Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MORN1	79906	genome.wustl.edu	37	1	2319697	2319697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000378525	-1	known	p.A38V	0.128	39	0%	18	44.4%	38	28.9%	unknown(0)	-	-	NULL
CEP104	9731	genome.wustl.edu	37	1	3747747	3747747	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014704.3	-1	validated	p.I567F	0.657	132	0%	138	37%	15	40%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	superfamily_ARM repeat
DNAJC11	55735	genome.wustl.edu	37	1	6714011	6714011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018198.3	-1	validated	p.Q156R	1.000	166	0%	141	32.6%	27	25.9%	benign(0.003)	tolerated(0.8)	neutral(0.001)	NULL
CA6	765	genome.wustl.edu	37	1	9027846	9027846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001215.2	+1	reviewed	p.A234T	0.000	115	0%	113	17.7%	0	-	possibly_damaging(0.559)	tolerated(0.41)	neutral(0.206)	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
APITD1	378708	genome.wustl.edu	37	1	10511634	10511636	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_198544.2	+1	reviewed	p.F160in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Somatostatin
PTCHD2	57540	genome.wustl.edu	37	1	11561711	11561711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_020780.1	+1	validated	p.P221L	0.000	18	0%	15	33.3%	0	-	benign(0.013)	tolerated(0.17)	neutral(0.059)	NULL
SPEN	23013	genome.wustl.edu	37	1	16202819	16202819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015001.2	+1	reviewed	p.R176L	1.000	80	0%	116	36.2%	2	100%	possibly_damaging(0.951)	deleterious(0.02)	deleterious(0.777)	NULL
SPEN	23013	genome.wustl.edu	37	1	16247421	16247421	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015001.2	+1	reviewed	p.Y564	1.000	75	0%	76	25%	4	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
C1orf64	149563	genome.wustl.edu	37	1	16332512	16332512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_178840.2	+1	provisional	p.A61T	0.000	102	0%	91	40.7%	17	41.1%	benign(0.133)	tolerated(0.68)	neutral(0.013)	NULL
ACTL8	81569	genome.wustl.edu	37	1	18149620	18149620	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_030812.2	+1	validated	p.K39	0.763	84	0%	66	33.3%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
IGSF21	84966	genome.wustl.edu	37	1	18703923	18703923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032880.3	+1	validated	p.N444S	1.000	201	0%	204	35.3%	1	0%	benign(0.045)	tolerated(0.2)	neutral(0.052)	NULL
PLA2G2F	64600	genome.wustl.edu	37	1	20474824	20474824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_022819.3	+1	validated	p.S189N	1.000	89	0%	46	37%	0	-	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	superfamily_PhospholipaseA2
CELA3A	10136	genome.wustl.edu	37	1	22328177	22328177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005747.4	+1	reviewed	p.R4W	0.944	203	0%	174	28.2%	0	-	unknown(0)	deleterious(0.02)	-	NULL
RPA2	6118	genome.wustl.edu	37	1	28224195	28224196	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002946.3	-1	provisional	p.V119fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_tRNA_anti,superfamily_Nucleic acid-binding proteins
EPB41	2035	genome.wustl.edu	37	1	29385148	29385148	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_203342.2	+1	reviewed	p.D422	1.000	73	0%	89	15.7%	0	-	-	-	-	NULL
PTPRU	10076	genome.wustl.edu	37	1	29630525	29630525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005704.3	+1	reviewed	p.A889T	1.000	63	0%	78	42.3%	0	-	benign(0.116)	tolerated(0.11)	neutral(0.281)	superfamily_(Phosphotyrosine protein) phosphatases II
NCDN	23154	genome.wustl.edu	37	1	36029369	36029369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001014839.1	+1	reviewed	p.R538C	1.000	110	0%	92	41.3%	15	26.6%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Neurochondrin
SLFNL1	200172	genome.wustl.edu	37	1	41483006	41483006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_144990.3	-1	validated	p.P334L	1.000	29	0%	31	41.9%	10	30%	benign(0.367)	tolerated(0.06)	neutral(0.439)	HMMPfam_AAA_4
HIVEP3	59269	genome.wustl.edu	37	1	42048741	42048741	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024503.3	-1	validated	p.S576	1.000	105	0%	90	44.4%	2	0%	-	-	-	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42048765	42048765	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024503.3	-1	validated	p.T568	0.090	94	0%	85	14.1%	2	0%	-	-	-	NULL
NASP	4678	genome.wustl.edu	37	1	46073465	46073465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_172164.1	+1	reviewed	p.E296D	0.022	158	0%	179	42.5%	24	58.3%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	superfamily_SSF48452
DIO1	1733	genome.wustl.edu	37	1	54371825	54371825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001039715.1	+1	reviewed	p.R132H	1.000	39	0%	47	31.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_T4_deiodinase
INADL	10207	genome.wustl.edu	37	1	62582810	62582810	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_176877.2	+1	reviewed	p.Q1604*	0.997	81	0%	97	36.1%	15	46.6%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
C1orf173	127254	genome.wustl.edu	37	1	75036927	75036927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001002912.4	-1	validated	p.E1489D	0.115	850	0.1%	892	34.4%	5	20%	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	NULL
SYDE2	84144	genome.wustl.edu	37	1	85666013	85666013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032184.1	-1	validated	p.S223P	0.000	131	0%	98	35.7%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
GBP4	115361	genome.wustl.edu	37	1	89652203	89652203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_052941.4	-1	validated	p.R507Q	0.000	141	0%	211	43.6%	15	0%	benign(0.023)	tolerated(0.36)	neutral(0.021)	HMMPfam_GBP_C,superfamily_GBP
GBP6	163351	genome.wustl.edu	37	1	89848412	89848412	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_198460.2	+1	validated	p.Q448*	0.001	149	0%	133	21.8%	0	-	-	-	-	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
SLC30A7	148867	genome.wustl.edu	37	1	101427419	101427419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001144884.1	+1	validated	p.L293S	1.000	253	0%	231	30.3%	3	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Cation_efflux
COL11A1	1301	genome.wustl.edu	37	1	103379957	103379957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_080629.2	-1	reviewed	p.P1322H	1.000	135	0%	132	37.9%	0	-	unknown(0)	deleterious(0)	-	NULL
NTNG1	22854	genome.wustl.edu	37	1	107979421	107979421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001113226.1	+1	validated	p.P464S	1.000	50	0%	37	18.9%	1	0%	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_Laminin_EGF,superfamily_EGF/Laminin
SPAG17	200162	genome.wustl.edu	37	1	118658043	118658043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_206996.2	-1	validated	p.I113V	0.999	188	0%	150	32.7%	0	-	benign(0.34)	tolerated(0.45)	neutral(0.119)	NULL
ANKRD34A	284615	genome.wustl.edu	37	1	145474507	145474507	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001039888.2	+1	validated	p.P393	0.870	32	0%	23	47.8%	0	-	-	-	-	NULL
HRNR	388697	genome.wustl.edu	37	1	152188567	152188567	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001009931.1	-1	validated	p.G1846	0.000	605	0%	433	9.9%	0	-	-	-	-	NULL
DENND4B	9909	genome.wustl.edu	37	1	153914679	153914679	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014856.2	-1	validated	p.G265fs	0.998	-	-	-	-	-	-	-	-	-	HMMPfam_uDENN,HMMSmart_uDENN
GON4L	54856	genome.wustl.edu	37	1	155722019	155722019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001037533.1	-1	validated	p.G2068R	0.018	156	0%	164	8.5%	6	0%	probably_damaging(0.976)	deleterious(0.03)	deleterious(0.782)	NULL
BCAN	63827	genome.wustl.edu	37	1	156618374	156618374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_021948.3	+1	validated	p.G262C	0.732	187	0%	215	20.5%	0	-	probably_damaging(0.958)	tolerated(0.18)	neutral(0.458)	HMMPfam_Xlink,HMMSmart_SM00445,superfamily_C-type lectin-like
LRRC71	149499	genome.wustl.edu	37	1	156899170	156899170	+	Silent	SNP	G	G	A	rs190061539	by1000genomes	TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_144702.2	+1	validated	p.T365	0.021	73	0%	70	14.3%	5	0%	-	-	-	superfamily_RNI-like
KIRREL	55243	genome.wustl.edu	37	1	158064532	158064532	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018240.5	+1	validated	p.R632	1.000	73	0%	65	46.2%	1	0%	-	-	-	NULL
MGST3	4259	genome.wustl.edu	37	1	165619088	165619088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004528.2	+1	reviewed	p.A2T	1.000	90	0%	83	39.8%	111	25.2%	benign(0)	tolerated(0.19)	neutral(0.050)	PatternScan_TONB_DEPENDENT_REC_1
C1orf129	80133	genome.wustl.edu	37	1	170961469	170961469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_025063.2	+1	validated	p.A398V	1.000	241	0%	240	35%	0	-	benign(0.007)	deleterious(0.01)	neutral(0.406)	NULL
C1orf9	51430	genome.wustl.edu	37	1	172538248	172538250	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014283.3	+1	validated	p.K277in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CACNA1E	777	genome.wustl.edu	37	1	181759688	181759688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_000721.2	+1	reviewed	p.S1965Y	1.000	133	0%	127	29.1%	0	-	probably_damaging(0.982)	tolerated(0.51)	neutral(0.435)	NULL
CRB1	23418	genome.wustl.edu	37	1	197297715	197297715	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_201253.1	+1	reviewed	p.P78	0.925	162	0%	140	36.4%	0	-	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
MYBPH	4608	genome.wustl.edu	37	1	203140649	203140649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004997.2	-1	validated	p.R219W	0.074	16	0%	16	31.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
NFASC	23114	genome.wustl.edu	37	1	204985525	204985525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015090.3	+1	reviewed	p.Y1123C	1.000	218	0%	159	22.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAPKAPK2	9261	genome.wustl.edu	37	1	206905414	206905414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004759.3	+1	reviewed	p.A364V	0.878	138	0%	85	37.6%	3	0%	unknown(0)	-	-	NULL
MARK1	4139	genome.wustl.edu	37	1	220791762	220791762	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018650.3	+1	validated	p.P221	0.993	188	0%	176	36.4%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DISP1	84976	genome.wustl.edu	37	1	223165373	223165373	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032890.2	+1	reviewed	p.W270*	1.000	98	0%	87	35.6%	0	-	-	-	-	HMMPfam_Patched
C1orf65	164127	genome.wustl.edu	37	1	223567335	223567335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_152610.2	+1	validated	p.A173V	0.994	36	0%	33	33.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TMEM63A	9725	genome.wustl.edu	37	1	226053661	226053661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014698.2	-1	validated	p.R228W	1.000	37	0%	25	32%	28	25%	possibly_damaging(0.857)	deleterious(0)	deleterious(0.776)	superfamily_SSF54928
ITPKB	3707	genome.wustl.edu	37	1	226923814	226923814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002221.3	-1	reviewed	p.T449M	0.000	29	0%	19	42.1%	5	20%	possibly_damaging(0.791)	deleterious(0.02)	deleterious(0.679)	NULL
MTR	4548	genome.wustl.edu	37	1	236973856	236973856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_000254.2	+1	reviewed	p.V155M	1.000	197	0%	219	32.9%	3	100%	unknown(0)	deleterious(0.03)	-	HMMPfam_S-methyl_trans,superfamily_Homocysteine S-methyltransferase
TFB2M	64216	genome.wustl.edu	37	1	246729290	246729290	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_022366.2	-1	validated	p.L51	0.001	119	0%	105	35.2%	13	23%	-	-	-	NULL
OR2T35	403244	genome.wustl.edu	37	1	248801799	248801799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001001827.1	-1	provisional	p.A254E	0.033	106	0%	103	17.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
SNTG2	54221	genome.wustl.edu	37	2	1271142	1271142	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018968.3	+1	reviewed	p.W361*	1.000	33	0%	25	28%	0	-	-	-	-	NULL
YWHAQ	10971	genome.wustl.edu	37	2	9770350	9770350	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006826.2	-1	reviewed	p.L78	1.000	87	0%	39	33.3%	102	38.2%	-	-	-	HMMPfam_14-3-3,HMMSmart_SM00101,superfamily_14-3-3 protein
NBAS	51594	genome.wustl.edu	37	2	15330452	15330452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015909.2	-1	validated	p.E2170K	0.055	182	0%	163	33.7%	30	26.6%	benign(0.023)	tolerated(0.06)	neutral(0.324)	NULL
ZNF512	84450	genome.wustl.edu	37	2	27839157	27839157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032434.2	+1	validated	p.S421F	1.000	197	0%	175	17.1%	9	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_ZnF_C2H2
PIGF	5281	genome.wustl.edu	37	2	46842079	46842079	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002643.3	-1	reviewed	p.H75	1.000	103	0%	103	35%	29	37.9%	-	-	-	HMMPfam_PIG-F
SPTBN1	6711	genome.wustl.edu	37	2	54859795	54859795	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003128.2	+1	reviewed	p.D1219	0.710	126	0%	101	44.6%	31	19.3%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
TMEM17	200728	genome.wustl.edu	37	2	62733226	62733226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_198276.2	-1	validated	p.N13K	1.000	14	0%	10	50%	3	100%	benign(0.073)	tolerated(0.09)	neutral(0.301)	NULL
CEP68	23177	genome.wustl.edu	37	2	65299917	65299917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015147.2	+1	validated	p.V563I	0.000	132	0%	95	14.7%	9	0%	benign(0.018)	tolerated(0.74)	neutral(0.002)	NULL
DCTN1	1639	genome.wustl.edu	37	2	74595186	74595186	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004082.3	-1	reviewed	p.R643*	1.000	79	0%	75	44%	23	17.3%	-	-	-	NULL
