strumpellin	HMMPfam_Strumpellin	-	no_errors
LOC646316	0	genome.wustl.edu	37	4	137277411	137277411	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	4	137277411	137277411	G	A	SNP	LOC646316	XR_039453.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.009	-	-	-	pseudogene
LOC728297	0	genome.wustl.edu	37	9	45362640	45362642	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	9	45362640	45362642	AGA	-	DEL	LOC728297	XM_001127111.2	human	genbank	58_37c	+1	model	in_frame_del	c.614_616	p.K206in_frame_del	1.000:1.000:1.000	HMMPfam_7tm_1	HMMPfam_7tm_1	-	no_errors
MLL3	0	genome.wustl.edu	37	7	151860728	151860728	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	7	151860728	151860728	G	A	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	nonsense	c.9934	p.Q3312*	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1251806	1251806	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	11	1251806	1251806	G	A	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	silent	c.1455	p.T485	0.192	HMMPfam_VWD,HMMSmart_SM00216	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
NBPF1	0	genome.wustl.edu	37	1	16899669	16899669	+	Silent	SNP	C	T	T	rs4127102	by2Hit2Allele	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	1	16899669	16899669	C	T	SNP	NBPF1	NM_017940.3	human	genbank	58_37c	-1	predicted	silent	c.2418	p.E806	0.002	NULL	HMMPfam_DUF1220	-	no_errors
NEGR1	0	genome.wustl.edu	37	1	72241932	72241932	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	1	72241932	72241932	C	T	SNP	NEGR1	NM_173808.2	human	genbank	58_37c	-1	validated	missense	c.458	p.G153E	1.000	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
NFATC2	0	genome.wustl.edu	37	20	50048992	50048992	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	20	50048992	50048992	C	T	SNP	NFATC2	NM_173091.2	human	genbank	58_37c	-1	reviewed	silent	c.2334	p.A778	0.070	NULL	HMMPfam_TIG,HMMSmart_SM00429,superfamily_p53-like transcription factors,HMMPfam_RHD,superfamily_E set domains	-	no_errors
NPIPL2	0	genome.wustl.edu	37	16	74419288	74419288	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	16	74419288	74419288	T	C	SNP	NPIPL2	XM_002344099.1	human	genbank	58_37c	+1	model	missense	c.298	p.S100P	0.043	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
OR2W5	0	genome.wustl.edu	37	1	247655187	247655187	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	1	247655187	247655187	G	A	SNP	OR2W5	NM_001004698.2	human	genbank	58_37c	+1	validated	missense	c.758	p.R253Q	0.375	HMMPfam_7tm_1	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PCDHGA11	0	genome.wustl.edu	37	5	140802650	140802650	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	5	140802650	140802650	C	T	SNP	PCDHGA11	NM_018914.2	human	genbank	58_37c	+1	reviewed	missense	c.1856	p.A619V	0.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PRR16	0	genome.wustl.edu	37	5	120022380	120022380	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	5	120022380	120022380	G	A	SNP	PRR16	NM_016644.1	human	genbank	58_37c	+1	provisional	silent	c.822	p.R274	1.000	NULL	NULL	-	no_errors
PRRG2	0	genome.wustl.edu	37	19	50091757	50091757	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	50091757	50091757	G	A	SNP	PRRG2	NM_000951.2	human	genbank	58_37c	+1	validated	missense	c.305	p.R102H	0.245	superfamily_VitK_dep_GLA	HMMPfam_Gla,HMMSmart_GLA,PatternScan_GLA_1,superfamily_VitK_dep_GLA	-	no_errors
RECQL	0	genome.wustl.edu	37	12	21639494	21639494	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	12	21639494	21639494	C	T	SNP	RECQL	ENST00000314748	human	ensembl	58_37c	-1	known	missense	c.244	p.D82N	1.000	NULL	NULL	-	no_errors
SAMD4A	0	genome.wustl.edu	37	14	55169153	55169153	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	14	55169153	55169153	G	T	SNP	SAMD4A	NM_015589.4	human	genbank	58_37c	+1	validated	missense	c.567	p.W189C	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain	-	no_errors
SHANK1	0	genome.wustl.edu	37	19	51165718	51165718	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	51165718	51165718	C	T	SNP	SHANK1	NM_016148.2	human	genbank	58_37c	-1	validated	missense	c.5990	p.R1997Q	1.000	NULL	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_SH3_2	-	no_errors
SLC22A9	0	genome.wustl.edu	37	11	63141114	63141114	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	11	63141114	63141114	A	T	SNP	SLC22A9	NM_080866.2	human	genbank	58_37c	+1	validated	splice_site	c.507-2	e3-2	1.000	-	-	-	no_errors
