Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MTOR	2475	genome.wustl.edu	37	1	11272451	11272451	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004958.3	-1	reviewed	p.V1160G	0.998	164	0%	158	22.2%	8	0%	benign(0.312)	deleterious(0)	deleterious(0.542)	superfamily_ARM-type_fold
VPS13D	55187	genome.wustl.edu	37	1	12337745	12337745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015378.2	+1	reviewed	p.S1367L	0.002	261	0%	241	12.9%	0	-	benign(0.001)	tolerated(0.3)	neutral(0.029)	NULL
IL28RA	163702	genome.wustl.edu	37	1	24485984	24485984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_170743.2	-1	reviewed	p.C217Y	0.998	219	0%	163	17.2%	1	100%	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	superfamily_Fibronectin type III
SRRM1	10250	genome.wustl.edu	37	1	24989289	24989289	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005839.3	+1	validated	p.S541C	0.998	313	0%	331	38.4%	75	46.6%	unknown(0)	deleterious(0.03)	-	NULL
WDTC1	23038	genome.wustl.edu	37	1	27623546	27623546	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015023.3	+1	validated	p.Q318	1.000	82	0%	50	40%	19	89.4%	-	-	-	superfamily_WD40 repeat-like
CLSPN	63967	genome.wustl.edu	37	1	36226214	36226214	+	Silent	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_022111.2	-1	reviewed	p.G436	0.000	191	0%	222	33.3%	0	-	-	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39913369	39913369	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_033044.2	+1	reviewed	p.F5032L	1.000	308	0%	276	43.1%	8	37.5%	possibly_damaging(0.849)	tolerated(0.2)	neutral(0.375)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
PABPC4	8761	genome.wustl.edu	37	1	40030780	40030780	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001135653.1	-1	reviewed	p.Q415*	1.000	54	0%	38	15.8%	143	2%	-	-	-	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42047354	42047354	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_024503.3	-1	validated	p.E1039Q	1.000	97	0%	53	26.4%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SZT2	23334	genome.wustl.edu	37	1	43893716	43893716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015284.2	+1	predicted	p.M383I	1.000	120	0%	73	20.5%	4	0%	benign(0.147)	tolerated(0.74)	neutral(0.014)	NULL
PTPRF	5792	genome.wustl.edu	37	1	44084388	44084388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002840.3	+1	reviewed	p.T1487A	1.000	108	0%	88	11.4%	246	11.7%	possibly_damaging(0.939)	tolerated(0.34)	neutral(0.408)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
ZSWIM5	57643	genome.wustl.edu	37	1	45524299	45524299	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020883.1	-1	validated	p.Q412*	1.000	293	0%	294	13.6%	0	-	-	-	-	NULL
ATPAF1	64756	genome.wustl.edu	37	1	47118297	47118297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_022745.3	-1	reviewed	p.E182K	0.987	71	0%	95	33.7%	4	75%	benign(0.002)	tolerated(0.42)	neutral(0.014)	HMMPfam_ATP11
ZCCHC11	23318	genome.wustl.edu	37	1	52991588	52991588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001009881.1	-1	validated	p.T122I	0.273	403	0%	318	15.4%	0	-	benign(0.013)	deleterious(0.03)	neutral(0.365)	NULL
HEATR8	374977	genome.wustl.edu	37	1	55119398	55119398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001039464.2	+1	validated	p.T267A	0.000	316	0%	274	13.9%	3	33.3%	benign(0.004)	tolerated(0.47)	neutral(0.011)	NULL
USP24	23358	genome.wustl.edu	37	1	55590188	55590188	+	Silent	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015306.2	-1	validated	p.S1198	0.990	293	0%	272	15.8%	0	-	-	-	-	NULL
WLS	79971	genome.wustl.edu	37	1	68697917	68697917	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001002292.2	-1	validated	p.L22	0.451	391	0%	348	35.6%	23	56.5%	-	-	-	NULL
ELTD1	64123	genome.wustl.edu	37	1	79470814	79470814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_022159.3	-1	validated	p.G38E	0.931	177	0%	113	26.5%	4	0%	benign(0.033)	tolerated(0.14)	neutral(0.251)	HMMSmart_EGF
HS2ST1	9653	genome.wustl.edu	37	1	87569114	87569114	+	Splice_Site	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_012262.3	+1	reviewed	e6-1	1.000	202	0%	184	13.6%	0	-	-	-	-	-
BRDT	676	genome.wustl.edu	37	1	92446848	92446848	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001726.3	+1	validated	p.E592Q	1.000	171	0%	156	32.7%	0	-	benign(0.188)	tolerated(0.26)	neutral(0.052)	NULL
DR1	1810	genome.wustl.edu	37	1	93826137	93826137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001938.2	+1	reviewed	p.A158T	1.000	79	0%	107	18.7%	14	14.2%	unknown(0)	tolerated(0.24)	-	NULL
CDC14A	8556	genome.wustl.edu	37	1	100843120	100843120	+	Silent	SNP	A	A	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_033312.2	+1	reviewed	p.G53	1.000	175	0%	183	38.8%	0	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
VAV3	10451	genome.wustl.edu	37	1	108152585	108152585	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006113.4	-1	reviewed	p.V661	0.999	110	0%	139	11.5%	11	27.2%	-	-	-	superfamily_SH3-domain
SARS	6301	genome.wustl.edu	37	1	109756675	109756675	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006513.2	+1	reviewed	p.E21Q	1.000	34	0%	37	29.7%	37	51.3%	benign(0.244)	tolerated(0.07)	neutral(0.344)	superfamily_tRNA-binding arm,HMMPfam_Seryl_tRNA_N
CSF1	1435	genome.wustl.edu	37	1	110466651	110466651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000757.4	+1	validated	p.R470C	0.000	159	0%	93	17.2%	7	0%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_CSF-1
CD53	963	genome.wustl.edu	37	1	111434981	111434981	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000560.3	+1	reviewed	p.C26	0.997	161	0%	173	12.1%	26	0%	-	-	-	HMMPfam_Tetraspannin
MAGI3	260425	genome.wustl.edu	37	1	114201836	114201836	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001142782.1	+1	validated	p.L922	1.000	286	0%	269	12.3%	4	25%	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
OLFML3	56944	genome.wustl.edu	37	1	114523945	114523945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020190.2	+1	validated	p.A259T	0.028	162	0%	142	14.1%	35	2.8%	possibly_damaging(0.901)	tolerated(0.39)	neutral(0.373)	HMMPfam_OLF,HMMSmart_SM00284
CSDE1	7812	genome.wustl.edu	37	1	115277082	115277082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001130523.1	-1	validated	p.G203E	1.000	208	0%	174	10.9%	28	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins
TSHB	7252	genome.wustl.edu	37	1	115576077	115576077	+	Missense_Mutation	SNP	G	G	A	rs121918669		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000549.3	+1	reviewed	p.E32K	0.997	287	0%	291	38.5%	0	-	possibly_damaging(0.638)	deleterious(0)	deleterious(0.668)	HMMSmart_SM00068,HMMPfam_Cys_knot,superfamily_Cystine-knot cytokines
NOTCH2	4853	genome.wustl.edu	37	1	120510712	120510712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_024408.2	-1	reviewed	p.E418K	1.000	146	0%	132	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
TCHH	7062	genome.wustl.edu	37	1	152082770	152082770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_007113.2	-1	provisional	p.G975R	0.000	482	0%	506	30.2%	1	0%	unknown(0)	-	-	NULL
FLG2	388698	genome.wustl.edu	37	1	152331234	152331234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001014342.2	-1	provisional	p.P43T	0.981	278	0%	372	54%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_S_100,superfamily_SSF47473
JTB	10899	genome.wustl.edu	37	1	153949481	153949481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006694.3	-1	validated	p.E31G	0.481	179	0%	185	12.4%	213	8.9%	benign(0.277)	deleterious(0.01)	neutral(0.435)	HMMPfam_JTB
RIT1	6016	genome.wustl.edu	37	1	155880523	155880525	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006912.4	-1	validated	p.S10in_frame_del	0.013:0.015:0.001	-	-	-	-	-	-	-	-	-	NULL
MEF2D	4209	genome.wustl.edu	37	1	156452272	156452272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005920.2	-1	provisional	p.Y72C	1.000	128	0%	95	10.5%	41	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_SRF-like
ATF6	22926	genome.wustl.edu	37	1	161816356	161816356	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_007348.2	+1	validated	p.Q435H	0.999	353	0%	628	25%	12	50%	probably_damaging(0.957)	deleterious(0.03)	deleterious(0.765)	NULL
RXRG	6258	genome.wustl.edu	37	1	165370627	165370627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006917.3	-1	reviewed	p.R422H	1.000	77	0%	163	16.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
POU2F1	5451	genome.wustl.edu	37	1	167370776	167370776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002697.2	+1	provisional	p.T490K	0.965	52	0%	91	11%	6	0%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
F5	2153	genome.wustl.edu	37	1	169509950	169509950	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000130.4	-1	reviewed	p.L1460V	0.205	242	0%	338	25.4%	0	-	benign(0.235)	tolerated(0.2)	neutral(0.073)	HMMPfam_LSPR
TNR	7143	genome.wustl.edu	37	1	175331805	175331805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003285.2	-1	validated	p.H950Y	0.998	142	0%	198	12.1%	0	-	benign(0)	tolerated(1)	-	superfamily_Fibronectin type III
ABL2	27	genome.wustl.edu	37	1	179087824	179087824	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_007314.3	-1	reviewed	p.R374P	1.000	179	0%	198	27.3%	1	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
SWT1	54823	genome.wustl.edu	37	1	185259804	185259804	+	Splice_Site	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001105518.1	+1	validated	e18-2	0.990	182	0%	302	12.6%	0	-	-	-	-	-
KCNT2	343450	genome.wustl.edu	37	1	196251447	196251447	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_198503.2	-1	validated	p.L913V	1.000	130	0%	137	23.4%	0	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	NULL
F13B	2165	genome.wustl.edu	37	1	197026294	197026294	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001994.2	-1	reviewed	p.P340	0.002	240	0%	371	29.1%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
NEK7	140609	genome.wustl.edu	37	1	198233334	198233334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_133494.2	+1	validated	p.A114V	1.000	376	0%	624	10.9%	2	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
FAM58BP	339521	genome.wustl.edu	37	1	200182989	200182989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001105517.1	+1	provisional	p.V100M	1.000	237	0%	291	13.1%	0	-	-	-	-	HMMSmart_CYCLIN,superfamily_Cyclin_like
PPP1R12B	4660	genome.wustl.edu	37	1	202400721	202400721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032105.2	+1	reviewed	p.S372F	1.000	450	0%	582	28.4%	0	-	unknown(0)	deleterious(0.03)	-	NULL
SLC26A9	115019	genome.wustl.edu	37	1	205892261	205892261	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_134325.2	-1	reviewed	p.K574	0.981	151	0%	148	28.4%	1	0%	-	-	-	HMMPfam_STAS,superfamily_STAS
IL24	11009	genome.wustl.edu	37	1	207072831	207072831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006850.2	+1	reviewed	p.E71K	0.029	60	0%	111	24.3%	0	-	benign(0.138)	tolerated(0.7)	neutral(0.013)	superfamily_4_helix_cytokine
RPS6KC1	26750	genome.wustl.edu	37	1	213341260	213341260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_012424.3	+1	validated	p.R299W	0.998	207	0.5%	378	11.6%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MIT,HMMSmart_SM00745
USH2A	7399	genome.wustl.edu	37	1	215821980	215821980	+	Silent	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_206933.2	-1	reviewed	p.T4824	0.268	127	0%	207	11.6%	0	-	-	-	-	superfamily_Fibronectin type III
GPATCH2	55105	genome.wustl.edu	37	1	217793126	217793126	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018040.2	-1	provisional	p.S258R	1.000	199	0%	279	14%	11	9%	probably_damaging(0.997)	tolerated(0.1)	deleterious(0.752)	NULL
EPRS	2058	genome.wustl.edu	37	1	220208271	220208271	+	Silent	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004446.2	-1	reviewed	p.L72	0.970	136	0%	196	26.5%	13	15.3%	-	-	-	superfamily_GST_C_like
NVL	4931	genome.wustl.edu	37	1	224482034	224482034	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000469968	-1	known	p.E303K	1.000	126	0%	178	23%	10	30%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENAH	55740	genome.wustl.edu	37	1	225706923	225706923	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001008493.1	-1	validated	p.R260T	1.000	1610	0%	2101	25.5%	49	34.6%	unknown(0)	deleterious(0.01)	-	NULL
TARBP1	6894	genome.wustl.edu	37	1	234608513	234608513	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005646.3	-1	reviewed	p.L326	0.956	346	0%	329	30.4%	0	-	-	-	-	NULL
RGS7	6000	genome.wustl.edu	37	1	240964786	240964786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002924.4	-1	validated	p.R461K	1.000	49	0%	75	22.7%	0	-	possibly_damaging(0.893)	tolerated(0.08)	deleterious(0.652)	NULL
C1orf101	257044	genome.wustl.edu	37	1	244724243	244724243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001130957.1	+1	validated	p.D435H	0.998	478	0%	537	25.7%	1	0%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
