Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AKAP6	9472	genome.wustl.edu	37	14	33290671	33290671	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	14	33290671	33290671	G	C	SNP	AKAP6	NM_004274.4	human	genbank	58_37c	+1	reviewed	missense	c.3652	p.E1218Q	1.000	NULL	PatternScan_PFKB_KINASES_2,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
ALPP	250	genome.wustl.edu	37	2	233243529	233243531	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	2	233243529	233243531	TGC	-	DEL	ALPP	NM_001632.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.17_19	p.L10in_frame_del	0.645:0.641:0.627	NULL	HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core,PatternScan_ALKALINE_PHOSPHATASE	-	no_errors
ASB16	92591	genome.wustl.edu	37	17	42255078	42255078	+	Silent	SNP	A	A	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	42255078	42255078	A	T	SNP	ASB16	NM_080863.4	human	genbank	58_37c	+1	reviewed	silent	c.1164	p.P388	0.454	superfamily_Ankyrin repeat	HMMPfam_SOCS_box,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ATRX	546	genome.wustl.edu	37	X	76940008	76940008	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	X	76940008	76940008	T	C	SNP	ATRX	NM_000489.3	human	genbank	58_37c	-1	reviewed	missense	c.740	p.N247S	1.000	superfamily_FYVE/PHD zinc finger	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
C3orf63	23272	genome.wustl.edu	37	3	56716828	56716828	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	56716828	56716828	G	A	SNP	C3orf63	NM_001112736.1	human	genbank	58_37c	-1	validated	silent	c.207	p.L69	0.389	NULL	NULL	-	no_errors
CADPS	8618	genome.wustl.edu	37	3	62535703	62535703	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	62535703	62535703	A	C	SNP	CADPS	NM_003716.3	human	genbank	58_37c	-1	reviewed	missense	c.1841	p.L614R	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_C2,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041,superfamily_PH domain-like	-	no_errors
CEP97	79598	genome.wustl.edu	37	3	101477254	101477254	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	101477254	101477254	G	A	SNP	CEP97	NM_024548.2	human	genbank	58_37c	+1	provisional	missense	c.1804	p.D602N	0.982	NULL	HMMPfam_IQ,HMMPfam_LRR_1,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
CHRD	8646	genome.wustl.edu	37	3	184104637	184104637	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	184104637	184104637	G	A	SNP	CHRD	NM_003741.2	human	genbank	58_37c	+1	reviewed	missense	c.2201	p.R734Q	1.000	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_CHRD,HMMSmart_SM00754	-	no_errors
CPNE3	8895	genome.wustl.edu	37	8	87568396	87568396	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	8	87568396	87568396	A	G	SNP	CPNE3	NM_003909.3	human	genbank	58_37c	+1	reviewed	missense	c.1321	p.I441V	0.998	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300	HMMPfam_C2,HMMSmart_C2,HMMSmart_VWA,superfamily_C2_CaLB,HMMPfam_Copine,superfamily_SSF53300	-	no_errors
CPNE8	144402	genome.wustl.edu	37	12	39087515	39087515	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	12	39087515	39087515	G	C	SNP	CPNE8	NM_153634.2	human	genbank	58_37c	-1	reviewed	missense	c.1087	p.L363V	0.998	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300	HMMPfam_C2,HMMSmart_C2,HMMSmart_VWA,superfamily_C2_CaLB,HMMPfam_Copine,superfamily_SSF53300	-	no_errors
CYTH1	9267	genome.wustl.edu	37	17	76676295	76676297	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	76676295	76676297	CTT	-	DEL	CYTH1	NM_004762.2	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1095_1093	p.K365in_frame_del	1.000:1.000:1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
EPB41L4A	64097	genome.wustl.edu	37	5	111595650	111595650	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	5	111595650	111595650	T	-	DEL	EPB41L4A	NM_022140.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.669	p.G224fs	0.997	HMMPfam_FERM_C,superfamily_PH domain-like	HMMPfam_FA,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like	-	no_errors
