Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCB11	0	genome.wustl.edu	37	2	169780189	169780189	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	2	169780189	169780189	C	T	SNP	ABCB11	NM_003742.2	human	genbank	58_37c	-1	reviewed	silent	c.3909	p.L1303	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABI3BP	0	genome.wustl.edu	37	3	100569509	100569509	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	3	100569509	100569509	G	A	SNP	ABI3BP	NM_015429.3	human	genbank	58_37c	-1	validated	missense	c.1295	p.T432I	1.000	NULL	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-	no_errors
DAXX	0	genome.wustl.edu	37	6	33288266	33288266	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	6	33288266	33288266	A	C	SNP	DAXX	NM_001141970.1	human	genbank	58_37c	-1	reviewed	missense	c.1178	p.M393R	0.967	HMMPfam_Daxx	HMMPfam_Daxx	-	no_errors
ENSG00000198804	0	genome.wustl.edu	37	MT	6127	6127	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	MT	6127	6127	T	C	SNP	ENSG00000198804	ENST00000361624	human	ensembl	58_37c	+1	known	missense	c.224	p.I75T	NULL	HMMPfam_COX1,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	mismatch_between_exon_seq_and_reference
ENSG00000232637	0	genome.wustl.edu	37	1	146250847	146250847	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	1	146250847	146250847	C	T	SNP	ENSG00000232637	ENST00000423459	human	ensembl	58_37c	-1	known	splice_site	c.115-2	e2-2	0.059	-	-	-	no_errors
FGGY	0	genome.wustl.edu	37	1	60073504	60073504	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	1	60073504	60073504	C	T	SNP	FGGY	NM_001113411.1	human	genbank	58_37c	+1	validated	silent	c.933	p.G311	0.002	superfamily_SSF53067	HMMPfam_FGGY_N,HMMPfam_FGGY_C,superfamily_SSF53067	-	no_errors
GSTM3	0	genome.wustl.edu	37	1	110279617	110279617	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	1	110279617	110279617	G	A	SNP	GSTM3	NR_024537.1	human	genbank	58_37c	-1	reviewed	rna	NULL	NULL	1.000	-	-	-	no_errors
IMPG2	0	genome.wustl.edu	37	3	100963041	100963041	+	Missense_Mutation	SNP	C	C	T	rs140592059	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	3	100963041	100963041	C	T	SNP	IMPG2	NM_016247.2	human	genbank	58_37c	-1	validated	missense	c.2134	p.V712I	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_2,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
KLHL4	0	genome.wustl.edu	37	X	86772968	86772968	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	X	86772968	86772968	T	A	SNP	KLHL4	NM_057162.2	human	genbank	58_37c	+1	reviewed	missense	c.72	p.H24Q	1.000	NULL	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LIPE	0	genome.wustl.edu	37	19	42911525	42911525	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	19	42911525	42911525	C	T	SNP	LIPE	NM_005357.2	human	genbank	58_37c	-1	reviewed	silent	c.1938	p.L646	0.574	superfamily_alpha/beta-Hydrolases	PatternScan_LIPASE_GDXG_HIS,PatternScan_LIPASE_GDXG_SER,HMMPfam_HSL_N,HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases	-	no_errors
LOC442421	0	genome.wustl.edu	37	9	66500592	66500592	+	RNA	SNP	C	C	T	rs28712882	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	9	66500592	66500592	C	T	SNP	LOC442421	NR_024496.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.325	-	-	-	no_errors
MAGEA12	0	genome.wustl.edu	37	X	151900087	151900087	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	X	151900087	151900087	G	C	SNP	MAGEA12	NM_005367.5	human	genbank	58_37c	-1	reviewed	silent	c.714	p.V238	0.000	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
NBPF10	0	genome.wustl.edu	37	1	145311931	145311931	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	1	145311931	145311931	C	T	SNP	NBPF10	NM_001039703.4	human	genbank	58_37c	+1	provisional	missense	c.1999	p.R667C	0.000	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_errors
