Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
MST1P2	11209	broad.mit.edu	37	1	16974216	16974216	+	RNA	SNP	G	C	C	rs140637426		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:16974216G>C	uc009vow.2	+	5		c.1026G>C			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Intron|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Intron|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Intron|MST1P2_uc001azm.3_Intron					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						AGGCGGGTTTGGTCCCAGCCC	0.662000													5	12					0	0	0	0
RNF220	55182	broad.mit.edu	37	1	44878151	44878151	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:44878151G>A	uc001clv.1	+	2	742	c.382G>A	c.(382-384)GAC>AAC	p.D128N	RNF220_uc001clw.1_Missense_Mutation_p.D128N	NM_018150	NP_060620	Q5VTB9	RN220_HUMAN	ring finger protein 220	128					protein autoubiquitination	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CTCCACCGAGGACCGGGAGAG	0.552000													25	95					0	0	0	0
C1orf163	65260	broad.mit.edu	37	1	53158471	53158471	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:53158471T>C	uc001cui.1	-	2	215	c.175A>G	c.(175-177)AAG>GAG	p.K59E		NM_023077	NP_075565	Q96BR5	SELR1_HUMAN	hypothetical protein LOC65260	59	Sel1-like 1.						binding				0						CAGTTAAACTTCAACACCTTG	0.498000													22	67					0	0	0	0
HOOK1	51361	broad.mit.edu	37	1	60309235	60309235	+	Silent	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:60309235A>G	uc009wad.2	+	10	855	c.753A>G	c.(751-753)CAA>CAG	p.Q251Q	HOOK1_uc001czo.2_Silent_p.Q251Q|HOOK1_uc001czp.2_RNA|HOOK1_uc010oor.1_Silent_p.Q209Q	NM_015888	NP_056972	Q9UJC3	HOOK1_HUMAN	hook homolog 1	251	Potential.|Sufficient for interaction with microtubules.				early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|multicellular organismal development|protein transport	FHF complex|microtubule	identical protein binding			ovary(1)|breast(1)	2	all_cancers(7;0.000129)					TTCATGCACAATTACAACTAG	0.333000													14	31					0	0	0	0
WDR63	126820	broad.mit.edu	37	1	85547058	85547058	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:85547058C>A	uc001dkt.2	+	4	436	c.245C>A	c.(244-246)GCT>GAT	p.A82D	WDR63_uc009wcl.2_Missense_Mutation_p.A82D	NM_145172	NP_660155	Q8IWG1	WDR63_HUMAN	WD repeat domain 63	82								p.A82D(1)		upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				all cancers(265;0.00391)|Epithelial(280;0.00922)|Colorectal(170;0.166)		CGCAACAGAGCTGCAGTATCT	0.368000													13	50					0.000308642	0.000329403	1	0
SASS6	163786	broad.mit.edu	37	1	100591488	100591488	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:100591488T>C	uc001dsu.2	-	2	217	c.76A>G	c.(76-78)ATA>GTA	p.I26V	SASS6_uc009wdz.2_5'UTR	NM_194292	NP_919268	Q6UVJ0	SAS6_HUMAN	spindle assembly abnormal protein 6	26					centriole replication	centriole		p.I26V(1)		upper_aerodigestive_tract(1)|ovary(1)	2		all_epithelial(167;4.58e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.085)|all cancers(265;0.139)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.197)		CTCATTCTTATACTTACTCTC	0.333000													22	58					0	0	0	0
VAV3	10451	broad.mit.edu	37	1	108116684	108116684	+	Silent	SNP	T	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:108116684T>A	uc001dvk.1	-	26	2541	c.2487A>T	c.(2485-2487)GGA>GGT	p.G829G	VAV3_uc010ouu.1_Silent_p.G261G|VAV3_uc001dvj.1_Silent_p.G269G|VAV3_uc010ouv.1_Silent_p.G233G|VAV3_uc010ouw.1_Silent_p.G857G	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	829	SH3 2.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		CATTTACTTCTCCTCTCCACC	0.483000													47	209					0	0	0	0
LRIG2	9860	broad.mit.edu	37	1	113657294	113657294	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:113657294C>T	uc001edf.1	+	15	2524	c.2326C>T	c.(2326-2328)CGT>TGT	p.R776C	LRIG2_uc009wgn.1_Missense_Mutation_p.R673C	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	776	Ig-like C2-type 3.|Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		TGGGACAGAACGTGGCCACAT	0.463000													25	104					0	0	0	0
HIPK1	204851	broad.mit.edu	37	1	114499830	114499830	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:114499830C>T	uc001eem.2	+	7	1838	c.1677C>T	c.(1675-1677)TTC>TTT	p.F559F	HIPK1_uc001eel.2_Silent_p.F559F|HIPK1_uc001een.2_Silent_p.F559F|HIPK1_uc001eeo.2_Silent_p.F185F|HIPK1_uc001eep.2_Silent_p.F165F	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	559					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGAGTCCCTTCACTACACATG	0.393000													12	43					0	0	0	0
IGSF3	3321	broad.mit.edu	37	1	117158883	117158883	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:117158883G>A	uc001egr.1	-	3	945	c.240C>T	c.(238-240)CCC>CCT	p.P80P	IGSF3_uc001egq.1_Silent_p.P80P	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	80	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		AGATGGCATAGGGGAAGGAAG	0.557000													6	41					0	0	0	0
CHD1L	9557	broad.mit.edu	37	1	146739091	146739091	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:146739091T>G	uc001epm.3	+	9	965	c.902T>G	c.(901-903)TTT>TGT	p.F301C	uc001epp.2_Intron|CHD1L_uc001epn.3_Missense_Mutation_p.F188C|CHD1L_uc010ozo.1_RNA|CHD1L_uc009wjg.2_RNA|CHD1L_uc009wjh.2_Missense_Mutation_p.F301C|CHD1L_uc010ozp.1_Missense_Mutation_p.F20C|CHD1L_uc001epo.3_Missense_Mutation_p.F97C|CHD1L_uc010ozq.1_Translation_Start_Site|CHD1L_uc009wji.2_Missense_Mutation_p.F20C	NM_004284	NP_004275	Q86WJ1	CHD1L_HUMAN	chromodomain helicase DNA binding protein	301					chromatin remodeling|DNA repair	cytoplasm|nucleus|plasma membrane	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding	p.F301C(1)		ovary(3)|lung(2)|upper_aerodigestive_tract(1)	6	all_hematologic(923;0.0487)					TCAGATGCATTTGAAAATGAG	0.353000													9	28					0	0	0	0
HRNR	388697	broad.mit.edu	37	1	152188024	152188024	+	Silent	SNP	C	T	T	rs142170860		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:152188024C>T	uc001ezt.1	-	3	6157	c.6081G>A	c.(6079-6081)TCG>TCA	p.S2027S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2027	22.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGCCACAGCTCGATGACTGTC	0.562000													85	672					0	0	0	0
APCS	325	broad.mit.edu	37	1	159558171	159558171	+	Silent	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:159558171G>C	uc001ftv.2	+	2	441	c.345G>C	c.(343-345)GTG>GTC	p.V115V		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	115	Pentaxin.				acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					ACATCTGTGTGAGCTGGGAGT	0.433000													12	55					0	0	0	0