FGFR1	2260	genome.wustl.edu	37	8	38271457	38271457	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	8	38271457	38271457	G	A	SNP	FGFR1	NM_023110.2	human	genbank	58_37c	-1	reviewed	silent	c.2271	p.I757	0.027	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin	-	no_errors
FLNB	2317	genome.wustl.edu	37	3	58134535	58134535	+	Missense_Mutation	SNP	G	G	A	rs137885421	byCluster;byFrequency;by1000genomes	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	58134535	58134535	G	A	SNP	FLNB	NM_001457.3	human	genbank	58_37c	+1	reviewed	missense	c.6047	p.R2016Q	0.998	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin	HMMSmart_IG_FLMN,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,superfamily_Ig_E-set,superfamily_Calponin-homology,HMMPfam_Filamin	-	no_errors
GGNBP2	79893	genome.wustl.edu	37	17	34937779	34937779	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	34937779	34937779	C	T	SNP	GGNBP2	NM_024835.2	human	genbank	58_37c	+1	validated	silent	c.1026	p.T342	1.000	NULL	NULL	-	no_errors
GOLGA4	2803	genome.wustl.edu	37	3	37356982	37356982	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	37356982	37356982	G	A	SNP	GOLGA4	NM_002078.4	human	genbank	58_37c	+1	reviewed	missense	c.1306	p.E436K	1.000	NULL	HMMPfam_GRIP,HMMSmart_SM00755,PatternScan_PHOSPHOPANTETHEINE,superfamily_Prefoldin,superfamily_GRIP domain	-	no_errors
HFE	3077	genome.wustl.edu	37	6	26092916	26092916	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	6	26092916	26092916	C	T	SNP	HFE	NM_000410.3	human	genbank	58_37c	+1	reviewed	missense	c.620	p.P207L	0.395	superfamily_Immunoglobulin	HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
HP1BP3	50809	genome.wustl.edu	37	1	21097424	21097424	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	21097424	21097424	T	A	SNP	HP1BP3	NM_016287.3	human	genbank	58_37c	-1	validated	missense	c.653	p.Q218L	1.000	"HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
ITGA10	8515	genome.wustl.edu	37	1	145539030	145539030	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	145539030	145539030	C	T	SNP	ITGA10	NM_003637.3	human	genbank	58_37c	+1	reviewed	silent	c.2970	p.L990	0.992	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,superfamily_vWA-like,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain	-	no_errors
LOC100287512	0	genome.wustl.edu	37	3	15183060	15183060	+	RNA	SNP	T	T	C	rs71308132	byCluster;byFrequency;by1000genomes	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	15183060	15183060	T	C	SNP	LOC100287512	XR_078279.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC100288413	0	genome.wustl.edu	37	4	53610409	53610409	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	4	53610409	53610409	C	G	SNP	LOC100288413	XM_002342451.1	human	genbank	58_37c	-1	model	missense	c.1279	p.D427H	0.000	NULL	NULL	-	no_errors
LOC643446	643446	genome.wustl.edu	37	4	11374478	11374478	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	4	11374478	11374478	C	T	SNP	LOC643446	XM_001130637.2	human	genbank	58_37c	+1	model	missense	c.880	p.R294C	0.968	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
LOC646698	646698	genome.wustl.edu	37	19	56755692	56755692	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	19	56755692	56755692	T	A	SNP	LOC646698	XM_001725568.1	human	genbank	58_37c	+1	model	missense	c.272	p.I91N	0.024	HMMPfam_SCAN,HMMSmart_SM00431	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LRP4	4038	genome.wustl.edu	37	11	46896381	46896381	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	11	46896381	46896381	T	C	SNP	LRP4	NM_002334.3	human	genbank	58_37c	-1	reviewed	missense	c.4199	p.Y1400C	1.000	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
LRRTM1	347730	genome.wustl.edu	37	2	80530819	80530819	+	Silent	SNP	C	C	A	rs186584392	by1000genomes	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	2	80530819	80530819	C	A	SNP	LRRTM1	NM_178839.4	human	genbank	58_37c	-1	validated	silent	c.126	p.L42	1.000	HMMSmart_LRRNT,superfamily_SSF52058	HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
