Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
USP48	84196	genome.wustl.edu	37	1	22078013	22078013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_032236.5	-1	reviewed	p.S254L	1.000	175	0%	311	38.3%	21	33.3%	benign(0.001)	tolerated(0.2)	neutral(0.049)	HMMPfam_UCH,superfamily_Cysteine proteinases
ARID1A	8289	genome.wustl.edu	37	1	27106799	27106799	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_006015.4	+1	reviewed	p.T2138fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35476529	35476529	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_007167.3	-1	validated	p.G391R	0.002	74	0%	112	38.4%	3	0%	probably_damaging(0.986)	tolerated(0.37)	neutral(0.454)	NULL
AGL	178	genome.wustl.edu	37	1	100356892	100356892	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_000028.2	+1	reviewed	p.R977*	0.998	193	0%	327	36.1%	3	0%	-	-	-	NULL
ZBTB7B	51043	genome.wustl.edu	37	1	154988209	154988235	+	In_Frame_Del	DEL	CAGGCAAACTGCCTCGCCACATGAGGA	CAGGCAAACTGCCTCGCCACATGAGGA	-	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	CAGGCAAACTGCCTCGCCACATGAGGA	CAGGCAAACTGCCTCGCCACATGAGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_015872.2	+1	validated	p.GKLPRHMRT359in_frame_del	0.992:0.006:0.981:1.000:1.000:1.000:1.000:0.991:1.000:1.000:1.000:1.000:1.000:0.902:1.000:1.000:0.979:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZBTB7B	51043	genome.wustl.edu	37	1	154988235	154988235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_015872.2	+1	validated	p.T367A	1.000	25	0%	22	31.8%	20	10%	possibly_damaging(0.862)	deleterious(0.02)	deleterious(0.716)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ADAM15	8751	genome.wustl.edu	37	1	155032820	155032820	+	Splice_Site	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_207197.1	+1	reviewed	e18+1	0.999	56	0%	136	60.3%	5	100%	-	-	-	-
SCAMP3	10067	genome.wustl.edu	37	1	155226122	155226122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_005698.2	-1	reviewed	p.R329Q	1.000	19	0%	47	21.3%	172	30.2%	unknown(0)	tolerated(0.92)	-	NULL
CLK2	1196	genome.wustl.edu	37	1	155234212	155234212	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	ENST00000424156	-1	known	p.W170*	0.000	104	0%	268	22.8%	3	66.6%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
RGS16	6004	genome.wustl.edu	37	1	182571199	182571199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_002928.3	-1	reviewed	p.A97T	1.000	88	0%	220	17.7%	62	27.4%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
C4BPA	722	genome.wustl.edu	37	1	207317180	207317180	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_000715.3	+1	reviewed	p.E488Q	0.017	437	0%	522	20.1%	16	31.2%	benign(0.364)	tolerated(0.31)	neutral(0.143)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
HHIPL2	79802	genome.wustl.edu	37	1	222696035	222696035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_024746.3	-1	validated	p.R695C	0.090	172	0%	411	64.2%	0	-	benign(0.025)	deleterious(0.01)	neutral(0.407)	NULL
OR2W5	441932	genome.wustl.edu	37	1	247654943	247654943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_001004698.2	+1	validated	p.R172C	0.000	56	0%	159	25.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR14K1	343170	genome.wustl.edu	37	1	247902807	247902807	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	ENST00000283225	+1	known	p.S297	0.000	151	0%	304	21.1%	1	0%	-	-	-	superfamily_SSF81321
PUM2	23369	genome.wustl.edu	37	2	20508090	20508090	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_015317.1	-1	provisional	p.Y258	1.000	37	0%	54	37%	5	100%	-	-	-	NULL
MOB1A	55233	genome.wustl.edu	37	2	74392328	74392328	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	ENST00000409969	-1	known	p.S142	0.003	122	0%	144	39.6%	0	-	-	-	-	HMMPfam_Mob1_phocein
CDK15	65061	genome.wustl.edu	37	2	202698630	202698630	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_139158.1	+1	provisional	p.H171	1.000	594	0%	332	35.2%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ABCA12	26154	genome.wustl.edu	37	2	215823162	215823162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_173076.2	-1	reviewed	p.D1986N	0.997	163	0%	187	41.7%	0	-	benign(0.188)	deleterious(0.01)	neutral(0.423)	NULL
VHL	7428	genome.wustl.edu	37	3	10188287	10188287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_000551.2	+1	reviewed	p.G144R	1.000	226	0%	315	38.1%	20	25%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_VHL,superfamily_VHL