STUB1	0	genome.wustl.edu	37	16	731865	731865	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	16	731865	731865	C	T	SNP	STUB1	NM_005861.2	human	genbank	58_37c	+1	validated	silent	c.597	p.C199	1.000	NULL	HMMPfam_TPR_1,HMMPfam_U-box,HMMSmart_SM00504,HMMSmart_SM00028,superfamily_TPR-like,superfamily_RING/U-box	-	no_errors
TGM2	0	genome.wustl.edu	37	20	36776418	36776418	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	20	36776418	36776418	C	T	SNP	TGM2	NM_004613.2	human	genbank	58_37c	-1	reviewed	missense	c.626	p.R209H	0.003	superfamily_Cysteine proteinases	HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_SM00460,HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains,PatternScan_TRANSGLUTAMINASES,superfamily_E set domains,superfamily_Cysteine proteinases	-	no_errors
TICAM1	0	genome.wustl.edu	37	19	4817288	4817289	+	In_Frame_Ins	INS	-	-	AGG	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	4817288	4817289	-	AGG	INS	TICAM1	NM_182919.2	human	genbank	58_37c	-1	validated	in_frame_ins	c.1102_1101	p.367in_frame_insP	0.000:0.000	NULL	NULL	-	no_errors
TP53BP2	0	genome.wustl.edu	37	1	223971901	223971901	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	1	223971901	223971901	G	C	SNP	TP53BP2	NM_001031685.2	human	genbank	58_37c	-1	reviewed	missense	c.3279	p.I1093M	0.970	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_ANK	HMMPfam_SH3_1,HMMSmart_SH3,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
UBC	0	genome.wustl.edu	37	12	125396630	125396631	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	12	125396630	125396631	-	G	INS	UBC	NM_021009.4	human	genbank	58_37c	-1	validated	frame_shift_ins	c.1688_1687	p.Q563fs	1.000:1.000	HMMPfam_ubiquitin,HMMSmart_SM00213,PatternScan_UBIQUITIN_1,superfamily_Ubiquitin-like	HMMPfam_ubiquitin,HMMSmart_SM00213,PatternScan_UBIQUITIN_1,superfamily_Ubiquitin-like	-	no_errors
UBE2Q2P1	0	genome.wustl.edu	37	15	85070737	85070738	+	RNA	INS	-	-	A	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	15	85070737	85070738	-	A	INS	UBE2Q2P1	NR_003661.2	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.007:0.009	-	-	-	pseudogene
UBN1	0	genome.wustl.edu	37	16	4924371	4924371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	16	4924371	4924371	C	T	SNP	UBN1	NM_001079514.1	human	genbank	58_37c	+1	validated	missense	c.1960	p.P654S	0.096	NULL	NULL	-	no_errors
UBQLN3	0	genome.wustl.edu	37	11	5530467	5530467	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	11	5530467	5530467	G	A	SNP	UBQLN3	NM_017481.2	human	genbank	58_37c	-1	reviewed	missense	c.322	p.P108S	0.840	NULL	HMMPfam_UBA,HMMPfam_ubiquitin,HMMSmart_UBQ,HMMSmart_STI1,superfamily_UBA_like,HMMSmart_UBA,PatternScan_UBIQUITIN_1,superfamily_SSF54236	-	no_errors
USP53	0	genome.wustl.edu	37	4	120193097	120193097	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	4	120193097	120193097	C	T	SNP	USP53	NM_019050.2	human	genbank	58_37c	+1	validated	silent	c.2082	p.I694	1.000	NULL	HMMPfam_UCH,superfamily_SSF54001	-	no_errors
VRK1	0	genome.wustl.edu	37	14	97299833	97299833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	14	97299833	97299833	G	A	SNP	VRK1	NM_003384.2	human	genbank	58_37c	+1	reviewed	missense	c.25	p.A9T	0.120	NULL	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
ZNF429	0	genome.wustl.edu	37	19	21719514	21719514	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	21719514	21719514	A	G	SNP	ZNF429	NM_001001415.2	human	genbank	58_37c	+1	provisional	missense	c.659	p.K220R	0.713	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF548	0	genome.wustl.edu	37	19	57908526	57908526	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	19	57908526	57908526	C	T	SNP	ZNF548	NM_152909.3	human	genbank	58_37c	+1	validated	silent	c.126	p.A42	0.001	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF623	0	genome.wustl.edu	37	8	144732952	144732952	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A24N-01A-11D-A167-09	TCGA-AR-A24N-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b85b311c-1b29-44e3-8585-6995f9259221	ea4ba75b-b641-4127-8705-e9bc15f24f4c	8	144732952	144732952	T	C	SNP	ZNF623	NM_014789.3	human	genbank	58_37c	+1	validated	missense	c.910	p.S304P	0.036	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