MYO15A	51168	genome.wustl.edu	37	17	18065989	18065989	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	18065989	18065989	T	C	SNP	MYO15A	NM_016239.3	human	genbank	58_37c	+1	reviewed	missense	c.9608	p.M3203T	1.000	HMMPfam_MyTH4,HMMSmart_SM00139	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_MyTH4,HMMSmart_SM00139,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_SH3_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NLRP2	55655	genome.wustl.edu	37	19	55494011	55494011	+	Silent	SNP	C	C	T	rs139643111	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	19	55494011	55494011	C	T	SNP	NLRP2	NM_017852.3	human	genbank	58_37c	+1	validated	silent	c.945	p.P315	0.000	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PCDHA2	56146	genome.wustl.edu	37	5	140176351	140176351	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	5	140176351	140176351	C	T	SNP	PCDHA2	NM_018905.2	human	genbank	58_37c	+1	reviewed	missense	c.1802	p.S601L	0.121	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PIK3R1	5295	genome.wustl.edu	37	5	67591111	67591112	+	In_Frame_Ins	INS	-	-	GAC	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	5	67591111	67591112	-	GAC	INS	PIK3R1	NM_181523.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.1704_1705	p.569in_frame_insD	0.152:1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_GTPase activation domain GAP,superfamily_SH2 domain	-	no_errors
PLCD4	84812	genome.wustl.edu	37	2	219492900	219492900	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	2	219492900	219492900	C	T	SNP	PLCD4	NM_032726.2	human	genbank	58_37c	+1	provisional	silent	c.921	p.T307	0.990	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00054,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_PH domain-like	-	no_errors
PPP4R2	151987	genome.wustl.edu	37	3	73096423	73096423	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	73096423	73096423	G	C	SNP	PPP4R2	NM_174907.2	human	genbank	58_37c	+1	provisional	missense	c.203	p.R68T	1.000	HMMPfam_PPP4R2	HMMPfam_PPP4R2	-	no_errors
PROM2	150696	genome.wustl.edu	37	2	95944749	95944749	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	2	95944749	95944749	G	A	SNP	PROM2	NM_144707.2	human	genbank	58_37c	+1	reviewed	silent	c.1131	p.V377	0.387	HMMPfam_Prominin	HMMPfam_Prominin,PatternScan_PA2_HIS	-	no_errors
RAP1GAP	5909	genome.wustl.edu	37	1	21928254	21928254	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	21928254	21928254	G	A	SNP	RAP1GAP	NM_001145658.1	human	genbank	58_37c	-1	validated	silent	c.1767	p.S589	0.998	NULL	HMMPfam_Rap_GAP,HMMPfam_GoLoco,HMMSmart_SM00390,superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
ROS1	6098	genome.wustl.edu	37	6	117710620	117710620	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	6	117710620	117710620	G	A	SNP	ROS1	NM_002944.2	human	genbank	58_37c	-1	reviewed	missense	c.1652	p.S551F	0.014	superfamily_SSF63825	HMMSmart_LY,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF63825	-	no_errors
SEMA6A	57556	genome.wustl.edu	37	5	115823840	115823842	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	5	115823840	115823842	GAA	-	DEL	SEMA6A	NM_020796.3	human	genbank	58_37c	-1	validated	in_frame_del	c.708_706	p.F236in_frame_del	1.000:1.000:1.000	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_errors
SETD1A	9739	genome.wustl.edu	37	16	30977152	30977152	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	16	30977152	30977152	T	A	SNP	SETD1A	NM_014712.1	human	genbank	58_37c	+1	provisional	silent	c.1950	p.P650	1.000	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET,superfamily_SSF54928,superfamily_SSF82199	-	no_errors
SLC22A25	387601	genome.wustl.edu	37	11	62996780	62996780	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	11	62996780	62996780	G	A	SNP	SLC22A25	NM_199352.3	human	genbank	58_37c	-1	validated	silent	c.345	p.P115	1.000	NULL	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLC27A3	11000	genome.wustl.edu	37	1	153747796	153747796	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	153747796	153747796	T	C	SNP	SLC27A3	ENST00000271857	human	ensembl	58_37c	+1	known	silent	c.207	p.A69	0.478	NULL	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like	-	no_errors
