Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ALOX12	239	genome.wustl.edu	37	17	6900318	6900318	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	6900318	6900318	G	C	SNP	ALOX12	NM_000697.2	human	genbank	58_37c	+1	validated	missense	c.309	p.E103D	0.010	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_2,PatternScan_LIPOXYGENASE_1,superfamily_Lipoxygenase	-	no_errors
AUTS2	26053	genome.wustl.edu	37	7	70252221	70252221	+	Missense_Mutation	SNP	G	G	T	rs147106727	byFrequency	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	7	70252221	70252221	G	T	SNP	AUTS2	NM_015570.2	human	genbank	58_37c	+1	validated	missense	c.2335	p.D779Y	1.000	NULL	NULL	-	no_errors
BRP44	25874	genome.wustl.edu	37	1	167889845	167889845	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	1	167889845	167889845	C	T	SNP	BRP44	NM_001143674.1	human	genbank	58_37c	-1	validated	missense	c.175	p.D59N	1.000	HMMPfam_UPF0041	HMMPfam_UPF0041	-	no_errors
CBX2	84733	genome.wustl.edu	37	17	77758181	77758181	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	77758181	77758181	C	T	SNP	CBX2	NM_005189.2	human	genbank	58_37c	+1	reviewed	silent	c.939	p.S313	0.013	NULL	HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,superfamily_Chromo domain-like	-	no_errors
CBX8	57332	genome.wustl.edu	37	17	77768660	77768660	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	77768660	77768660	C	T	SNP	CBX8	NM_020649.2	human	genbank	58_37c	-1	validated	missense	c.944	p.S315N	0.060	NULL	HMMPfam_Chromo,HMMSmart_CHROMO,PatternScan_CHROMO_1,superfamily_Chromodomain-like	-	no_errors
CERKL	375298	genome.wustl.edu	37	2	182438569	182438569	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	2	182438569	182438569	G	T	SNP	CERKL	NM_001030311.2	human	genbank	58_37c	-1	reviewed	missense	c.524	p.P175H	1.000	HMMPfam_DAGK_cat	HMMPfam_DAGK_cat	-	no_errors
CTCF	10664	genome.wustl.edu	37	16	67645922	67645922	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	16	67645922	67645922	C	A	SNP	CTCF	NM_006565.2	human	genbank	58_37c	+1	reviewed	missense	c.850	p.H284N	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
DNAH9	1770	genome.wustl.edu	37	17	11597194	11597194	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	11597194	11597194	A	G	SNP	DNAH9	NM_001372.3	human	genbank	58_37c	+1	reviewed	missense	c.4624	p.R1542G	1.000	HMMPfam_DHC_N2	HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000247772	0	genome.wustl.edu	37	11	47379060	47379061	+	RNA	DEL	CA	CA	-	rs5791758	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	11	47379060	47379061	CA	-	DEL	SPI1	NM_001080547.1	human	genbank	58_37c	-1	reviewed	intronic	c.496+1334_496+1333	e4+1334	0.212:0.226	-	-	-	no_errors
FAT4	79633	genome.wustl.edu	37	4	126239428	126239428	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	4	126239428	126239428	C	T	SNP	FAT4	NM_024582.4	human	genbank	58_37c	+1	validated	missense	c.1862	p.S621F	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FLJ39632	642477	genome.wustl.edu	37	14	19891054	19891055	+	RNA	DEL	CT	CT	-	rs147794535	by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	14	19891054	19891055	CT	-	DEL	FLJ39632	XR_015133.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.056:0.047	-	-	-	no_errors
GPR162	27239	genome.wustl.edu	37	12	6939134	6939134	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	12	6939134	6939134	C	T	SNP	LEPREL2	ENST00000290510	human	ensembl	58_37c	+1	known	missense	c.607	p.R203W	0.079	NULL	PatternScan_ER_TARGET,HMMSmart_SM00702	-	no_errors
GPR50	9248	genome.wustl.edu	37	X	150349192	150349192	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	X	150349192	150349192	C	T	SNP	GPR50	NM_004224.3	human	genbank	58_37c	+1	reviewed	silent	c.1137	p.P379	0.000	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_TRYPSIN_HIS,superfamily_Family A G protein-coupled receptor-like	-	no_errors
GUCA2B	2981	genome.wustl.edu	37	1	42621219	42621219	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	1	42621219	42621219	C	T	SNP	GUCA2B	NM_007102.2	human	genbank	58_37c	+1	validated	silent	c.291	p.N97	0.000	HMMPfam_Guanylin,superfamily_Guanylin	HMMPfam_Guanylin,superfamily_Guanylin	-	no_errors