LRRTM1	347730	genome.wustl.edu	37	2	80530553	80530553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_178839.4	-1	validated	p.T131I	1.000	77	0%	44	34.1%	8	37.5%	benign(0.133)	tolerated(0.13)	neutral(0.264)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
CAPG	822	genome.wustl.edu	37	2	85628310	85628310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001747.2	-1	reviewed	p.C165F	1.000	95	0%	76	40.8%	237	9.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins
TGFBRAP1	9392	genome.wustl.edu	37	2	105897132	105897132	+	Silent	SNP	C	C	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001142621.1	-1	validated	p.L390	1.000	44	0%	48	33.3%	3	33.3%	-	-	-	NULL
TGFBRAP1	9392	genome.wustl.edu	37	2	105924145	105924145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001142621.1	-1	validated	p.C205Y	1.000	249	0%	260	31.9%	3	33.3%	benign(0.141)	tolerated(0.16)	neutral(0.071)	NULL
EDAR	10913	genome.wustl.edu	37	2	109513592	109513592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_022336.3	-1	reviewed	p.T373M	1.000	84	0%	78	39.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Death,superfamily_DEATH_like
CHCHD5	84269	genome.wustl.edu	37	2	113343883	113343883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032309.2	+1	provisional	p.R84C	1.000	56	0%	46	32.6%	14	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CHCH
PAX8	7849	genome.wustl.edu	37	2	114004444	114004444	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003466.3	-1	reviewed	p.L26	0.996	32	0%	43	27.9%	46	47.8%	-	-	-	HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like
NEB	4703	genome.wustl.edu	37	2	152347012	152347012	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004543.4	-1	reviewed	p.R6535	1.000	30	0%	33	33.3%	20	50%	-	-	-	NULL
LRP2	4036	genome.wustl.edu	37	2	170030518	170030518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004525.2	-1	reviewed	p.C3642Y	1.000	83	0%	47	31.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
TTN	7273	genome.wustl.edu	37	2	179446522	179446522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000356127	-1	known	p.G19588D	1.000	51	0%	41	29.3%	0	-	probably_damaging(0.962)	-	-	HMMPfam_fn3,HMMSmart_SM00060
CCDC141	285025	genome.wustl.edu	37	2	179733853	179733853	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_173648.2	-1	provisional	p.V220	0.995	329	0%	343	21.9%	0	-	-	-	-	NULL
PPIL3	53938	genome.wustl.edu	37	2	201747146	201747146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_130906.2	-1	reviewed	p.L31I	1.000	220	0%	231	32.9%	10	20%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
C2orf62	375307	genome.wustl.edu	37	2	219222458	219222458	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_198559.1	+1	predicted	e3+1	0.973	55	0%	58	34.5%	1	100%	-	-	-	-
PTPRN	5798	genome.wustl.edu	37	2	220167549	220167549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002846.2	-1	reviewed	p.A130T	0.666	147	0%	90	38.9%	0	-	benign(0.002)	tolerated(0.7)	neutral(0.002)	NULL
DNER	92737	genome.wustl.edu	37	2	230253013	230253013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_139072.3	-1	validated	p.P608L	1.000	292	0%	289	36.3%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196
ALPP	250	genome.wustl.edu	37	2	233244913	233244913	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001632.3	+1	reviewed	p.G225	0.996	72	0%	47	25.5%	4	0%	-	-	-	HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core
GIGYF2	26058	genome.wustl.edu	37	2	233704679	233704679	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001103147.1	+1	reviewed	p.E984Q	1.000	163	0%	226	28.3%	14	50%	unknown(0)	tolerated(0.44)	-	NULL
LRRFIP1	9208	genome.wustl.edu	37	2	238664759	238664759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001137552.1	+1	validated	p.A226T	0.998	61	0%	57	28.1%	21	38%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_DUF2051
MTERFD2	130916	genome.wustl.edu	37	2	242039227	242039227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_182501.3	-1	validated	p.T35M	0.000	83	0%	63	23.8%	2	0%	benign(0.155)	tolerated(0.47)	neutral(0.025)	HMMPfam_mTERF
CMTM7	112616	genome.wustl.edu	37	3	32491044	32491044	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_138410.2	+1	reviewed	p.A144	1.000	101	0%	120	33.3%	42	2.3%	-	-	-	HMMPfam_MARVEL
SCN11A	11280	genome.wustl.edu	37	3	38888607	38888607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014139.2	-1	validated	p.A1652T	1.000	234	0%	185	34.1%	0	-	benign(0.025)	tolerated(0.43)	neutral(0.014)	NULL
NKTR	4820	genome.wustl.edu	37	3	42685428	42685428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005385.3	+1	reviewed	p.R1412W	1.000	69	0%	88	33%	26	38.4%	unknown(0)	deleterious(0)	-	NULL
XCR1	2829	genome.wustl.edu	37	3	46063018	46063018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001024644.1	-1	reviewed	p.P141L	0.005	42	0%	25	40%	0	-	benign(0.025)	deleterious(0.02)	neutral(0.384)	HMMPfam_7tm_1,superfamily_SSF81321
PFKFB4	5210	genome.wustl.edu	37	3	48563043	48563043	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004567.2	-1	provisional	p.A349	0.991	17	0%	19	31.6%	5	60%	-	-	-	HMMPfam_PGAM,superfamily_SSF53254
COL7A1	1294	genome.wustl.edu	37	3	48603082	48603082	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_000094.3	-1	reviewed	p.I2809	0.586	37	0%	41	39%	11	9%	-	-	-	NULL
C3orf71	646450	genome.wustl.edu	37	3	48956193	48956193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001123040.1	-1	predicted	p.E130D	0.000	13	0%	17	52.9%	7	42.8%	unknown(0)	-	-	NULL
HYAL3	8372	genome.wustl.edu	37	3	50332625	50332625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003549.2	-1	reviewed	p.G137W	0.983	35	0%	36	33.3%	0	-	benign(0.013)	tolerated(0.07)	neutral(0.320)	HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases
MAPKAPK3	7867	genome.wustl.edu	37	3	50685354	50685354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004635.3	+1	reviewed	p.M342I	1.000	69	0%	32	25%	32	31.2%	benign(0.036)	tolerated(0.05)	neutral(0.347)	superfamily_Protein kinase-like (PK-like)
DNAH1	25981	genome.wustl.edu	37	3	52391950	52391950	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015512.4	+1	validated	p.I1339	0.957	14	0%	13	53.8%	0	-	-	-	-	HMMPfam_DHC_N2
NISCH	11188	genome.wustl.edu	37	3	52524728	52524728	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_007184.3	+1	validated	p.W1207*	1.000	67	0%	52	40.4%	42	38%	-	-	-	NULL
APPL1	26060	genome.wustl.edu	37	3	57291325	57291325	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_012096.2	+1	reviewed	p.S433	0.435	272	0%	315	34.3%	5	20%	-	-	-	NULL
FLNB	2317	genome.wustl.edu	37	3	58067396	58067396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001457.3	+1	reviewed	p.E227G	1.000	177	0%	208	34.1%	7	57.1%	possibly_damaging(0.676)	deleterious(0)	deleterious(0.685)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
MAGI1	9223	genome.wustl.edu	37	3	65342229	65342229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001033057.1	-1	reviewed	p.R1405C	0.000	184	0%	153	36.6%	18	55.5%	unknown(0)	deleterious(0)	-	NULL
TOMM70A	9868	genome.wustl.edu	37	3	100100603	100100603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014820.3	-1	validated	p.R247H	1.000	185	0%	200	38%	15	26.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF48452
SLC35A5	55032	genome.wustl.edu	37	3	112300136	112300136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_017945.2	+1	provisional	p.R391Q	0.930	191	0%	155	40.6%	6	50%	benign(0.009)	deleterious(0)	neutral(0.445)	NULL
BOC	91653	genome.wustl.edu	37	3	112991266	112991266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_033254.2	+1	validated	p.A226V	0.993	160	0%	112	30.4%	2	50%	probably_damaging(0.99)	tolerated(0.24)	deleterious(0.479)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119121090	119121090	+	Silent	SNP	C	C	T	rs61747387	byCluster;byFrequency;by1000genomes	TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_020754.2	+1	reviewed	p.R497	0.007	118	0%	91	35.2%	2	50%	-	-	-	NULL
PARP14	54625	genome.wustl.edu	37	3	122418535	122418535	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_017554.2	+1	validated	p.P378	0.000	381	0%	432	27.8%	4	50%	-	-	-	NULL
UROC1	131669	genome.wustl.edu	37	3	126219588	126219588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_144639.2	-1	reviewed	p.Q365H	0.998	35	0%	45	42.2%	0	-	possibly_damaging(0.632)	deleterious(0)	deleterious(0.665)	HMMPfam_Urocanase,superfamily_Urocanase
ALG1L2	644974	genome.wustl.edu	37	3	129811966	129811966	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001136152.1	+1	validated	p.D92	0.012	73	0%	101	34.7%	0	-	-	-	-	NULL
NEK11	79858	genome.wustl.edu	37	3	130871346	130871346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024800.4	+1	reviewed	p.E254D	0.002	109	0%	115	33.9%	5	40%	benign(0)	tolerated(1)	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
UBA5	79876	genome.wustl.edu	37	3	132394464	132394464	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024818.3	+1	reviewed	p.L322	0.001	136	0%	121	28.1%	46	47.8%	-	-	-	superfamily_MoeB
USP13	8975	genome.wustl.edu	37	3	179418824	179418824	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003940.2	+1	validated	p.S128	1.000	76	0%	82	40.2%	0	-	-	-	-	NULL
USP13	8975	genome.wustl.edu	37	3	179424786	179424786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003940.2	+1	validated	p.T181M	1.000	113	0%	121	30.6%	0	-	benign(0.35)	deleterious(0.01)	deleterious(0.517)	NULL
VPS8	23355	genome.wustl.edu	37	3	184769667	184769667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001009921.2	+1	validated	p.A1381T	1.000	151	0%	162	36.4%	40	35%	probably_damaging(0.953)	tolerated(0.17)	neutral(0.456)	NULL
EIF4A2	1974	genome.wustl.edu	37	3	186503752	186503752	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000443963	+1	known	p.*98R	1.000	160	0%	183	36.1%	73	35.6%	-	-	-	NULL
LEPREL1	55214	genome.wustl.edu	37	3	189681859	189681859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018192.3	-1	validated	p.M641T	1.000	154	0%	121	28.9%	4	25%	possibly_damaging(0.512)	deleterious(0.04)	deleterious(0.521)	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702
XXYLT1	152002	genome.wustl.edu	37	3	194790724	194790724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_152531.4	-1	validated	p.R301H	1.000	26	0%	24	33.3%	11	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nucleotide-diphospho-sugar transferases
C1QTNF7	114905	genome.wustl.edu	37	4	15444375	15444375	+	Silent	SNP	C	C	T	rs144156971	by1000genomes	TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001135170.1	+1	validated	p.Y281	0.793	232	0%	217	35.9%	1	0%	-	-	-	HMMSmart_SM00110,superfamily_TNF-like
DCAF4L1	285429	genome.wustl.edu	37	4	41984375	41984375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001029955.3	+1	validated	p.A189V	1.000	155	0%	165	38.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
ATP8A1	10396	genome.wustl.edu	37	4	42416721	42416721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006095.2	-1	reviewed	p.A1107V	1.000	133	0%	127	34.6%	0	-	possibly_damaging(0.49)	tolerated(0.11)	neutral(0.434)	NULL
WDFY3	23001	genome.wustl.edu	37	4	85617256	85617256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014991.4	-1	reviewed	p.A2923V	1.000	261	0%	247	39.7%	7	71.4%	benign(0.196)	deleterious(0.02)	neutral(0.402)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_WD40 repeat-like
HERC3	8916	genome.wustl.edu	37	4	89599188	89599188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014606.1	+1	provisional	p.P700H	1.000	163	0%	192	33.3%	2	0%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	superfamily_Hect E3 ligase catalytic domain
PDLIM5	10611	genome.wustl.edu	37	4	95444968	95444968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006457.3	+1	reviewed	p.L64I	1.000	206	0%	196	34.7%	10	30%	probably_damaging(0.999)	tolerated(0.31)	deleterious(0.517)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
TRPC3	7222	genome.wustl.edu	37	4	122853925	122853925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001130698.1	-1	validated	p.T163I	0.997	66	0%	87	32.2%	0	-	benign(0.012)	tolerated(0.55)	neutral(0.007)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PCDH10	57575	genome.wustl.edu	37	4	134073288	134073288	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032961.1	+1	reviewed	p.Q665*	1.000	16	0%	24	29.2%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH10	57575	genome.wustl.edu	37	4	134111314	134111314	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032961.1	+1	reviewed	p.*1041W	1.000	80	0%	73	39.7%	0	-	-	-	-	NULL
ELF2	1998	genome.wustl.edu	37	4	139983078	139983078	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_201999.1	-1	validated	p.L237	0.909	210	0%	215	39.1%	8	25%	-	-	-	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785
MAML3	55534	genome.wustl.edu	37	4	140651585	140651587	+	In_Frame_Del	DEL	CTG	CTG	-	rs5862430	byCluster;by1000genomes	TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018717.4	-1	validated	p.Q768in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
GLRB	2743	genome.wustl.edu	37	4	158058036	158058036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_000824.4	+1	reviewed	p.S203I	1.000	92	0%	71	42.3%	4	25%	benign(0.184)	deleterious(0)	neutral(0.462)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
CDKN2AIP	55602	genome.wustl.edu	37	4	184367392	184367393	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_017632.2	+1	provisional	p.S187fs	0.001:0.725	-	-	-	-	-	-	-	-	-	NULL