ITLN1	55600	broad.mit.edu	37	1	160850996	160850996	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:160850996G>T	uc001fxc.2	-	5	628	c.512C>A	c.(511-513)ACG>AAG	p.T171K		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	171	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding	p.T171T(1)|p.T171K(1)		ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			GCCAGTGTCCGTGCGGTACCT	0.562000													30	92					1.30897e-18	1.46261e-18	1	0
NUF2	83540	broad.mit.edu	37	1	163325191	163325191	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:163325191G>T	uc001gcq.1	+	14	1627	c.1327G>T	c.(1327-1329)GAC>TAC	p.D443Y	NUF2_uc001gcr.1_Missense_Mutation_p.D443Y|NUF2_uc009wvc.1_Missense_Mutation_p.D396Y	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component	443	Interaction with the C-terminus of NDC80 and the SPBC24-SPBC25 subcomplex.|Potential.				cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					GGCAGCAGAGGACTCCTATGC	0.338000													9	25					0.000442599	0.000470262	1	0
ZC3H11A	9877	broad.mit.edu	37	1	203821425	203821425	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:203821425A>G	uc001hac.2	+	20	2947	c.2331A>G	c.(2329-2331)ATA>ATG	p.I777M	ZC3H11A_uc001had.2_Missense_Mutation_p.I777M|ZC3H11A_uc001hae.2_Missense_Mutation_p.I777M|ZC3H11A_uc001haf.2_Missense_Mutation_p.I777M|ZC3H11A_uc010pqm.1_Missense_Mutation_p.I723M	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	777							nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			AGAAACTAATATGGGAGATTT	0.468000													17	42					0	0	0	0
MARK1	4139	broad.mit.edu	37	1	220804398	220804398	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:220804398A>T	uc001hmn.3	+	10	1528	c.931A>T	c.(931-933)ATG>TTG	p.M311L	MARK1_uc009xdw.2_Missense_Mutation_p.M311L|MARK1_uc010pun.1_Missense_Mutation_p.M311L|MARK1_uc001hmm.3_Missense_Mutation_p.M289L	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	311	Protein kinase.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		AGATCGATGGATGAATGTTGG	0.338000													7	22					0	0	0	0
TARBP1	6894	broad.mit.edu	37	1	234596074	234596074	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:234596074G>T	uc001hwd.2	-	7	1468	c.1468C>A	c.(1468-1470)CTA>ATA	p.L490I		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	490					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			GCCTTAGATAGAAACAAAATG	0.373000													12	36					6.31663e-08	6.83344e-08	1	0
OR11L1	391189	broad.mit.edu	37	1	248004351	248004352	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:248004351_248004352GG>TT	uc001idn.1	-	1	847_848	c.847_848CC>AA	c.(847-849)CCA>AAA	p.P283K		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GTTCAGCAGTGGTGTGACCACA	0.441000													17	59					0	0	0	0
OR2M5	127059	broad.mit.edu	37	1	248309150	248309150	+	Missense_Mutation	SNP	G	A	A	rs147580819		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:248309150G>A	uc010pze.1	+	1	701	c.701G>A	c.(700-702)CGT>CAT	p.R234H		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			GGAGAGGGTCGTCGCAAAGCT	0.463000													73	182					0	0	0	0
SFMBT2	57713	broad.mit.edu	37	10	7214579	7214579	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr10:7214579C>T	uc009xio.1	-	18	2120	c.2029G>A	c.(2029-2031)GGG>AGG	p.G677R	SFMBT2_uc001ijn.1_Missense_Mutation_p.G677R|SFMBT2_uc010qay.1_Missense_Mutation_p.G512R	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	677					regulation of transcription, DNA-dependent	nucleus		p.G677R(1)		ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						TTGCTTTCCCCGATGGGGGGC	0.517000													23	52					0	0	0	0
IPMK	253430	broad.mit.edu	37	10	59976032	59976032	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr10:59976032G>A	uc001jkb.2	-	4	743	c.420C>T	c.(418-420)CCC>CCT	p.P140P		NM_152230	NP_689416	Q8NFU5	IPMK_HUMAN	inositol polyphosphate multikinase	140	Substrate binding (By similarity).					nucleus	ATP binding|inositol trisphosphate 6-kinase activity			ovary(1)	1						CCATTATACAGGGCTTATTAA	0.328000													9	38					0	0	0	0
SGPL1	8879	broad.mit.edu	37	10	72631612	72631612	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr10:72631612A>G	uc001jrm.2	+	11	1150	c.928A>G	c.(928-930)ATA>GTA	p.I310V	SGPL1_uc009xqk.2_RNA	NM_003901	NP_003892	O95470	SGPL1_HUMAN	sphingosine-1-phosphate lyase 1	310	Cytoplasmic (Potential).				apoptosis|carboxylic acid metabolic process|ceramide metabolic process|sphingolipid catabolic process	integral to endoplasmic reticulum membrane	carboxy-lyase activity|pyridoxal phosphate binding|sphinganine-1-phosphate aldolase activity				0					Pyridoxal Phosphate(DB00114)	CAAATACAAAATACCCCTTCA	0.433000													19	68					0	0	0	0
DLG5	9231	broad.mit.edu	37	10	79576322	79576322	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr10:79576322G>A	uc001jzk.2	-	20	4082	c.4012C>T	c.(4012-4014)CGG>TGG	p.R1338W	DLG5_uc001jzi.2_Missense_Mutation_p.R93W|DLG5_uc001jzj.2_Missense_Mutation_p.R753W|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Missense_Mutation_p.R942W	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1338					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TCCTTTCTCCGCTCCCCGAGG	0.637000													10	64					0	0	0	0
MBL1P	8512	broad.mit.edu	37	10	81667510	81667510	+	RNA	SNP	C	T	T	rs71481541	by1000genomes	TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr10:81667510C>T	uc001kbf.2	+	3		c.448C>T								Homo sapiens mannose-binding protein-A pseudogene (MBL1P1) mRNA sequence.												0						GTAGTGGTGACGGGGCCTCCA	0.448000													4	76					0	0	0	0
BTAF1	9044	broad.mit.edu	37	10	93740247	93740247	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr10:93740247A>T	uc001khr.2	+	15	1785	c.1687A>T	c.(1687-1689)ATG>TTG	p.M563L	BTAF1_uc001khs.1_Missense_Mutation_p.M233L|BTAF1_uc001kht.1_Missense_Mutation_p.M1L	NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	563	HEAT 4.				negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				ACTGCCTGATATGCTCCGACA	0.373000													11	45					0	0	0	0
PDE6C	5146	broad.mit.edu	37	10	95399902	95399902	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr10:95399902G>A	uc001kiu.3	+	12	1696	c.1558G>A	c.(1558-1560)GGA>AGA	p.G520R		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	520					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				TACAGAGCACGGATTGATTAA	0.403000													30	71					0	0	0	0
IKZF5	64376	broad.mit.edu	37	10	124758050	124758050	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr10:124758050C>G	uc001lha.2	-	3	391	c.92G>C	c.(91-93)GGA>GCA	p.G31A		NM_022466	NP_071911	Q9H5V7	IKZF5_HUMAN	zinc finger protein, subfamily 1A, 5	31					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_neural(114;0.169)|Colorectal(57;0.178)|Glioma(114;0.222)		Colorectal(40;0.0701)|COAD - Colon adenocarcinoma(40;0.0754)		ACTAACTGATCCAGAAATCAT	0.403000													19	61					0	0	0	0