SOX9	6662	genome.wustl.edu	37	17	70117908	70117908	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	70117908	70117908	C	T	SNP	SOX9	NM_000346.3	human	genbank	58_37c	+1	reviewed	nonsense	c.376	p.Q126*	1.000	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box	-	no_errors
SPTA1	6708	genome.wustl.edu	37	1	158644209	158644209	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	158644209	158644209	G	A	SNP	SPTA1	NM_003126.2	human	genbank	58_37c	-1	reviewed	silent	c.1260	p.D420	0.999	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
SYS1	90196	genome.wustl.edu	37	20	43992225	43992225	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	20	43992225	43992225	G	T	SNP	SYS1	NM_033542.2	human	genbank	58_37c	+1	validated	missense	c.54	p.Q18H	1.000	HMMPfam_SYS1	HMMPfam_SYS1	-	no_errors
TIMM17A	10440	genome.wustl.edu	37	1	201924671	201924671	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	201924671	201924671	G	C	SNP	TIMM17A	NM_006335.2	human	genbank	58_37c	+1	validated	missense	c.17	p.R6P	0.223	HMMPfam_Tim17	HMMPfam_Tim17	-	no_errors
TOPBP1	11073	genome.wustl.edu	37	3	133337228	133337228	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	133337228	133337228	C	G	SNP	TOPBP1	NM_007027.3	human	genbank	58_37c	-1	reviewed	missense	c.3421	p.E1141Q	1.000	NULL	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,superfamily_Uteroglobin-like	-	no_errors
TTLL7	79739	genome.wustl.edu	37	1	84408343	84408343	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	84408343	84408343	C	T	SNP	TTLL7	NM_024686.4	human	genbank	58_37c	-1	validated	missense	c.526	p.G176S	1.000	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
TYR	7299	genome.wustl.edu	37	11	88911241	88911241	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	11	88911241	88911241	C	G	SNP	TYR	NM_000372.4	human	genbank	58_37c	+1	reviewed	missense	c.120	p.S40R	0.000	NULL	PatternScan_EGF_LAM_1,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,PatternScan_TYROSINASE_2,superfamily_Di-copper centre-containing domain,PatternScan_EGF_1	-	no_errors
USP27X	389856	genome.wustl.edu	37	X	49645295	49645295	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	X	49645295	49645295	C	T	SNP	USP27X	NM_001145073.1	human	genbank	58_37c	+1	provisional	silent	c.385	p.L129	0.996	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
VPS26B	112936	genome.wustl.edu	37	11	134114938	134114938	+	Silent	SNP	G	G	C	rs149896543	by1000genomes	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	11	134114938	134114938	G	C	SNP	VPS26B	NM_052875.3	human	genbank	58_37c	+1	validated	silent	c.828	p.L276	1.000	HMMPfam_Vps26	HMMPfam_Vps26	-	no_errors
VWDE	221806	genome.wustl.edu	37	7	12401033	12401033	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	7	12401033	12401033	C	A	SNP	VWDE	NM_001135924.1	human	genbank	58_37c	-1	provisional	missense	c.3013	p.D1005Y	0.128	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin	-	no_errors
ZNF415	55786	genome.wustl.edu	37	19	53611669	53611669	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	19	53611669	53611669	T	C	SNP	ZNF415	NM_018355.2	human	genbank	58_37c	-1	validated	silent	c.1629	p.Q543	0.007	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF569	148266	genome.wustl.edu	37	19	37904255	37904255	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	19	37904255	37904255	C	G	SNP	ZNF569	NM_152484.2	human	genbank	58_37c	-1	validated	missense	c.1305	p.E435D	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF90	7643	genome.wustl.edu	37	19	20229605	20229605	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	19	20229605	20229605	A	G	SNP	ZNF90	NM_007138.1	human	genbank	58_37c	+1	validated	missense	c.1242	p.I414M	0.002	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