FAT1	2195	genome.wustl.edu	37	4	187521280	187521280	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005245.3	-1	reviewed	p.Q3959*	1.000	159	0%	129	32.6%	10	10%	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CCDC127	133957	genome.wustl.edu	37	5	205564	205564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_145265.2	-1	provisional	p.D211N	0.999	75	1.3%	87	34.5%	38	44.7%	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
SDHA	6389	genome.wustl.edu	37	5	228300	228300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004168.2	+1	reviewed	p.S208P	1.000	69	0%	82	19.5%	106	32%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain
FASTKD3	79072	genome.wustl.edu	37	5	7867849	7867849	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024091.2	-1	validated	p.L116	0.001	126	0%	90	37.8%	1	0%	-	-	-	NULL
MYO10	4651	genome.wustl.edu	37	5	16703193	16703195	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_012334.2	-1	validated	p.R784in_frame_del	0.013:0.013:0.053	-	-	-	-	-	-	-	-	-	HMMPfam_IQ,HMMSmart_IQ,superfamily_SSF52540
GPBP1	65056	genome.wustl.edu	37	5	56545387	56545387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001127235.2	+1	validated	p.R339H	1.000	27	0%	42	31%	74	28.3%	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589583	67589586	+	Frame_Shift_Del	DEL	TACA	TACA	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	TACA	TACA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_181523.1	+1	reviewed	p.H450fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589590	67589593	+	Frame_Shift_Del	DEL	ATAT	ATAT	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	ATAT	ATAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_181523.1	+1	reviewed	p.Y452fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589598	67589604	+	Frame_Shift_Del	DEL	CTCAGTT	CTCAGTT	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	CTCAGTT	CTCAGTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_181523.1	+1	reviewed	p.T454fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589630	67589646	+	Frame_Shift_Del	DEL	AGATTATATGAAGAATA	AGATTATATGAAGAATA	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	AGATTATATGAAGAATA	AGATTATATGAAGAATA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_181523.1	+1	reviewed	p.R465fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.970:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SV2C	22987	genome.wustl.edu	37	5	75490827	75490827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014979.1	+1	provisional	p.L222M	1.000	412	0%	395	32.7%	0	-	possibly_damaging(0.864)	tolerated(0.14)	deleterious(0.584)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
LOC100131573	100131573	genome.wustl.edu	37	5	93929008	93929008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	XM_001716404.1	+1	model	p.I196T	1.000	150	0%	143	39.9%	0	-	-	-	-	NULL
ANKRD32	84250	genome.wustl.edu	37	5	94024250	94024250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032290.3	+1	validated	p.L721F	0.756	158	0.6%	138	37.7%	2	100%	benign(0.017)	tolerated(0.21)	neutral(0.044)	NULL
KCNN2	3781	genome.wustl.edu	37	5	113831809	113831809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_021614.2	+1	reviewed	p.R557Q	1.000	205	0%	164	40.2%	10	40%	unknown(0)	tolerated(0.37)	-	NULL
PDLIM4	8572	genome.wustl.edu	37	5	131606680	131606680	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003687.3	+1	reviewed	p.G134*	0.979	203	0%	176	34.1%	32	0%	-	-	-	NULL
PCDHA9	9752	genome.wustl.edu	37	5	140230358	140230358	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_031857.1	+1	reviewed	p.S760T	0.851	77	0%	89	37.1%	0	-	benign(0.429)	deleterious(0.01)	deleterious(0.545)	NULL
PCDHA12	56137	genome.wustl.edu	37	5	140256423	140256423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018903.2	+1	reviewed	p.A456T	0.393	93	0%	79	44.3%	0	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	superfamily_Cadherin-like
PCDHB5	26167	genome.wustl.edu	37	5	140516822	140516822	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015669.2	+1	reviewed	p.S602	0.999	103	0%	143	31.5%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140581426	140581426	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018931.2	+1	reviewed	p.A693	0.000	118	0%	107	43.9%	2	0%	-	-	-	NULL
PCDHGB4	8641	genome.wustl.edu	37	5	140769231	140769231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003736.2	+1	reviewed	p.A594T	1.000	25	0%	37	37.8%	0	-	possibly_damaging(0.705)	deleterious(0.02)	deleterious(0.637)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
SH3RF2	153769	genome.wustl.edu	37	5	145439659	145439659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_152550.3	+1	validated	p.A596T	0.028	147	0%	166	34.3%	6	16.6%	benign(0.101)	tolerated(0.3)	neutral(0.036)	NULL
SPINK5	11005	genome.wustl.edu	37	5	147491435	147491435	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001127698.1	+1	reviewed	p.T599	0.272	86	0%	86	30.2%	0	-	-	-	-	HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors
SLIT3	6586	genome.wustl.edu	37	5	168244422	168244423	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003062.2	-1	validated	p.L225fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00082,HMMSmart_SM00368,superfamily_L domain-like
NSD1	64324	genome.wustl.edu	37	5	176638605	176638605	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_022455.4	+1	reviewed	p.Q1069*	0.001	344	0%	328	30.8%	6	16.6%	-	-	-	NULL
NSD1	64324	genome.wustl.edu	37	5	176719076	176719076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_022455.4	+1	reviewed	p.A2127V	0.999	68	0%	85	24.7%	26	38.4%	benign(0.05)	deleterious(0.01)	neutral(0.409)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD
GRK6	2870	genome.wustl.edu	37	5	176859015	176859015	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002082.3	+1	reviewed	p.L56	1.000	36	0%	29	34.5%	7	14.2%	-	-	-	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
HIST1H2AB	8335	genome.wustl.edu	37	6	26033451	26033451	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003513.2	-1	reviewed	p.L116	1.000	117	0%	91	28.6%	1	100%	-	-	-	HMMSmart_SM00414,superfamily_Histone-fold
HIST1H1E	3008	genome.wustl.edu	37	6	26156754	26156754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005321.2	+1	reviewed	p.K46E	1.000	28	0%	23	26.1%	4	25%	benign(0.057)	tolerated(0.53)	neutral(0.011)	"HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"
OR10C1	442194	genome.wustl.edu	37	6	29385254	29385254	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000383554	+1	known	p.C66	0.000	192	0%	177	41.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
RPP21	79897	genome.wustl.edu	37	6	30313139	30313139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024839.1	+1	provisional	p.T41I	1.000	67	0%	60	28.3%	83	28.9%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Rpr2
GTF2H4	2968	genome.wustl.edu	37	6	30879002	30879002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001517.4	+1	validated	p.A210T	1.000	122	0%	95	32.6%	17	35.2%	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_Tfb2
PRRC2A	7916	genome.wustl.edu	37	6	31593624	31593624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_080686.2	+1	reviewed	p.R272Q	1.000	52	0%	61	32.8%	14	35.7%	unknown(0)	deleterious(0.03)	-	NULL
PRRC2A	7916	genome.wustl.edu	37	6	31597498	31597498	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_080686.2	+1	reviewed	p.R710	1.000	32	0%	43	46.5%	15	33.3%	-	-	-	NULL
PRRC2A	7916	genome.wustl.edu	37	6	31602684	31602684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_080686.2	+1	reviewed	p.P1697H	1.000	196	0%	194	44.8%	129	41.8%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ABHD16A	7920	genome.wustl.edu	37	6	31660863	31660863	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_021160.2	-1	reviewed	p.H189	0.977	63	0%	74	23%	28	42.8%	unknown(0)	-	-	NULL
SYNGAP1	8831	genome.wustl.edu	37	6	33391320	33391320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006772.2	+1	reviewed	p.N45S	1.000	144	0%	108	34.3%	0	-	benign(0)	tolerated(0.47)	neutral(0.011)	HMMSmart_SM00233
CCDC167	154467	genome.wustl.edu	37	6	37452902	37452902	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_138493.2	-1	validated	p.H37	0.000	44	0%	29	48.3%	108	47.2%	-	-	-	NULL
NFYA	4800	genome.wustl.edu	37	6	41062174	41062174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002505.4	+1	reviewed	p.R310W	0.936	185	0%	187	39%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CBFB_NFYA,HMMSmart_SM00521
CUL9	23113	genome.wustl.edu	37	6	43156386	43156386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015089.2	+1	validated	p.L705I	1.000	106	0%	140	38.6%	5	40%	benign(0.104)	deleterious(0)	neutral(0.453)	superfamily_ARM repeat
TNFRSF21	27242	genome.wustl.edu	37	6	47200723	47200725	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014452.3	-1	reviewed	p.K582in_frame_del	0.995:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PRDM1	639	genome.wustl.edu	37	6	106553183	106553183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001198.3	+1	reviewed	p.T383M	0.221	151	0%	122	36.9%	5	0%	possibly_damaging(0.838)	deleterious(0)	deleterious(0.764)	NULL
CEP57L1	285753	genome.wustl.edu	37	6	109483952	109483952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001083535.1	+1	validated	p.V388I	1.000	69	0%	93	35.5%	1	100%	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
LAMA2	3908	genome.wustl.edu	37	6	129637005	129637006	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_000426.3	+1	reviewed	p.T1279fs	0.996:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Laminin_B,superfamily_ConA_like_lec_gl,HMMSmart_LamB
SASH1	23328	genome.wustl.edu	37	6	148865810	148865810	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015278.3	+1	validated	p.T1068	0.001	39	0%	40	37.5%	0	-	-	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152708236	152708236	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_182961.2	-1	reviewed	p.Q2820*	1.000	200	0%	257	38.5%	0	-	-	-	-	superfamily_Spectrin repeat
RPS6KA2	6196	genome.wustl.edu	37	6	166862263	166862263	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001006932.1	-1	reviewed	p.S435	1.000	39	0%	35	20%	4	0%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
SDK1	221935	genome.wustl.edu	37	7	4259833	4259833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_152744.3	+1	validated	p.R1878C	1.000	42	0%	42	35.7%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ANKMY2	57037	genome.wustl.edu	37	7	16649354	16649354	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_020319.2	-1	validated	p.V261	0.004	127	0%	135	37.8%	1	100%	-	-	-	NULL
DFNA5	1687	genome.wustl.edu	37	7	24789344	24789344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001127453.1	-1	reviewed	p.G17D	0.997	267	0%	244	37.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gasdermin
OGDH	4967	genome.wustl.edu	37	7	44734156	44734156	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002541.3	+1	reviewed	p.V550D	1.000	50	0%	26	30.8%	29	31%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_E1_dh,superfamily_SSF52518
ABCA13	154664	genome.wustl.edu	37	7	48314266	48314266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_152701.3	+1	reviewed	p.R1668H	0.000	323	0%	242	31.8%	0	-	benign(0.007)	-	-	NULL
EGFR	1956	genome.wustl.edu	37	7	55241632	55241632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005228.3	+1	reviewed	p.P694S	1.000	143	0%	84	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STAG3L4	64940	genome.wustl.edu	37	7	66774052	66774052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_022906.2	+1	validated	p.D73G	1.000	127	0%	119	35.3%	12	58.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_STAG
AUTS2	26053	genome.wustl.edu	37	7	70252285	70252285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015570.2	+1	validated	p.P800L	1.000	76	0%	67	37.3%	1	100%	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
POM121	9883	genome.wustl.edu	37	7	72397386	72397386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_172020.1	+1	reviewed	p.A38T	0.014	261	0%	205	37.1%	10	20%	possibly_damaging(0.748)	tolerated(0.2)	neutral(0.324)	NULL
MDH2	4191	genome.wustl.edu	37	7	75684182	75684182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005918.2	+1	reviewed	p.G34E	1.000	158	0%	190	26.8%	90	27.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldh_1_N,superfamily_NAD(P)-bd
DTX2	113878	genome.wustl.edu	37	7	76112069	76112069	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001102594.1	+1	validated	p.S171	0.001	48	0%	60	25%	10	40%	-	-	-	HMMPfam_WWE,HMMSmart_SM00678
PCLO	27445	genome.wustl.edu	37	7	82453553	82453553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_033026.5	-1	validated	p.K4865N	1.000	56	0%	38	50%	0	-	unknown(0)	-	-	NULL
CCDC132	55610	genome.wustl.edu	37	7	92935292	92935294	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_017667.2	+1	validated	p.E536in_frame_del	0.898:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PVRIG	79037	genome.wustl.edu	37	7	99818824	99818824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024070.3	+1	validated	p.P311T	0.000	21	0%	17	58.8%	16	0%	benign(0.007)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100686858	100686858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001040105.1	+1	provisional	p.P4054L	0.001	154	0%	163	33.1%	0	-	benign(0.014)	-	-	NULL
PSMC2	5701	genome.wustl.edu	37	7	102996162	102996162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002803.2	+1	reviewed	p.G71D	1.000	100	0%	153	37.3%	50	40%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
SLC26A5	375611	genome.wustl.edu	37	7	103048396	103048396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_198999.2	-1	reviewed	p.V264I	1.000	270	0%	305	32.8%	0	-	benign(0.309)	tolerated(0.36)	neutral(0.117)	HMMPfam_Sulfate_transp