OR2M2	391194	genome.wustl.edu	37	1	248343991	248343991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001004688.1	+1	provisional	p.C235Y	0.001	581	35.1%	809	41.3%	0	-	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_SSF81321
KIF3C	3797	genome.wustl.edu	37	2	26203894	26203894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002254.6	-1	validated	p.S298F	1.000	66	0%	56	32.1%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC164	92749	genome.wustl.edu	37	2	26667815	26667815	+	Silent	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_145038.2	+1	validated	p.S465	0.796	56	0%	86	14%	7	28.5%	-	-	-	NULL
TRMT61B	55006	genome.wustl.edu	37	2	29093016	29093016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_017910.3	-1	validated	p.S43L	0.002	85	0%	100	34%	11	36.3%	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
CEBPZ	10153	genome.wustl.edu	37	2	37443343	37443343	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005760.2	-1	validated	p.D774H	0.997	118	0%	196	28.1%	3	66.6%	benign(0.007)	tolerated(0.12)	neutral(0.261)	superfamily_ARM repeat
ANXA4	307	genome.wustl.edu	37	2	70008650	70008650	+	Splice_Site	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001153.3	+1	reviewed	e1-2	0.802	75	0%	91	48.4%	46	100%	-	-	-	-
ATP6V1B1	525	genome.wustl.edu	37	2	71185536	71185536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001692.3	+1	reviewed	p.P116L	1.000	60	0%	69	31.9%	2	0%	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	superfamily_SSF52540
INO80B	83444	genome.wustl.edu	37	2	74683309	74683309	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_031288.2	+1	validated	p.Q150	1.000	43	0%	55	60%	66	63.6%	-	-	-	NULL
CTNNA2	1496	genome.wustl.edu	37	2	80808928	80808928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004389.3	+1	validated	p.A664V	1.000	109	0%	161	10.6%	28	3.5%	possibly_damaging(0.671)	tolerated(0.07)	deleterious(0.557)	HMMPfam_Vinculin
IGKV2-24	28923	genome.wustl.edu	37	2	89476584	89476584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000484817	-1	known	p.L11I	0.019	113	0%	180	22.2%	5	0%	benign(0.224)	deleterious(0.04)	neutral(0.371)	NULL
ARID5A	10865	genome.wustl.edu	37	2	97218196	97218196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000359765	+1	known	p.E583K	0.002	11	0%	11	72.7%	17	29.4%	unknown(0)	-	-	NULL
IL18RAP	8807	genome.wustl.edu	37	2	103040591	103040591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003853.2	+1	reviewed	p.I131V	0.162	162	0%	265	10.9%	0	-	benign(0.008)	deleterious(0.04)	neutral(0.349)	superfamily_Immunoglobulin
NEB	4703	genome.wustl.edu	37	2	152385777	152385777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004543.4	-1	reviewed	p.P5527S	0.996	97	1%	136	14%	0	-	possibly_damaging(0.749)	tolerated(0.12)	deleterious(0.536)	HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152476071	152476071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004543.4	-1	reviewed	p.T3346I	0.948	216	0.5%	310	26.1%	0	-	benign(0.005)	tolerated(0.3)	neutral(0.029)	HMMSmart_SM00227
DPP4	1803	genome.wustl.edu	37	2	162879283	162879283	+	Silent	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001935.3	-1	reviewed	p.T350	0.006	418	0%	501	11%	0	-	-	-	-	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
GRB14	2888	genome.wustl.edu	37	2	165365277	165365277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004490.2	-1	reviewed	p.P301L	1.000	198	0%	245	13.1%	10	10%	benign(0.029)	deleterious(0)	neutral(0.446)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
TTC21B	79809	genome.wustl.edu	37	2	166775800	166775800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_024753.3	-1	validated	p.S554G	1.000	383	0%	513	10.9%	1	0%	possibly_damaging(0.728)	deleterious(0)	deleterious(0.710)	HMMSmart_SM00028,superfamily_TPR-like
NFE2L2	4780	genome.wustl.edu	37	2	178098807	178098807	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006164.3	-1	validated	p.T80P	1.000	180	0%	185	24.9%	12	41.6%	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
TTN	7273	genome.wustl.edu	37	2	179584021	179584021	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000356127	-1	known	p.Q6788	0.683	332	0%	498	11.2%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179613887	179613887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_133379.3	-1	reviewed	p.A4414T	0.000	195	0%	308	10.4%	0	-	benign(0.29)	deleterious(0)	deleterious(0.534)	NULL
TTN	7273	genome.wustl.edu	37	2	179615378	179615378	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_133379.3	-1	reviewed	p.D3917H	0.003	121	0%	225	54.2%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
COL4A3	1285	genome.wustl.edu	37	2	228147127	228147127	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000091.3	+1	reviewed	p.G845	0.946	184	0%	268	10.1%	0	-	-	-	-	HMMPfam_Collagen
CAB39	51719	genome.wustl.edu	37	2	231624777	231624777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001130849.1	+1	validated	p.E21K	1.000	117	0%	180	57.8%	4	50%	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMPfam_Mo25,superfamily_ARM repeat
BHLHE40	8553	genome.wustl.edu	37	3	5025139	5025139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003670.2	+1	reviewed	p.A334V	1.000	147	0%	107	18.7%	145	12.4%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
FBXL2	25827	genome.wustl.edu	37	3	33416781	33416781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_012157.3	+1	reviewed	p.R220H	1.000	133	0%	160	17.5%	4	25%	benign(0.006)	tolerated(0.53)	neutral(0.007)	superfamily_SSF52047
TRANK1	9881	genome.wustl.edu	37	3	36899357	36899357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014831.2	-1	provisional	p.I25N	1.000	219	0%	238	10.9%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
NKTR	4820	genome.wustl.edu	37	3	42684034	42684034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005385.3	+1	reviewed	p.S1363N	1.000	86	0%	115	14.8%	15	26.6%	unknown(0)	deleterious(0)	-	NULL
ZNF167	55888	genome.wustl.edu	37	3	44598780	44598780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018651.2	+1	validated	p.W81R	0.959	113	0%	85	10.6%	1	0%	probably_damaging(0.999)	tolerated(0.83)	deleterious(0.491)	HMMPfam_SCAN,HMMSmart_SM00431
SMARCC1	6599	genome.wustl.edu	37	3	47734759	47734759	+	Silent	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003074.3	-1	validated	p.P399	0.733	177	0%	154	15.6%	7	0%	-	-	-	NULL
LMOD3	56203	genome.wustl.edu	37	3	69168953	69168953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_198271.3	-1	validated	p.E185K	0.000	90	0%	77	31.2%	0	-	benign(0.011)	tolerated(0.87)	neutral(0.001)	NULL
FILIP1L	11259	genome.wustl.edu	37	3	99567441	99567441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_182909.2	-1	validated	p.A1027T	1.000	425	0%	497	15.3%	19	0%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
FILIP1L	11259	genome.wustl.edu	37	3	99568912	99568912	+	Silent	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_182909.2	-1	validated	p.T536	0.989	275	0%	260	14.6%	1	0%	-	-	-	HMMPfam_CortBP2
GPR128	84873	genome.wustl.edu	37	3	100373721	100373721	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032787.2	+1	validated	p.L474	0.995	321	0%	364	13.7%	0	-	-	-	-	HMMPfam_7tm_2
FAM55C	91775	genome.wustl.edu	37	3	101520472	101520472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001134456.1	+1	validated	p.D163N	1.000	100	0%	116	40.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neurexophilin,superfamily_E set domains
SPICE1	152185	genome.wustl.edu	37	3	113169351	113169351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_144718.3	-1	validated	p.A719T	0.000	122	0%	100	17%	8	0%	benign(0.06)	tolerated(0.44)	neutral(0.017)	NULL
KIAA1407	57577	genome.wustl.edu	37	3	113737541	113737541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020817.1	-1	predicted	p.L383F	0.426	856	0%	909	37.8%	3	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TPRA1	131601	genome.wustl.edu	37	3	127292499	127292499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001142646.1	-1	validated	p.S275G	0.000	23	0%	12	33.3%	75	12%	unknown(0)	-	-	NULL
PIK3R4	30849	genome.wustl.edu	37	3	130452772	130452772	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014602.2	-1	validated	p.L357R	1.000	489	0%	415	38.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM-type_fold
NCK1	4690	genome.wustl.edu	37	3	136664466	136664466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006153.3	+1	reviewed	p.A90T	1.000	300	0%	266	15.8%	12	0%	unknown(0)	tolerated(0.19)	-	superfamily_SH3
HLTF	6596	genome.wustl.edu	37	3	148786078	148786078	+	Silent	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003071.3	-1	reviewed	p.H313	1.000	242	0%	216	10.6%	0	-	-	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM194A	131831	genome.wustl.edu	37	3	150377704	150377704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_152394.3	-1	validated	p.R656K	0.000	240	0%	213	41.3%	0	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	NULL
ZBBX	79740	genome.wustl.edu	37	3	167083710	167083710	+	Silent	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_024687.2	-1	validated	p.S79	0.357	83	0%	106	23.6%	0	-	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178928079	178928079	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006218.2	+1	reviewed	p.E453Q	1.000	189	0%	147	38.8%	1	100%	probably_damaging(0.991)	tolerated(0.22)	deleterious(0.486)	HMMPfam_PI3K_C2,superfamily_C2_CaLB
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	C	rs121913273		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006218.2	+1	reviewed	p.E542Q	1.000	105	0%	126	32.5%	0	-	probably_damaging(0.998)	tolerated(0.31)	deleterious(0.501)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
ATP13A5	344905	genome.wustl.edu	37	3	193019018	193019018	+	Silent	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_198505.2	-1	provisional	p.S919	0.186	268	0%	297	11.8%	0	-	-	-	-	superfamily_SSF81665
ATP13A4	84239	genome.wustl.edu	37	3	193174813	193174813	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000428352	-1	known	p.W270*	1.000	156	0%	139	18%	0	-	benign(0.187)	tolerated(0.23)	neutral(0.059)	superfamily_Metal cation-transporting ATPase ATP-binding domain N
MUC4	4585	genome.wustl.edu	37	3	195516480	195516480	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018406.5	-1	reviewed	p.P657	0.000	129	0%	115	40.9%	0	-	-	-	-	NULL
PIGZ	80235	genome.wustl.edu	37	3	196675280	196675280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_025163.2	-1	reviewed	p.S163F	0.672	38	0%	32	21.9%	10	20%	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	HMMPfam_Glyco_transf_22
HTT	3064	genome.wustl.edu	37	4	3190765	3190765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002111.6	+1	reviewed	p.F1771L	1.000	233	0%	200	40.5%	3	33.3%	probably_damaging(0.964)	tolerated(0.25)	neutral(0.443)	NULL
LAP3	51056	genome.wustl.edu	37	4	17609072	17609072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015907.2	+1	validated	p.H474Y	0.992	118	0%	96	41.7%	120	30.8%	possibly_damaging(0.829)	tolerated(0.45)	neutral(0.327)	HMMPfam_Peptidase_M17,superfamily_Zn-dependent exopeptidases
LRRC66	339977	genome.wustl.edu	37	4	52883573	52883573	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001024611.1	-1	provisional	p.F69	0.005	202	0%	184	39.7%	0	-	-	-	-	superfamily_SSF52058
CLOCK	9575	genome.wustl.edu	37	4	56342166	56342166	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004898.2	-1	reviewed	p.F104L	1.000	106	0%	100	34%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_HLH helix-loop-helix DNA-binding domain
UTP3	57050	genome.wustl.edu	37	4	71554690	71554690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020368.2	+1	validated	p.G99E	0.001	49	0%	54	22.2%	42	23.8%	benign(0)	tolerated(0.64)	neutral(0.003)	NULL
STBD1	8987	genome.wustl.edu	37	4	77230489	77230489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003943.3	+1	validated	p.S138F	0.036	173	0%	136	37.5%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ARHGAP24	83478	genome.wustl.edu	37	4	86916302	86916302	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001025616.2	+1	validated	p.R499*	0.653	280	0%	281	12.1%	0	-	-	-	-	NULL
PKD2	5311	genome.wustl.edu	37	4	88986631	88986631	+	Nonsense_Mutation	SNP	C	C	T	rs121918040		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000297.2	+1	reviewed	p.R742*	1.000	258	0%	276	35.1%	7	0%	-	-	-	superfamily_SSF47473
KIAA1109	84162	genome.wustl.edu	37	4	123156175	123156175	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015312.3	+1	reviewed	p.D1191H	1.000	187	0%	189	29.6%	0	-	possibly_damaging(0.531)	deleterious(0.03)	deleterious(0.543)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123160911	123160913	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015312.3	+1	reviewed	p.R1360in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
