Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ARHGAP27	201176	genome.wustl.edu	37	17	43473379	43473379	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	17	43473379	43473379	A	G	SNP	ARHGAP27	NM_199282.2	human	genbank	58_37c	-1	validated	missense	c.1333	p.S445P	0.933	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_WW,HMMSmart_SM00456,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like	-	no_errors
CARD11	84433	genome.wustl.edu	37	7	2987388	2987388	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	7	2987388	2987388	G	A	SNP	CARD11	NM_032415.3	human	genbank	58_37c	-1	validated	missense	c.41	p.T14M	0.982	NULL	HMMPfam_CARD,HMMSmart_PDZ,superfamily_PDZ,superfamily_DEATH_like,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52540	-	no_errors
CHRM4	1132	genome.wustl.edu	37	11	46406905	46406905	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	11	46406905	46406905	C	T	SNP	CHRM4	NM_000741.2	human	genbank	58_37c	-1	reviewed	silent	c.1203	p.T401	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
CYGB	114757	genome.wustl.edu	37	17	74527737	74527737	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	17	74527737	74527737	G	A	SNP	CYGB	NM_134268.3	human	genbank	58_37c	-1	validated	silent	c.180	p.F60	1.000	HMMPfam_Globin,superfamily_Globin-like	HMMPfam_Globin,superfamily_Globin-like	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16950164	16950164	+	RNA	SNP	C	C	A	rs80271826	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	1	16950164	16950164	C	A	SNP	ENSG00000245549	ENST00000501442	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000246292	0	genome.wustl.edu	37	5	140699881	140699881	+	RNA	SNP	G	G	C	rs143483447	by1000genomes	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	5	140699881	140699881	G	C	SNP	TAF7	NM_005642.2	human	genbank	58_37c	-1	reviewed	5_prime_untranslated_region	c.-270	NULL	0.786	-	-	-	no_errors
ENSG00000246643	0	genome.wustl.edu	37	21	46221567	46221567	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	21	46221567	46221567	G	A	SNP	UBE2G2	NM_003343.4	human	genbank	58_37c	-1	reviewed	intronic	c.43+54	e1+54	0.000	-	-	-	no_errors
ERCC4	2072	genome.wustl.edu	37	16	14029554	14029554	+	Missense_Mutation	SNP	C	C	T	rs147105770	byFrequency	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	16	14029554	14029554	C	T	SNP	ERCC4	NM_005236.2	human	genbank	58_37c	+1	reviewed	missense	c.1765	p.R589W	1.000	NULL	HMMPfam_ERCC4,superfamily_Restrict_endonuc_II-like_core	-	no_errors
FAM117B	150864	genome.wustl.edu	37	2	203591033	203591036	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	AAAG	AAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	2	203591033	203591036	AAAG	-	DEL	FAM117B	NM_173511.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.175_178	p.E60fs	1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors
FAM53C	51307	genome.wustl.edu	37	5	137681156	137681162	+	Frame_Shift_Del	DEL	GGCGACC	GGCGACC	-	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	GGCGACC	GGCGACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	5	137681156	137681162	GGCGACC	-	DEL	FAM53C	NM_001135647.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.779_785	p.W260fs	1.000:1.000:1.000:1.000:1.000:1.000:0.793	NULL	NULL	-	no_errors
GRM3	2913	genome.wustl.edu	37	7	86469059	86469059	+	Silent	SNP	C	C	T	rs138568176	byCluster;by1000genomes	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	7	86469059	86469059	C	T	SNP	GRM3	NM_000840.2	human	genbank	58_37c	+1	reviewed	silent	c.2229	p.Y743	0.516	HMMPfam_7tm_3	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_Periplasmic binding protein-like I	-	no_errors