ING3	54556	genome.wustl.edu	37	7	120608061	120608072	+	In_Frame_Del	DEL	CTATAACATTGG	CTATAACATTGG	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	CTATAACATTGG	CTATAACATTGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_019071.2	+1	reviewed	p.YNIG211in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SND1	27044	genome.wustl.edu	37	7	127725768	127725768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014390.2	+1	validated	p.R747H	1.000	70	0%	49	46.9%	284	42.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_Staphylococal_nuclease_OB-fold
CCDC136	64753	genome.wustl.edu	37	7	128454911	128454911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_022742.3	+1	validated	p.K995E	0.002	42	0%	52	28.8%	1	0%	benign(0.026)	deleterious(0.02)	neutral(0.384)	NULL
MEST	4232	genome.wustl.edu	37	7	130144786	130144786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000437945	+1	known	p.R278H	1.000	158	0%	197	33%	53	41.5%	benign(0.012)	deleterious(0.01)	neutral(0.406)	NULL
SVOPL	136306	genome.wustl.edu	37	7	138305860	138305860	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001139456.1	-1	validated	p.R428	0.281	41	0%	39	41%	2	0%	-	-	-	superfamily_MFS general substrate transporter
OR2F2	135948	genome.wustl.edu	37	7	143632647	143632647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001004685.1	+1	provisional	p.G108C	0.654	325	0%	290	39.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF282	8427	genome.wustl.edu	37	7	148921517	148921517	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003575.2	+1	validated	p.G598	1.000	38	0%	17	35.3%	22	50%	-	-	-	superfamily_SSF57667
WDR60	55112	genome.wustl.edu	37	7	158718993	158718993	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018051.4	+1	validated	e18+2	0.951	36	0%	44	29.5%	0	-	-	-	-	-
NAT1	9	genome.wustl.edu	37	8	18079903	18079903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_000662.5	+1	reviewed	p.G116D	0.018	416	0%	416	37%	19	42.1%	benign(0.08)	tolerated(0.14)	neutral(0.255)	HMMPfam_Acetyltransf_2,superfamily_SSF54001
TNFRSF10B	8795	genome.wustl.edu	37	8	22880327	22880327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003842.4	-1	reviewed	p.G394R	0.366	91	1.1%	100	40%	12	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain
LOXL2	4017	genome.wustl.edu	37	8	23156440	23156440	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002318.2	-1	reviewed	p.F718	0.990	41	0%	29	51.7%	12	0%	-	-	-	HMMPfam_Lysyl_oxidase
DPYSL2	1808	genome.wustl.edu	37	8	26501552	26501552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001386.4	+1	validated	p.P352L	1.000	93	0%	65	35.4%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
STMN4	81551	genome.wustl.edu	37	8	27099926	27099926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_030795.2	-1	provisional	p.Y33H	1.000	26	0%	28	21.4%	0	-	possibly_damaging(0.808)	deleterious(0.05)	deleterious(0.649)	NULL
WHSC1L1	54904	genome.wustl.edu	37	8	38187283	38187283	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_023034.1	-1	reviewed	p.Q398	1.000	161	0%	193	34.2%	27	44.4%	-	-	-	superfamily_Tudor/PWWP/MBT
C8orf86	389649	genome.wustl.edu	37	8	38373997	38373997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_207412.1	-1	predicted	p.A117T	0.000	135	0.7%	105	41%	0	-	unknown(0)	-	-	NULL
CA1	759	genome.wustl.edu	37	8	86240889	86240889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001128829.2	-1	reviewed	p.S229I	1.000	331	0%	338	32.5%	0	-	possibly_damaging(0.509)	deleterious(0.01)	deleterious(0.576)	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
SLC26A7	115111	genome.wustl.edu	37	8	92355600	92355600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_134266.1	+1	reviewed	p.L349P	1.000	43	0%	51	41.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfate_transp
KCNS2	3788	genome.wustl.edu	37	8	99440838	99440838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_020697.2	+1	provisional	p.D211N	1.000	135	0%	88	30.7%	0	-	benign(0.208)	deleterious(0.05)	neutral(0.365)	superfamily_Voltage-gated potassium channels
OXR1	55074	genome.wustl.edu	37	8	107719115	107719115	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018002.2	+1	validated	p.N456Y	0.000	191	0%	201	38.8%	6	66.6%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110456916	110456916	+	Silent	SNP	C	C	T	rs144003851	by1000genomes	TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_177531.4	+1	validated	p.V1606	0.940	372	0%	370	41.6%	0	-	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
NOV	4856	genome.wustl.edu	37	8	120431465	120431465	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002514.3	+1	reviewed	p.S219	0.998	180	0%	192	34.9%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
TAF2	6873	genome.wustl.edu	37	8	120801942	120801942	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003184.3	-1	reviewed	p.Q486	1.000	209	0%	237	31.2%	3	0%	-	-	-	superfamily_SSF55486
ZC3H3	23144	genome.wustl.edu	37	8	144621272	144621272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015117.2	-1	validated	p.D89N	0.027	17	0%	14	35.7%	9	11.1%	probably_damaging(0.98)	tolerated(0.05)	deleterious(0.769)	NULL
KANK1	23189	genome.wustl.edu	37	9	731229	731229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015158.2	+1	reviewed	p.A990T	0.033	75	0%	97	26.8%	4	25%	benign(0)	tolerated(1)	-	superfamily_ANK
KDM4C	23081	genome.wustl.edu	37	9	7015919	7015919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015061.3	+1	reviewed	p.A750V	0.990	159	0%	143	32.9%	21	47.6%	benign(0.001)	tolerated(0.1)	neutral(0.286)	superfamily_FYVE/PHD zinc finger
MPDZ	8777	genome.wustl.edu	37	9	13188939	13188939	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003829.3	-1	validated	p.G736	0.641	290	0%	264	32.2%	1	0%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SLC24A2	25769	genome.wustl.edu	37	9	19516274	19516274	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_020344.1	-1	provisional	p.I621	0.493	187	0%	202	31.7%	0	-	-	-	-	HMMPfam_Na_Ca_ex
VCP	7415	genome.wustl.edu	37	9	35059707	35059707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_007126.3	-1	reviewed	p.A596V	1.000	127	0%	127	31.5%	281	61.9%	possibly_damaging(0.477)	tolerated(0.76)	neutral(0.159)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
FANCG	2189	genome.wustl.edu	37	9	35077285	35077285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004629.1	-1	reviewed	p.L208M	0.980	160	0%	139	38.8%	16	25%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	NULL
RECK	8434	genome.wustl.edu	37	9	36060149	36060149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_021111.2	+1	reviewed	p.P90S	1.000	232	0%	266	32%	1	0%	benign(0.003)	tolerated(0.54)	neutral(0.007)	NULL
DCAF10	79269	genome.wustl.edu	37	9	37842190	37842190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024345.3	+1	validated	p.T253N	1.000	104	0%	166	31.3%	3	33.3%	possibly_damaging(0.837)	tolerated(0.13)	deleterious(0.572)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SMC5	23137	genome.wustl.edu	37	9	72895705	72895705	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015110.3	+1	validated	p.Q237*	1.000	220	0%	246	33.7%	2	50%	-	-	-	HMMPfam_SMC_N,superfamily_SSF52540
S1PR3	1903	genome.wustl.edu	37	9	91616968	91616968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005226.2	+1	reviewed	p.V285M	0.927	53	0%	45	40%	6	0%	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_7tm_1,superfamily_SSF81321
PTCH1	5727	genome.wustl.edu	37	9	98209397	98209397	+	Missense_Mutation	SNP	C	C	T	rs187104739	by1000genomes	TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_000264.3	-1	reviewed	p.V1381M	1.000	43	0%	40	25%	6	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
HSD17B3	3293	genome.wustl.edu	37	9	99060732	99060732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_000197.1	-1	reviewed	p.A56V	1.000	506	0.2%	623	33.1%	2	50%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
SLC35D2	11046	genome.wustl.edu	37	9	99113395	99113395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_007001.2	-1	validated	p.I160V	0.924	131	0%	149	31.5%	10	60%	benign(0.001)	tolerated(0.88)	-	NULL
ANP32B	10541	genome.wustl.edu	37	9	100767334	100767334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006401.2	+1	validated	p.L139P	1.000	73	0%	88	34.1%	276	38%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00446,superfamily_Outer arm dynein light chain 1
ZNF462	58499	genome.wustl.edu	37	9	109689703	109689703	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_021224.4	+1	validated	p.P1170	0.159	391	0%	414	44.4%	1	100%	-	-	-	superfamily_beta-sandwich domain of Sec23/24
C9orf84	158401	genome.wustl.edu	37	9	114449067	114449067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_173521.3	-1	validated	p.R1440W	0.997	219	0.5%	231	34.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC31A2	1318	genome.wustl.edu	37	9	115918382	115918382	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000394724	+1	known	p.M35K	0.000	229	0%	209	43.1%	0	-	-	-	-	NULL
FKBP15	23307	genome.wustl.edu	37	9	115962165	115962165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015258.1	-1	validated	p.A193T	1.000	54	0%	55	18.2%	4	25%	probably_damaging(0.99)	tolerated(0.14)	deleterious(0.691)	HMMPfam_FKBP_C,superfamily_FKBP-like
LRSAM1	90678	genome.wustl.edu	37	9	130258310	130258310	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001005373.1	+1	validated	p.I589N	0.992	16	0%	10	40%	27	22.2%	benign(0.213)	deleterious(0.02)	neutral(0.404)	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
STXBP1	6812	genome.wustl.edu	37	9	130430453	130430453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003165.3	+1	reviewed	p.A297T	1.000	41	0%	37	29.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
COQ4	51117	genome.wustl.edu	37	9	131095906	131095906	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_016035.3	+1	validated	p.H260	0.000	38	0%	38	36.8%	161	42.2%	-	-	-	NULL
ABL1	25	genome.wustl.edu	37	9	133738156	133738156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_007313.2	+1	reviewed	p.V205I	1.000	66	0%	42	57.1%	14	35.7%	possibly_damaging(0.603)	tolerated(0.49)	neutral(0.220)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
TUBB4B	10383	genome.wustl.edu	37	9	140137223	140137223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006088.5	+1	validated	p.A185T	1.000	21	0%	17	29.4%	1467	33.1%	benign(0)	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
ADARB2	105	genome.wustl.edu	37	10	1230839	1230839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018702.2	-1	reviewed	p.H669Y	1.000	26	0%	22	40.9%	1	0%	possibly_damaging(0.881)	tolerated(0.36)	neutral(0.364)	HMMPfam_A_deamin,HMMSmart_ADEAMc
CELF2	10659	genome.wustl.edu	37	10	11299738	11299738	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006561.3	+1	reviewed	p.S147	1.000	71	0%	85	30.6%	2	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ITGA8	8516	genome.wustl.edu	37	10	15614302	15614302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003638.1	-1	provisional	p.R849W	0.926	224	0%	237	33.8%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
VIM	7431	genome.wustl.edu	37	10	17272668	17272669	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003380.3	+1	reviewed	p.E198fs	0.995:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Filament
ANKRD26	22852	genome.wustl.edu	37	10	27326801	27326801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014915.2	-1	validated	p.Q853R	1.000	118	0%	126	31.7%	1	100%	benign(0.205)	tolerated(0.12)	neutral(0.281)	NULL
MAP3K8	1326	genome.wustl.edu	37	10	30749707	30749707	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005204.2	+1	reviewed	p.G449A	0.998	129	0%	108	35.2%	3	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
NRP1	8829	genome.wustl.edu	37	10	33496541	33496541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003873.5	-1	validated	p.G573E	1.000	283	0%	258	34.5%	17	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_2,superfamily_Galactose-binding domain-like
NRP1	8829	genome.wustl.edu	37	10	33542964	33542964	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003873.5	-1	validated	p.W325R	1.000	120	0%	115	35.7%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,superfamily_Galactose-binding domain-like
ENSG00000248534	0	genome.wustl.edu	37	10	50534969	50534970	+	RNA	INS	-	-	ACACAC	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000399384	-1	novel	NULL	0.000:0.000	-	-	-	-	-	-	-	-	-	-
PHYHIPL	84457	genome.wustl.edu	37	10	60996341	60996341	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032439.3	+1	validated	p.V134	0.988	186	0%	183	39.9%	1	0%	-	-	-	HMMPfam_fn3,superfamily_Fibronectin type III
SAMD8	142891	genome.wustl.edu	37	10	76928311	76928311	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_144660.2	+1	validated	p.L229	1.000	291	0%	315	32.4%	1	100%	-	-	-	NULL
DLG5	9231	genome.wustl.edu	37	10	79593716	79593716	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004747.3	-1	reviewed	p.T568	1.000	36	0%	31	38.7%	12	33.3%	-	-	-	NULL
SFTPD	6441	genome.wustl.edu	37	10	81702174	81702174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003019.4	-1	validated	p.P135S	1.000	75	0%	73	17.8%	0	-	possibly_damaging(0.707)	-	-	HMMPfam_Collagen
LOC100131699	100131699	genome.wustl.edu	37	10	86320504	86320504	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	XM_001723921.2	-1	model	p.K89E	1.000	94	0%	102	26.5%	2	50%	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692949	89692949	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000371953	+1	known	p.F145I	1.000	319	0%	356	34.6%	11	9%	benign(0.429)	tolerated(0.13)	neutral(0.392)	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PLCE1	51196	genome.wustl.edu	37	10	96084105	96084105	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_016341.3	+1	reviewed	e30-1	1.000	300	0%	263	38%	0	-	-	-	-	-