HMCN1	83872	genome.wustl.edu	37	1	186072719	186072719	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	1	186072719	186072719	G	A	SNP	HMCN1	NM_031935.2	human	genbank	58_37c	+1	reviewed	missense	c.10689	p.M3563I	1.000	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	PatternScan_ASX_HYDROXYL,PatternScan_CECROPIN,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00179,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_I-set,HMMPfam_ig,PatternScan_EGF_CA,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
IGDCC3	9543	genome.wustl.edu	37	15	65621396	65621396	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	15	65621396	65621396	C	T	SNP	IGDCC3	NM_004884.3	human	genbank	58_37c	-1	validated	missense	c.2296	p.E766K	0.002	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
KIAA1751	85452	genome.wustl.edu	37	1	1888168	1888168	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	1	1888168	1888168	G	A	SNP	KIAA1751	NM_001080484.1	human	genbank	58_37c	-1	predicted	missense	c.1907	p.T636M	0.003	NULL	NULL	-	no_errors
LASP1	3927	genome.wustl.edu	37	17	37074895	37074895	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	37074895	37074895	A	C	SNP	LASP1	NM_006148.2	human	genbank	58_37c	+1	validated	missense	c.650	p.D217A	1.000	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
LETM1	3954	genome.wustl.edu	37	4	1838164	1838164	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	4	1838164	1838164	A	T	SNP	LETM1	NM_012318.2	human	genbank	58_37c	-1	reviewed	missense	c.730	p.S244T	1.000	HMMPfam_LETM1	HMMPfam_LETM1,PatternScan_EF_HAND_1	-	no_errors
LOC645359	645359	genome.wustl.edu	37	1	13219117	13219117	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	1	13219117	13219117	T	C	SNP	LOC645359	XM_928401.3	human	genbank	58_37c	-1	model	missense	c.509	p.E170G	0.000	superfamily_RNI-like	superfamily_RNI-like	-	no_errors
LOC92973	0	genome.wustl.edu	37	9	35861694	35861694	+	RNA	SNP	G	G	C	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	9	35861694	35861694	G	C	SNP	LOC92973	NR_024006.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
LPA	4018	genome.wustl.edu	37	6	161015051	161015051	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	6	161015051	161015051	G	A	SNP	LPA	NM_005577.2	human	genbank	58_37c	-1	reviewed	nonsense	c.3568	p.Q1190*	0.402	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like	HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,superfamily_Kringle-like,PatternScan_KRINGLE_1,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
MAGEC1	9947	genome.wustl.edu	37	X	140995480	140995480	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	X	140995480	140995480	C	G	SNP	MAGEC1	NM_005462.4	human	genbank	58_37c	+1	reviewed	missense	c.2290	p.Q764E	0.000	NULL	HMMPfam_MAGE	-	no_errors
MELK	9833	genome.wustl.edu	37	9	36651752	36651752	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	9	36651752	36651752	G	A	SNP	MELK	NM_014791.2	human	genbank	58_37c	+1	provisional	missense	c.931	p.D311N	1.000	NULL	HMMPfam_KA1,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF103243	-	no_errors
MLL4	9757	genome.wustl.edu	37	19	36220104	36220104	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	19	36220104	36220104	C	T	SNP	MLL4	NM_014727.1	human	genbank	58_37c	+1	reviewed	silent	c.4824	p.H1608	0.142	NULL	HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
MUC12	10071	genome.wustl.edu	37	7	100661916	100661916	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	7	100661916	100661916	G	A	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	silent	c.16436	p.*5479	0.002	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
ODF2	4957	genome.wustl.edu	37	9	131256860	131256860	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	9	131256860	131256860	G	A	SNP	ODF2	NM_002540.3	human	genbank	58_37c	+1	reviewed	silent	c.1752	p.A584	0.657	NULL	NULL	-	no_errors
PGAP2	27315	genome.wustl.edu	37	11	3819319	3819319	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	11	3819319	3819319	C	T	SNP	PGAP2	NR_027017.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