SEMA3F	6405	genome.wustl.edu	37	3	50211311	50211316	+	In_Frame_Del	DEL	CGACCG	CGACCG	-	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	CGACCG	CGACCG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_004186.3	+1	validated	p.DR67in_frame_del	0.885:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
CPOX	1371	genome.wustl.edu	37	3	98304389	98304389	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_000097.5	-1	reviewed	p.S356R	1.000	54	0%	84	50%	13	30.7%	possibly_damaging(0.52)	deleterious(0.02)	deleterious(0.558)	HMMPfam_Coprogen_oxidas,superfamily_Coprogen_oxidas
PIK3CA	5290	genome.wustl.edu	37	3	178928110	178928115	+	In_Frame_Del	DEL	GATCAA	GATCAA	-	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	GATCAA	GATCAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_006218.2	+1	reviewed	p.GSN463in_frame_delD	1.000:0.997:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_PI3K_C2,superfamily_C2_CaLB
METAP1	23173	genome.wustl.edu	37	4	99978957	99978957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_015143.2	+1	validated	p.M329V	1.000	812	0%	560	39.1%	54	53.7%	benign(0.356)	deleterious(0)	deleterious(0.557)	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
KIF2A	3796	genome.wustl.edu	37	5	61654113	61654113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_001098511.1	+1	validated	p.E287K	1.000	142	0%	263	38%	6	33.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
PCDHA10	56139	genome.wustl.edu	37	5	140237073	140237073	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_018901.2	+1	reviewed	p.D480	1.000	11	0%	43	74.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ZFAND3	60685	genome.wustl.edu	37	6	38120118	38120118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_021943.2	+1	validated	p.R213W	1.000	40	0%	93	47.3%	81	60.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MANEA	79694	genome.wustl.edu	37	6	96034881	96034882	+	Frame_Shift_Ins	INS	-	-	TATG	rs78175628		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	ENST00000369293	+1	known	p.V190fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
PARK2	5071	genome.wustl.edu	37	6	161990445	161990445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_004562.2	-1	reviewed	p.G292D	1.000	151	0%	262	46.2%	0	-	benign(0.054)	deleterious(0.01)	neutral(0.409)	NULL
SPDYE5	442590	genome.wustl.edu	37	7	75126032	75126032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_001099435.2	+1	validated	p.F99L	0.002	380	0%	331	16.3%	2	0%	-	-	-	NULL
TECPR1	25851	genome.wustl.edu	37	7	97863162	97863162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_015395.1	-1	provisional	p.D415N	0.976	5	0.000	38	0.395	7	28.5%	possibly_damaging(0.951)	tolerated(0.42)	neutral(0.408)	NULL
OR6B1	135946	genome.wustl.edu	37	7	143701315	143701315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_001005281.1	+1	provisional	p.V76M	0.022	164	0%	215	36.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KIF5B	3799	genome.wustl.edu	37	10	32306235	32306235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_004521.2	-1	validated	p.R866Q	1.000	273	0%	370	41.9%	41	53.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PTEN	5728	genome.wustl.edu	37	10	89624254	89624256	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	ENST00000371953	+1	known	p.S10in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89717609	89717609	+	Splice_Site	SNP	G	G	C	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	ENST00000371953	+1	known	e7-1	1.000	204	0.5%	136	44.1%	1	100%	-	-	-	-
PSD	5662	genome.wustl.edu	37	10	104176485	104176485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_002779.3	-1	provisional	p.R104H	1.000	6	0.000	23	0.217	0	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	NULL
SYT8	90019	genome.wustl.edu	37	11	1858596	1858596	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_138567.3	+1	validated	p.E381*	0.857	3	0.000	25	0.520	0	-	-	-	-	NULL
VWCE	220001	genome.wustl.edu	37	11	61026327	61026327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	ENST00000301770	-1	known	p.G610R	0.000	22	0%	75	50.7%	5	20%	-	-	-	NULL
PC	5091	genome.wustl.edu	37	11	66631260	66631260	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_000920.3	-1	reviewed	p.R451	0.004	14	0%	97	48.5%	7	57.1%	-	-	-	HMMPfam_Biotin_carb_C,superfamily_Rudmnt_hyb_motif
ATM	472	genome.wustl.edu	37	11	108180958	108180959	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_000051.3	+1	reviewed	p.Q1946fs	1.000:0.999	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