CRTAC1	55118	genome.wustl.edu	37	10	99683047	99683047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018058.4	-1	validated	p.R178C	1.000	40	0%	27	44.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Integrin alpha N-terminal domain
PPRC1	23082	genome.wustl.edu	37	10	103908413	103908413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015062.3	+1	reviewed	p.Y1527H	1.000	188	0.5%	178	35.4%	32	40.6%	unknown(0)	tolerated(0.12)	-	superfamily_RNA-binding domain RBD
PRDX3	10935	genome.wustl.edu	37	10	120928766	120928766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006793.2	-1	reviewed	p.R214C	1.000	54	0%	32	31.2%	193	46.6%	possibly_damaging(0.88)	deleterious(0)	deleterious(0.788)	superfamily_Thiordxn-like_fd,HMMPfam_1-cysPrx_C
BAG3	9531	genome.wustl.edu	37	10	121436690	121436690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004281.3	+1	reviewed	p.A542T	0.006	101	0%	129	37.2%	49	24.4%	benign(0.25)	tolerated(0.16)	neutral(0.085)	NULL
CARS	833	genome.wustl.edu	37	11	3039980	3039980	+	Splice_Site	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001014437.1	-1	reviewed	e13-1	1.000	62	0%	45	31.1%	0	-	-	-	-	-
OR52M1	119772	genome.wustl.edu	37	11	4566853	4566853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001004137.1	+1	validated	p.R145G	0.001	209	0%	215	37.7%	0	-	possibly_damaging(0.717)	tolerated(0.25)	neutral(0.296)	HMMPfam_7tm_1,superfamily_SSF81321
OR52N2	390077	genome.wustl.edu	37	11	5841690	5841690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001005174.1	+1	provisional	p.V42A	0.751	255	0%	224	35.7%	0	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	superfamily_SSF81321
CNGA4	1262	genome.wustl.edu	37	11	6261671	6261671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001037329.2	+1	validated	p.R216H	1.000	216	0%	155	32.9%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
DENND5A	23258	genome.wustl.edu	37	11	9165753	9165753	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015213.2	-1	validated	p.L1065	1.000	68	0%	86	38.4%	39	30.7%	-	-	-	NULL
IGSF22	283284	genome.wustl.edu	37	11	18736130	18736130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_173588.3	-1	validated	p.A525T	0.207	73	0%	86	37.2%	0	-	probably_damaging(0.98)	tolerated(0.2)	deleterious(0.473)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
PAX6	5080	genome.wustl.edu	37	11	31816201	31816201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001604.4	-1	reviewed	p.E234G	1.000	79	0%	83	24.1%	0	-	benign(0.245)	deleterious(0)	deleterious(0.470)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
PRR5L	79899	genome.wustl.edu	37	11	36483913	36483913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024841.4	+1	validated	p.R245Q	0.989	106	0%	104	39.4%	16	37.5%	possibly_damaging(0.452)	tolerated(0.36)	neutral(0.168)	NULL
ALX4	60529	genome.wustl.edu	37	11	44296903	44296903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_021926.3	-1	reviewed	p.V258M	1.000	126	0%	97	32%	0	-	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
NUP160	23279	genome.wustl.edu	37	11	47814373	47814373	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015231.1	-1	validated	p.Y1139H	1.000	266	0%	294	39.8%	14	85.7%	probably_damaging(0.984)	tolerated(0.07)	deleterious(0.750)	NULL
OR5D18	219438	genome.wustl.edu	37	11	55587765	55587765	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001001952.1	+1	provisional	p.A220	0.000	285	0%	293	31.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LOC100287520	100287520	genome.wustl.edu	37	11	58862149	58862149	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	XM_002343089.1	+1	model	p.L304	0.001	56	0%	58	41.4%	0	-	-	-	-	HMMPfam_Gly_acyl_tr_C,superfamily_Acyl-CoA N-acyltransferases (Nat)
BEST1	7439	genome.wustl.edu	37	11	61725716	61725716	+	Silent	SNP	C	C	T	rs62639266		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001139443.1	+1	reviewed	p.L211	0.591	88	0%	76	44.7%	0	-	-	-	-	HMMPfam_Bestrophin
OTUB1	55611	genome.wustl.edu	37	11	63764886	63764886	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_017670.2	+1	reviewed	p.S228	0.128	104	0%	94	40.4%	241	34.4%	-	-	-	HMMPfam_Peptidase_C65,superfamily_Cysteine proteinases
TIGD3	220359	genome.wustl.edu	37	11	65123537	65123537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_145719.2	+1	reviewed	p.W86C	1.000	39	0%	28	28.6%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_CENPB,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind
PCNXL3	399909	genome.wustl.edu	37	11	65385983	65385983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032223.2	+1	validated	p.K384E	1.000	7	0.000	9	0.778	3	0%	possibly_damaging(0.797)	deleterious(0.03)	deleterious(0.664)	NULL
SHANK2	22941	genome.wustl.edu	37	11	70338480	70338480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_012309.3	-1	reviewed	p.R205L	1.000	14	0%	12	41.7%	2	0%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
NUMA1	4926	genome.wustl.edu	37	11	71724510	71724510	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006185.2	-1	validated	p.Q1347*	1.000	28	0%	32	34.4%	99	23.2%	-	-	-	NULL
CLPB	81570	genome.wustl.edu	37	11	72028228	72028228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_030813.3	-1	provisional	p.R334W	1.000	110	0.9%	115	29.6%	12	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM168A	23201	genome.wustl.edu	37	11	73130926	73130926	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015159.1	-1	predicted	p.A90	0.997	107	0%	100	29%	6	33.3%	-	-	-	NULL
SESN3	143686	genome.wustl.edu	37	11	94924698	94924698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_144665.2	-1	provisional	p.R71H	1.000	220	0%	215	34.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PA26
ARHGEF12	23365	genome.wustl.edu	37	11	120322283	120322283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015313.1	+1	reviewed	p.V636M	0.986	67	0%	95	30.5%	7	28.5%	benign(0.001)	tolerated(0.32)	neutral(0.024)	NULL
RPUSD4	84881	genome.wustl.edu	37	11	126081474	126081474	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032795.2	-1	validated	p.C20	0.000	100	0%	119	38.7%	0	-	-	-	-	NULL
AKAP3	10566	genome.wustl.edu	37	12	4737708	4737708	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006422.2	-1	reviewed	p.S120	0.009	281	0%	226	30.1%	0	-	-	-	-	HMMSmart_SM00807
C1R	715	genome.wustl.edu	37	12	7244248	7244248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000290575	-1	known	p.L25M	0.213	19	0%	19	26.3%	84	0%	possibly_damaging(0.903)	tolerated(0.19)	neutral(0.407)	NULL
RBP5	83758	genome.wustl.edu	37	12	7280873	7280873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_031491.2	-1	provisional	p.E72G	1.000	146	0%	128	30.5%	18	0%	probably_damaging(0.954)	deleterious(0.02)	deleterious(0.780)	HMMPfam_Lipocalin,superfamily_Calycin
FAR2	55711	genome.wustl.edu	37	12	29485551	29485551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018099.3	+1	provisional	p.R426C	1.000	150	0%	114	32.5%	5	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sterile
FAM113B	91523	genome.wustl.edu	37	12	47629771	47629771	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000330951	+1	known	e1+1	0.000	129	0%	126	39.7%	32	46.8%	-	-	-	-
C12orf68	387856	genome.wustl.edu	37	12	48578373	48578373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001013635.3	+1	validated	p.H156Q	1.000	7	0.000	15	0.400	2	0%	benign(0.016)	-	-	NULL
RND1	27289	genome.wustl.edu	37	12	49255850	49255850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014470.3	-1	validated	p.A87V	1.000	66	0%	59	37.3%	1	0%	probably_damaging(0.995)	tolerated(1)	neutral(0.458)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
TUBA1B	10376	genome.wustl.edu	37	12	49522264	49522264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006082.2	-1	validated	p.A278V	1.000	108	0.9%	105	29.5%	965	38.7%	benign(0.249)	deleterious(0.02)	neutral(0.409)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
ESPL1	9700	genome.wustl.edu	37	12	53663743	53663743	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_012291.4	+1	validated	p.S339	0.915	37	0%	53	22.6%	5	20%	-	-	-	NULL
ESPL1	9700	genome.wustl.edu	37	12	53677873	53677873	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_012291.4	+1	validated	p.L1037	1.000	188	0%	142	23.9%	6	50%	-	-	-	NULL
LRP1	4035	genome.wustl.edu	37	12	57579374	57579374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002332.2	+1	reviewed	p.R2175H	0.003	21	0%	26	30.8%	1	100%	possibly_damaging(0.778)	tolerated(0.13)	deleterious(0.543)	HMMSmart_SM00181,superfamily_EGF/Laminin
UHRF1BP1L	23074	genome.wustl.edu	37	12	100453250	100453250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015054.1	-1	validated	p.I602T	1.000	167	0%	197	25.9%	8	12.5%	benign(0.41)	deleterious(0.02)	deleterious(0.516)	NULL
KCTD10	83892	genome.wustl.edu	37	12	109907437	109907437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_031954.3	-1	provisional	p.V34M	1.000	75	0%	65	33.8%	1	100%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
ATXN2	6311	genome.wustl.edu	37	12	111954025	111954025	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002973.3	-1	reviewed	p.P596	1.000	43	0%	53	35.8%	2	100%	-	-	-	NULL
NAA25	80018	genome.wustl.edu	37	12	112512493	112512495	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024953.3	-1	reviewed	p.P284in_frame_del	0.995:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_NatB_MDM20,superfamily_TPR-like
NOS1	4842	genome.wustl.edu	37	12	117680487	117680487	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_000620.2	-1	reviewed	p.R996*	1.000	170	0%	211	31.3%	0	-	-	-	-	HMMPfam_FAD_binding_1,superfamily_Riboflavin synthase domain-like
ORAI1	84876	genome.wustl.edu	37	12	122064774	122064779	+	In_Frame_Del	DEL	CCGCCA	CCGCCA	-	rs141919534	byCluster;by1000genomes	TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	CCGCCA	CCGCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032790.3	+1	reviewed	p.PP46in_frame_del	0.716:0.710:0.709:0.897:0.997:0.999	-	-	-	-	-	-	-	-	-	NULL
DNAH10	196385	genome.wustl.edu	37	12	124274538	124274538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_207437.3	+1	validated	p.R501H	0.994	299	0%	271	35.8%	0	-	possibly_damaging(0.938)	tolerated(0.13)	deleterious(0.636)	HMMPfam_DHC_N1
PUS1	80324	genome.wustl.edu	37	12	132414616	132414616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_025215.5	+1	reviewed	p.K80R	0.406	5	0.000	10	0.400	24	41.6%	benign(0.051)	tolerated(0.26)	neutral(0.037)	NULL
LATS2	26524	genome.wustl.edu	37	13	21549368	21549368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014572.2	-1	reviewed	p.H970N	1.000	57	0%	55	32.7%	5	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
KCTD4	386618	genome.wustl.edu	37	13	45768145	45768147	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_198404.2	-1	validated	p.E186in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46543258	46543258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015070.3	-1	validated	p.A1141T	0.012	221	0%	228	35.1%	19	42.1%	unknown(0)	tolerated(0.07)	-	NULL
ITM2B	9445	genome.wustl.edu	37	13	48832986	48833003	+	In_Frame_Del	DEL	TGATCGCATTGAAAACAT	TGATCGCATTGAAAACAT	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	TGATCGCATTGAAAACAT	TGATCGCATTGAAAACAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_021999.4	+1	reviewed	p.RIENID208in_frame_del	0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:0.997:0.975:0.007:0.014:0.185	-	-	-	-	-	-	-	-	-	HMMPfam_BRICHOS
PCDH20	64881	genome.wustl.edu	37	13	61986559	61986559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_022843.3	-1	validated	p.Y558C	0.998	405	0%	360	24.7%	1	0%	possibly_damaging(0.853)	tolerated(0.09)	deleterious(0.625)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DOCK9	23348	genome.wustl.edu	37	13	99449400	99449400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000357329	-1	known	p.A2057V	0.998	54	0%	54	38.9%	9	0%	benign(0.001)	tolerated(1)	-	HMMPfam_Ded_cyto
DOCK9	23348	genome.wustl.edu	37	13	99630081	99630081	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001130050.1	-1	validated	p.A28G	0.995	33	0%	27	14.8%	1	0%	possibly_damaging(0.466)	tolerated(0.48)	neutral(0.164)	NULL
CARS2	79587	genome.wustl.edu	37	13	111340095	111340095	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024537.2	-1	validated	p.R182G	0.283	664	0%	695	34.7%	34	38.2%	benign(0.12)	deleterious(0.02)	neutral(0.393)	HMMPfam_tRNA-synt_1e,superfamily_SSF52374
ING1	3621	genome.wustl.edu	37	13	111372117	111372117	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005537.3	+1	reviewed	p.C369	0.225	82	0%	55	34.5%	31	45.1%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
OR4K2	390431	genome.wustl.edu	37	14	20344613	20344613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001005501.1	+1	provisional	p.L63I	0.978	690	0%	732	19.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM179B	23116	genome.wustl.edu	37	14	45431784	45431784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015091.2	+1	validated	p.A54T	0.997	62	0%	72	38.9%	0	-	possibly_damaging(0.78)	deleterious(0)	deleterious(0.736)	NULL
ENSG00000248934	0	genome.wustl.edu	37	14	50089381	50089381	+	RNA	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000504161	-1	novel	NULL	0.005	43	2.3%	37	40.5%	32	53.1%	-	-	-	-
NID2	22795	genome.wustl.edu	37	14	52507510	52507510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_007361.3	-1	validated	p.I629V	0.925	149	0%	140	40.7%	7	0%	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like
