Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADCY7	0	genome.wustl.edu	37	16	50346035	50346035	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	16	50346035	50346035	G	A	SNP	ADCY7	NM_001114.3	human	genbank	58_37c	+1	reviewed	missense	c.2537	p.R846H	1.000	HMMSmart_CYCc	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
ATP13A4	0	genome.wustl.edu	37	3	193174938	193174938	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	3	193174938	193174938	G	A	SNP	ATP13A4	ENST00000428352	human	ensembl	58_37c	-1	known	nonsense	c.685	p.Q229*	0.989	superfamily_Metal cation-transporting ATPase ATP-binding domain N	HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
BNC2	0	genome.wustl.edu	37	9	16552596	16552596	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	9	16552596	16552596	C	T	SNP	BNC2	NM_017637.5	human	genbank	58_37c	-1	validated	missense	c.601	p.E201K	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
CDSN	0	genome.wustl.edu	37	6	31084943	31084945	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	6	31084943	31084945	CTT	-	DEL	CDSN	NM_001264.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.449_447	p.S153in_frame_del	0.093:0.082:0.059	NULL	PatternScan_AA_TRANSFER_CLASS_2	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	3036	3036	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	MT	3036	3036	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
GGT3P	0	genome.wustl.edu	37	22	18762636	18762636	+	RNA	SNP	G	A	A	rs518944	unknown	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	22	18762636	18762636	G	A	SNP	GGT3P	NR_003267.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.088	-	-	-	pseudogene
GTF2IRD2P1	0	genome.wustl.edu	37	7	72664015	72664016	+	RNA	INS	-	-	G	novel	unknown	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	7	72664015	72664016	-	G	INS	GTF2IRD2P1	NR_002164.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.912:0.964	-	-	-	pseudogene
LOC100271836	0	genome.wustl.edu	37	16	21902916	21902916	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	16	21902916	21902916	G	A	SNP	LOC100271836	NR_027155.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.998	-	-	-	pseudogene
LOC285359	0	genome.wustl.edu	37	3	101432076	101432077	+	RNA	INS	-	-	T	novel	unknown	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	3	101432076	101432077	-	T	INS	LOC285359	NR_002941.2	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.007:0.001	-	-	-	pseudogene
OPN1MW2	0	genome.wustl.edu	37	X	153492789	153492789	+	Missense_Mutation	SNP	G	T	T	rs139163406	unknown	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	X	153492789	153492789	G	T	SNP	OPN1MW2	NM_001048181.2	human	genbank	58_37c	+1	reviewed	missense	c.538	p.A180S	0.989	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN,superfamily_SSF81321	-	no_errors
PRR12	0	genome.wustl.edu	37	19	50098208	50098208	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	19	50098208	50098208	G	A	SNP	PRR12	NM_020719.1	human	genbank	58_37c	+1	validated	missense	c.616	p.E206K	1.000	NULL	NULL	-	no_errors
PTEN	0	genome.wustl.edu	37	10	89720799	89720802	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel	unknown	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	TACT	TACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	10	89720799	89720802	TACT	-	DEL	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	frame_shift_del	c.950_953	p.T319fs	1.000:1.000:1.000:1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
SDHAP1	0	genome.wustl.edu	37	3	195711512	195711512	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	3	195711512	195711512	C	G	SNP	SDHAP1	NR_003264.2	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
VCX3B	0	genome.wustl.edu	37	X	8434278	8434278	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	X	8434278	8434278	C	G	SNP	VCX3B	NM_001001888.2	human	genbank	58_37c	+1	reviewed	missense	c.505	p.Q169E	0.000	NULL	NULL	-	no_errors
WASH7P	0	genome.wustl.edu	37	1	16977	16977	+	RNA	SNP	G	A	A	rs77161726	byFrequency	TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	1	16977	16977	G	A	SNP	WASH7P	NR_024540.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