RIC8A	60626	broad.mit.edu	37	11	209939	209939	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:209939T>C	uc001log.2	+	3	990	c.665T>C	c.(664-666)ATG>ACG	p.M222T	BET1L_uc001loe.2_5'Flank|BET1L_uc001lod.2_5'Flank|RIC8A_uc001lof.2_Missense_Mutation_p.M222T|RIC8A_uc001loh.2_Missense_Mutation_p.M215T	NM_021932	NP_068751	Q9NPQ8	RIC8A_HUMAN	resistance to inhibitors of cholinesterase 8	222						cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity				0		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.45e-27)|Epithelial(43;2.94e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.86e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		GAGCGGGCCATGGAGATCCTC	0.587000													7	33					0	0	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587000													5	45					0	0	0	0
OR52A1	23538	broad.mit.edu	37	11	5173296	5173296	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:5173296G>A	uc010qyy.1	-	1	304	c.304C>T	c.(304-306)CAA>TAA	p.Q102*		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AACCACATTTGAAGCAAGCAG	0.458000													8	23					0	0	0	0
NLRP14	338323	broad.mit.edu	37	11	7064378	7064378	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:7064378C>A	uc001mfb.1	+	4	1444	c.1121C>A	c.(1120-1122)GCC>GAC	p.A374D		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	374	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GTGTGCTGGGCCGCTTGTACT	0.453000													38	109					3.21399e-22	3.64253e-22	1	0
SBF2	81846	broad.mit.edu	37	11	10215531	10215531	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:10215531G>A	uc001mib.2	-	2	197	c.59C>T	c.(58-60)TCA>TTA	p.S20L	SBF2_uc001mif.3_5'UTR	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	20	UDENN.				myelination	cytoplasm|membrane	phosphatase activity|protein binding	p.S20L(1)		upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		ACCTTCTCCTGATCCTGTTAA	0.333000													3	15					0	0	0	0
NAV2	89797	broad.mit.edu	37	11	20136232	20136233	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:20136232_20136233CC>TT	uc001mpr.3	+	37	7425_7426	c.7064_7065CC>TT	c.(7063-7065)CCC>CTT	p.P2355L	NAV2_uc001mpp.2_Missense_Mutation_p.P2288L|NAV2_uc009yhx.2_Missense_Mutation_p.P1416L|NAV2_uc009yhz.2_Missense_Mutation_p.P997L|NAV2_uc001mpu.2_Missense_Mutation_p.P790L|NAV2_uc001mpv.2_Missense_Mutation_p.P114L	NM_182964	NP_892009	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 1	2411						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						GAGTGGCCTCCCCTGCTGCAGT	0.614000													13	24					0	0	0	0
C11orf74	119710	broad.mit.edu	37	11	36654876	36654876	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:36654876C>T	uc001mwy.1	+	3	252	c.179C>T	c.(178-180)TCA>TTA	p.S60L	C11orf74_uc010rfd.1_RNA|C11orf74_uc001mww.1_Intron|C11orf74_uc001mwx.1_Intron|C11orf74_uc001mwz.1_Intron|C11orf74_uc010rfe.1_RNA	NM_138787	NP_620142	Q86VG3	CK074_HUMAN	hypothetical protein LOC119710	60											0	all_lung(20;0.226)	all_hematologic(20;0.0118)				ACTGATTCTTCAGAAAACATT	0.338000													8	34					0	0	0	0
AHNAK	79026	broad.mit.edu	37	11	62285788	62285788	+	Silent	SNP	T	C	C	rs146188257		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:62285788T>C	uc001ntl.2	-	5	16401	c.16101A>G	c.(16099-16101)GGA>GGG	p.G5367G	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	5367					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GCAGGCTTGGTCCCCTCAGTG	0.547000													21	70					0	0	0	0
MALAT1	378938	broad.mit.edu	37	11	65266549	65266549	+	RNA	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:65266549T>C	uc010roh.1	+	1		c.1317T>C				NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						GGGCTTCTGCTGAGGGGGCAG	0.478000													21	71					0	0	0	0
CTTN	2017	broad.mit.edu	37	11	70263146	70263146	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:70263146A>G	uc001opv.3	+	8	691	c.485A>G	c.(484-486)TAT>TGT	p.Y162C	CTTN_uc001opu.2_Missense_Mutation_p.Y162C|CTTN_uc001opw.3_Missense_Mutation_p.Y162C	NM_005231	NP_005222	Q14247	SRC8_HUMAN	cortactin isoform a	162	Cortactin 3.					cell cortex|cytoskeleton|lamellipodium|ruffle|soluble fraction	protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(2;4.34e-41)|LUSC - Lung squamous cell carcinoma(11;1.51e-13)|STAD - Stomach adenocarcinoma(18;0.0513)	Lung(977;0.0234)|LUSC - Lung squamous cell carcinoma(976;0.133)		GGCGGCAAGTATGGCGTGCAG	0.582000													26	93					0	0	0	0
CLPB	81570	broad.mit.edu	37	11	72013356	72013356	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:72013356G>A	uc001osj.2	-	11	1299	c.1249C>T	c.(1249-1251)CGA>TGA	p.R417*	CLPB_uc010rqx.1_Nonsense_Mutation_p.R372*|CLPB_uc010rqy.1_Nonsense_Mutation_p.R358*|CLPB_uc001osk.2_Nonsense_Mutation_p.R387*|CLPB_uc009ytg.2_RNA|CLPB_uc010rqz.1_Nonsense_Mutation_p.R216*|CLPB_uc001osi.2_Nonsense_Mutation_p.R25*	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	417					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						ACCTCGTGTCGCTCCTGGAAC	0.522000													9	56					0	0	0	0
C2CD3	26005	broad.mit.edu	37	11	73803532	73803532	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:73803532C>T	uc001ouu.2	-	19	3673	c.3446G>A	c.(3445-3447)GGA>GAA	p.G1149E		NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1149						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					GGTCTGTATTCCCACATCCTC	0.423000													9	49					0	0	0	0
PRKRIR	5612	broad.mit.edu	37	11	76063019	76063019	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:76063019T>A	uc001oxh.1	-	5	1175	c.1175A>T	c.(1174-1176)CAT>CTT	p.H392L	PRKRIR_uc010rrz.1_Missense_Mutation_p.H217L	NM_004705	NP_004696	O43422	P52K_HUMAN	protein-kinase, interferon-inducible double	392					negative regulation of cell proliferation|response to stress|signal transduction		DNA binding|metal ion binding|protein dimerization activity			ovary(2)|pancreas(1)	3						TGGTGATCGATGGAAAAAAGA	0.378000													10	36					0	0	0	0
DLG2	1740	broad.mit.edu	37	11	83874509	83874509	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:83874509C>T	uc001paj.2	-	4	607	c.304G>A	c.(304-306)GAG>AAG	p.E102K	DLG2_uc001pai.2_Missense_Mutation_p.E51K|DLG2_uc010rsy.1_Missense_Mutation_p.E69K|DLG2_uc010rsz.1_Missense_Mutation_p.E102K|DLG2_uc010rta.1_Missense_Mutation_p.E102K|DLG2_uc001pak.2_Missense_Mutation_p.E207K|DLG2_uc010rtb.1_Missense_Mutation_p.E69K|DLG2_uc001pal.1_Missense_Mutation_p.E102K|DLG2_uc001pam.1_Missense_Mutation_p.E141K	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	102	PDZ 1.					cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				CTTACCCTCTCCAGTGTAATT	0.308000													7	26					0	0	0	0