HELB	92797	genome.wustl.edu	37	12	66717817	66717817	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	12	66717817	66717817	G	T	SNP	HELB	NM_033647.2	human	genbank	58_37c	+1	reviewed	missense	c.2352	p.R784S	0.991	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ITPR3	3710	genome.wustl.edu	37	6	33655053	33655053	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	6	33655053	33655053	G	A	SNP	ITPR3	NM_002224.2	human	genbank	58_37c	+1	validated	silent	c.6126	p.S2042	0.003	NULL	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR,HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_MIR,superfamily_SSF100909	-	no_errors
KIAA1324	57535	genome.wustl.edu	37	1	109727733	109727733	+	Missense_Mutation	SNP	C	C	T	rs139330177	byFrequency	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	1	109727733	109727733	C	T	SNP	KIAA1324	NM_020775.3	human	genbank	58_37c	+1	validated	missense	c.1019	p.T340M	1.000	superfamily_Growth factor receptor domain	superfamily_Mannose 6-phosphate receptor domain,superfamily_Growth factor receptor domain	-	no_errors
MUC6	4588	genome.wustl.edu	37	11	1019367	1019368	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	11	1019367	1019368	GC	-	DEL	MUC6	NM_005961.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.3938_3937	p.A1313fs	0.002:0.000	NULL	HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,HMMSmart_SM00215,HMMPfam_C8,HMMPfam_TIL	-	no_errors
NCAM2	4685	genome.wustl.edu	37	21	22696711	22696711	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	21	22696711	22696711	G	A	SNP	NCAM2	NM_004540.2	human	genbank	58_37c	+1	reviewed	missense	c.628	p.A210T	0.999	superfamily_SSF48726	HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
PCNX	22990	genome.wustl.edu	37	14	71543011	71543011	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	14	71543011	71543011	G	A	SNP	PCNX	NM_014982.2	human	genbank	58_37c	+1	validated	missense	c.5212	p.V1738M	1.000	NULL	HMMPfam_Pecanex_C	-	no_errors
POLR3C	10623	genome.wustl.edu	37	1	145608467	145608467	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	1	145608467	145608467	C	T	SNP	POLR3C	NM_006468.6	human	genbank	58_37c	-1	provisional	missense	c.340	p.G114S	1.000	NULL	HMMPfam_RNA_pol_Rpc82,HMMPfam_HTH_9	-	no_errors
SEMA3E	9723	genome.wustl.edu	37	7	82997122	82997122	+	Missense_Mutation	SNP	G	G	A	rs121918341	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	7	82997122	82997122	G	A	SNP	SEMA3E	NM_012431.2	human	genbank	58_37c	-1	reviewed	missense	c.2108	p.S703L	0.044	NULL	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMSmart_IG,HMMSmart_PSI,HMMPfam_ig,superfamily_Plexin-like_fold,superfamily_SSF48726	-	no_errors
ST18	9705	genome.wustl.edu	37	8	53038615	53038615	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	8	53038615	53038615	C	T	SNP	ST18	NM_014682.2	human	genbank	58_37c	-1	validated	missense	c.2752	p.G918R	0.993	NULL	HMMPfam_zf-C2HC,HMMPfam_MYT1,superfamily_SSF103637	-	no_errors
TFDP1	7027	genome.wustl.edu	37	13	114292199	114292199	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	13	114292199	114292199	G	T	SNP	TFDP1	NM_007111.4	human	genbank	58_37c	+1	reviewed	missense	c.1073	p.R358M	1.000	NULL	HMMPfam_E2F_TDP,HMMPfam_DP,superfamily_SSF46785	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	17	7574003	7574003	G	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.1024	p.R342*	0.307	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
VANGL2	57216	genome.wustl.edu	37	1	160389104	160389104	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	1	160389104	160389104	C	T	SNP	VANGL2	NM_020335.1	human	genbank	58_37c	+1	validated	missense	c.505	p.R169C	1.000	HMMPfam_Strabismus	HMMPfam_Strabismus	-	no_errors
ZIC4	84107	genome.wustl.edu	37	3	147108957	147108957	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	3	147108957	147108957	C	T	SNP	ZIC4	ENST00000383075	human	ensembl	58_37c	-1	known	silent	c.765	p.S255	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