FERMT2	10979	genome.wustl.edu	37	14	53348037	53348037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001134999.1	-1	validated	p.P226L	1.000	308	0%	346	36.4%	2	0%	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMSmart_B41
EXOC5	10640	genome.wustl.edu	37	14	57675341	57675341	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006544.3	-1	reviewed	p.R705*	1.000	347	0.3%	321	30.2%	8	37.5%	-	-	-	HMMPfam_Sec10
NAA30	122830	genome.wustl.edu	37	14	57863563	57863563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001011713.2	+1	validated	p.V289M	1.000	128	0%	161	34.2%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
PIGH	5283	genome.wustl.edu	37	14	68059352	68059352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004569.3	-1	reviewed	p.Q158H	1.000	21	0%	31	41.9%	15	6.6%	probably_damaging(0.992)	tolerated(0.06)	deleterious(0.770)	HMMPfam_PIG-H
ESRRB	2103	genome.wustl.edu	37	14	76949101	76949101	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004452.3	+1	reviewed	p.P262	1.000	87	2.3%	72	26.4%	0	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
ANGEL1	23357	genome.wustl.edu	37	14	77257706	77257706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015305.3	-1	validated	p.R541Q	1.000	97	0%	123	22%	3	33.3%	possibly_damaging(0.95)	tolerated(0.48)	neutral(0.404)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
ISM2	145501	genome.wustl.edu	37	14	77942010	77942010	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_199296.2	-1	reviewed	p.N548	0.869	112	0.9%	65	32.3%	0	-	-	-	-	HMMPfam_AMOP,HMMSmart_SM00723
MOAP1	64112	genome.wustl.edu	37	14	93649974	93649974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_022151.4	-1	reviewed	p.R205Q	0.000	169	0%	113	23.9%	18	33.3%	probably_damaging(0.997)	tolerated(0.29)	deleterious(0.495)	NULL
AK7	122481	genome.wustl.edu	37	14	96924484	96924484	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_152327.2	+1	validated	p.E431A	0.994	86	0%	68	32.4%	2	100%	benign(0.148)	tolerated(0.12)	neutral(0.274)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF839	55778	genome.wustl.edu	37	14	102793109	102793109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018335.3	+1	validated	p.C359Y	0.001	35	0%	28	42.9%	10	50%	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
KLC1	3831	genome.wustl.edu	37	14	104123900	104123900	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001130107.1	+1	reviewed	p.N94fs	0.195	-	-	-	-	-	-	-	-	-	HMMPfam_Rab5-bind,superfamily_TPR-like
BRF1	2972	genome.wustl.edu	37	14	105684092	105684092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001519.2	-1	reviewed	p.A521T	0.996	12	0%	11	36.4%	60	53.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_BRF1
FMN1	342184	genome.wustl.edu	37	15	33359120	33359120	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001103184.2	-1	validated	p.G322	0.459	126	0%	132	21.2%	0	-	-	-	-	NULL
VPS18	57617	genome.wustl.edu	37	15	41192187	41192187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_020857.2	+1	reviewed	p.V391M	0.993	76	0%	54	33.3%	4	100%	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	HMMPfam_Pep3_Vps18
VPS18	57617	genome.wustl.edu	37	15	41192978	41192978	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_020857.2	+1	reviewed	p.N654	0.203	70	0%	58	24.1%	11	9%	-	-	-	superfamily_ARM repeat
PLA2G4F	255189	genome.wustl.edu	37	15	42446526	42446526	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_213600.3	-1	validated	p.A105	0.996	99	0%	84	31%	2	0%	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CGNL1	84952	genome.wustl.edu	37	15	57744427	57744427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032866.3	+1	validated	p.N665S	0.298	190	0%	239	31.4%	2	50%	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
SLC24A1	9187	genome.wustl.edu	37	15	65943203	65943203	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004727.2	+1	validated	p.Q906*	0.985	159	0%	145	35.2%	6	0%	-	-	-	NULL
SEMA7A	8482	genome.wustl.edu	37	15	74703165	74703165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003612.3	-1	reviewed	p.E601K	1.000	50	0%	46	28.3%	12	8.3%	possibly_damaging(0.521)	tolerated(0.83)	neutral(0.176)	HMMSmart_IG,superfamily_SSF48726
PTPN9	5780	genome.wustl.edu	37	15	75763041	75763041	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002833.2	-1	reviewed	p.L447V	0.996	299	0%	329	36.2%	14	50%	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
AKAP13	11214	genome.wustl.edu	37	15	86273806	86273806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006738.4	+1	reviewed	p.R2388W	1.000	735	0%	835	36.2%	7	28.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LRRK1	79705	genome.wustl.edu	37	15	101566277	101566277	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024652.3	+1	validated	p.A780	0.291	73	0%	60	36.7%	6	16.6%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
RHBDF1	64285	genome.wustl.edu	37	16	111830	111830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_022450.3	-1	validated	p.V392I	0.999	12	0.000	5	0.800	19	47.3%	possibly_damaging(0.636)	tolerated(0.3)	neutral(0.251)	NULL
LOC100132779	100132779	genome.wustl.edu	37	16	2816500	2816500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	XM_001721252.2	-1	model	p.R85L	0.386	219	0%	223	37.7%	90	42.2%	-	-	-	NULL
PRSS21	10942	genome.wustl.edu	37	16	2868830	2868830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006799.2	+1	reviewed	p.D137G	1.000	138	0%	132	32.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ENSG00000232055	0	genome.wustl.edu	37	16	2972982	2972982	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000429401	-1	known	p.Q45	0.947	43	0%	45	33.3%	0	-	-	-	-	HMMPfam_Ribosomal_L23eN
ADCY9	115	genome.wustl.edu	37	16	4165123	4165123	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001116.2	-1	reviewed	p.R107	0.989	22	0.000	7	0.714	1	0%	-	-	-	NULL
TMC7	79905	genome.wustl.edu	37	16	19047102	19047102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024847.3	+1	validated	p.S321N	0.963	198	0%	207	38.2%	2	0%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
UMOD	7369	genome.wustl.edu	37	16	20352634	20352634	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001008389.1	-1	reviewed	p.G452	0.962	47	0%	53	37.7%	1	100%	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_SM00241
NSMCE1	197370	genome.wustl.edu	37	16	27238129	27238129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_145080.3	-1	validated	p.R171Q	1.000	117	0%	94	27.7%	259	44.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_Nse1
NFATC2IP	84901	genome.wustl.edu	37	16	28963492	28963492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032815.3	+1	validated	p.L143I	0.956	171	0%	206	25.7%	14	28.5%	possibly_damaging(0.791)	tolerated(0.1)	deleterious(0.583)	NULL
SEZ6L2	26470	genome.wustl.edu	37	16	29889699	29889700	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_201575.2	-1	validated	p.P541fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TBC1D10B	26000	genome.wustl.edu	37	16	30376910	30376911	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015527.3	-1	validated	p.S321fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SRCAP	10847	genome.wustl.edu	37	16	30723431	30723431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006662.2	+1	validated	p.A590T	1.000	261	0%	312	32.4%	8	12.5%	unknown(0)	-	-	NULL
PHKG2	5261	genome.wustl.edu	37	16	30768328	30768328	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_000294.2	+1	reviewed	p.R377	0.988	103	0%	92	39.1%	126	45.2%	-	-	-	NULL
LOC100132941	100132941	genome.wustl.edu	37	16	33006536	33006536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	XM_001718037.2	+1	model	p.E20D	0.908	306	0%	268	29.1%	0	-	benign(0.185)	tolerated(0.14)	neutral(0.267)	HMMPfam_V-set
IRX6	79190	genome.wustl.edu	37	16	55360346	55360346	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024335.2	+1	validated	p.C48	1.000	13	0%	17	64.7%	0	-	-	-	-	NULL
GPR114	221188	genome.wustl.edu	37	16	57600601	57600601	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_153837.1	+1	provisional	p.Q213*	0.125	111	0%	96	34.4%	6	0%	-	-	-	HMMPfam_GPS,HMMSmart_SM00303
GPR114	221188	genome.wustl.edu	37	16	57608738	57608738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_153837.1	+1	provisional	p.R407Q	0.000	31	0%	28	50%	3	33.3%	benign(0.089)	tolerated(0.29)	neutral(0.036)	HMMPfam_7tm_2
CNGB1	1258	genome.wustl.edu	37	16	57935330	57935330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001297.4	-1	reviewed	p.R968W	1.000	126	0%	113	32.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00100,superfamily_cAMP-binding domain-like
MMP15	4324	genome.wustl.edu	37	16	58074473	58074473	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002428.2	+1	reviewed	p.L261	1.000	41	0%	26	38.5%	24	66.6%	-	-	-	HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,HMMSmart_ZnMc,superfamily_SSF55486
NFATC3	4775	genome.wustl.edu	37	16	68191841	68191841	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_173165.1	+1	reviewed	p.R491*	1.000	72	0%	70	28.6%	4	0%	-	-	-	superfamily_p53-like transcription factors,HMMPfam_RHD
MARVELD3	91862	genome.wustl.edu	37	16	71674369	71674369	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001017967.2	+1	validated	p.A224	0.442	93	0%	93	28%	13	46.1%	-	-	-	HMMPfam_MARVEL
ZNF821	55565	genome.wustl.edu	37	16	71898924	71898924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_017530.1	-1	provisional	p.T23M	1.000	242	0%	320	36.6%	7	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ADAMTS18	170692	genome.wustl.edu	37	16	77353782	77353782	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_199355.2	-1	reviewed	p.Y832	0.927	127	0%	120	30.8%	1	0%	-	-	-	HMMPfam_ADAM_spacer1
SLC38A8	146167	genome.wustl.edu	37	16	84050238	84050238	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001080442.1	-1	provisional	p.L350	0.704	81	0%	55	27.3%	0	-	-	-	-	HMMPfam_Aa_trans
DNAAF1	123872	genome.wustl.edu	37	16	84209610	84209610	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_178452.4	+1	reviewed	p.T590	0.000	53	0%	46	43.5%	26	38.4%	-	-	-	NULL
ATP2C2	9914	genome.wustl.edu	37	16	84438647	84438647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000420010	+1	known	p.A59T	0.000	48	0%	55	41.8%	4	75%	-	-	-	NULL
ANKRD11	29123	genome.wustl.edu	37	16	89371699	89371699	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_013275.4	-1	validated	p.G47	0.829	34	0%	39	28.2%	25	36%	-	-	-	NULL
OR1E2	8388	genome.wustl.edu	37	17	3336822	3336824	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003554.1	-1	provisional	p.F104in_frame_del	0.809:0.758:0.748	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ZZEF1	23140	genome.wustl.edu	37	17	3937462	3937462	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_015113.3	-1	validated	p.I2144N	0.925	301	0%	285	37.5%	5	40%	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	NULL
POLR2A	5430	genome.wustl.edu	37	17	7399263	7399263	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_000937.3	+1	validated	p.R33*	1.000	133	0%	97	23.7%	15	26.6%	-	-	-	HMMPfam_RNA_pol_Rpb1_1,superfamily_SSF64484
ODF4	146852	genome.wustl.edu	37	17	8243825	8243825	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_153007.4	+1	reviewed	e1+2	0.996	40	0%	43	34.9%	0	-	-	-	-	-
MYH10	4628	genome.wustl.edu	37	17	8393676	8393678	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005964.1	-1	validated	p.K1591in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Myosin_tail_1
MYH10	4628	genome.wustl.edu	37	17	8508247	8508247	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005964.1	-1	validated	p.I133M	1.000	163	0%	159	36.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
PIK3R5	23533	genome.wustl.edu	37	17	8793325	8793325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001142633.1	-1	validated	p.A259V	0.886	48	0%	54	40.7%	0	-	benign(0.027)	tolerated(0.3)	neutral(0.030)	HMMPfam_PI3K_1B_p101
DHRS7C	201140	genome.wustl.edu	37	17	9676238	9676238	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001105571.1	-1	validated	p.Y191	0.171	36	0%	33	33.3%	0	-	-	-	-	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains
MYH8	4626	genome.wustl.edu	37	17	10298509	10298509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002472.2	-1	reviewed	p.A1635T	1.000	448	0%	458	33.2%	0	-	benign(0.085)	deleterious(0.03)	neutral(0.370)	HMMPfam_Myosin_tail_1
FLII	2314	genome.wustl.edu	37	17	18157905	18157905	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002018.2	-1	reviewed	p.Q169*	1.000	15	0.000	8	0.500	13	7.6%	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
TRIM16L	147166	genome.wustl.edu	37	17	18638275	18638275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000414850	+1	known	p.R96H	0.857	130	0.8%	115	31.3%	12	33.3%	unknown(0)	-	-	NULL
PIGS	94005	genome.wustl.edu	37	17	26888605	26888605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_033198.3	-1	reviewed	p.R171W	0.688	31	0%	42	40.5%	18	27.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PIG-S
KIAA0100	9703	genome.wustl.edu	37	17	26964065	26964065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014680.2	-1	validated	p.C632Y	1.000	108	0%	97	40.2%	12	50%	possibly_damaging(0.796)	deleterious(0.03)	deleterious(0.663)	NULL
SUPT6H	6830	genome.wustl.edu	37	17	27001302	27001303	+	In_Frame_Ins	INS	-	-	GAG	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003170.3	+1	validated	p.41in_frame_insE	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NF1	4763	genome.wustl.edu	37	17	29556974	29556974	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001042492.2	+1	reviewed	p.M991K	1.000	402	0%	397	32.2%	3	0%	benign(0.32)	deleterious(0)	deleterious(0.544)	NULL