CHORDC1	26973	broad.mit.edu	37	11	89944413	89944413	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:89944413G>C	uc001pdg.2	-	5	813	c.403C>G	c.(403-405)CTG>GTG	p.L135V	CHORDC1_uc009yvz.2_Missense_Mutation_p.L116V	NM_012124	NP_036256	Q9UHD1	CHRD1_HUMAN	cysteine and histidine-rich domain-containing	135	Interaction with HSP90AA1 and HSP90AB1 (By similarity).				chaperone-mediated protein folding|regulation of response to stress|response to stress		Hsp90 protein binding|identical protein binding				0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.00915)				CCTGATGACAGTTTAAGTTTA	0.303000													18	65					0	0	0	0
MLL	4297	broad.mit.edu	37	11	118375349	118375349	+	Silent	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:118375349C>A	uc001pta.2	+	27	8756	c.8733C>A	c.(8731-8733)GTC>GTA	p.V2911V	MLL_uc001ptb.2_Silent_p.V2914V	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2911					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		ATAGTAGTGTCTCTTCCTCTA	0.478000			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								39	117					2.54651e-27	2.89985e-27	1	0
TECTA	7007	broad.mit.edu	37	11	120998603	120998603	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:120998603C>T	uc010rzo.1	+	8	1917	c.1917C>T	c.(1915-1917)CTC>CTT	p.L639L		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	639	TIL 1.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GCTTCGTCCTCAGCACCAGCC	0.657000													22	69					0	0	0	0
SORL1	6653	broad.mit.edu	37	11	121348887	121348887	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:121348887G>A	uc001pxx.2	+	3	543	c.463G>A	c.(463-465)GGC>AGC	p.G155S		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	155	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GTTAAACTTTGGCTTGGGAAA	0.453000													13	41					0	0	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46320591	46320591	+	Missense_Mutation	SNP	G	A	A	rs112858085		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr12:46320591G>A	uc001rox.2	-	11	3180	c.2893C>T	c.(2893-2895)CGG>TGG	p.R965W	SFRS2IP_uc001row.2_Missense_Mutation_p.R650W|SFRS2IP_uc001roy.1_Missense_Mutation_p.R1039W	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	965	Arg-rich.				spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		CCCTTCCACCGGGGAGAGTAA	0.428000													41	138					0	0	0	0
ACVR1B	91	broad.mit.edu	37	12	52380658	52380658	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr12:52380658T>G	uc001rzn.2	+	7	1235	c.1193T>G	c.(1192-1194)TTT>TGT	p.F398C	ACVR1B_uc001rzl.2_Missense_Mutation_p.F398C|ACVR1B_uc001rzm.2_Missense_Mutation_p.F398C|ACVR1B_uc010snn.1_Missense_Mutation_p.F439C	NM_004302	NP_004293	P36896	ACV1B_HUMAN	activin A receptor, type IB isoform a precursor	398	Protein kinase.|Cytoplasmic (Potential).				G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|peptidyl-threonine phosphorylation|positive regulation of activin receptor signaling pathway|positive regulation of erythrocyte differentiation|protein autophosphorylation|transmembrane receptor protein serine/threonine kinase signaling pathway	cell surface	activin receptor activity, type I|ATP binding|metal ion binding|SMAD binding|transforming growth factor beta receptor activity|ubiquitin protein ligase binding			pancreas(4)|breast(2)|ovary(1)|lung(1)|kidney(1)	9				BRCA - Breast invasive adenocarcinoma(357;0.104)	Adenosine triphosphate(DB00171)	TTTGACTCCTTTAAATGTGCT	0.408000													33	84					0	0	0	0
AMHR2	269	broad.mit.edu	37	12	53823690	53823690	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr12:53823690C>T	uc001scx.1	+	9	1294	c.1216C>T	c.(1216-1218)CGA>TGA	p.R406*	AMHR2_uc009zmy.1_Nonsense_Mutation_p.R406*	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	406	Cytoplasmic (Potential).|Protein kinase.		R -> Q (in PMDS2).		Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	CATGGCCCTCCGACGAGCTGA	0.582000									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				16	47					0	0	0	0
IRAK3	11213	broad.mit.edu	37	12	66639014	66639014	+	Missense_Mutation	SNP	G	A	A	rs140671957		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr12:66639014G>A	uc001sth.2	+	11	1388	c.1286G>A	c.(1285-1287)CGG>CAG	p.R429Q	IRAK3_uc010ssy.1_Missense_Mutation_p.R368Q	NM_007199	NP_009130	Q9Y616	IRAK3_HUMAN	interleukin-1 receptor-associated kinase 3	429	Protein kinase.		R -> Q (may be associated with ASRT5).		interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|negative regulation of innate immune response|negative regulation of interleukin-12 production|negative regulation of interleukin-6 production|negative regulation of macrophage cytokine production|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein catabolic process|negative regulation of protein complex disassembly|negative regulation of toll-like receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of macrophage tolerance induction|positive regulation of NF-kappaB transcription factor activity|response to exogenous dsRNA|response to lipopolysaccharide|response to peptidoglycan	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein heterodimerization activity|protein homodimerization activity|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(2)|central_nervous_system(1)	8				GBM - Glioblastoma multiforme(28;0.0203)		GCTGCAACGCGGGCAAAGTTA	0.438000													31	87					0	0	0	0
C12orf74	338809	broad.mit.edu	37	12	93100819	93100819	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr12:93100819C>T	uc001tch.1	+	2	642	c.412C>T	c.(412-414)CAG>TAG	p.Q138*	C12orf74_uc001tci.2_Nonsense_Mutation_p.Q138*	NM_001037671	NP_001032760	Q32Q52	CL074_HUMAN	hypothetical protein LOC338809	138											0						TCCTGAGCTTCAGCCTGTCAA	0.582000													12	50					0	0	0	0
KNTC1	9735	broad.mit.edu	37	12	123078827	123078827	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr12:123078827C>G	uc001ucv.2	+	43	4413	c.4250C>G	c.(4249-4251)TCT>TGT	p.S1417C	KNTC1_uc010taf.1_Intron	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	1417					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		TTCTAGATTTCTTTTCAACCA	0.343000													21	54					0	0	0	0
VPS37B	79720	broad.mit.edu	37	12	123355461	123355461	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr12:123355461A>C	uc001udl.2	-	2	362	c.259T>G	c.(259-261)TAT>GAT	p.Y87D		NM_024667	NP_078943	Q9H9H4	VP37B_HUMAN	vacuolar protein sorting 37B	87	VPS37 C-terminal.|Interaction with IST1.				cellular membrane organization|endosome transport|protein transport	late endosome membrane					0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.08e-05)|Epithelial(86;0.000197)|BRCA - Breast invasive adenocarcinoma(302;0.205)		TTTATCTGATAGGCTTCAAAG	0.448000													24	79					0	0	0	0