HHIP	64399	genome.wustl.edu	37	4	145633221	145633221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_022475.1	+1	reviewed	p.Y474C	1.000	221	0%	221	17.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Soluble quinoprotein glucose dehydrogenase
FBXW7	55294	genome.wustl.edu	37	4	153244092	153244092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_033632.2	-1	reviewed	p.R689W	1.000	305	0%	394	39.3%	15	26.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320
TIGD4	201798	genome.wustl.edu	37	4	153691222	153691222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_145720.2	-1	reviewed	p.S312Y	1.000	245	0%	140	43.6%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	HMMPfam_DDE
CTSO	1519	genome.wustl.edu	37	4	156864317	156864317	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001334.2	-1	reviewed	p.E79Q	1.000	308	0%	289	35.3%	1	100%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	superfamily_SSF54001
ETFDH	2110	genome.wustl.edu	37	4	159627897	159627897	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004453.2	+1	reviewed	p.H529D	1.000	273	0%	260	38.1%	26	46.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ETF_QO
FSTL5	56884	genome.wustl.edu	37	4	162459356	162459356	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020116.3	-1	validated	p.I425N	1.000	544	0%	705	16.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_I-set,superfamily_SSF48726
MFAP3L	9848	genome.wustl.edu	37	4	170913164	170913164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_021647.6	-1	validated	p.Q199K	1.000	194	0%	162	11.7%	6	16.6%	benign(0)	deleterious(0)	neutral(0.445)	NULL
GALNTL6	442117	genome.wustl.edu	37	4	173873355	173873355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001034845.2	+1	validated	p.W439C	1.000	38	0%	51	11.8%	0	-	probably_damaging(0.997)	tolerated(0.19)	deleterious(0.516)	superfamily_Nucleotide-diphospho-sugar transferases
PLEKHG4B	153478	genome.wustl.edu	37	5	163424	163424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_052909.3	+1	validated	p.M723I	0.586	24	0%	18	50%	0	-	benign(0.005)	tolerated(0.45)	neutral(0.012)	NULL
SLC12A7	10723	genome.wustl.edu	37	5	1057616	1057616	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006598.2	-1	validated	p.S999C	0.012	45	0%	32	25%	37	43.2%	benign(0.005)	deleterious(0.03)	neutral(0.364)	NULL
ADAMTS12	81792	genome.wustl.edu	37	5	33535025	33535025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_030955.2	-1	reviewed	p.E1507K	0.408	174	0%	182	47.8%	0	-	probably_damaging(0.982)	tolerated(0.41)	neutral(0.442)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
EMB	133418	genome.wustl.edu	37	5	49699124	49699124	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_198449.2	-1	reviewed	p.L255	0.998	275	0%	284	37.7%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
ISL1	3670	genome.wustl.edu	37	5	50685569	50685569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002202.2	+1	reviewed	p.E190K	1.000	41	0%	30	20%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
MOCS2	4338	genome.wustl.edu	37	5	52396255	52396255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004531.3	-1	reviewed	p.P163S	1.000	124	0%	129	20.2%	21	38%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Mb_biosynth_MoaE
FST	10468	genome.wustl.edu	37	5	52780976	52780976	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_013409.1	+1	reviewed	p.Y291H	0.998	200	0%	187	13.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kazal_1,HMMSmart_SM00280,superfamily_Kazal-type serine protease inhibitors
JMY	133746	genome.wustl.edu	37	5	78596042	78596042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_152405.4	+1	validated	p.D532N	1.000	194	0%	220	41.4%	0	-	benign(0.273)	deleterious(0.02)	neutral(0.412)	NULL
RASA1	5921	genome.wustl.edu	37	5	86627205	86627205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002890.1	+1	reviewed	p.R194C	1.000	212	0%	226	11.1%	6	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
TMEM161B	153396	genome.wustl.edu	37	5	87516531	87516531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_153354.3	-1	provisional	p.H99Y	1.000	201	0%	183	34.4%	0	-	possibly_damaging(0.916)	tolerated(0.13)	deleterious(0.619)	HMMPfam_Tmemb_161AB
GPR98	84059	genome.wustl.edu	37	5	89953958	89953958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032119.3	+1	reviewed	p.E1539K	1.000	343	0%	287	12.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TNFAIP8	25816	genome.wustl.edu	37	5	118728551	118728551	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014350.2	+1	validated	p.Q24	1.000	39	0%	35	34.3%	0	-	-	-	-	HMMPfam_DUF758
RAD50	10111	genome.wustl.edu	37	5	131973808	131973808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005732.3	+1	reviewed	p.E1171K	1.000	114	0%	106	41.5%	20	40%	possibly_damaging(0.832)	deleterious(0.05)	deleterious(0.662)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
TXNDC15	79770	genome.wustl.edu	37	5	134223686	134223686	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000508779	+1	known	p.A119V	0.000	78	0%	53	13.2%	47	23.4%	-	-	-	NULL
MATR3	9782	genome.wustl.edu	37	5	138652768	138652768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018834.4	+1	reviewed	p.P386T	1.000	98	0%	136	11.8%	44	20.4%	probably_damaging(0.996)	tolerated(0.38)	deleterious(0.479)	NULL
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139908085	139908085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020690.4	+1	reviewed	p.P1852T	1.000	320	0%	303	36.3%	26	46.1%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
PCDHA4	56144	genome.wustl.edu	37	5	140188392	140188392	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018907.2	+1	reviewed	p.A540	0.648	57	0%	39	35.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140215581	140215581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018910.2	+1	reviewed	p.R538H	0.988	38	0%	30	20%	0	-	possibly_damaging(0.667)	deleterious(0.02)	deleterious(0.619)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB1	29930	genome.wustl.edu	37	5	140432167	140432167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_013340.2	+1	reviewed	p.I371T	0.971	132	0%	126	13.5%	0	-	benign(0.01)	deleterious(0)	neutral(0.445)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB3	56132	genome.wustl.edu	37	5	140481165	140481165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018937.2	+1	reviewed	p.A311V	0.000	105	0%	62	12.9%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140788156	140788156	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018926.2	+1	reviewed	p.H129	0.289	144	0%	70	32.9%	0	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140788505	140788505	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018926.2	+1	reviewed	p.E246*	0.018	58	0%	34	38.2%	0	-	-	-	-	superfamily_Cadherin-like
TCERG1	10915	genome.wustl.edu	37	5	145890170	145890170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006706.3	+1	reviewed	p.T1088A	1.000	91	0%	86	19.8%	24	12.5%	unknown(0)	deleterious(0.01)	-	NULL
SLC36A1	206358	genome.wustl.edu	37	5	150838428	150838428	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_078483.2	+1	reviewed	p.P25	0.056	94	0%	90	23.3%	1	0%	-	-	-	NULL
TSPAN17	26262	genome.wustl.edu	37	5	176079857	176079857	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000507471	+1	known	p.S66L	1.000	350	0%	233	32.2%	25	40%	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
NHP2	55651	genome.wustl.edu	37	5	177576828	177576828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001034833.1	-1	reviewed	p.Q81R	0.975	76	0%	41	12.2%	220	15.9%	benign(0.003)	tolerated(0.21)	neutral(0.044)	NULL
MAPK9	5601	genome.wustl.edu	37	5	179666941	179666941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002752.4	-1	reviewed	p.A348V	0.995	115	0%	116	15.5%	14	7.1%	possibly_damaging(0.903)	deleterious(0.03)	deleterious(0.722)	superfamily_Protein kinase-like (PK-like)
BTNL3	10917	genome.wustl.edu	37	5	180432363	180432363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_197975.1	+1	validated	p.H298Y	0.009	294	0%	303	39.9%	0	-	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	HMMSmart_PRY
TUBB2A	7280	genome.wustl.edu	37	6	3156348	3156348	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001069.2	-1	validated	p.P32	1.000	184	10.3%	157	12.1%	5	0%	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
LYRM4	57128	genome.wustl.edu	37	6	5216907	5216907	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020408.4	-1	validated	p.E51Q	0.998	338	0%	476	56.1%	11	72.7%	benign(0.253)	tolerated(0.38)	neutral(0.043)	HMMPfam_Complex1_LYR
HIST1H3D	8351	genome.wustl.edu	37	6	26197400	26197400	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003530.3	-1	reviewed	p.R27G	1.000	71	0%	58	24.1%	6	50%	benign(0.159)	-	-	superfamily_Histone-fold
OR2J3	442186	genome.wustl.edu	37	6	29080229	29080229	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001005216.2	+1	validated	p.L188V	0.021	298	0%	436	28%	0	-	probably_damaging(0.992)	tolerated(0.16)	deleterious(0.507)	HMMPfam_7tm_1,superfamily_SSF81321
MDC1	9656	genome.wustl.edu	37	6	30675937	30675937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014641.2	-1	reviewed	p.R807G	0.042	602	0%	831	11.2%	1	100%	possibly_damaging(0.717)	-	-	NULL
TNXB	7148	genome.wustl.edu	37	6	32017805	32017805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_019105.6	-1	reviewed	p.V3135I	0.533	106	0%	103	54.4%	1	0%	possibly_damaging(0.888)	tolerated(0.39)	neutral(0.363)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
AGER	177	genome.wustl.edu	37	6	32151709	32151709	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001136.3	-1	reviewed	p.L36	0.963	105	0%	93	57%	1	100%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
NOTCH4	4855	genome.wustl.edu	37	6	32182003	32182003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004557.3	-1	reviewed	p.T684M	0.975	397	0%	519	10.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
UHRF1BP1	54887	genome.wustl.edu	37	6	34802570	34802570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_017754.3	+1	validated	p.D201N	1.000	214	0%	268	55.2%	1	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ABCC10	89845	genome.wustl.edu	37	6	43412951	43412951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_033450.2	+1	reviewed	p.V949I	0.962	120	0%	121	12.4%	12	16.6%	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
GPR116	221395	genome.wustl.edu	37	6	46826150	46826150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001098518.1	-1	validated	p.L1164F	1.000	105	0%	128	10.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2
GPR110	266977	genome.wustl.edu	37	6	46977303	46977303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_153840.2	-1	validated	p.R623H	1.000	100	0%	164	11%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2
BMP5	653	genome.wustl.edu	37	6	55623845	55623845	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_021073.2	-1	reviewed	p.N391	1.000	235	0%	404	10.6%	0	-	-	-	-	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501
DST	667	genome.wustl.edu	37	6	56470074	56470074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000370769	-1	known	p.D2907N	0.007	118	0.8%	128	54.7%	0	-	benign(0.184)	deleterious(0.03)	neutral(0.382)	PatternScan_RIBOSOMAL_L23
DST	667	genome.wustl.edu	37	6	56473404	56473404	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000370769	-1	known	p.E1797*	0.973	67	0%	83	57.8%	0	-	-	-	-	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
FAM135A	57579	genome.wustl.edu	37	6	71235110	71235110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001105531.2	+1	validated	p.E579K	1.000	280	0%	390	63.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83851647	83851647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015018.2	+1	validated	p.R1808K	1.000	182	0%	222	61.7%	2	100%	probably_damaging(0.994)	tolerated(0.45)	neutral(0.464)	NULL
SNX14	57231	genome.wustl.edu	37	6	86257068	86257068	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_153816.3	-1	reviewed	p.Q320	1.000	103	0%	147	27.9%	2	0%	-	-	-	NULL
MDN1	23195	genome.wustl.edu	37	6	90426508	90426508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014611.1	-1	provisional	p.E2202K	1.000	207	0%	211	24.6%	0	-	possibly_damaging(0.69)	tolerated(0.64)	neutral(0.250)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCNC	892	genome.wustl.edu	37	6	99994344	99994344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005190.3	-1	reviewed	p.L202P	1.000	198	0%	281	11.7%	85	15.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00385,superfamily_Cyclin-like
TRDN	10345	genome.wustl.edu	37	6	123539787	123539787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006073.2	-1	validated	p.G717S	0.035	37	0%	60	51.7%	0	-	unknown(0)	deleterious(0)	-	NULL
PTPRK	5796	genome.wustl.edu	37	6	128840283	128840283	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000368202	-1	known	p.S35*	0.000	12	0%	19	21.1%	1	0%	-	-	-	NULL