ENSG00000228768	0	genome.wustl.edu	37	17	29902590	29902590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000412403	+1	known	p.G123R	0.000	62	0%	59	44.1%	0	-	unknown(0)	-	-	NULL
GPR179	440435	genome.wustl.edu	37	17	36482505	36482506	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001004334.2	-1	validated	p.S2316fs	0.535:0.305	-	-	-	-	-	-	-	-	-	NULL
WNK4	65266	genome.wustl.edu	37	17	40939903	40939903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032387.4	+1	reviewed	p.L617I	1.000	112	0%	77	36.4%	4	0%	possibly_damaging(0.85)	deleterious(0.01)	deleterious(0.733)	superfamily_Protein kinase-like (PK-like)
WNK4	65266	genome.wustl.edu	37	17	40947634	40947634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000316085	+1	known	p.A601T	0.000	120	0%	111	33.3%	3	33.3%	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
GPATCH8	23131	genome.wustl.edu	37	17	42501838	42501838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001002909.1	-1	validated	p.A124V	1.000	140	0%	181	29.8%	3	66.6%	unknown(0)	deleterious(0.02)	-	NULL
GFAP	2670	genome.wustl.edu	37	17	42987845	42987845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000376990	-1	known	p.R437C	0.000	30	0%	27	18.5%	0	-	-	-	-	NULL
TBKBP1	9755	genome.wustl.edu	37	17	45777037	45777037	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014726.2	+1	validated	p.A282	0.009	177	0%	185	36.8%	1	100%	-	-	-	NULL
SAMD14	201191	genome.wustl.edu	37	17	48193422	48193422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_174920.2	-1	provisional	p.A178T	0.991	43	0%	26	42.3%	3	0%	benign(0.138)	tolerated(0.06)	neutral(0.334)	NULL
MSI2	124540	genome.wustl.edu	37	17	55729505	55729505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_138962.2	+1	reviewed	p.A258V	1.000	25	0%	16	62.5%	7	42.8%	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
USP32	84669	genome.wustl.edu	37	17	58288869	58288869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032582.3	-1	validated	p.T729I	1.000	278	0%	273	31.1%	2	50%	possibly_damaging(0.778)	tolerated(0.26)	neutral(0.325)	superfamily_SSF54001
CACNG4	27092	genome.wustl.edu	37	17	65026991	65026991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014405.2	+1	reviewed	p.K285N	0.998	216	0%	210	28.1%	0	-	possibly_damaging(0.891)	tolerated(0.06)	deleterious(0.673)	NULL
BPTF	2186	genome.wustl.edu	37	17	65890165	65890165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_182641.3	+1	reviewed	p.K809N	1.000	220	0%	257	40.1%	2	50%	probably_damaging(0.996)	tolerated(0.45)	deleterious(0.474)	NULL
SDK2	54549	genome.wustl.edu	37	17	71384114	71384114	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001144952.1	-1	provisional	p.L1419	1.000	5	0.000	12	0.333	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
QRICH2	84074	genome.wustl.edu	37	17	74274129	74274129	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032134.1	-1	provisional	p.S1520	1.000	23	0%	41	22%	9	22.2%	-	-	-	NULL
BAIAP2	10458	genome.wustl.edu	37	17	79058634	79058634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_017451.2	+1	reviewed	p.D74N	1.000	84	0%	70	40%	29	34.4%	possibly_damaging(0.618)	tolerated(0.23)	neutral(0.257)	HMMPfam_IMD
YES1	7525	genome.wustl.edu	37	18	745962	745963	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005433.3	-1	reviewed	p.S187fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
TGIF1	7050	genome.wustl.edu	37	18	3456426	3456426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_170695.2	+1	reviewed	p.A160T	0.788	368	0%	410	32.7%	117	42.7%	benign(0.061)	deleterious(0.03)	neutral(0.368)	NULL
IMPACT	55364	genome.wustl.edu	37	18	22029916	22029916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018439.3	+1	validated	p.P298H	0.979	151	0%	174	37.9%	9	33.3%	possibly_damaging(0.655)	tolerated(0.11)	deleterious(0.502)	superfamily_Ribosomal protein S5 domain 2-like
FAM59A	64762	genome.wustl.edu	37	18	29850248	29850248	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_022751.1	-1	provisional	p.K555	0.997	55	0%	48	27.1%	3	33.3%	-	-	-	NULL
FHOD3	80206	genome.wustl.edu	37	18	34335237	34335237	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_025135.2	+1	validated	p.R1288T	1.000	56	0%	51	41.2%	2	0%	possibly_damaging(0.649)	deleterious(0)	deleterious(0.672)	HMMSmart_FH2,superfamily_FH2_actin_bd
SLC14A2	8170	genome.wustl.edu	37	18	43205663	43205663	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_007163.3	+1	validated	p.N56H	0.318	159	0%	131	37.4%	0	-	possibly_damaging(0.708)	deleterious(0.01)	deleterious(0.661)	NULL
KATNAL2	83473	genome.wustl.edu	37	18	44626686	44626686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_031303.2	+1	validated	p.P407H	1.000	171	0%	175	22.3%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_AAA,superfamily_SSF52540
MYO5B	4645	genome.wustl.edu	37	18	47383252	47383252	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001080467.2	-1	reviewed	p.E1318V	1.000	108	0%	89	29.2%	0	-	benign(0.07)	tolerated(0.11)	neutral(0.277)	NULL
RAX	30062	genome.wustl.edu	37	18	56939726	56939726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_013435.2	-1	reviewed	p.R137Q	1.000	81	0%	32	40.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
SERPINB7	8710	genome.wustl.edu	37	18	61471761	61471761	+	Silent	SNP	A	A	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001040147.1	+1	validated	p.V345	0.481	128	0%	151	37.1%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
MBP	4155	genome.wustl.edu	37	18	74696818	74696818	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001025101.1	-1	reviewed	p.Y261	0.995	55	0%	36	44.4%	0	-	-	-	-	HMMPfam_Myelin_MBP
CTDP1	9150	genome.wustl.edu	37	18	77464901	77464901	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004715.3	+1	reviewed	p.Y252	0.810	58	0%	62	35.5%	11	18.1%	-	-	-	HMMPfam_NIF,HMMSmart_SM00577,superfamily_HAD-like
RBFA	79863	genome.wustl.edu	37	18	77804271	77804271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000262197	+1	known	p.Y184C	0.000	75	0%	96	36.5%	29	34.4%	unknown(0)	-	-	NULL
ENSG00000005206	0	genome.wustl.edu	37	19	2337594	2337594	+	Silent	SNP	C	C	T	rs192000517	by1000genomes	TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000452401	+1	known	p.R113	0.078	30	0%	15	40%	18	44.4%	-	-	-	HMMPfam_PA,superfamily_Transferrin receptor ectodomain apical domain
NFIC	4782	genome.wustl.edu	37	19	3382029	3382029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_205843.1	+1	validated	p.R108H	1.000	34	0%	34	35.3%	13	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MH1,HMMSmart_SM00523
STAP2	55620	genome.wustl.edu	37	19	4324566	4324566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_017720.2	-1	reviewed	p.V391M	0.001	11	0%	14	42.9%	45	22.2%	unknown(0)	tolerated(0.4)	-	NULL
PLIN3	10226	genome.wustl.edu	37	19	4847878	4847878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005817.4	-1	reviewed	p.G220D	0.846	25	0%	27	44.4%	45	37.7%	benign(0.197)	deleterious(0.03)	neutral(0.383)	HMMPfam_Perilipin,superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain
C3	718	genome.wustl.edu	37	19	6684437	6684437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_000064.2	-1	reviewed	p.Q1378H	1.000	261	0%	301	32.9%	108	0%	benign(0)	tolerated(0.17)	neutral(0.059)	superfamily_Alpha-macroglobulin receptor domain
TIMM44	10469	genome.wustl.edu	37	19	8002912	8002912	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006351.3	-1	validated	p.Y104	0.985	195	0%	146	36.3%	52	26.9%	-	-	-	NULL
FBN3	84467	genome.wustl.edu	37	19	8159445	8159445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000341066	-1	known	p.P50Q	1.000	37	0%	53	28.3%	0	-	possibly_damaging(0.903)	-	-	NULL
HNRNPM	4670	genome.wustl.edu	37	19	8520458	8520458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005968.3	+1	validated	p.V95F	1.000	233	0%	267	21.7%	98	0%	benign(0.413)	tolerated(0.06)	neutral(0.456)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
DNMT1	1786	genome.wustl.edu	37	19	10260303	10260303	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001130823.1	-1	reviewed	p.N804	0.003	208	0.5%	268	72.4%	31	64.5%	-	-	-	HMMPfam_BAH,HMMSmart_SM00439
AP1M2	10053	genome.wustl.edu	37	19	10685603	10685603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005498.4	-1	reviewed	p.Y384H	1.000	35	0%	29	24.1%	222	54%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
SLC44A2	57153	genome.wustl.edu	37	19	10745669	10745669	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_020428.3	+1	validated	p.L325	0.525	233	0%	198	67.2%	80	72.5%	-	-	-	HMMPfam_DUF580
ZNF653	115950	genome.wustl.edu	37	19	11597919	11597919	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_138783.3	-1	validated	p.P409R	0.721	112	0%	79	30.4%	20	60%	benign(0.219)	deleterious(0.01)	neutral(0.427)	NULL
KLF1	10661	genome.wustl.edu	37	19	12995838	12995838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006563.3	-1	reviewed	p.G317D	1.000	22	0%	19	42.1%	0	-	probably_damaging(0.99)	tolerated(0.7)	neutral(0.444)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RFX1	5989	genome.wustl.edu	37	19	14092936	14092936	+	Silent	SNP	T	T	C	rs35255340		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002918.4	-1	validated	p.P206	0.059	9	0.000	9	0.556	4	25%	-	-	-	NULL
NOTCH3	4854	genome.wustl.edu	37	19	15278084	15278084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_000435.2	-1	reviewed	p.M1780V	1.000	171	0%	120	44.2%	53	9.4%	benign(0)	tolerated(0.5)	neutral(0.010)	superfamily_Ankyrin repeat
NOTCH3	4854	genome.wustl.edu	37	19	15298094	15298094	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_000435.2	-1	reviewed	p.C554	0.999	26	0%	30	23.3%	16	18.7%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
AKAP8	10270	genome.wustl.edu	37	19	15484083	15484083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005858.2	-1	reviewed	p.R147H	0.892	23	0%	22	40.9%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CYP4F8	11283	genome.wustl.edu	37	19	15734054	15734054	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_007253.3	+1	reviewed	p.W262*	0.998	96	0%	102	34.3%	0	-	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	NULL
OR10H1	26539	genome.wustl.edu	37	19	15918479	15918479	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_013940.2	-1	validated	p.Y123	0.362	122	0%	137	37.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
AP1M1	8907	genome.wustl.edu	37	19	16318944	16318944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001130524.1	+1	reviewed	p.S128G	1.000	127	0%	136	33.1%	25	32%	benign(0.001)	tolerated(0.13)	neutral(0.253)	superfamily_Longin_like
MED26	9441	genome.wustl.edu	37	19	16687990	16687990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004831.3	-1	validated	p.H217Q	0.942	40	0%	22	31.8%	8	25%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	NULL
MED26	9441	genome.wustl.edu	37	19	16688023	16688023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000453758	-1	known	p.Q88K	0.340	46	0%	18	27.8%	8	25%	benign(0.242)	deleterious(0)	deleterious(0.469)	NULL
FKBP8	23770	genome.wustl.edu	37	19	18643550	18643550	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_012181.3	-1	reviewed	p.T360fs	0.944	-	-	-	-	-	-	-	-	-	superfamily_SSF48452
GMIP	51291	genome.wustl.edu	37	19	19745360	19745360	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_016573.2	-1	reviewed	p.D680	0.616	70	0%	47	31.9%	16	18.7%	-	-	-	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
ENSG00000231205	0	genome.wustl.edu	37	19	20607678	20607678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000502675	-1	known	p.I25T	0.002	39	0%	35	25.7%	0	-	-	-	-	NULL
URI1	8725	genome.wustl.edu	37	19	30496574	30496574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003796.2	+1	reviewed	p.V159A	1.000	152	0%	150	20.7%	18	27.7%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
HPN	3249	genome.wustl.edu	37	19	35556502	35556502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002151.2	+1	reviewed	p.N323D	1.000	48	0%	52	32.7%	36	55.5%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
RBM42	79171	genome.wustl.edu	37	19	36128132	36128132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024321.3	+1	provisional	p.R403H	1.000	55	0%	42	40.5%	339	41%	unknown(0)	deleterious(0.02)	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
IGFLR1	79713	genome.wustl.edu	37	19	36230802	36230802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024660.2	-1	provisional	p.A177V	0.019	50	0%	67	41.8%	25	4%	unknown(0)	tolerated(1)	-	NULL
ALKBH6	84964	genome.wustl.edu	37	19	36501828	36501828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032878.3	-1	validated	p.V130M	0.956	52	0%	46	26.1%	53	28.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_2OG-FeII_Oxy
IL28A	282616	genome.wustl.edu	37	19	39760411	39760411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_172138.1	+1	reviewed	p.R152W	0.003	50	0%	44	29.5%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CYP2B7P1	1556	genome.wustl.edu	37	19	41442084	41442084	+	RNA	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NR_001278.1	+1	provisional	NULL	0.330	90	0%	90	36.7%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	-
GSK3A	2931	genome.wustl.edu	37	19	42744129	42744129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_019884.2	-1	validated	p.V150A	1.000	28	0%	32	18.8%	44	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
FOXA3	3171	genome.wustl.edu	37	19	46375711	46375711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004497.2	+1	reviewed	p.L150F	1.000	284	0%	320	28.7%	8	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