RIMBP2	23504	broad.mit.edu	37	12	130921797	130921797	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr12:130921797C>T	uc001uil.2	-	10	1809	c.1645G>A	c.(1645-1647)GTG>ATG	p.V549M	RIMBP2_uc001uim.2_Missense_Mutation_p.V457M|RIMBP2_uc001uin.1_Missense_Mutation_p.V208M	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	549	Fibronectin type-III 3.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		ACAAGCTCCACGGCCGTGCTG	0.692000													5	4					0	0	0	0
RIMBP2	23504	broad.mit.edu	37	12	130934748	130934748	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr12:130934748T>C	uc001uil.2	-	6	691	c.527A>G	c.(526-528)TAT>TGT	p.Y176C	RIMBP2_uc001uim.2_Missense_Mutation_p.Y84C	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	176	SH3 1.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CACTTACCTATAGCGGGCAAC	0.562000													4	7					0	0	0	0
DGKH	160851	broad.mit.edu	37	13	42783488	42783488	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr13:42783488A>G	uc001uyl.1	+	23	2758	c.2737A>G	c.(2737-2739)ATA>GTA	p.I913V	DGKH_uc010tfh.1_Missense_Mutation_p.I913V|DGKH_uc001uym.1_Missense_Mutation_p.I913V|DGKH_uc010tfi.1_Missense_Mutation_p.I668V|DGKH_uc010tfj.1_Missense_Mutation_p.I768V|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Missense_Mutation_p.I768V|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	913					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		GAAAATCACTATATTTGGTGA	0.393000													10	38					0	0	0	0
PCDH8	5100	broad.mit.edu	37	13	53420356	53420356	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr13:53420356A>C	uc001vhi.2	-	1	2419	c.2216T>G	c.(2215-2217)GTG>GGG	p.V739G	PCDH8_uc001vhj.2_Missense_Mutation_p.V739G	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	739	Extracellular (Potential).				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		CGACCCGGACACCCCGAGCCG	0.711000													9	30					0	0	0	0
SLITRK6	84189	broad.mit.edu	37	13	86370532	86370532	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr13:86370532C>T	uc001vll.1	-	2	571	c.112G>A	c.(112-114)GAG>AAG	p.E38K	SLITRK6_uc010afe.1_5'Flank	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	38	LRRNT 1.|Extracellular (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		TCTTTTTCCTCACAATTGCAA	0.398000													4	51					0	0	0	0
MYO16	23026	broad.mit.edu	37	13	109699324	109699324	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr13:109699324C>G	uc001vqt.1	+	24	2917	c.2791C>G	c.(2791-2793)CTA>GTA	p.L931V	MYO16_uc010agk.1_Missense_Mutation_p.L953V|MYO16_uc001vqu.1_Missense_Mutation_p.L731V|MYO16_uc010tjh.1_Missense_Mutation_p.L443V	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	931	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			ACAGAATCTTCTATTTGTAAT	0.313000													14	46					0	0	0	0
PTPN21	11099	broad.mit.edu	37	14	88945670	88945670	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr14:88945670G>C	uc001xwv.3	-	13	2436	c.2105C>G	c.(2104-2106)TCG>TGG	p.S702W	PTPN21_uc010twc.1_Missense_Mutation_p.S498W	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	702						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						GGTGGCGTCCGACAGGGACTT	0.672000													15	49					0	0	0	0
GPR68	8111	broad.mit.edu	37	14	91700861	91700861	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr14:91700861G>C	uc001xzg.2	-	2	875	c.534C>G	c.(532-534)ATC>ATG	p.I178M	GPR68_uc001xzh.2_Missense_Mutation_p.I188M	NM_003485	NP_003476	Q15743	OGR1_HUMAN	G protein-coupled receptor 68	178	Extracellular (Potential).				inflammatory response	integral to plasma membrane	G-protein coupled receptor activity			kidney(1)	1		all_cancers(154;0.0555)		COAD - Colon adenocarcinoma(157;0.21)		GCCATGCCTGGATGGGGTAGT	0.622000													3	18					0	0	0	0
CASC5	57082	broad.mit.edu	37	15	40951562	40951562	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr15:40951562G>A	uc010bbs.1	+	26	6978	c.6817G>A	c.(6817-6819)GCA>ACA	p.A2273T	CASC5_uc010bbt.1_Missense_Mutation_p.A2247T	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	2273	Necessary for kinetochore localization and for interaction with NSL1 and DSN1.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		CTCTAGCTCCGCAGCATTTGC	0.328000													20	39					0	0	0	0
USP8	9101	broad.mit.edu	37	15	50769638	50769638	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr15:50769638C>G	uc001zym.3	+	11	1660	c.1160C>G	c.(1159-1161)TCT>TGT	p.S387C	USP8_uc001zyk.1_Missense_Mutation_p.S88C|USP8_uc001zyl.3_Missense_Mutation_p.S387C|USP8_uc001zyn.3_Missense_Mutation_p.S387C|USP8_uc010ufh.1_Missense_Mutation_p.S310C|USP8_uc010bev.1_Missense_Mutation_p.S16C	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	387					cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		GTTGCTGCTTCTAAATCTGAT	0.343000													23	43					0	0	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79058842	79058842	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr15:79058842G>A	uc002bej.3	-	19	3622	c.3411C>T	c.(3409-3411)GCC>GCT	p.A1137A	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1137					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GGGAGCGGCCGGCCTGGCTAG	0.677000													3	15					0	0	0	0
SV2B	9899	broad.mit.edu	37	15	91835756	91835756	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr15:91835756G>C	uc002bqv.2	+	12	2417	c.2026G>C	c.(2026-2028)GAG>CAG	p.E676Q	SV2B_uc010uqv.1_Missense_Mutation_p.E525Q|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	676	Cytoplasmic (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity	p.E676Q(1)		ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			TCGACTGCCAGAGACTCGAGA	0.507000													31	82					0	0	0	0
LYSMD4	145748	broad.mit.edu	37	15	100269526	100269526	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr15:100269526G>A	uc002bvk.2	-	3	756	c.693C>T	c.(691-693)GTC>GTT	p.V231V	LYSMD4_uc002bvj.1_Intron|LYSMD4_uc010bou.1_Intron|LYSMD4_uc002bvl.2_Silent_p.V232V|LYSMD4_uc002bvm.2_3'UTR|LYSMD4_uc010bov.2_Silent_p.V231V			Q5XG99	LYSM4_HUMAN	SubName: Full=cDNA FLJ77040, highly similar to Homo sapiens LysM, putative peptidoglycan-binding, domain containing 4, mRNA; SubName: Full=LysM, putative peptidoglycan-binding, domain containing 4, isoform CRA_c;	231	Helical; (Potential).				cell wall macromolecule catabolic process	integral to membrane					0	Lung NSC(78;0.00335)|all_lung(78;0.00659)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00162)|LUSC - Lung squamous cell carcinoma(107;0.17)|Lung(145;0.208)			AGACAGGCAAGACAATACCAA	0.478000													44	142					0	0	0	0
UBE2MP1	606551	broad.mit.edu	37	16	34404616	34404616	+	RNA	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr16:34404616T>C	uc002edv.1	-	1		c.147A>G				NR_002837				full-length cDNA clone CS0DH003YB23 of T cells (Jurkat cell line) of Homo sapiens (human).												0						TTGATCATCCTACCGCTgccg	0.488000													5	18					0	0	0	0