TAAR6	319100	genome.wustl.edu	37	6	132891739	132891739	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_175067.1	+1	reviewed	p.T93	0.380	192	0%	303	23.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
EYA4	2070	genome.wustl.edu	37	6	133783489	133783489	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004100.4	+1	reviewed	p.L152V	1.000	210	0%	272	57.7%	0	-	probably_damaging(0.994)	tolerated(0.15)	deleterious(0.693)	NULL
LTV1	84946	genome.wustl.edu	37	6	144165625	144165625	+	Silent	SNP	T	T	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032860.3	+1	provisional	p.P2	1.000	198	0%	259	56.4%	10	60%	-	-	-	NULL
SASH1	23328	genome.wustl.edu	37	6	148865932	148865932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015278.3	+1	validated	p.T1109M	0.990	17	0%	27	55.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SYNJ2	8871	genome.wustl.edu	37	6	158497759	158497759	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003898.3	+1	reviewed	p.P798	1.000	102	0%	99	15.2%	2	0%	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
CARD11	84433	genome.wustl.edu	37	7	2984010	2984010	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032415.3	-1	validated	p.L174	1.000	97	0%	93	11.8%	1	0%	-	-	-	NULL
ACTB	60	genome.wustl.edu	37	7	5567994	5567994	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001101.3	-1	reviewed	p.Y240fs	0.568	-	-	-	-	-	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ZNF680	340252	genome.wustl.edu	37	7	63981624	63981624	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_178558.4	-1	validated	p.S503*	0.001	194	0%	300	21.7%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FGL2	10875	genome.wustl.edu	37	7	76826058	76826058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006682.2	-1	reviewed	p.N286K	0.190	278	0%	315	10.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
PTPN12	5782	genome.wustl.edu	37	7	77214887	77214887	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002835.3	+1	reviewed	p.E137Q	1.000	237	0%	392	54.8%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
ENSG00000207094	0	genome.wustl.edu	37	7	88078455	88078455	+	RNA	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000384366	-1	novel	NULL	0.011	51	0%	70	14.3%	0	-	-	-	-	-
LMTK2	22853	genome.wustl.edu	37	7	97833412	97833412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014916.3	+1	reviewed	p.A1466V	0.395	57	0%	78	16.7%	5	0%	benign(0.011)	deleterious(0)	neutral(0.445)	NULL
DNAJC2	27000	genome.wustl.edu	37	7	102963017	102963017	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014377.1	-1	reviewed	p.E292Q	1.000	70	0%	53	30.2%	13	23%	unknown(0)	tolerated(0.25)	-	NULL
RELN	5649	genome.wustl.edu	37	7	103202136	103202136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005045.3	-1	reviewed	p.G1791E	1.000	174	0%	232	12.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF57196
COG5	10466	genome.wustl.edu	37	7	107204360	107204360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006348.3	-1	validated	p.I25M	0.926	25	0%	17	29.4%	0	-	benign(0.278)	-	-	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121638061	121638061	+	Splice_Site	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002851.2	+1	reviewed	e10+1	1.000	67	0%	88	37.5%	0	-	-	-	-	-
UBN2	254048	genome.wustl.edu	37	7	138968631	138968631	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_173569.3	+1	validated	p.Q911E	1.000	227	0%	356	30.3%	4	0%	possibly_damaging(0.812)	tolerated(0.26)	neutral(0.340)	NULL
DENND2A	27147	genome.wustl.edu	37	7	140259537	140259537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015689.3	-1	validated	p.K620N	1.000	59	0%	75	17.3%	7	0%	benign(0.15)	tolerated(0.18)	neutral(0.069)	HMMPfam_uDENN,HMMSmart_SM00800
ZNF746	155061	genome.wustl.edu	37	7	149172576	149172576	+	Splice_Site	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000458143	-1	known	e7-2	1.000	56	0%	50	10%	0	-	-	-	-	-
USP17L7	392197	genome.wustl.edu	37	8	11990295	11990295	+	Silent	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000416902	-1	known	p.L408	0.023	209	0%	336	28.6%	0	-	-	-	-	NULL
PPP3CC	5533	genome.wustl.edu	37	8	22386044	22386044	+	Silent	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005605.3	+1	provisional	p.L365	1.000	75	0%	168	46.4%	10	40%	-	-	-	superfamily_SSF56300
SLC20A2	6575	genome.wustl.edu	37	8	42294518	42294518	+	Silent	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006749.3	-1	provisional	p.G504	1.000	30	0%	50	14%	40	5%	-	-	-	HMMPfam_PHO4
TRPA1	8989	genome.wustl.edu	37	8	72958768	72958768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_007332.2	-1	reviewed	p.E681K	0.987	230	0%	417	10.8%	0	-	benign(0.016)	tolerated(0.74)	neutral(0.002)	NULL
RUNX1T1	862	genome.wustl.edu	37	8	92999165	92999165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_175634.1	-1	reviewed	p.H343N	1.000	238	0%	409	36.2%	2	0%	benign(0.018)	tolerated(0.44)	neutral(0.013)	HMMPfam_NHR2
RGS22	26166	genome.wustl.edu	37	8	101076043	101076043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015668.3	-1	validated	p.S318F	0.032	358	0%	604	38.4%	1	100%	possibly_damaging(0.923)	tolerated(0.08)	deleterious(0.672)	NULL
VLDLR	7436	genome.wustl.edu	37	9	2646528	2646528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003383.3	+1	reviewed	p.S560F	1.000	120	0%	105	35.2%	3	33.3%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
VCP	7415	genome.wustl.edu	37	9	35067979	35067979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_007126.3	-1	reviewed	p.V71I	1.000	165	0%	117	11.1%	151	1.9%	benign(0.005)	tolerated(0.11)	neutral(0.272)	HMMPfam_CDC48_N,superfamily_ADC-like
PIGO	84720	genome.wustl.edu	37	9	35092041	35092041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032634.2	-1	reviewed	p.R615W	0.227	84	0%	53	30.2%	8	62.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LOC730110	730110	genome.wustl.edu	37	9	35148106	35148106	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	XM_002342891.1	-1	model	p.K334	0.932	132	0%	137	38%	0	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FRMPD1	22844	genome.wustl.edu	37	9	37740768	37740768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014907.2	+1	validated	p.S748N	0.051	64	0%	41	19.5%	0	-	benign(0.002)	tolerated(0.15)	neutral(0.241)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79835225	79835225	+	Silent	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_033305.2	+1	reviewed	p.V305	1.000	138	0%	179	16.2%	0	-	-	-	-	NULL
TLE4	7091	genome.wustl.edu	37	9	82333698	82333698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_007005.3	+1	validated	p.A468T	1.000	115	0%	92	15.2%	8	12.5%	benign(0.226)	deleterious(0)	neutral(0.467)	superfamily_WD40 repeat-like
FRMD3	257019	genome.wustl.edu	37	9	85863431	85863431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_174938.4	-1	validated	p.G399D	1.000	126	0%	142	14.1%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
NANS	54187	genome.wustl.edu	37	9	100823096	100823096	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018946.3	+1	reviewed	p.K55N	1.000	142	0%	86	37.2%	112	32.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_NeuB,superfamily_Aldolase
TEX10	54881	genome.wustl.edu	37	9	103109502	103109502	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_017746.3	-1	validated	p.Q123E	1.000	259	0%	164	25%	4	25%	-	-	-	HMMPfam_HEAT,superfamily_ARM-type_fold
C9orf125	84302	genome.wustl.edu	37	9	104238683	104238683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032342.1	-1	provisional	p.R231H	1.000	137	0%	102	32.4%	0	-	possibly_damaging(0.814)	tolerated(0.21)	neutral(0.351)	NULL
PPP3R2	5535	genome.wustl.edu	37	9	104357045	104357045	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_147180.2	-1	provisional	p.P56	0.413	106	0%	77	13%	0	-	-	-	-	superfamily_SSF47473
ACTL7B	10880	genome.wustl.edu	37	9	111616967	111616967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006686.3	-1	reviewed	p.C415Y	1.000	48	0%	39	12.8%	0	-	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
EPB41L4B	54566	genome.wustl.edu	37	9	112025342	112025342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_019114.3	-1	validated	p.L207V	1.000	37	0%	19	36.8%	1	0%	possibly_damaging(0.782)	deleterious(0.01)	deleterious(0.699)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
RGS3	5998	genome.wustl.edu	37	9	116359103	116359103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_144488.4	+1	reviewed	p.T1156M	0.996	24	0%	28	25%	61	9.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
TNC	3371	genome.wustl.edu	37	9	117846669	117846669	+	Silent	SNP	T	T	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002160.2	-1	validated	p.T650	0.002	94	0%	84	15.5%	25	0%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
ZMYND11	10771	genome.wustl.edu	37	10	255984	255984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006624.4	+1	reviewed	p.E51G	1.000	282	0%	383	13.3%	14	0%	probably_damaging(0.978)	tolerated(0.16)	deleterious(0.480)	NULL
FAM208B	54906	genome.wustl.edu	37	10	5789701	5789701	+	Silent	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_017782.4	+1	validated	p.S1439	0.931	184	0%	185	10.3%	7	0%	-	-	-	NULL
CUBN	8029	genome.wustl.edu	37	10	17147460	17147460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001081.3	-1	reviewed	p.C409Y	1.000	150	0%	235	15.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
KIAA1462	57608	genome.wustl.edu	37	10	30336741	30336741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020848.2	-1	validated	p.M1V	0.991	87	0%	88	11.4%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MTPAP	55149	genome.wustl.edu	37	10	30630501	30630501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018109.3	-1	validated	p.R76W	0.997	290	0%	340	10.9%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP12	94134	genome.wustl.edu	37	10	32115232	32115232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018287.5	-1	provisional	p.W510C	1.000	133	0.8%	246	13.4%	3	0%	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
CSGALNACT2	55454	genome.wustl.edu	37	10	43654240	43654240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018590.3	+1	provisional	p.H247Y	1.000	151	0%	238	13%	2	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_CHGN,superfamily_Nucleotide-diphospho-sugar transferases
MAPK8	5599	genome.wustl.edu	37	10	49635122	49635122	+	Splice_Site	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_139047.1	+1	reviewed	e9-1	1.000	112	0%	180	14.4%	0	-	-	-	-	-
ERCC6	2074	genome.wustl.edu	37	10	50740606	50740606	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000124.2	-1	reviewed	p.S135	0.009	61	0%	72	19.4%	9	0%	-	-	-	NULL
MSS51	118490	genome.wustl.edu	37	10	75185580	75185580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001024593.1	-1	validated	p.A353V	1.000	68	0%	109	15.6%	2	0%	possibly_damaging(0.837)	deleterious(0.02)	deleterious(0.703)	NULL
SH2D4B	387694	genome.wustl.edu	37	10	82329948	82329948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_207372.2	+1	validated	p.D75H	0.973	100	0%	187	54%	0	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
PTEN	5728	genome.wustl.edu	37	10	89692895	89692895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000371953	+1	known	p.G127R	1.000	329	0%	546	84.2%	19	84.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PIK3AP1	118788	genome.wustl.edu	37	10	98412557	98412557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_152309.2	-1	validated	p.D204N	0.005	435	0%	493	53.1%	1	0%	benign(0.02)	tolerated(0.19)	neutral(0.051)	NULL
PI4K2A	55361	genome.wustl.edu	37	10	99416602	99416602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018425.2	+1	provisional	p.E265K	1.000	288	0%	378	57.7%	9	44.4%	benign(0.006)	tolerated(0.81)	neutral(0.001)	HMMPfam_PI3_PI4_kinase
SEC31B	25956	genome.wustl.edu	37	10	102248652	102248652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015490.3	-1	reviewed	p.A1084V	0.397	73	0%	80	13.8%	3	0%	benign(0.282)	tolerated(0.13)	neutral(0.339)	NULL
CNNM2	54805	genome.wustl.edu	37	10	104678816	104678816	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_017649.3	+1	validated	p.T193	1.000	31	0%	54	16.7%	4	0%	-	-	-	NULL
WDR96	80217	genome.wustl.edu	37	10	105926278	105926278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_025145.5	-1	provisional	p.E1003K	1.000	292	0%	397	11.8%	3	0%	probably_damaging(0.977)	tolerated(0.19)	neutral(0.468)	superfamily_WD40 repeat-like
RAB11FIP2	22841	genome.wustl.edu	37	10	119799729	119799729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014904.2	-1	validated	p.S234F	1.000	182	0%	205	26.8%	1	100%	possibly_damaging(0.703)	tolerated(0.09)	deleterious(0.549)	NULL
OR51F2	119694	genome.wustl.edu	37	11	4843610	4843610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001004753.1	+1	provisional	p.L332P	0.000	233	0%	272	13.6%	0	-	possibly_damaging(0.797)	deleterious(0)	deleterious(0.744)	NULL