NCF4	0	genome.wustl.edu	37	22	37266473	37266473	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	22	37266473	37266473	C	G	SNP	NCF4	NM_013416.3	human	genbank	58_37c	+1	validated	missense	c.359	p.P120R	0.994	HMMPfam_PX,HMMSmart_PX,superfamily_PX	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PX,HMMSmart_PX,superfamily_PX	-	no_errors
NCOA5	0	genome.wustl.edu	37	20	44693794	44693794	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	20	44693794	44693794	C	G	SNP	NCOA5	NM_020967.2	human	genbank	58_37c	-1	reviewed	missense	c.703	p.E235Q	1.000	superfamily_Anticodon-binding domain of Class II aaRS	superfamily_Anticodon-binding domain of Class II aaRS	-	no_errors
PDCD10	0	genome.wustl.edu	37	3	167437925	167437925	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	3	167437925	167437925	C	G	SNP	PDCD10	NM_007217.3	human	genbank	58_37c	-1	reviewed	missense	c.21	p.E7D	1.000	NULL	HMMPfam_DUF1241	-	no_errors
POTEE	0	genome.wustl.edu	37	2	132021946	132021946	+	Missense_Mutation	SNP	G	G	A	rs78598826	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	2	132021946	132021946	G	A	SNP	POTEE	NM_001083538.1	human	genbank	58_37c	+1	validated	missense	c.2918	p.G973D	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	-	no_errors
PRKAR1A	0	genome.wustl.edu	37	17	66526498	66526498	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	17	66526498	66526498	C	T	SNP	PRKAR1A	NM_002734.3	human	genbank	58_37c	+1	reviewed	nonsense	c.1054	p.R352*	1.000	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_RIIa,HMMSmart_SM00394,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cAMP-binding domain-like	-	no_errors
RUNX1	0	genome.wustl.edu	37	21	36171674	36171680	+	Frame_Shift_Del	DEL	GTGCACA	GTGCACA	-	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	GTGCACA	GTGCACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	21	36171674	36171680	GTGCACA	-	DEL	RUNX1	NM_001754.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.891_885	p.V296fs	1.000:1.000:1.000:0.064:0.979:0.979:0.023	NULL	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
SAMD12	0	genome.wustl.edu	37	8	119452167	119452167	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	8	119452167	119452167	G	A	SNP	SAMD12	NM_207506.2	human	genbank	58_37c	-1	validated	silent	c.226	p.L76	1.000	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2	-	no_errors
TM4SF19	0	genome.wustl.edu	37	3	196054386	196054386	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	3	196054386	196054386	C	A	SNP	TM4SF19	NM_138461.2	human	genbank	58_37c	-1	validated	missense	c.76	p.A26S	0.828	HMMPfam_L6_membrane	HMMPfam_L6_membrane	-	no_errors
TNFRSF11A	0	genome.wustl.edu	37	18	60036105	60036105	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	18	60036105	60036105	G	A	SNP	TNFRSF11A	NM_003839.2	human	genbank	58_37c	+1	reviewed	missense	c.955	p.A319T	0.000	NULL	HMMPfam_TNFR_c6,HMMSmart_TNFR,PatternScan_TNFR_NGFR_1,superfamily_SSF57586	-	no_errors
TNPO3	0	genome.wustl.edu	37	7	128658078	128658078	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	7	128658078	128658078	G	C	SNP	TNPO3	NM_012470.2	human	genbank	58_37c	-1	validated	missense	c.254	p.S85C	1.000	superfamily_ARM repeat	HMMPfam_Xpo1,superfamily_ARM repeat	-	no_errors
TTN	0	genome.wustl.edu	37	2	179438786	179438786	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	2	179438786	179438786	C	G	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.64363	p.E21455Q	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
UGP2	0	genome.wustl.edu	37	2	64117287	64117287	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	2	64117287	64117287	G	T	SNP	UGP2	NM_006759.3	human	genbank	58_37c	+1	reviewed	missense	c.1387	p.D463Y	1.000	HMMPfam_UDPGP,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_UDPGP,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