TMCO7	79613	broad.mit.edu	37	16	68893913	68893913	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr16:68893913G>C	uc002ewi.3	+	2	233	c.221G>C	c.(220-222)AGA>ACA	p.R74T	TMCO7_uc002ewh.2_Missense_Mutation_p.R74T	NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	74						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		AAACTCCTAAGAGATGAAATT	0.403000													6	51					0	0	0	0
ZFP1	162239	broad.mit.edu	37	16	75204123	75204123	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr16:75204123G>A	uc002fdo.2	+	4	1279	c.1115G>A	c.(1114-1116)CGA>CAA	p.R372Q	ZFP1_uc002fdp.2_Missense_Mutation_p.R317Q|ZFP1_uc010cgt.2_Missense_Mutation_p.R339Q|ZFP1_uc010cgs.2_Missense_Mutation_p.R317Q|ZFP1_uc002fdq.2_Missense_Mutation_p.R372Q	NM_153688	NP_710155	Q6P2D0	ZFP1_HUMAN	zinc finger protein 1 homolog	372	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.R372Q(1)		upper_aerodigestive_tract(1)|ovary(1)	2						TTACACTTGCGAATCCACACA	0.473000													7	55					0	0	0	0
CHST6	4166	broad.mit.edu	37	16	75513142	75513142	+	Silent	SNP	T	C	C	rs138994371		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr16:75513142T>C	uc002fef.2	-	3	765	c.585A>G	c.(583-585)CTA>CTG	p.L195L	CHST6_uc002feg.1_RNA|CHST6_uc002feh.1_Silent_p.L195L	NM_021615	NP_067628	Q9GZX3	CHST6_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	195	Lumenal (Potential).				keratan sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						GCACGATGCGTAGGTTGAGCG	0.687000													11	44					0	0	0	0
MBTPS1	8720	broad.mit.edu	37	16	84104310	84104310	+	Silent	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr16:84104310T>C	uc002fhi.2	-	13	2167	c.1665A>G	c.(1663-1665)TTA>TTG	p.L555L	MBTPS1_uc002fhh.2_Silent_p.L59L	NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1	555	Lumenal (Potential).				cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						ACCAAGGCCATAAGACCGAGG	0.522000													16	73					0	0	0	0
ZFP3	124961	broad.mit.edu	37	17	4994843	4994843	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr17:4994843C>T	uc002gaq.2	+	2	169	c.44C>T	c.(43-45)TCT>TTT	p.S15F		NM_153018	NP_694563	Q96NJ6	ZFP3_HUMAN	zinc finger protein-3	15					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAAGAAATTTCTGAAGAATCT	0.403000													16	15					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7577114	7577114	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr17:7577114C>A	uc002gim.2	-	8	1018	c.824G>T	c.(823-825)TGT>TTT	p.C275F	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.C275F|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.C143F|TP53_uc010cng.1_Missense_Mutation_p.C143F|TP53_uc002gii.1_Missense_Mutation_p.C143F|TP53_uc010cnh.1_Missense_Mutation_p.C275F|TP53_uc010cni.1_Missense_Mutation_p.C275F|TP53_uc002gij.2_Missense_Mutation_p.C275F	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	275	Interaction with DNA.||Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		C -> S (in sporadic cancers; somatic mutation).|C -> G (in sporadic cancers; somatic mutation).|C -> F (in sporadic cancers; somatic mutation).|C -> W (in sporadic cancers; somatic mutation).|C -> Y (in LFS; germline mutation and in sporadic cancers; somatic mutation).|C -> R (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.C275Y(44)|p.C275F(34)|p.C275G(7)|p.C275W(7)|p.0?(7)|p.C275R(6)|p.C275C(4)|p.C275fs*70(2)|p.C275fs*31(2)|p.?(2)|p.C275S(2)|p.R273_C275delRVC(1)|p.C275_A276ins10(1)|p.V274_P278del(1)|p.C275*(1)|p.F270_D281del12(1)|p.C275_R283delCACPGRDRR(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.C275fs*67(1)|p.V272_K292del21(1)|p.C275fs*20(1)|p.A276fs*29(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AGGACAGGCACAAACACGCAC	0.552000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			16	18					1.52009e-12	1.69057e-12	1	0
ZNF286A	57335	broad.mit.edu	37	17	15619477	15619477	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr17:15619477G>T	uc010cot.2	+	6	835	c.439G>T	c.(439-441)GTC>TTC	p.V147F	ZNF286A_uc002goz.3_Missense_Mutation_p.V35F|ZNF286A_uc010vwa.1_Missense_Mutation_p.V147F|ZNF286A_uc002gpa.2_Missense_Mutation_p.V147F	NM_001130842	NP_001124314	Q9HBT8	Z286A_HUMAN	zinc finger protein 286	147					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)|READ - Rectum adenocarcinoma(1115;0.0222)|BRCA - Breast invasive adenocarcinoma(8;0.0781)		ACGGAATAGTGTCTATGACTC	0.403000													19	20					3.62473e-10	3.99392e-10	1	0
WIPF2	147179	broad.mit.edu	37	17	38433351	38433351	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr17:38433351G>C	uc002hug.1	+	7	1437	c.1197G>C	c.(1195-1197)AAG>AAC	p.K399N	WIPF2_uc002huh.1_Missense_Mutation_p.K249N|WIPF2_uc010cww.1_Missense_Mutation_p.K249N|WIPF2_uc002hui.1_Missense_Mutation_p.K399N|WIPF2_uc010cwx.1_Missense_Mutation_p.K141N|WIPF2_uc010cwy.1_Missense_Mutation_p.K399N	NM_133264	NP_573571	Q8TF74	WIPF2_HUMAN	WIRE protein	399						cytoplasm|cytoskeleton	actin binding	p.K399N(1)		upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						TTGAGTCAAAGTATTCCTTCC	0.413000										HNSCC(43;0.11)			20	78					0	0	0	0
GFAP	2670	broad.mit.edu	37	17	42992693	42992693	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr17:42992693C>T	uc002ihq.2	-	1	222	c.162G>A	c.(160-162)CTG>CTA	p.L54L	GFAP_uc002ihr.2_Silent_p.L54L|GFAP_uc010wjg.1_RNA	NM_002055	NP_002046	P14136	GFAP_HUMAN	glial fibrillary acidic protein isoform 1	54	Head.					cytoplasm|intermediate filament	structural constituent of cytoskeleton			ovary(1)|pancreas(1)	2		Prostate(33;0.0959)				GTGCCCCAGCCAGGGAGAAAT	0.657000													18	40					0	0	0	0
TTLL6	284076	broad.mit.edu	37	17	46862375	46862375	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr17:46862375G>A	uc010wlo.1	-	14	1985	c.1950C>T	c.(1948-1950)CTC>CTT	p.L650L	TTLL6_uc002iob.2_Silent_p.L343L|TTLL6_uc010dbi.2_RNA|TTLL6_uc002ioc.2_Silent_p.L403L|TTLL6_uc002iod.2_Silent_p.L497L	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	602						cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						TCGAGCTGCTGAGATTGATAT	0.483000													72	121					0	0	0	0
BAHCC1	57597	broad.mit.edu	37	17	79410170	79410170	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr17:79410170G>A	uc002kaf.2	+	3	1795	c.1795G>A	c.(1795-1797)GAG>AAG	p.E599K	BAHCC1_uc002kae.2_5'Flank	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	599							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			CATCAGCGAGGAGCGCAAGGC	0.706000													11	30					0	0	0	0