PLCG1	5335	genome.wustl.edu	37	20	39796490	39796490	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	20	39796490	39796490	A	G	SNP	PLCG1	NM_002660.2	human	genbank	58_37c	+1	reviewed	splice_site	c.2302-2	e20-2	1.000	-	-	-	no_errors
RAD54L	8438	genome.wustl.edu	37	1	46738424	46738424	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	1	46738424	46738424	T	C	SNP	RAD54L	NM_001142548.1	human	genbank	58_37c	+1	reviewed	missense	c.1325	p.M442T	1.000	HMMPfam_SNF2_N,superfamily_SSF52540	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
RASGRP2	10235	genome.wustl.edu	37	11	64497587	64497587	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	11	64497587	64497587	C	T	SNP	RASGRP2	NM_001098670.1	human	genbank	58_37c	-1	reviewed	missense	c.1492	p.V498I	1.000	superfamily_Cysteine-rich domain	HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_RasGEF,HMMSmart_SM00147,HMMSmart_SM00054,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Ras GEF,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Cysteine-rich domain	-	no_errors
REV3L	5980	genome.wustl.edu	37	6	111697571	111697571	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	6	111697571	111697571	C	T	SNP	REV3L	NM_002912.3	human	genbank	58_37c	-1	validated	missense	c.1987	p.E663K	1.000	superfamily_Ribonuclease H-like	HMMPfam_DNA_pol_B_exo,HMMPfam_DNA_pol_B,HMMSmart_SM00486,superfamily_Ribonuclease H-like,PatternScan_DNA_POLYMERASE_B,superfamily_DNA/RNA polymerases	-	no_errors
SCNN1B	6338	genome.wustl.edu	37	16	23366809	23366809	+	Missense_Mutation	SNP	C	C	T	rs72654326	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	16	23366809	23366809	C	T	SNP	SCNN1B	NM_000336.2	human	genbank	58_37c	+1	reviewed	missense	c.775	p.R259W	1.000	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-	no_errors
SEC24C	9632	genome.wustl.edu	37	10	75527697	75527697	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	10	75527697	75527697	G	A	SNP	SEC24C	NM_004922.2	human	genbank	58_37c	+1	reviewed	missense	c.2113	p.D705N	1.000	HMMPfam_Sec23_trunk,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24	HMMPfam_zf-Sec23_Sec24,superfamily_Zn-finger domain of Sec23/24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,PatternScan_GLYCOSYL_HYDROL_F1_1,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24,superfamily_C-terminal gelsolin-like domain of Sec23/24	-	no_errors
SLC25A18	83733	genome.wustl.edu	37	22	18065387	18065387	+	Silent	SNP	C	C	T	rs147849781	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	22	18065387	18065387	C	T	SNP	SLC25A18	NM_031481.1	human	genbank	58_37c	+1	provisional	silent	c.258	p.N86	0.993	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
STAU1	6780	genome.wustl.edu	37	20	47736592	47736592	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	20	47736592	47736592	T	G	SNP	STAU1	NM_017453.2	human	genbank	58_37c	-1	reviewed	missense	c.1040	p.N347T	1.000	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like	-	no_errors
TBCD	6904	genome.wustl.edu	37	17	80878479	80878479	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	80878479	80878479	G	A	SNP	TBCD	NM_005993.4	human	genbank	58_37c	+1	reviewed	missense	c.2086	p.G696S	0.984	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
TMCO6	55374	genome.wustl.edu	37	5	140023514	140023514	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	5	140023514	140023514	G	A	SNP	TMCO6	NM_018502.3	human	genbank	58_37c	+1	provisional	silent	c.1068	p.L356	0.983	HMMSmart_SM00185,superfamily_ARM repeat	HMMSmart_SM00185,superfamily_ARM repeat	-	no_errors
TWSG1	57045	genome.wustl.edu	37	18	9396368	9396368	+	Missense_Mutation	SNP	G	G	A	rs140736771	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	18	9396368	9396368	G	A	SNP	TWSG1	NM_020648.5	human	genbank	58_37c	+1	validated	missense	c.314	p.R105Q	1.000	HMMPfam_Tsg	HMMPfam_Tsg	-	no_errors
UBR3	130507	genome.wustl.edu	37	2	170897490	170897490	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	2	170897490	170897490	G	A	SNP	UBR3	NM_172070.3	human	genbank	58_37c	+1	validated	missense	c.4655	p.R1552H	0.956	NULL	HMMPfam_zf-UBR,HMMSmart_SM00396,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