OR52N1	79473	genome.wustl.edu	37	11	5809686	5809686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001001913.1	-1	provisional	p.A121T	1.000	273	0%	325	10.8%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_7tm_1,superfamily_SSF81321
OR2AG2	338755	genome.wustl.edu	37	11	6789286	6789286	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001004490.1	-1	provisional	p.L301	0.010	130	0%	143	39.9%	0	-	-	-	-	superfamily_SSF81321
C11orf41	25758	genome.wustl.edu	37	11	33564727	33564727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_012194.1	+1	validated	p.D243N	0.001	379	0%	351	38.7%	0	-	benign(0.323)	tolerated(0.11)	neutral(0.373)	NULL
CRY2	1408	genome.wustl.edu	37	11	45877632	45877632	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_021117.3	+1	validated	p.R126	0.999	170	0%	195	18.5%	3	33.3%	-	-	-	HMMPfam_DNA_photolyase,superfamily_DNA_photolyase_N
TRIM48	79097	genome.wustl.edu	37	11	55036790	55036790	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_024114.3	+1	validated	p.L217	0.161	89	0%	97	37.1%	0	-	-	-	-	NULL
OR8K3	219473	genome.wustl.edu	37	11	56086301	56086301	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001005202.1	+1	provisional	p.V173	0.000	199	0%	211	11.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5M9	390162	genome.wustl.edu	37	11	56230204	56230204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001004743.1	-1	provisional	p.R225H	0.000	65	0%	79	12.7%	0	-	benign(0.062)	deleterious(0.04)	neutral(0.353)	HMMPfam_7tm_1,superfamily_SSF81321
LOC100287520	100287520	genome.wustl.edu	37	11	58862133	58862133	+	Silent	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	XM_002343089.1	+1	model	p.P298	0.032	40	0%	43	34.9%	0	-	-	-	-	HMMPfam_Gly_acyl_tr_C,superfamily_Acyl-CoA N-acyltransferases (Nat)
AHNAK	79026	genome.wustl.edu	37	11	62295517	62295517	+	Silent	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001620.1	-1	validated	p.L2124	0.002	557	0%	394	42.9%	0	-	-	-	-	NULL
METTL12	751071	genome.wustl.edu	37	11	62434441	62434441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001043229.1	+1	validated	p.Y214C	0.000	103	0%	67	10.4%	1	100%	benign(0.253)	tolerated(0.17)	neutral(0.085)	superfamily_SSF53335
CHKA	1119	genome.wustl.edu	37	11	67832039	67832039	+	Silent	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001277.2	-1	reviewed	p.T395	0.997	69	0%	87	14.9%	3	33.3%	-	-	-	superfamily_Protein kinase-like (PK-like)
PCF11	51585	genome.wustl.edu	37	11	82876841	82876841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015885.3	+1	validated	p.R301K	1.000	63	0%	65	16.9%	2	0%	possibly_damaging(0.495)	tolerated(0.19)	neutral(0.215)	NULL
CCDC89	220388	genome.wustl.edu	37	11	85396685	85396685	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_152723.1	-1	provisional	p.S163	0.085	159	0%	156	15.4%	3	66.6%	-	-	-	NULL
KIAA1377	57562	genome.wustl.edu	37	11	101834422	101834422	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020802.2	+1	validated	p.F886I	0.001	197	0%	242	16.9%	1	0%	benign(0.013)	tolerated(0.39)	neutral(0.017)	NULL
CWF19L2	143884	genome.wustl.edu	37	11	107263578	107263578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_152434.2	-1	validated	p.S554F	1.000	178	0%	156	35.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DDX10	1662	genome.wustl.edu	37	11	108550233	108550233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004398.2	+1	reviewed	p.R265H	1.000	297	0%	216	14.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
LAYN	143903	genome.wustl.edu	37	11	111425943	111425943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_178834.3	+1	provisional	p.E196K	0.358	182	0%	147	28.6%	1	0%	probably_damaging(0.971)	tolerated(0.08)	deleterious(0.713)	NULL
CRYAB	1410	genome.wustl.edu	37	11	111779667	111779667	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001885.1	-1	reviewed	p.E117Q	1.000	84	0%	105	31.4%	16	25%	probably_damaging(0.953)	tolerated(0.08)	deleterious(0.697)	HMMPfam_HSP20,superfamily_HSP20-like chaperones
DRD2	1813	genome.wustl.edu	37	11	113287604	113287604	+	Silent	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000795.3	-1	reviewed	p.L171	0.996	35	0%	33	42.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM55B	120406	genome.wustl.edu	37	11	114569354	114569354	+	Silent	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_182495.5	+1	validated	p.E240	0.011	191	0%	241	40.2%	0	-	-	-	-	NULL
SIK3	23387	genome.wustl.edu	37	11	116732609	116732609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_025164.3	-1	validated	p.L649F	1.000	28	0%	31	51.6%	5	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Protein kinase-like (PK-like)
OR8D2	283160	genome.wustl.edu	37	11	124189805	124189805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001002918.1	-1	provisional	p.C97R	0.995	347	0%	429	18.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SLC6A13	6540	genome.wustl.edu	37	12	336796	336796	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_016615.2	-1	provisional	p.F290	0.972	61	0%	43	32.6%	0	-	-	-	-	HMMPfam_SNF
CACNA1C	775	genome.wustl.edu	37	12	2800290	2800290	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_199460.2	+1	reviewed	p.A2197	0.238	15	0.000	9	0.556	2	100%	-	-	-	NULL
PTMS	5763	genome.wustl.edu	37	12	6878783	6878783	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002824.4	+1	validated	p.K20	1.000	268	0%	153	47.7%	200	34%	-	-	-	HMMPfam_Prothymosin
GPR162	27239	genome.wustl.edu	37	12	6933210	6933210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_019858.1	+1	reviewed	p.E49G	1.000	50	0%	44	18.2%	22	0%	probably_damaging(0.98)	tolerated(0.06)	deleterious(0.746)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR162	27239	genome.wustl.edu	37	12	6933545	6933545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_019858.1	+1	reviewed	p.E161K	1.000	69	0%	56	35.7%	7	71.4%	benign(0.417)	tolerated(0.08)	neutral(0.435)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C1RL	51279	genome.wustl.edu	37	12	7249115	7249115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_016546.2	-1	validated	p.H446Y	0.000	173	0%	129	40.3%	50	34%	benign(0.045)	deleterious(0.04)	neutral(0.351)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
A2ML1	144568	genome.wustl.edu	37	12	9000181	9000181	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_144670.3	+1	validated	p.G574*	1.000	318	0%	279	14.7%	1	0%	-	-	-	HMMPfam_A2M_N_2
PTPRO	5800	genome.wustl.edu	37	12	15650224	15650224	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_030667.1	+1	reviewed	p.S132C	1.000	277	0%	328	37.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ABCC9	10060	genome.wustl.edu	37	12	21968779	21968779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005691.2	-1	reviewed	p.I1314T	1.000	169	0%	175	12.6%	0	-	possibly_damaging(0.616)	deleterious(0.01)	deleterious(0.620)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ASUN	55726	genome.wustl.edu	37	12	27066558	27066558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018164.2	-1	validated	p.N546S	1.000	660	0%	727	16.6%	6	0%	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_DUF2151
C12orf71	728858	genome.wustl.edu	37	12	27234159	27234159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001080406.1	-1	inferred	p.R253K	0.252	297	0%	312	34.3%	0	-	benign(0.035)	deleterious(0)	neutral(0.447)	NULL
BICD1	636	genome.wustl.edu	37	12	32481304	32481304	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001714.2	+1	reviewed	p.L639	1.000	234	0%	219	37.9%	5	80%	-	-	-	HMMPfam_BicD
ZNF641	121274	genome.wustl.edu	37	12	48736909	48736909	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_152320.2	-1	validated	p.V388	0.982	164	0%	126	38.1%	3	66.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ARF3	377	genome.wustl.edu	37	12	49333820	49333820	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001659.2	-1	reviewed	p.K73	1.000	263	0%	286	39.9%	146	36.3%	-	-	-	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMARCD1	6602	genome.wustl.edu	37	12	50482365	50482365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003076.4	+1	reviewed	p.S239F	1.000	128	0%	80	51.2%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DIP2B	57609	genome.wustl.edu	37	12	51100376	51100376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_173602.2	+1	validated	p.R821Q	1.000	178	0%	186	42.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Acetyl-CoA synthetase-like
KRT5	3852	genome.wustl.edu	37	12	52911523	52911523	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000424.3	-1	reviewed	p.Q315*	1.000	236	0%	171	14%	14	0%	-	-	-	HMMPfam_Filament
SP1	6667	genome.wustl.edu	37	12	53776703	53776703	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_138473.2	+1	validated	p.A324	1.000	112	0%	63	12.7%	12	25%	-	-	-	NULL
PCBP2	5094	genome.wustl.edu	37	12	53865533	53865533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005016.5	+1	reviewed	p.V336F	1.000	127	0%	139	12.9%	687	10.1%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
GPR84	53831	genome.wustl.edu	37	12	54757432	54757434	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020370.2	-1	validated	p.L68in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GTSF1	121355	genome.wustl.edu	37	12	54854203	54854203	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_144594.2	-1	validated	p.R149*	1.000	96	0%	98	15.3%	0	-	-	-	-	HMMPfam_UPF0224
LRP1	4035	genome.wustl.edu	37	12	57537558	57537558	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002332.2	+1	reviewed	p.Q142fs	0.854	-	-	-	-	-	-	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
LRP1	4035	genome.wustl.edu	37	12	57587773	57587773	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002332.2	+1	reviewed	p.D2632	0.964	25	0%	16	50%	6	33.3%	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,superfamily_YWTD domain
LEMD3	23592	genome.wustl.edu	37	12	65639661	65639661	+	Silent	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014319.4	+1	reviewed	p.C838	1.000	233	0%	265	12.8%	0	-	-	-	-	superfamily_SSF54928
C12orf50	160419	genome.wustl.edu	37	12	88380176	88380176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_152589.1	-1	predicted	p.V279M	1.000	193	0%	194	17.5%	0	-	benign(0.203)	deleterious(0)	neutral(0.464)	NULL
GALNT4	8693	genome.wustl.edu	37	12	89917242	89917242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003774.3	-1	reviewed	p.H362R	0.999	157	0%	117	34.2%	46	43.4%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Nucleotide-diphospho-sugar transferases
BTBD11	121551	genome.wustl.edu	37	12	108004113	108004113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001018072.1	+1	validated	p.I597T	1.000	141	0%	123	16.3%	4	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	superfamily_Ankyrin repeat
WSCD2	9671	genome.wustl.edu	37	12	108589662	108589662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014653.2	+1	validated	p.R18H	1.000	266	0%	222	16.7%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SSH1	54434	genome.wustl.edu	37	12	109192929	109192929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018984.3	-1	validated	p.R399H	1.000	35	0%	21	23.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
UNG	7374	genome.wustl.edu	37	12	109540693	109540693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_080911.1	+1	reviewed	p.H195Y	1.000	142	0%	134	35.1%	5	40%	benign(0.341)	tolerated(0.1)	neutral(0.394)	HMMPfam_UDG,superfamily_DNA glycosylase
HVCN1	84329	genome.wustl.edu	37	12	111089095	111089095	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001040107.1	-1	validated	p.F190	0.198	104	0%	66	33.3%	7	0%	-	-	-	superfamily_Voltage-gated potassium channels
NAA25	80018	genome.wustl.edu	37	12	112486205	112486205	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_024953.3	-1	reviewed	p.E591Q	1.000	153	0%	124	31.5%	0	-	probably_damaging(0.983)	tolerated(0.59)	neutral(0.433)	HMMPfam_NatB_MDM20
MSI1	4440	genome.wustl.edu	37	12	120796839	120796839	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002442.2	-1	reviewed	p.L140	0.999	5	0.000	8	0.750	30	50%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
GOLGA3	2802	genome.wustl.edu	37	12	133372632	133372632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005895.3	-1	reviewed	p.G759S	0.993	37	0%	31	22.6%	5	40%	benign(0.003)	tolerated(0.73)	neutral(0.002)	NULL
ZNF10	7556	genome.wustl.edu	37	12	133732954	133732954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015394.4	+1	reviewed	p.E374D	1.000	295	0%	300	14.7%	2	0%	possibly_damaging(0.542)	deleterious(0.01)	deleterious(0.589)	superfamily_C2H2 and C2HC zinc fingers
MTMR6	9107	genome.wustl.edu	37	13	25827978	25827980	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004685.3	-1	validated	p.L423in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
STARD13	90627	genome.wustl.edu	37	13	33704321	33704321	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_178006.3	-1	validated	p.R165*	0.008	85	1.2%	84	44%	1	0%	-	-	-	NULL
