Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431.1	human	genbank	58_37c	-1	reviewed	missense	c.49	p.E17K	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like	-	no_errors
CCDC66	285331	genome.wustl.edu	37	3	56591278	56591279	+	Frame_Shift_Ins	INS	-	-	GGGGTAAGCA	rs72430164	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	3	56591278	56591279	-	GGGGTAAGCA	INS	CCDC66	NM_001141947.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.8_9	p.D5fs	1.000:1.000	NULL	NULL	-	no_errors
CD40LG	959	genome.wustl.edu	37	X	135732438	135732438	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	X	135732438	135732438	G	A	SNP	CD40LG	NM_000074.2	human	genbank	58_37c	+1	reviewed	missense	c.170	p.R57K	0.999	NULL	HMMPfam_TNF,HMMSmart_TNF,PatternScan_TNF_1,superfamily_TNF_like	-	no_errors
CKAP2L	150468	genome.wustl.edu	37	2	113509932	113509932	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	2	113509932	113509932	T	G	SNP	CKAP2L	NM_152515.3	human	genbank	58_37c	-1	validated	missense	c.1514	p.E505A	0.999	NULL	NULL	-	no_errors
CNTNAP2	26047	genome.wustl.edu	37	7	146805369	146805369	+	Silent	SNP	C	C	T	rs142984073	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	7	146805369	146805369	C	T	SNP	CNTNAP2	NM_014141.5	human	genbank	58_37c	+1	reviewed	silent	c.681	p.H227	0.867	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00282,superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors
ENSG00000213701	0	genome.wustl.edu	37	5	96392364	96392364	+	Missense_Mutation	SNP	C	C	T	rs146374932	by1000genomes	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	5	96392364	96392364	C	T	SNP	ENSG00000213701	ENST00000395767	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-96392364	NULL	1.000	-	-	-	no_coding_region:pseudogene
FBXW9	84261	genome.wustl.edu	37	19	12802058	12802058	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	19	12802058	12802058	C	T	SNP	FBXW9	NM_032301.2	human	genbank	58_37c	-1	validated	missense	c.805	p.V269M	0.993	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40	HMMSmart_WD40,HMMPfam_F-box,HMMSmart_FBOX,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_SSF81383	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	10	8111433	8111434	CA	-	DEL	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors
KRT38	8687	genome.wustl.edu	37	17	39595484	39595484	+	Nonsense_Mutation	SNP	G	G	A	rs148768443	byFrequency	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	17	39595484	39595484	G	A	SNP	KRT38	NM_006771.3	human	genbank	58_37c	-1	reviewed	nonsense	c.703	p.Q235*	0.996	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
LFNG	3955	genome.wustl.edu	37	7	2566514	2566514	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	7	2566514	2566514	C	T	SNP	LFNG	NM_001040167.1	human	genbank	58_37c	+1	reviewed	silent	c.1032	p.V344	0.915	HMMPfam_Fringe	HMMPfam_Fringe	-	no_errors
PAK6	56924	genome.wustl.edu	37	15	40557142	40557142	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	15	40557142	40557142	C	T	SNP	PAK6	NM_001128628.1	human	genbank	58_37c	+1	reviewed	silent	c.156	p.P52	0.018	HMMPfam_PBD	HMMPfam_PBD,HMMSmart_SM00285,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PDCD6IP	10015	genome.wustl.edu	37	3	33896710	33896711	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	3	33896710	33896711	AT	-	DEL	PDCD6IP	NM_013374.4	human	genbank	58_37c	+1	validated	frame_shift_del	c.2078_2079	p.I694fs	1.000:1.000	NULL	HMMPfam_BRO1	-	no_errors
PPP1CC	5501	genome.wustl.edu	37	12	111160057	111160057	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	12	111160057	111160057	A	G	SNP	PPP1CC	NM_002710.2	human	genbank	58_37c	-1	validated	silent	c.765	p.Y255	1.000	HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases	HMMPfam_Metallophos,HMMSmart_SM00156,PatternScan_SER_THR_PHOSPHATASE,superfamily_Metallo-dependent phosphatases	-	no_errors
RAB5C	5878	genome.wustl.edu	37	17	40280336	40280336	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	17	40280336	40280336	G	A	SNP	RAB5C	NM_004583.2	human	genbank	58_37c	-1	validated	silent	c.384	p.V128	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RBMXL3	139804	genome.wustl.edu	37	X	114426765	114426765	+	Missense_Mutation	SNP	C	C	T	rs11795689	byCluster;byFrequency;by1000genomes;byHapmap	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	X	114426765	114426765	C	T	SNP	RBMXL3	NM_001145346.1	human	genbank	58_37c	+1	validated	missense	c.2761	p.P921S	0.269	NULL	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
RNF6	6049	genome.wustl.edu	37	13	26793710	26793710	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	13	26793710	26793710	T	C	SNP	RNF6	NM_005977.3	human	genbank	58_37c	-1	reviewed	missense	c.77	p.E26G	1.000	NULL	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
RTN4IP1	84816	genome.wustl.edu	37	6	107070840	107070840	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	6	107070840	107070840	A	G	SNP	RTN4IP1	NM_032730.4	human	genbank	58_37c	-1	reviewed	silent	c.279	p.G93	0.634	superfamily_GroES-like,HMMPfam_ADH_N	PatternScan_QOR_ZETA_CRYSTAL,superfamily_GroES-like,HMMPfam_ADH_zinc_N,HMMPfam_ADH_N,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
SCAP	22937	genome.wustl.edu	37	3	47455768	47455768	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	3	47455768	47455768	G	A	SNP	SCAP	NM_012235.2	human	genbank	58_37c	-1	reviewed	missense	c.3496	p.L1166F	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
SERPINA5	5104	genome.wustl.edu	37	14	95058404	95058404	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	14	95058404	95058404	A	T	SNP	SERPINA5	NM_000624.4	human	genbank	58_37c	+1	validated	missense	c.1049	p.K350I	0.946	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins	HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN,superfamily_Serpins	-	no_errors
TFAP2A	7020	genome.wustl.edu	37	6	10398931	10398931	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	6	10398931	10398931	A	G	SNP	TFAP2A	NM_003220.2	human	genbank	58_37c	-1	reviewed	missense	c.1033	p.C345R	1.000	HMMPfam_TF_AP-2	HMMPfam_TF_AP-2	-	no_errors
TMEM27	57393	genome.wustl.edu	37	X	15682471	15682471	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	X	15682471	15682471	C	T	SNP	TMEM27	NM_020665.4	human	genbank	58_37c	-1	reviewed	missense	c.106	p.G36R	1.000	NULL	NULL	-	no_errors