EPB41L3	23136	broad.mit.edu	37	18	5397422	5397422	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr18:5397422T>C	uc002kmt.1	-	18	2562	c.2476A>G	c.(2476-2478)ATG>GTG	p.M826V	EPB41L3_uc010wzh.1_Missense_Mutation_p.M657V|EPB41L3_uc002kmu.1_Missense_Mutation_p.M604V|EPB41L3_uc010dkq.1_Missense_Mutation_p.M495V|EPB41L3_uc002kms.1_Missense_Mutation_p.M61V|EPB41L3_uc010wze.1_Missense_Mutation_p.M131V|EPB41L3_uc010wzf.1_Missense_Mutation_p.M123V|EPB41L3_uc010wzg.1_Missense_Mutation_p.M98V|EPB41L3_uc010dkr.2_Missense_Mutation_p.M218V	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	826	Spectrin--actin-binding (Potential).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						TTGGTTTCCATTTTCTGCATG	0.517000													32	82					0	0	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14780007	14780007	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr18:14780007C>G	uc010dlo.2	+	11	1649	c.1469C>G	c.(1468-1470)TCT>TGT	p.S490C	ANKRD30B_uc010xak.1_RNA	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	490										ovary(1)|skin(1)	2						GAAGAATATTCTTGGGATTCT	0.313000													5	11					0	0	0	0
DSG3	1830	broad.mit.edu	37	18	29055986	29055986	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr18:29055986C>T	uc002kws.2	+	16	2872	c.2763C>T	c.(2761-2763)TCC>TCT	p.S921S	DSG3_uc002kwt.2_Silent_p.S203S	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	921	Desmoglein repeat 1.|Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CAGCTGTTTCCATCCCTGACC	0.507000													22	70					0	0	0	0
NETO1	81832	broad.mit.edu	37	18	70461478	70461478	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr18:70461478C>T	uc002lkw.2	-	6	797	c.513G>A	c.(511-513)GCG>GCA	p.A171A	NETO1_uc002lkx.1_Silent_p.A170A|NETO1_uc002lky.1_Silent_p.A171A	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	171	Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		CAAACTCACACGCTAAATAAC	0.388000													19	61					0	0	0	0
SFRS14	10147	broad.mit.edu	37	19	19112448	19112448	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr19:19112448G>A	uc002nkx.2	-	8	3111	c.2965C>T	c.(2965-2967)CGG>TGG	p.R989W	SFRS14_uc002nkz.1_Missense_Mutation_p.R1003W|SFRS14_uc002nla.1_Missense_Mutation_p.R989W|SFRS14_uc002nlb.2_Missense_Mutation_p.R989W|SFRS14_uc010xqk.1_Missense_Mutation_p.R758W	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	989					mRNA processing|RNA splicing	nucleus	RNA binding	p.R989W(1)			0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			GGACGACCCCGAGGCCTGTCA	0.423000													11	62					0	0	0	0
ZNF345	25850	broad.mit.edu	37	19	37368294	37368294	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr19:37368294G>A	uc002oex.2	+	3	940	c.562G>A	c.(562-564)GCC>ACC	p.A188T	ZNF345_uc002oey.3_Missense_Mutation_p.A188T|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	188	C2H2-type 5.				negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TTTTGAATCAGCCCTTATTCG	0.413000													22	41					0	0	0	0
HNRNPL	3191	broad.mit.edu	37	19	39336360	39336360	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr19:39336360T>C	uc010xul.1	-	4	651	c.640A>G	c.(640-642)ATC>GTC	p.I214V	HNRNPL_uc010xum.1_Missense_Mutation_p.I81V|HNRNPL_uc010xun.1_5'Flank	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	214	RRM 2.				nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			GGATTACAGATAGTGTAAAGA	0.478000													13	44					0	0	0	0
ZNF222	7673	broad.mit.edu	37	19	44536636	44536636	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr19:44536636C>A	uc002oyc.2	+	4	992	c.809C>A	c.(808-810)TCA>TAA	p.S270*	ZNF284_uc010ejd.2_Intron|ZNF222_uc002oye.2_Nonsense_Mutation_p.S310*|ZNF222_uc002oyd.2_Nonsense_Mutation_p.S216*	NM_013360	NP_037492	Q9UK12	ZN222_HUMAN	zinc finger protein 222 isoform 2	270	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Prostate(69;0.0435)				TGTCTTAGGTCAAGTCTTAAT	0.393000													34	97					9.04072e-19	1.01495e-18	1	0
HIF3A	64344	broad.mit.edu	37	19	46828852	46828852	+	Missense_Mutation	SNP	G	A	A	rs139513428		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr19:46828852G>A	uc002peh.2	+	11	1425	c.1396G>A	c.(1396-1398)GGG>AGG	p.G466R	HIF3A_uc002peg.3_Missense_Mutation_p.G466R|HIF3A_uc010xxx.1_RNA|HIF3A_uc002pei.3_Missense_Mutation_p.G410R|HIF3A_uc002pej.1_Missense_Mutation_p.G397R|HIF3A_uc002pek.2_Missense_Mutation_p.G410R|HIF3A_uc010xxy.1_Missense_Mutation_p.G397R|HIF3A_uc002pel.2_Missense_Mutation_p.G464R|HIF3A_uc010xxz.1_Missense_Mutation_p.G415R	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	466	NTAD.|ODD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity	p.G464R(1)		upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		CTTCACCTCCGGGAAAGACAC	0.507000													45	129					0	0	0	0
EMP3	2014	broad.mit.edu	37	19	48830823	48830823	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr19:48830823G>A	uc002piv.2	+	3	378	c.124G>A	c.(124-126)GAC>AAC	p.D42N		NM_001425	NP_001416	P54852	EMP3_HUMAN	epithelial membrane protein 3	42					cell growth|negative regulation of cell proliferation	integral to membrane					0		all_epithelial(76;6.08e-07)|all_lung(116;5.76e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.00989)|Prostate(7;0.0143)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000138)|all cancers(93;0.00017)|Epithelial(262;0.0138)|GBM - Glioblastoma multiforme(486;0.0146)		TCTCTGGTACGACTGCACGTG	0.562000													7	32					0	0	0	0
SLC6A16	28968	broad.mit.edu	37	19	49813315	49813315	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr19:49813315T>A	uc002pmz.2	-	4	916	c.682A>T	c.(682-684)ATG>TTG	p.M228L	SLC6A16_uc002pna.2_Missense_Mutation_p.M228L|hsa-mir-4324|MI0015854_5'Flank	NM_014037	NP_054756	Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	228	Extracellular (Potential).					integral to membrane|intracellular	neurotransmitter:sodium symporter activity			skin(2)|ovary(1)|kidney(1)	4		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)		CTAGAGTTCATCGTTAAGGGA	0.289000													28	61					0	0	0	0
ZNF616	90317	broad.mit.edu	37	19	52619980	52619980	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr19:52619980G>T	uc002pym.2	-	4	720	c.437C>A	c.(436-438)TCA>TAA	p.S146*	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	146					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		AGCCAGACGTGACTCAAAGTT	0.383000													35	122					9.04072e-19	1.01495e-18	1	0
NLRP4	147945	broad.mit.edu	37	19	56388492	56388492	+	Missense_Mutation	SNP	C	T	T	rs147716168		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr19:56388492C>T	uc002qmd.3	+	8	3078	c.2656C>T	c.(2656-2658)CGG>TGG	p.R886W	NLRP4_uc002qmf.2_Missense_Mutation_p.R811W|NLRP4_uc010etf.2_Missense_Mutation_p.R661W	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	886	LRR 6.						ATP binding	p.R886W(1)		ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GCTGTTGTGTCGGGCTCTGAC	0.498000													38	108					0	0	0	0