NBEA	26960	genome.wustl.edu	37	13	35731269	35731269	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015678.4	+1	validated	p.I902M	0.745	306	0%	355	36.6%	0	-	possibly_damaging(0.558)	deleterious(0.01)	deleterious(0.596)	superfamily_ARM repeat
MAB21L1	4081	genome.wustl.edu	37	13	36049381	36049381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005584.4	-1	reviewed	p.R299W	1.000	137	0%	90	11.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Mab-21
FREM2	341640	genome.wustl.edu	37	13	39263884	39263884	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_207361.4	+1	reviewed	p.Q801H	1.000	74	0%	54	13%	0	-	possibly_damaging(0.858)	tolerated(0.07)	deleterious(0.650)	NULL
FREM2	341640	genome.wustl.edu	37	13	39451260	39451260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_207361.4	+1	reviewed	p.D2851Y	1.000	227	0%	194	22.7%	2	50%	possibly_damaging(0.889)	deleterious(0.03)	deleterious(0.714)	NULL
FNDC3A	22862	genome.wustl.edu	37	13	49705294	49705294	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001079673.1	+1	validated	p.R92*	1.000	414	0%	508	11.4%	11	9%	-	-	-	NULL
RNASEH2B	79621	genome.wustl.edu	37	13	51509022	51509022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_024570.2	+1	reviewed	p.G108E	0.996	31	0%	41	17.1%	16	6.2%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_RNase_H2-Ydr279
CLN5	1203	genome.wustl.edu	37	13	77574798	77574798	+	Silent	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006493.2	+1	reviewed	p.T306	0.996	195	0%	163	15.3%	5	40%	-	-	-	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77779466	77779466	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_015057.4	-1	validated	p.F1218	0.998	459	0%	410	36.6%	0	-	-	-	-	HMMPfam_PHR
MBNL2	10150	genome.wustl.edu	37	13	97928589	97928589	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_144778.2	+1	reviewed	p.C34S	1.000	345	0%	344	12.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1
RNF113B	140432	genome.wustl.edu	37	13	98829117	98829117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_178861.4	-1	validated	p.P125L	1.000	53	0%	32	15.6%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
GRTP1	79774	genome.wustl.edu	37	13	113980340	113980340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_024719.2	-1	validated	p.A210V	0.877	65	0%	50	22%	16	18.7%	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
CHD8	57680	genome.wustl.edu	37	14	21883749	21883749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020920.3	-1	reviewed	p.R372Q	1.000	181	0%	215	20%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
OR10G2	26534	genome.wustl.edu	37	14	22102377	22102377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001005466.1	-1	validated	p.V208I	0.276	81	64.2%	101	88.1%	1	0%	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
EFS	10278	genome.wustl.edu	37	14	23829934	23829934	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005864.2	-1	reviewed	p.L43	0.985	40	0%	30	13.3%	4	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
PSMC6	5706	genome.wustl.edu	37	14	53184802	53184802	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002806.3	+1	reviewed	p.T192R	1.000	184	0%	221	58.8%	39	56.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SOCS4	122809	genome.wustl.edu	37	14	55510841	55510841	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_080867.2	+1	reviewed	p.L361Q	1.000	148	0%	171	11.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
SPTB	6710	genome.wustl.edu	37	14	65271728	65271728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001024858.2	-1	reviewed	p.D77N	1.000	108	0%	108	35.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
ARG2	384	genome.wustl.edu	37	14	68108941	68108941	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001172.3	+1	reviewed	p.P75A	1.000	73	0%	108	62%	12	50%	benign(0)	tolerated(0.7)	neutral(0.002)	HMMPfam_Arginase,superfamily_Arginase/deacetylase
TMEM63C	57156	genome.wustl.edu	37	14	77709340	77709340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020431.2	+1	validated	p.A428T	0.996	34	0%	42	21.4%	0	-	probably_damaging(0.995)	tolerated(0.26)	deleterious(0.492)	HMMPfam_DUF221
SEL1L	6400	genome.wustl.edu	37	14	81970624	81970624	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005065.4	-1	validated	p.Q179*	1.000	104	0%	164	15.2%	6	0%	-	-	-	NULL
TTC8	123016	genome.wustl.edu	37	14	89338740	89338740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_144596.2	+1	reviewed	p.A431T	1.000	151	0%	303	12.2%	82	10.9%	possibly_damaging(0.561)	deleterious(0.01)	deleterious(0.597)	HMMPfam_TPR_2,HMMSmart_TPR,superfamily_SSF48452
RAB42P1	646996	genome.wustl.edu	37	14	90358521	90358521	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000389290	+1	known	p.K121	1.000	14	0%	14	50%	2	0%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM181A	90050	genome.wustl.edu	37	14	94394670	94394670	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_138344.3	+1	predicted	p.F75	0.819	40	0%	32	15.6%	13	7.6%	-	-	-	NULL
PAPOLA	10914	genome.wustl.edu	37	14	97029169	97029169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032632.3	+1	validated	p.T694I	1.000	384	0%	695	10.9%	16	0%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
TRPM1	4308	genome.wustl.edu	37	15	31339455	31339455	+	Splice_Site	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002420.4	-1	reviewed	e13-1	1.000	136	0%	122	41.8%	0	-	-	-	-	-
PGBD4	161779	genome.wustl.edu	37	15	34395598	34395598	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_152595.4	+1	validated	p.W289*	0.059	99	0%	67	41.8%	0	-	-	-	-	NULL
MAP1A	4130	genome.wustl.edu	37	15	43814043	43814043	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002373.5	+1	reviewed	p.V124	1.000	85	0%	40	55%	0	-	-	-	-	NULL
STRC	161497	genome.wustl.edu	37	15	43992657	43992657	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000381686	-1	known	p.S1626C	0.993	84	0%	76	39.5%	0	-	-	-	-	NULL
DUOX1	53905	genome.wustl.edu	37	15	45442849	45442849	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_017434.3	+1	reviewed	p.V946	0.988	40	0%	36	36.1%	6	50%	-	-	-	superfamily_EF-hand
SMAD3	4088	genome.wustl.edu	37	15	67473722	67473722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005902.3	+1	reviewed	p.R268C	1.000	70	0%	35	14.3%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain
GRAMD2	196996	genome.wustl.edu	37	15	72458982	72458982	+	Silent	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001012642.2	-1	validated	p.T178	0.409	62	0%	44	11.4%	0	-	-	-	-	NULL
CSPG4	1464	genome.wustl.edu	37	15	75974769	75974769	+	Silent	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001897.4	-1	reviewed	p.L1605	0.900	11	0%	15	46.7%	5	0%	-	-	-	NULL
FURIN	5045	genome.wustl.edu	37	15	91419549	91419549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002569.2	+1	reviewed	p.R81H	0.508	34	0%	35	11.4%	19	42.1%	benign(0.031)	tolerated(0.2)	neutral(0.051)	superfamily_Prot_inh_propept
C15orf32	145858	genome.wustl.edu	37	15	93015450	93015450	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_153040.2	+1	predicted	p.G24	0.002	113	0%	78	37.2%	0	-	-	-	-	NULL
LRRK1	79705	genome.wustl.edu	37	15	101598252	101598252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_024652.3	+1	validated	p.M1529V	1.000	92	0%	73	12.3%	1	0%	benign(0.156)	deleterious(0.02)	neutral(0.397)	NULL
PTX4	390667	genome.wustl.edu	37	16	1537911	1537911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001013658.1	-1	provisional	p.V63M	0.235	91	0%	77	14.3%	0	-	possibly_damaging(0.697)	deleterious(0.01)	deleterious(0.655)	NULL
PPL	5493	genome.wustl.edu	37	16	4935090	4935090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002705.4	-1	reviewed	p.A1189V	1.000	130	0%	102	10.8%	15	13.3%	probably_damaging(0.999)	tolerated(0.7)	deleterious(0.492)	NULL
CIITA	4261	genome.wustl.edu	37	16	11002910	11002910	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000246.3	+1	reviewed	p.A894	0.834	71	0%	46	17.4%	2	0%	-	-	-	superfamily_RNI-like
ZC3H7A	29066	genome.wustl.edu	37	16	11876172	11876172	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014153.2	-1	provisional	p.Q13H	1.000	197	0%	217	38.2%	4	75%	benign(0.011)	tolerated(0.24)	neutral(0.038)	NULL
BFAR	51283	genome.wustl.edu	37	16	14755894	14755894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_016561.2	+1	validated	p.S310F	0.001	146	0%	159	42.8%	8	25%	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
OTOA	146183	genome.wustl.edu	37	16	21721417	21721417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_144672.3	+1	reviewed	p.H438R	1.000	68	0%	49	14.3%	0	-	benign(0.025)	tolerated(0.35)	neutral(0.022)	NULL
CACNG3	10368	genome.wustl.edu	37	16	24372969	24372969	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006539.2	+1	reviewed	p.R245*	1.000	247	0%	233	15.9%	0	-	-	-	-	NULL
SEZ6L2	26470	genome.wustl.edu	37	16	29909192	29909192	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_201575.2	-1	validated	p.E65Q	0.999	80	0%	58	34.5%	17	52.9%	unknown(0)	deleterious(0)	-	NULL
PRR14	78994	genome.wustl.edu	37	16	30667468	30667468	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_024031.2	+1	provisional	p.R532*	1.000	47	0%	28	25%	40	7.5%	-	-	-	NULL
NUP93	9688	genome.wustl.edu	37	16	56782202	56782202	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014669.3	+1	validated	p.Q15*	1.000	82	0%	70	32.9%	10	20%	-	-	-	NULL
NLRC5	84166	genome.wustl.edu	37	16	57059749	57059749	+	Silent	SNP	C	C	T	rs184144107	by1000genomes	TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032206.3	+1	validated	p.N298	0.009	145	0%	118	11%	9	0%	-	-	-	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
KATNB1	10300	genome.wustl.edu	37	16	57786832	57786832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005886.2	+1	reviewed	p.D283N	1.000	19	0%	14	50%	39	46.1%	benign(0)	tolerated(1)	-	superfamily_WD40_like
CNOT1	23019	genome.wustl.edu	37	16	58620653	58620653	+	Splice_Site	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_016284.3	-1	validated	e6-1	1.000	31	0%	25	20%	0	-	-	-	-	-
CTCF	10664	genome.wustl.edu	37	16	67645326	67645326	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006565.2	+1	reviewed	p.Y197*	1.000	180	0%	160	36.9%	5	0%	-	-	-	NULL
CTCF	10664	genome.wustl.edu	37	16	67645327	67645327	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006565.2	+1	reviewed	p.Q198*	1.000	182	0%	160	36.2%	5	0%	-	-	-	NULL
NFAT5	10725	genome.wustl.edu	37	16	69724931	69724931	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_138713.2	+1	reviewed	p.K621N	1.000	313	0%	303	34%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AARS	16	genome.wustl.edu	37	16	70310477	70310477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001605.2	-1	reviewed	p.E131K	0.999	115	0%	129	44.2%	11	63.6%	possibly_damaging(0.445)	deleterious(0.04)	deleterious(0.494)	HMMPfam_tRNA-synt_2c,superfamily_SSF55681
SF3B3	23450	genome.wustl.edu	37	16	70569300	70569300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_012426.4	+1	reviewed	p.R268C	1.000	520	0%	588	15.8%	15	6.6%	possibly_damaging(0.726)	deleterious(0.04)	deleterious(0.613)	NULL
ZFHX3	463	genome.wustl.edu	37	16	72993947	72993947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006885.3	-1	reviewed	p.P33H	1.000	67	0%	42	11.9%	2	50%	unknown(0)	-	-	NULL
ANKRD11	29123	genome.wustl.edu	37	16	89347301	89347301	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_013275.4	-1	validated	p.F1883	0.995	67	0%	67	32.8%	9	33.3%	-	-	-	NULL
ANKRD11	29123	genome.wustl.edu	37	16	89351374	89351374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_013275.4	-1	validated	p.H526Y	0.991	34	0%	32	34.4%	6	50%	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	superfamily_Ankyrin repeat
ZMYND15	84225	genome.wustl.edu	37	17	4647529	4647529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001136046.1	+1	provisional	p.V514M	0.982	148	0%	84	32.1%	3	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
ZNF594	84622	genome.wustl.edu	37	17	5085301	5085301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032530.1	-1	validated	p.E751K	0.176	461	0%	418	38.3%	0	-	benign(0.244)	deleterious(0.01)	neutral(0.430)	superfamily_SSF57667
PFAS	5198	genome.wustl.edu	37	17	8171997	8171997	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_012393.2	+1	reviewed	p.D1177H	0.999	26	0%	18	33.3%	36	47.2%	benign(0.104)	tolerated(0.12)	neutral(0.269)	superfamily_Class I glutamine amidotransferase-like
PFAS	5198	genome.wustl.edu	37	17	8172026	8172026	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_012393.2	+1	reviewed	p.Q1186	0.042	19	0%	11	36.4%	34	11.7%	-	-	-	superfamily_Class I glutamine amidotransferase-like
MYH8	4626	genome.wustl.edu	37	17	10301856	10301856	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002472.2	-1	reviewed	p.Q1361	1.000	240	0%	237	35.9%	0	-	-	-	-	HMMPfam_Myosin_tail_1
ALDH3A1	218	genome.wustl.edu	37	17	19646691	19646691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000691.4	-1	reviewed	p.A83V	0.000	102	0%	65	20%	64	15.6%	benign(0.408)	tolerated(0.14)	neutral(0.382)	HMMPfam_Aldedh,superfamily_ALDH-like
