Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
C6orf132	647024	genome.wustl.edu	37	6	42072710	42072715	+	In_Frame_Del	DEL	CTCCTC	CTCCTC	-	rs150599390	by1000genomes	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	CTCCTC	CTCCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	6	42072710	42072715	CTCCTC	-	DEL	C6orf132	ENST00000341865	human	ensembl	58_37c	-1	known	in_frame_del	c.2940_2935	p.EE979in_frame_del	0.995:0.998:0.998:0.989:0.987:0.736	NULL	NULL	-	no_errors
CATSPER2	117155	genome.wustl.edu	37	15	43939311	43939311	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	15	43939311	43939311	G	C	SNP	CATSPER2	NM_172095.1	human	genbank	58_37c	-1	reviewed	missense	c.325	p.L109V	0.977	superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	-	no_errors
COQ9	57017	genome.wustl.edu	37	16	57493549	57493549	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	16	57493549	57493549	T	-	DEL	COQ9	NM_020312.1	human	genbank	58_37c	+1	provisional	frame_shift_del	c.784	p.S262fs	1.000	HMMPfam_COQ9	HMMPfam_COQ9	-	no_errors
CP	1356	genome.wustl.edu	37	3	148930395	148930395	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	3	148930395	148930395	G	A	SNP	CP	NM_000096.3	human	genbank	58_37c	-1	reviewed	silent	c.237	p.T79	0.298	superfamily_Cupredoxins	HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,PatternScan_MULTICOPPER_OXIDASE2,superfamily_Cupredoxins,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3	-	no_errors
ELAC2	60528	genome.wustl.edu	37	17	12901771	12901771	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	17	12901771	12901771	G	A	SNP	ELAC2	NM_018127.6	human	genbank	58_37c	-1	reviewed	missense	c.1478	p.P493L	0.999	superfamily_Metallo-hydrolase/oxidoreductase	HMMPfam_Lactamase_B,superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
ELK3	2004	genome.wustl.edu	37	12	96653588	96653588	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	12	96653588	96653588	C	A	SNP	ELK3	NM_005230.2	human	genbank	58_37c	+1	reviewed	missense	c.1082	p.P361Q	1.000	NULL	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
ENSG00000228775	0	genome.wustl.edu	37	7	141427142	141427142	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	7	141427142	141427142	A	T	SNP	WEE2	NM_001105558.1	human	genbank	58_37c	+1	validated	silent	c.1431	p.A477	0.315	superfamily_Kinase_like,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
ENSG00000246262	0	genome.wustl.edu	37	19	21909348	21909352	+	RNA	DEL	TTATC	TTATC	-	rs71178760	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	TTATC	TTATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	19	21909348	21909352	TTATC	-	DEL	ZNF100	NM_173531.3	human	genbank	58_37c	-1	validated	3_prime_untranslated_region	c.*137	NULL	0.623:0.581:0.553:0.622:0.624	-	-	-	no_errors
FSTL4	23105	genome.wustl.edu	37	5	132585181	132585181	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	5	132585181	132585181	A	T	SNP	FSTL4	NM_015082.1	human	genbank	58_37c	-1	validated	missense	c.815	p.V272D	0.994	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMPfam_Kazal_1,HMMSmart_SM00280,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_I-set,HMMPfam_ig,PatternScan_EF_HAND_1,superfamily_Kazal-type serine protease inhibitors,superfamily_EF-hand,superfamily_Immunoglobulin	-	no_errors
KCNK4	50801	genome.wustl.edu	37	11	64064601	64064601	+	Missense_Mutation	SNP	T	T	A	rs145730818	byFrequency	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	11	64064601	64064601	T	A	SNP	KCNK4	NM_033310.2	human	genbank	58_37c	+1	reviewed	missense	c.324	p.N108K	0.981	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels	-	no_errors
LMO7	4008	genome.wustl.edu	37	13	76370783	76370783	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	13	76370783	76370783	A	G	SNP	LMO7	NM_005358.5	human	genbank	58_37c	+1	reviewed	silent	c.516	p.T172	0.317	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CH,HMMSmart_CH,HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_Calponin-homology	-	no_errors
LRCH1	23143	genome.wustl.edu	37	13	47279264	47279264	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	13	47279264	47279264	G	A	SNP	LRCH1	NM_015116.2	human	genbank	58_37c	+1	reviewed	missense	c.1462	p.A488T	1.000	NULL	HMMPfam_LRR_1,HMMPfam_CH,HMMSmart_SM00033,PatternScan_PTS_HPR_SER,HMMSmart_SM00369,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00364,superfamily_L domain-like	-	no_errors
MMRN2	79812	genome.wustl.edu	37	10	88703812	88703812	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	10	88703812	88703812	G	A	SNP	MMRN2	NM_024756.2	human	genbank	58_37c	-1	validated	silent	c.729	p.P243	1.000	NULL	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_EMI	-	no_errors
MYH7B	57644	genome.wustl.edu	37	20	33568852	33568852	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	20	33568852	33568852	C	T	SNP	MYH7B	NM_020884.3	human	genbank	58_37c	+1	reviewed	silent	c.642	p.S214	0.998	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-binding arm,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PDE2A	5138	genome.wustl.edu	37	11	72290428	72290428	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	11	72290428	72290428	C	G	SNP	PDE2A	NM_002599.3	human	genbank	58_37c	-1	validated	splice_site	c.2257-1	e27-1	1.000	-	-	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1624	p.E542K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RFPL1S	10740	genome.wustl.edu	37	22	29837198	29837199	+	RNA	INS	-	-	A	rs66661308	byCluster	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	22	29837198	29837199	-	A	INS	RFPL1S	NR_002727.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.015:0.012	-	-	-	no_errors
SCN2A	6326	genome.wustl.edu	37	2	166245338	166245338	+	Silent	SNP	C	C	T	rs186157680	by1000genomes	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	2	166245338	166245338	C	T	SNP	SCN2A	NM_001040142.1	human	genbank	58_37c	+1	reviewed	silent	c.5022	p.Y1674	0.954	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
TMEM120B	0	genome.wustl.edu	37	12	122212588	122212588	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	12	122212588	122212588	G	A	SNP	TMEM120B	NM_001080825.2	human	genbank	58_37c	+1	validated	missense	c.797	p.R266Q	1.000	HMMPfam_TMPIT	HMMPfam_TMPIT	-	no_errors
UBAP2L	9898	genome.wustl.edu	37	1	154233514	154233514	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	1	154233514	154233514	A	C	SNP	UBAP2L	NM_014847.3	human	genbank	58_37c	+1	validated	missense	c.2725	p.T909P	1.000	NULL	HMMPfam_UBA,HMMSmart_SM00165	-	no_errors
ZKSCAN1	7586	genome.wustl.edu	37	7	99631717	99631717	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	7	99631717	99631717	C	G	SNP	ZKSCAN1	NM_003439.1	human	genbank	58_37c	+1	validated	missense	c.1589	p.S530C	0.227	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