NUAK1	9891	genome.wustl.edu	37	12	106480618	106480618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_014840.2	-1	validated	p.S136N	1.000	160	0%	108	46.3%	0	-	possibly_damaging(0.801)	deleterious(0.04)	deleterious(0.650)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DHRS4L2	317749	genome.wustl.edu	37	14	24470115	24470115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_198083.2	+1	validated	p.A151V	0.815	488	0%	486	33.3%	25	0%	benign(0.008)	tolerated(0.24)	neutral(0.037)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
HECTD1	25831	genome.wustl.edu	37	14	31590627	31590627	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_015382.2	-1	validated	p.V1734L	0.999	20	0%	73	43.8%	35	57.1%	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
KIF7	374654	genome.wustl.edu	37	15	90174806	90174806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_198525.2	-1	validated	p.R1011C	1.000	16	0%	25	40%	7	42.8%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
USP7	7874	genome.wustl.edu	37	16	8999107	8999107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_003470.2	-1	validated	p.D504N	1.000	218	0.5%	194	36.1%	44	43.1%	benign(0.002)	tolerated(0.58)	neutral(0.005)	HMMPfam_UCH,superfamily_SSF54001
SLC9A5	6553	genome.wustl.edu	37	16	67293485	67293485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_004594.2	+1	validated	p.V546I	0.999	70	0%	212	34%	0	-	benign(0.016)	tolerated(0.55)	neutral(0.007)	NULL
SGSM2	9905	genome.wustl.edu	37	17	2274578	2274578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_014853.2	+1	validated	p.M482I	1.000	5	0.000	30	0.433	15	40%	benign(0.205)	tolerated(0.49)	neutral(0.030)	NULL
RASD1	51655	genome.wustl.edu	37	17	17399468	17399470	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_016084.3	-1	reviewed	p.K9in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ZFP161	7541	genome.wustl.edu	37	18	5290626	5290626	+	RNA	DEL	G	G	-	rs147986085	byCluster;by1000genomes	TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NR_026569.1	-1	validated	NULL	0.990	-	-	-	-	-	-	-	-	-	-
ENSG00000231452	0	genome.wustl.edu	37	18	12068091	12068091	+	Missense_Mutation	SNP	C	C	T	rs145442565	by1000genomes	TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	ENST00000455542	-1	known	p.R57Q	1.000	11	0%	31	45.2%	1	0%	-	-	-	NULL
KCNG2	26251	genome.wustl.edu	37	18	77659559	77659559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_012283.1	+1	reviewed	p.G382R	1.000	18	0%	38	31.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
ZNF536	9745	genome.wustl.edu	37	19	31040282	31040282	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_014717.1	+1	provisional	p.E1252	1.000	6	0.000	19	0.474	0	-	-	-	-	NULL
LENG9	94059	genome.wustl.edu	37	19	54973989	54973991	+	In_Frame_Del	DEL	CCT	CCT	-	rs140013148	byCluster;by1000genomes	TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_198988.1	-1	validated	p.E262in_frame_del	0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
TTLL9	164395	genome.wustl.edu	37	20	30522508	30522508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_001008409.2	+1	provisional	p.T274M	0.999	15	0%	39	28.2%	0	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
EIF2S3	1968	genome.wustl.edu	37	X	24091292	24091292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_001415.3	+1	reviewed	p.D423Y	1.000	450	0%	402	39.8%	387	45.4%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,HMMPfam_eIF2_C
FOXO4	4303	genome.wustl.edu	37	X	70316510	70316510	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_005938.3	+1	reviewed	p.P44	0.000	57	0%	64	40.6%	4	0%	-	-	-	NULL
RGAG4	340526	genome.wustl.edu	37	X	71350299	71350299	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_001024455.3	-1	validated	p.K364	0.000	325	0%	384	38.5%	0	-	-	-	-	NULL
GLUD2	2747	genome.wustl.edu	37	X	120181719	120181719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_012084.3	+1	reviewed	p.E61K	0.133	6	0.000	27	0.519	1	0%	benign(0.001)	tolerated(0.3)	neutral(0.029)	superfamily_SSF53223
HCFC1	3054	genome.wustl.edu	37	X	153220133	153220133	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MT-01A-11D-A10B-09	TCGA-BG-A0MT-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5b1aa196-8837-4be0-8401-0cd7a396bedf	3a3ded86-403d-4780-b7d6-a947fcee5d40	NM_005334.2	-1	reviewed	p.T1239	0.326	9	0.000	54	0.259	19	0%	-	-	-	NULL