RPL18	6141	genome.wustl.edu	37	19	49119901	49119905	+	Frame_Shift_Del	DEL	CAGCA	CAGCA	-	rs111332848		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	CAGCA	CAGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000450952	-1	known	p.V125fs	0.000:0.000:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
MAMSTR	284358	genome.wustl.edu	37	19	49216631	49216631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001130915.1	-1	validated	p.G381R	1.000	24	0%	22	50%	4	25%	unknown(0)	deleterious(0)	-	NULL
ZNF432	9668	genome.wustl.edu	37	19	52537844	52537844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014650.2	-1	provisional	p.H363R	0.988	403	0%	351	37.6%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF880	400713	genome.wustl.edu	37	19	52887739	52887739	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001145434.1	+1	validated	p.G302	0.996	219	0%	267	32.2%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF845	91664	genome.wustl.edu	37	19	53855458	53855458	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_138374.1	+1	validated	p.L510	0.000	237	0%	306	32.4%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LENG8	114823	genome.wustl.edu	37	19	54964743	54964743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_052925.2	+1	validated	p.G112S	0.201	43	0%	30	26.7%	21	23.8%	benign(0.002)	tolerated(0.12)	neutral(0.261)	NULL
NLRP5	126206	genome.wustl.edu	37	19	56538880	56538883	+	Frame_Shift_Del	DEL	GTTA	GTTA	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	GTTA	GTTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_153447.4	+1	reviewed	p.V429fs	0.041:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_NACHT
LOC646698	646698	genome.wustl.edu	37	19	56758626	56758626	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	XM_001725568.1	+1	model	p.N418	0.000	37	0%	51	47.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PEG3	5178	genome.wustl.edu	37	19	57326752	57326752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006210.2	-1	reviewed	p.A1020T	0.004	238	0%	208	21.6%	0	-	benign(0.188)	tolerated(0.46)	neutral(0.030)	NULL
PEG3	5178	genome.wustl.edu	37	19	57326820	57326820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006210.2	-1	reviewed	p.S997F	0.994	287	0%	249	37.8%	1	0%	probably_damaging(0.999)	tolerated(0.43)	deleterious(0.504)	superfamily_C2H2 and C2HC zinc fingers
ZNF547	284306	genome.wustl.edu	37	19	57879947	57879947	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_173631.2	+1	validated	p.Q8	0.041	103	0%	127	35.4%	2	0%	-	-	-	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZSCAN1	284312	genome.wustl.edu	37	19	58564855	58564855	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_182572.3	+1	validated	p.L221	0.061	68	0%	62	24.2%	0	-	-	-	-	NULL
ZNF584	201514	genome.wustl.edu	37	19	58921389	58921389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_173548.1	+1	provisional	p.L34F	0.007	144	0%	129	37.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF132	7691	genome.wustl.edu	37	19	58945739	58945739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_003433.3	-1	validated	p.N358D	0.000	121	0%	137	38%	0	-	benign(0.418)	tolerated(0.21)	neutral(0.179)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SIGLEC1	6614	genome.wustl.edu	37	20	3672589	3672589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_023068.3	-1	reviewed	p.L1431M	0.538	58	0%	33	33.3%	1	0%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
C20orf196	149840	genome.wustl.edu	37	20	5753596	5753596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_152504.2	+1	predicted	p.Y29H	0.001	211	0%	200	35%	11	18.1%	probably_damaging(0.996)	tolerated(0.28)	deleterious(0.493)	NULL
GZF1	64412	genome.wustl.edu	37	20	23345911	23345919	+	In_Frame_Del	DEL	GGAGGAGGA	GGAGGAGGA	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	GGAGGAGGA	GGAGGAGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_022482.3	+1	validated	p.EEE301in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001	-	-	-	-	-	-	-	-	-	NULL
HM13	81502	genome.wustl.edu	37	20	30142620	30142622	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	GTC	GTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_178581.1	+1	reviewed	p.V267in_frame_del	1.000:1.000:0.995	-	-	-	-	-	-	-	-	-	HMMSmart_PSN,HMMPfam_Peptidase_A22B
C20orf132	140699	genome.wustl.edu	37	20	35748243	35748243	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000400441	-1	known	e18-2	1.000	317	0%	244	29.1%	0	-	-	-	-	-
RPRD1B	58490	genome.wustl.edu	37	20	36694564	36694564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_021215.3	+1	validated	p.A246V	1.000	191	0%	183	20.2%	11	27.2%	possibly_damaging(0.932)	tolerated(0.08)	deleterious(0.678)	NULL
PLCG1	5335	genome.wustl.edu	37	20	39802942	39802942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002660.2	+1	reviewed	p.R1275Q	0.992	144	0%	110	35.5%	84	35.7%	benign(0.285)	tolerated(0.12)	neutral(0.348)	NULL
C20orf111	51526	genome.wustl.edu	37	20	42835571	42835571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_016470.6	-1	provisional	p.E9D	0.998	180	0%	206	28.6%	13	46.1%	benign(0.008)	deleterious(0)	neutral(0.445)	HMMPfam_DUF776
STK4	6789	genome.wustl.edu	37	20	43615854	43615854	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_006282.2	+1	reviewed	p.R148*	1.000	261	0%	273	36.6%	2	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LOC100287206	100287206	genome.wustl.edu	37	20	47247258	47247258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	XM_002343709.1	+1	model	p.W159L	0.000	30	0%	22	22.7%	0	-	-	-	-	NULL
ZNFX1	57169	genome.wustl.edu	37	20	47864922	47864923	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_021035.2	-1	validated	p.C1546fs	0.998:0.524	-	-	-	-	-	-	-	-	-	HMMPfam_zf-NF-X1,HMMSmart_SM00438
TMEM189	387521	genome.wustl.edu	37	20	48746097	48746097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_199129.2	-1	reviewed	p.R155H	0.941	44	0%	52	50%	34	41.1%	benign(0.244)	tolerated(0.51)	neutral(0.034)	HMMPfam_Kua-UEV1_localn
C20orf195	79025	genome.wustl.edu	37	20	62187307	62187307	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_024059.2	+1	predicted	p.S97	0.494	14	0%	15	26.7%	0	-	-	-	-	NULL
BACH1	571	genome.wustl.edu	37	21	30698548	30698548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001186.2	+1	reviewed	p.A135T	0.902	270	0%	287	37.6%	1	0%	benign(0.017)	tolerated(0.31)	neutral(0.028)	NULL
BRWD1	54014	genome.wustl.edu	37	21	40569083	40569083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018963.3	-1	reviewed	p.T1971I	0.000	209	0%	198	37.4%	13	38.4%	possibly_damaging(0.517)	deleterious(0.05)	deleterious(0.519)	superfamily_WD40 repeat-like
KRTAP10-4	386672	genome.wustl.edu	37	21	45994696	45994696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_198687.1	+1	reviewed	p.C354Y	1.000	284	0%	196	30.1%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Keratin_B2
CECR2	27443	genome.wustl.edu	37	22	18027933	18027933	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000400573	+1	known	p.Q964*	0.723	36	0%	30	20%	0	-	-	-	-	NULL
PRODH	5625	genome.wustl.edu	37	22	18912654	18912654	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000457083	-1	known	p.W116*	0.980	35	0%	25	32%	24	37.5%	benign(0.009)	tolerated(0.14)	neutral(0.250)	NULL
CRKL	1399	genome.wustl.edu	37	22	21288222	21288222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005207.3	+1	reviewed	p.P156H	1.000	352	0%	389	32.9%	14	42.8%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_SH2 domain
C22orf23	84645	genome.wustl.edu	37	22	38343316	38343316	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_032561.2	-1	predicted	p.S107	0.997	91	0%	85	31.8%	5	20%	-	-	-	HMMPfam_UPF0193
DDX17	10521	genome.wustl.edu	37	22	38882079	38882079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001098504.1	-1	reviewed	p.R686Q	1.000	131	0%	103	32%	134	39.5%	unknown(0)	deleterious(0)	-	NULL
MGAT3	4248	genome.wustl.edu	37	22	39884786	39884786	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001098270.1	+1	reviewed	p.S478	0.908	11	0%	15	33.3%	0	-	-	-	-	HMMPfam_Glyco_transf_17
TNRC6B	23112	genome.wustl.edu	37	22	40706951	40706951	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000446273	+1	known	p.Q1149R	0.999	56	1.8%	46	26.1%	2	100%	-	-	-	NULL
MCHR1	2847	genome.wustl.edu	37	22	41077241	41077241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_005297.3	+1	reviewed	p.A193V	1.000	167	0%	181	38.7%	0	-	benign(0.048)	tolerated(0.16)	neutral(0.062)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DNAJB7	150353	genome.wustl.edu	37	22	41257740	41257740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_145174.1	-1	provisional	p.G87S	0.000	206	0%	237	33.3%	0	-	benign(0.008)	tolerated(0.22)	neutral(0.042)	superfamily_DnaJ_N
CYP2D7P1	1564	genome.wustl.edu	37	22	42537915	42537915	+	RNA	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NR_002570.2	-1	validated	NULL	1.000	36	0%	20	45%	4	75%	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	-
TLR7	51284	genome.wustl.edu	37	X	12903909	12903909	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_016562.3	+1	reviewed	p.I94	0.167	758	0%	773	34.7%	0	-	-	-	-	superfamily_L domain-like
SSX5	6758	genome.wustl.edu	37	X	48049628	48049628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_021015.3	-1	reviewed	p.G177E	0.000	394	0%	422	34.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
SYP	6855	genome.wustl.edu	37	X	49048050	49048050	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	ENST00000472598	-1	known	p.T152M	0.952	22	0%	17	35.3%	0	-	-	-	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53569441	53569441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_031407.4	-1	reviewed	p.D3813E	0.998	156	0%	144	32.6%	52	67.3%	unknown(0)	tolerated(0.58)	-	NULL
PAGE2	203569	genome.wustl.edu	37	X	55117036	55117036	+	Silent	SNP	T	T	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_207339.2	+1	provisional	p.A62	0.000	115	0%	171	31%	0	-	-	-	-	HMMPfam_GAGE
STARD8	9754	genome.wustl.edu	37	X	67932829	67932829	+	Splice_Site	SNP	T	T	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001142503.2	+1	reviewed	e3+2	1.000	52	0%	59	35.6%	0	-	-	-	-	-
CXorf65	158830	genome.wustl.edu	37	X	70324255	70324255	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001025265.2	-1	validated	e5-1	0.045	68	0%	54	33.3%	0	-	-	-	-	-
ARMCX2	9823	genome.wustl.edu	37	X	100912398	100912398	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014782.5	-1	reviewed	p.A59	0.507	165	0%	194	37.1%	8	62.5%	-	-	-	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101910196	101910196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001099410.1	+1	reviewed	p.S452N	0.007	240	0%	226	31.4%	2	50%	benign(0.187)	tolerated(0.17)	neutral(0.076)	NULL
CAPN6	827	genome.wustl.edu	37	X	110494201	110494201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014289.3	-1	reviewed	p.M368V	0.999	1212	0%	1521	30%	55	72.7%	benign(0.001)	tolerated(0.3)	neutral(0.029)	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2
LONRF3	79836	genome.wustl.edu	37	X	118145842	118145842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001031855.1	+1	reviewed	p.H573Y	1.000	175	0%	163	29.4%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_LON,HMMSmart_SM00464
STAG2	10735	genome.wustl.edu	37	X	123229236	123229236	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001042749.1	+1	validated	p.N1240	1.000	206	0%	250	29.6%	27	66.6%	-	-	-	NULL
ODZ1	10178	genome.wustl.edu	37	X	123779173	123779173	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014253.3	-1	reviewed	p.L566	1.000	501	0%	465	40.2%	0	-	-	-	-	NULL
ODZ1	10178	genome.wustl.edu	37	X	123838905	123838905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_014253.3	-1	reviewed	p.A325T	1.000	613	0%	635	19.1%	0	-	possibly_damaging(0.804)	tolerated(0.1)	deleterious(0.589)	NULL
DCAF12L1	139170	genome.wustl.edu	37	X	125685420	125685420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_178470.4	-1	reviewed	p.L391P	0.000	109	0%	110	31.8%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
SASH3	54440	genome.wustl.edu	37	X	128927024	128927024	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_018990.3	+1	reviewed	p.L287	0.995	98	0%	85	31.8%	15	0%	-	-	-	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2
FAM122B	159090	genome.wustl.edu	37	X	133923150	133923150	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_145284.5	-1	validated	p.Q81*	1.000	140	0%	178	34.8%	21	0%	-	-	-	NULL
RBMX	27316	genome.wustl.edu	37	X	135961586	135961588	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_002139.3	-1	reviewed	p.MVEA1in_frame_delWLK	1.000	-	-	-	-	-	-	-	-	-	NULL
ATP11C	286410	genome.wustl.edu	37	X	138882264	138882264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_173694.4	-1	validated	p.V225A	1.000	302	0%	281	33.8%	0	-	possibly_damaging(0.58)	tolerated(0.54)	neutral(0.207)	superfamily_Calcium ATPase transduction domain A
PNMA5	114824	genome.wustl.edu	37	X	152159783	152159783	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001103150.1	-1	validated	p.V120	0.134	228	0%	172	30.2%	0	-	-	-	-	NULL
PNMA5	114824	genome.wustl.edu	37	X	152160101	152160101	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_001103150.1	-1	validated	p.D14	0.154	258	0%	168	35.1%	0	-	-	-	-	NULL
IDH3G	3421	genome.wustl.edu	37	X	153053545	153053545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JZ-01A-11W-A062-09	TCGA-B5-A0JZ-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4ee60d98-1cb1-497b-8552-96fd18630057	75d2462e-1dda-4da1-9527-a938d336605e	NM_004135.2	-1	reviewed	p.R131Q	0.995	111	0%	87	39.1%	97	0%	possibly_damaging(0.805)	tolerated(0.07)	deleterious(0.622)	HMMPfam_Iso_dh,superfamily_SSF53659