NF1	4763	genome.wustl.edu	37	17	29654613	29654613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001042492.2	+1	reviewed	p.E1789K	1.000	166	0%	164	45.1%	1	100%	benign(0.107)	deleterious(0.01)	neutral(0.414)	NULL
CCR7	1236	genome.wustl.edu	37	17	38715169	38715170	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001838.2	-1	reviewed	p.V13fs	0.991:0.989	-	-	-	-	-	-	-	-	-	NULL
KRT39	390792	genome.wustl.edu	37	17	39114913	39114913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_213656.3	-1	reviewed	p.K472N	1.000	383	0%	411	14.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KRT33A	3883	genome.wustl.edu	37	17	39502770	39502770	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004138.2	-1	reviewed	p.L343V	1.000	169	0%	115	34.8%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Filament
KRT17	3872	genome.wustl.edu	37	17	39780553	39780553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000422.2	-1	reviewed	p.G70D	0.880	52	0%	31	12.9%	20	0%	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	NULL
FZD2	2535	genome.wustl.edu	37	17	42635704	42635704	+	Silent	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001466.2	+1	reviewed	p.L216	1.000	20	0%	20	45%	18	55.5%	-	-	-	NULL
PLEKHM1	9842	genome.wustl.edu	37	17	43522967	43522967	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014798.2	-1	reviewed	p.Q902	1.000	108	0%	66	33.3%	3	33.3%	-	-	-	NULL
PLEKHM1	9842	genome.wustl.edu	37	17	43552641	43552641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014798.2	-1	reviewed	p.S250P	1.000	86	0%	79	15.2%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ITGB3	3690	genome.wustl.edu	37	17	45363782	45363782	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000212.2	+1	reviewed	p.V257	1.000	160	0%	104	42.3%	0	-	-	-	-	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like
KPNB1	3837	genome.wustl.edu	37	17	45753824	45753824	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000290158	+1	known	p.L654	1.000	82	0%	100	42%	56	53.5%	-	-	-	superfamily_ARM repeat
CDK5RAP3	80279	genome.wustl.edu	37	17	46053334	46053334	+	Silent	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_176096.1	+1	reviewed	p.E251	1.000	47	4.3%	40	10%	168	0%	-	-	-	HMMPfam_DUF773
NFE2L1	4779	genome.wustl.edu	37	17	46136797	46136797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003204.2	+1	validated	p.R705C	0.976	91	0%	63	12.7%	125	9.6%	benign(0.217)	deleterious(0)	neutral(0.466)	HMMSmart_SM00338,HMMPfam_bZIP_2
WFIKKN2	124857	genome.wustl.edu	37	17	48917271	48917271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_175575.5	+1	reviewed	p.A208S	0.003	65	0%	39	10.3%	0	-	benign(0)	tolerated(0.48)	neutral(0.011)	superfamily_SSF48726
ENSG00000188755	0	genome.wustl.edu	37	17	60351161	60351161	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000339120	-1	known	p.Q52*	0.001	114	0%	64	12.5%	0	-	-	-	-	NULL
TANC2	26115	genome.wustl.edu	37	17	61498668	61498668	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_025185.3	+1	validated	p.S1775	1.000	230	0%	226	22.1%	0	-	-	-	-	NULL
RGS9	8787	genome.wustl.edu	37	17	63206717	63206717	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003835.3	+1	reviewed	p.I467	1.000	107	0%	94	37.2%	1	0%	-	-	-	NULL
UNK	85451	genome.wustl.edu	37	17	73818574	73818574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001080419.1	+1	provisional	p.N694K	1.000	50	0%	31	12.9%	7	14.2%	possibly_damaging(0.496)	tolerated(0.17)	neutral(0.225)	NULL
FBF1	85302	genome.wustl.edu	37	17	73915839	73915839	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001080542.1	-1	provisional	p.R668fs	0.310	-	-	-	-	-	-	-	-	-	NULL
QRICH2	84074	genome.wustl.edu	37	17	74288462	74288462	+	Silent	SNP	T	T	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032134.1	-1	provisional	p.A616	0.000	75	0%	74	20.3%	9	0%	-	-	-	NULL
QRICH2	84074	genome.wustl.edu	37	17	74288463	74288463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032134.1	-1	provisional	p.A616V	0.000	75	0%	75	21.3%	9	0%	benign(0)	tolerated(0.84)	neutral(0.001)	NULL
DNAH17	8632	genome.wustl.edu	37	17	76499007	76499007	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000389840	-1	known	p.E1677	0.999	14	0%	19	57.9%	0	-	-	-	-	NULL
FOXK2	3607	genome.wustl.edu	37	17	80529717	80529717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004514.3	+1	reviewed	p.Y294H	0.996	90	0%	81	18.5%	7	14.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
MC2R	4158	genome.wustl.edu	37	18	13885368	13885368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000529.2	-1	reviewed	p.F50L	0.057	78	0%	66	40.9%	0	-	benign(0)	tolerated(0.5)	neutral(0.010)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MIB1	57534	genome.wustl.edu	37	18	19429276	19429276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020774.2	+1	validated	p.A838V	1.000	214	0%	208	14.4%	2	50%	benign(0.001)	tolerated(0.29)	neutral(0.029)	HMMSmart_RING,superfamily_SSF57850
FAM59A	64762	genome.wustl.edu	37	18	29850243	29850243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_022751.1	-1	provisional	p.A557V	0.137	51	0%	68	13.2%	4	0%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
FAM59A	64762	genome.wustl.edu	37	18	29867530	29867530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_022751.1	-1	provisional	p.R344C	1.000	140	0%	149	18.1%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SMAD2	4087	genome.wustl.edu	37	18	45372165	45372165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001003652.2	-1	reviewed	p.G335E	1.000	143	0%	160	33.8%	19	47.3%	possibly_damaging(0.74)	deleterious(0.02)	deleterious(0.654)	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain
DCC	1630	genome.wustl.edu	37	18	51057016	51057016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005215.3	+1	reviewed	p.A1446V	1.000	151	0%	177	14.7%	0	-	possibly_damaging(0.482)	tolerated(0.08)	neutral(0.460)	NULL
NARS	4677	genome.wustl.edu	37	18	55276596	55276596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004539.3	-1	validated	p.G191D	1.000	166	0%	155	14.8%	177	15.2%	possibly_damaging(0.924)	tolerated(0.12)	deleterious(0.633)	HMMPfam_tRNA_anti,superfamily_Nucleic_acid_OB
ZNF532	55205	genome.wustl.edu	37	18	56587677	56587677	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018181.4	+1	validated	p.Q720*	0.998	259	0.4%	187	38%	5	40%	-	-	-	NULL
NETO1	81832	genome.wustl.edu	37	18	70417697	70417697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_138966.2	-1	reviewed	p.Q381K	1.000	253	0%	260	42.7%	0	-	benign(0)	tolerated(1)	-	NULL
TJP3	27134	genome.wustl.edu	37	19	3728407	3728407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014428.1	+1	provisional	p.A12T	0.000	23	0%	19	21.1%	0	-	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
PLIN5	440503	genome.wustl.edu	37	19	4529803	4529803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001013706.2	-1	validated	p.S111L	0.995	63	0%	30	16.7%	2	100%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_Perilipin
CATSPERD	257062	genome.wustl.edu	37	19	5754211	5754211	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_152784.3	+1	validated	p.L411F	0.008	178	0%	217	46.5%	0	-	possibly_damaging(0.815)	deleterious(0)	deleterious(0.752)	NULL
CRB3	92359	genome.wustl.edu	37	19	6466977	6466977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_174881.2	+1	reviewed	p.E106K	0.998	74	0%	67	41.8%	52	40.3%	possibly_damaging(0.609)	deleterious(0)	deleterious(0.655)	NULL
SH2D3A	10045	genome.wustl.edu	37	19	6759643	6759643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005490.2	-1	validated	p.A153V	0.644	178	0%	125	12.8%	11	0%	benign(0.009)	tolerated(0.06)	neutral(0.323)	NULL
OR2Z1	284383	genome.wustl.edu	37	19	8841568	8841568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001004699.1	+1	provisional	p.Y60H	1.000	119	0%	128	14.1%	0	-	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MUC16	94025	genome.wustl.edu	37	19	9057186	9057186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_024690.2	-1	validated	p.S10087F	0.000	123	0%	153	37.3%	0	-	unknown(0)	-	-	NULL
ELOF1	84337	genome.wustl.edu	37	19	11664859	11664859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032377.3	-1	validated	p.V52M	0.978	373	0%	227	13.2%	57	14%	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	HMMPfam_Elf1
CACNA1A	773	genome.wustl.edu	37	19	13370418	13370418	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001127222.1	-1	reviewed	p.L1450	1.000	46	0%	32	15.6%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SYDE1	85360	genome.wustl.edu	37	19	15224597	15224597	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_033025.4	+1	provisional	p.H677	1.000	98	0%	42	14.3%	9	0%	-	-	-	NULL
NWD1	284434	genome.wustl.edu	37	19	16918919	16918919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001007525.2	+1	validated	p.R1285H	0.180	68	0%	68	14.7%	7	14.2%	possibly_damaging(0.937)	tolerated(0.06)	deleterious(0.706)	superfamily_WD40 repeat-like
LRRC25	126364	genome.wustl.edu	37	19	18507465	18507465	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_145256.2	-1	validated	p.A103	0.000	15	0%	10	60%	2	0%	-	-	-	superfamily_SSF52075
ZNF429	353088	genome.wustl.edu	37	19	21719549	21719549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001001415.2	+1	provisional	p.E232K	0.016	143	0%	137	34.3%	1	100%	possibly_damaging(0.436)	tolerated(0.38)	neutral(0.159)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
KIAA0355	9710	genome.wustl.edu	37	19	34818453	34818453	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014686.3	+1	validated	p.D278V	1.000	126	0%	96	16.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0355	9710	genome.wustl.edu	37	19	34819055	34819055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014686.3	+1	validated	p.T368M	1.000	93	0%	68	10.3%	2	0%	possibly_damaging(0.642)	tolerated(0.6)	neutral(0.230)	NULL
UBA2	10054	genome.wustl.edu	37	19	34949693	34949693	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005499.2	+1	validated	p.P422R	1.000	150	0%	121	31.4%	12	16.6%	possibly_damaging(0.674)	deleterious(0.03)	deleterious(0.604)	superfamily_MoeB
FXYD7	53822	genome.wustl.edu	37	19	35642229	35642229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_022006.1	+1	reviewed	p.I45T	0.986	263	0%	233	15.9%	0	-	benign(0.007)	deleterious(0.01)	neutral(0.406)	HMMPfam_ATP1G1_PLM_MAT8
FFAR2	2867	genome.wustl.edu	37	19	35941333	35941333	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005306.2	+1	reviewed	p.N239	0.935	166	0%	155	44.5%	1	100%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
APLP1	333	genome.wustl.edu	37	19	36370034	36370034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001024807.1	+1	reviewed	p.A591V	0.984	26	0%	21	38.1%	4	25%	benign(0.002)	tolerated(1)	-	NULL
YIF1B	90522	genome.wustl.edu	37	19	38798306	38798306	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001039672.2	-1	validated	p.Y209C	1.000	20	0%	12	33.3%	105	44.7%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_YIF1
RYR1	6261	genome.wustl.edu	37	19	38964084	38964084	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000540.2	+1	reviewed	p.S1278C	1.000	73	0%	42	19%	0	-	probably_damaging(0.981)	-	-	NULL
ZNF546	339327	genome.wustl.edu	37	19	40519604	40519604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_178544.3	+1	validated	p.L143F	0.111	50	0%	52	13.5%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
ZNF180	7733	genome.wustl.edu	37	19	44988631	44988631	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_013256.3	-1	validated	p.Q50E	0.958	93	0%	73	28.8%	0	-	benign(0.273)	tolerated(0.09)	neutral(0.326)	NULL
CEACAM19	56971	genome.wustl.edu	37	19	45179693	45179693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020219.3	+1	validated	p.R192I	0.996	181	0%	168	15.5%	0	-	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
CBLC	23624	genome.wustl.edu	37	19	45303699	45303699	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_012116.3	+1	validated	p.*475L	0.146	43	0%	23	52.2%	10	40%	-	-	-	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47424529	47424529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004491.4	+1	reviewed	p.S866F	1.000	182	0%	167	43.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DHX34	9704	genome.wustl.edu	37	19	47856590	47856590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014681.5	+1	reviewed	p.D101E	1.000	106	0%	123	13%	6	33.3%	possibly_damaging(0.64)	tolerated(0.15)	neutral(0.465)	NULL
PTOV1	53635	genome.wustl.edu	37	19	50363335	50363335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000221557	+1	known	p.S323L	1.000	51	0%	30	40%	521	38%	benign(0.202)	deleterious(0)	neutral(0.464)	NULL
ZNF701	55762	genome.wustl.edu	37	19	53086496	53086496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018260.2	+1	validated	p.S395L	0.022	286	0.3%	224	39.3%	3	33.3%	benign(0.018)	deleterious(0.02)	neutral(0.384)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes
ZNF701	55762	genome.wustl.edu	37	19	53086580	53086580	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018260.2	+1	validated	p.S423*	0.003	216	0%	176	34.1%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes
ZNF347	84671	genome.wustl.edu	37	19	53644595	53644595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032584.2	-1	validated	p.A496S	0.000	400	0%	362	19.6%	1	0%	benign(0.002)	tolerated(0.4)	neutral(0.016)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DPRX	503834	genome.wustl.edu	37	19	54139865	54139865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001012728.1	+1	validated	p.H67Y	0.165	240	0.4%	221	35.7%	0	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
LILRB3	11025	genome.wustl.edu	37	19	54725731	54725731	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001081450.1	-1	reviewed	p.H209	0.001	32	0%	27	37%	0	-	-	-	-	superfamily_Immunoglobulin
NLRP13	126204	genome.wustl.edu	37	19	56413470	56413470	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_176810.2	-1	validated	p.L907P	0.389	271	0%	263	14.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52047
ZNF274	10782	genome.wustl.edu	37	19	58718566	58718566	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000424679	+1	known	p.V246fs	0.990	-	-	-	-	-	-	-	-	-	HMMPfam_SCAN,HMMSmart_SM00431
IDH3B	3420	genome.wustl.edu	37	20	2640681	2640681	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006899.2	-1	reviewed	p.E304Q	1.000	176	0%	170	38.2%	82	31.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
C20orf141	128653	genome.wustl.edu	37	20	2795931	2795931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_080739.2	+1	validated	p.R34H	0.000	95	0%	68	44.1%	0	-	benign(0.365)	tolerated(0.2)	neutral(0.165)	NULL
VPS16	64601	genome.wustl.edu	37	20	2841918	2841918	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_022575.2	+1	reviewed	p.Q267H	1.000	82	0%	51	33.3%	39	56.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Vps16_N
FOXA2	3170	genome.wustl.edu	37	20	22564874	22564874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_021784.4	-1	reviewed	p.G15R	1.000	19	0%	21	23.8%	18	66.6%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
TOP1	7150	genome.wustl.edu	37	20	39746810	39746810	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003286.2	+1	reviewed	p.P608	0.982	84	0%	74	47.3%	23	52.1%	-	-	-	superfamily_DNA breaking-rejoining enzymes,HMMSmart_SM00435,HMMPfam_Topoisom_I
ZFP64	55734	genome.wustl.edu	37	20	50705140	50705140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_199427.2	-1	validated	p.S340N	1.000	85	0%	67	23.9%	4	25%	possibly_damaging(0.463)	tolerated(0.17)	neutral(0.211)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TSHZ2	128553	genome.wustl.edu	37	20	51870060	51870060	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_173485.4	+1	validated	p.L21	0.990	105	0%	103	41.7%	0	-	-	-	-	NULL
SS18L1	26039	genome.wustl.edu	37	20	60736530	60736530	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_198935.1	+1	validated	p.L90	1.000	10	0.000	6	0.667	9	22.2%	-	-	-	NULL
PCMTD2	55251	genome.wustl.edu	37	20	62904609	62904609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018257.2	+1	validated	p.R248C	1.000	119	0%	97	13.4%	6	16.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ATP5J	522	genome.wustl.edu	37	21	27102015	27102015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001003701.1	-1	reviewed	p.A39T	1.000	74	0%	58	10.3%	125	20.8%	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	HMMPfam_ATP-synt_F6
CLDN8	9073	genome.wustl.edu	37	21	31587725	31587725	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_199328.2	-1	reviewed	p.L173	0.002	110	0%	137	10.2%	0	-	-	-	-	HMMPfam_PMP22_Claudin
TIAM1	7074	genome.wustl.edu	37	21	32513461	32513461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003253.2	-1	validated	p.A1250V	0.014	132	0%	91	12.1%	1	0%	benign(0.184)	tolerated(0.2)	neutral(0.066)	superfamily_SSF50729
SYNJ1	8867	genome.wustl.edu	37	21	34038274	34038274	+	Silent	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003895.3	-1	validated	p.A708	0.354	139	0%	124	15.3%	0	-	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
SON	6651	genome.wustl.edu	37	21	34923934	34923934	+	Silent	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_138927.1	+1	reviewed	p.S799	0.983	300	1.3%	235	17.4%	12	0%	-	-	-	NULL
BRWD1	54014	genome.wustl.edu	37	21	40568895	40568895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018963.3	-1	reviewed	p.N2034D	0.000	278	0%	286	17.1%	3	33.3%	benign(0.014)	tolerated(0.48)	neutral(0.011)	superfamily_WD40 repeat-like
TMPRSS2	7113	genome.wustl.edu	37	21	42851136	42851136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005656.3	-1	reviewed	p.A216T	0.007	39	0%	32	18.8%	6	0%	possibly_damaging(0.743)	tolerated(0.47)	neutral(0.284)	HMMSmart_SM00202,superfamily_SRCR-like
NDUFV3	4731	genome.wustl.edu	37	21	44323719	44323719	+	Silent	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_021075.3	+1	reviewed	p.P199	0.000	163	0%	166	18.7%	11	9%	-	-	-	NULL
TRPM2	7226	genome.wustl.edu	37	21	45825042	45825042	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_003307.3	+1	reviewed	p.D852	0.564	4	0.000	7	0.857	3	33.3%	-	-	-	HMMPfam_Ion_trans
SERPIND1	3053	genome.wustl.edu	37	22	21141329	21141329	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000185.3	+1	reviewed	p.R492T	0.951	203	0%	142	40.1%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SNAP29	9342	genome.wustl.edu	37	22	21242113	21242113	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004782.3	+1	reviewed	p.R256*	0.995	138	0%	109	16.5%	4	0%	-	-	-	HMMPfam_SNARE,HMMSmart_t_SNARE
ZNF280B	140883	genome.wustl.edu	37	22	22842983	22842983	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_080764.2	-1	reviewed	p.K247	0.678	306	0%	317	36.6%	0	-	-	-	-	NULL
CABIN1	23523	genome.wustl.edu	37	22	24459602	24459602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_012295.2	+1	reviewed	p.A626V	1.000	106	0%	79	17.7%	10	10%	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	HMMSmart_TPR,superfamily_SSF48452
MYO18B	84700	genome.wustl.edu	37	22	26222380	26222380	+	Silent	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032608.5	+1	reviewed	p.L900	0.996	134	0%	173	48%	0	-	-	-	-	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
THOC5	8563	genome.wustl.edu	37	22	29907222	29907222	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001002877.1	-1	validated	p.L621	1.000	167	0%	169	17.2%	64	9.3%	-	-	-	NULL
EP300	2033	genome.wustl.edu	37	22	41574607	41574607	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001429.3	+1	reviewed	p.Q2298*	1.000	160	0%	151	15.9%	124	18.5%	-	-	-	NULL
RANGAP1	5905	genome.wustl.edu	37	22	41657482	41657482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_002883.2	-1	reviewed	p.D195N	0.997	46	0%	57	35.1%	35	34.2%	probably_damaging(0.979)	deleterious(0.05)	deleterious(0.767)	superfamily_SSF52047
ASMTL	8623	genome.wustl.edu	37	X	1546993	1546993	+	Silent	SNP	C	C	T	rs147986045	by1000genomes	TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_004192.3	-1	reviewed	p.G177	0.856	11	0%	15	46.7%	16	50%	-	-	-	HMMPfam_Maf,superfamily_Maf/Ham1
KAL1	3730	genome.wustl.edu	37	X	8553319	8553319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000216.2	-1	reviewed	p.R282H	1.000	138	0%	151	11.9%	1	0%	possibly_damaging(0.676)	tolerated(0.31)	neutral(0.268)	superfamily_FN_III-like
TBL1X	6907	genome.wustl.edu	37	X	9659749	9659749	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001139466.1	+1	reviewed	p.S249	0.615	49	0%	29	34.5%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
SYAP1	94056	genome.wustl.edu	37	X	16775342	16775342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_032796.3	+1	validated	p.D281H	0.952	128	0%	134	45.5%	15	100%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
CXorf23	256643	genome.wustl.edu	37	X	19971141	19971141	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_198279.3	-1	validated	p.Q532*	1.000	214	0%	210	37.1%	2	0%	-	-	-	NULL
YY2	404281	genome.wustl.edu	37	X	21874611	21874611	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_206923.3	+1	reviewed	p.S3	0.029	197	0%	140	14.3%	0	-	-	-	-	NULL
TAB3	257397	genome.wustl.edu	37	X	30872918	30872918	+	Silent	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_152787.3	-1	reviewed	p.P288	0.997	93	0%	81	14.8%	0	-	-	-	-	NULL
ZNF182	7569	genome.wustl.edu	37	X	47835841	47835841	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006962.1	-1	reviewed	p.K549Q	1.000	207	0%	157	38.2%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PIM2	11040	genome.wustl.edu	37	X	48772300	48772300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_006875.3	-1	reviewed	p.D198N	1.000	82	0%	44	31.8%	43	0%	possibly_damaging(0.545)	tolerated(0.1)	deleterious(0.471)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
OTUD5	55593	genome.wustl.edu	37	X	48792074	48792074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_017602.3	-1	reviewed	p.R274W	0.997	297	0%	286	14%	49	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OTU,superfamily_Cysteine proteinases
FOXP3	50943	genome.wustl.edu	37	X	49110513	49110513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_014009.3	-1	reviewed	p.G278C	0.820	25	0%	24	54.2%	11	0%	possibly_damaging(0.949)	tolerated(0.05)	deleterious(0.738)	NULL
GPR173	54328	genome.wustl.edu	37	X	53106091	53106092	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018969.5	+1	reviewed	p.I97fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GNL3L	54552	genome.wustl.edu	37	X	54577482	54577482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_019067.5	+1	reviewed	p.K288E	1.000	152	0%	122	23%	3	0%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	HMMPfam_MMR_HSR1,superfamily_SSF52540
AR	367	genome.wustl.edu	37	X	66942693	66942693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_000044.2	+1	reviewed	p.Q825R	1.000	122	0%	137	12.4%	1	0%	possibly_damaging(0.879)	deleterious(0)	deleterious(0.787)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
EDA	1896	genome.wustl.edu	37	X	69253328	69253328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001399.4	+1	reviewed	p.E292K	1.000	171	0%	164	42.1%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TNF,superfamily_TNF-like
AWAT2	158835	genome.wustl.edu	37	X	69263053	69263053	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001002254.1	-1	reviewed	p.L171	1.000	43	0%	30	26.7%	0	-	-	-	-	HMMPfam_DAGAT
BMP2KL	347359	genome.wustl.edu	37	X	73405798	73405798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	ENST00000373488	+1	known	p.K15R	1.000	42	0%	38	18.4%	0	-	benign(0.006)	tolerated(0.06)	neutral(0.323)	NULL
NXF2	56001	genome.wustl.edu	37	X	101581387	101581387	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_017809.3	+1	reviewed	p.E614Q	0.000	292	0%	251	33.9%	0	-	benign(0.003)	tolerated(0.4)	neutral(0.016)	HMMPfam_TAP_C,HMMSmart_TAP_C,superfamily_UBA_like
KIAA1210	57481	genome.wustl.edu	37	X	118223410	118223410	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_020721.1	-1	validated	p.E595Q	0.002	272	0%	214	37.4%	0	-	possibly_damaging(0.812)	-	-	NULL
STAG2	10735	genome.wustl.edu	37	X	123227872	123227872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001042749.1	+1	validated	p.R1195C	1.000	164	0%	188	13.3%	15	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
MAGEC1	9947	genome.wustl.edu	37	X	140993418	140993418	+	Silent	SNP	C	C	A	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005462.4	+1	reviewed	p.S76	0.975	1096	0%	837	25.4%	0	-	-	-	-	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140993946	140993946	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005462.4	+1	reviewed	p.F252	0.208	2418	0%	1824	16.2%	0	-	-	-	-	NULL
SLITRK2	84631	genome.wustl.edu	37	X	144905469	144905469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_001144003.2	+1	reviewed	p.L509P	0.998	146	0%	106	14.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00369,superfamily_L domain-like
CXorf40A	91966	genome.wustl.edu	37	X	148628451	148628451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_178124.4	+1	validated	p.K140N	0.010	115	0%	106	16%	14	14.2%	possibly_damaging(0.895)	deleterious(0.01)	deleterious(0.758)	NULL
MAMLD1	10046	genome.wustl.edu	37	X	149638875	149638875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_005491.3	+1	reviewed	p.P344S	1.000	111	0%	77	16.9%	2	0%	probably_damaging(0.995)	tolerated(0.19)	deleterious(0.507)	NULL
GABRQ	55879	genome.wustl.edu	37	X	151806718	151806718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0C9-01A-11W-A027-09	TCGA-BK-A0C9-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0eed8eb4-5cc7-452a-bf14-a6064ddad3d2	a9a993b0-2321-4131-ac05-bdfb27c49e11	NM_018558.2	+1	reviewed	p.A21V	0.845	87	0%	52	11.5%	0	-	possibly_damaging(0.842)	deleterious(0)	deleterious(0.766)	NULL