PEG3	5178	broad.mit.edu	37	19	57325894	57325894	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr19:57325894T>G	uc002qnu.2	-	7	4267	c.3916A>C	c.(3916-3918)AAT>CAT	p.N1306H	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.N1277H|PEG3_uc002qnv.2_Missense_Mutation_p.N1306H|PEG3_uc002qnw.2_Missense_Mutation_p.N1182H|PEG3_uc002qnx.2_Missense_Mutation_p.N1180H|PEG3_uc010etr.2_Missense_Mutation_p.N1306H	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1306					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.N1306H(2)		ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TAGGGCTCATTCTTATGAACA	0.448000													18	52					0	0	0	0
USP34	9736	broad.mit.edu	37	2	61415337	61415337	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:61415337A>G	uc002sbe.2	-	80	10563	c.10541T>C	c.(10540-10542)ATG>ACG	p.M3514T	USP34_uc002sbd.2_Missense_Mutation_p.M316T	NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	3514					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			ATGTTGCTGCATATGACTAAA	0.468000													16	68					0	0	0	0
ERCC3	2071	broad.mit.edu	37	2	128044295	128044295	+	Silent	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:128044295T>C	uc002toh.1	-	8	1421	c.1326A>G	c.(1324-1326)GAA>GAG	p.E442E	ERCC3_uc002toe.1_Silent_p.E197E|ERCC3_uc002tof.1_Silent_p.E378E|ERCC3_uc002tog.1_Silent_p.E378E|ERCC3_uc010flx.1_Silent_p.E197E	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	442	Helicase ATP-binding.|DEVH box.				cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		TGGTGTGCACTTCATCCAGGA	0.557000			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				23	84					0	0	0	0
LRP1B	53353	broad.mit.edu	37	2	141081531	141081531	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:141081531C>A	uc002tvj.1	-	81	13417	c.12445G>T	c.(12445-12447)GAG>TAG	p.E4149*		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4149	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding	p.E4149*(1)		lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GCTAAGTACTCTACTGAACCA	0.289000										TSP Lung(27;0.18)			21	55					7.45023e-12	8.24723e-12	1	0
LRP1B	53353	broad.mit.edu	37	2	141625820	141625821	+	Missense_Mutation	DNP	CC	GG	GG			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:141625820_141625821CC>GG	uc002tvj.1	-	26	5153_5154	c.4181_4182GG>CC	c.(4180-4182)TGG>TCC	p.W1394S	LRP1B_uc010fnl.1_Missense_Mutation_p.W576S	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1394	Extracellular (Potential).|LDL-receptor class B 11.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCCAGTCTGTCCAGAAAAGAAT	0.267000										TSP Lung(27;0.18)			9	33					0	0	0	0
ZEB2	9839	broad.mit.edu	37	2	145156648	145156648	+	Silent	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:145156648A>G	uc002tvu.2	-	8	2586	c.2106T>C	c.(2104-2106)AAT>AAC	p.N702N	ZEB2_uc002tvv.2_Silent_p.N696N|ZEB2_uc010zbm.1_Silent_p.N673N|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Silent_p.N731N	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	702	Homeobox; atypical.					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		GGGACCTGGAATTTGAGTACT	0.463000													48	155					0	0	0	0
EPC2	26122	broad.mit.edu	37	2	149526743	149526743	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:149526743G>A	uc010zbt.1	+	8	1191	c.1164G>A	c.(1162-1164)CCG>CCA	p.P388P		NM_015630	NP_056445	Q52LR7	EPC2_HUMAN	enhancer of polycomb homolog 2	388					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)|breast(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0516)		TATCAGAACCGGAAGAAGAAA	0.388000													7	14					0	0	0	0
PGAP1	80055	broad.mit.edu	37	2	197738421	197738421	+	Silent	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:197738421C>G	uc002utw.2	-	15	1602	c.1488G>C	c.(1486-1488)CTG>CTC	p.L496L	PGAP1_uc002utx.2_Silent_p.L322L|PGAP1_uc002uty.1_Silent_p.L496L	NM_024989	NP_079265	Q75T13	PGAP1_HUMAN	GPI deacylase	496	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|intracellular protein transport|myo-inositol transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	nuclease activity|phosphoric ester hydrolase activity			ovary(3)|central_nervous_system(1)	4						GTCCAAAGTTCAGAAGCTCTA	0.294000													15	48					0	0	0	0
SF3B1	23451	broad.mit.edu	37	2	198285204	198285204	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:198285204C>T	uc002uue.2	-	4	411	c.363G>A	c.(361-363)AAG>AAA	p.K121K	SF3B1_uc010fsk.1_RNA|SF3B1_uc002uuf.2_Silent_p.K121K|SF3B1_uc002uug.2_Silent_p.K121K	NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	121					nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TCCGCCTATGCTTTTTGTATT	0.373000													23	49					0	0	0	0
PSMD1	5707	broad.mit.edu	37	2	231944262	231944262	+	Silent	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:231944262A>G	uc002vrn.1	+	11	1304	c.1173A>G	c.(1171-1173)GAA>GAG	p.E391E	PSMD1_uc002vrm.1_Silent_p.E391E|PSMD1_uc010fxu.1_Silent_p.E255E	NM_002807	NP_002798	Q99460	PSMD1_HUMAN	proteasome 26S non-ATPase subunit 1	391					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding			ovary(1)|skin(1)	2		Ovarian(221;0.000626)|Medulloblastoma(418;0.0109)|Renal(207;0.0112)|Lung NSC(271;0.0538)|all_lung(227;0.0713)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;4e-26)|LUSC - Lung squamous cell carcinoma(224;0.0138)|Lung(119;0.0168)	Bortezomib(DB00188)	ATAATTTGGAATGGTTAGCCA	0.313000													6	21					0	0	0	0
INPP5D	3635	broad.mit.edu	37	2	233925301	233925301	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:233925301G>A	uc010zmo.1	+	1	266	c.113G>A	c.(112-114)CGG>CAG	p.R38Q	INPP5D_uc010zmp.1_Missense_Mutation_p.R38Q	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	38	SH2.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		TCCATCTCCCGGGCATACGCG	0.617000													15	57					0	0	0	0
ASB1	51665	broad.mit.edu	37	2	239344474	239344474	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:239344474A>G	uc002vyg.2	+	3	400	c.314A>G	c.(313-315)GAT>GGT	p.D105G		NM_001040445	NP_001035535	Q9Y576	ASB1_HUMAN	ankyrin repeat and SOCS box-containing protein	105	ANK 2.				intracellular signal transduction|negative regulation of cytokine biosynthetic process						0		all_epithelial(40;2.65e-14)|Breast(86;7.61e-05)|Renal(207;0.00183)|all_lung(227;0.0283)|Ovarian(221;0.0365)|Lung NSC(271;0.0941)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;2.04e-26)|OV - Ovarian serous cystadenocarcinoma(60;4.5e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;2.88e-05)|Lung(119;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00644)		GCCGAGGTGGATCTGGTGGAC	0.627000													12	29					0	0	0	0
VPS16	64601	broad.mit.edu	37	20	2844895	2844895	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr20:2844895C>T	uc002whe.2	+	17	1730	c.1682C>T	c.(1681-1683)GCA>GTA	p.A561V	VPS16_uc002whh.2_RNA|PTPRA_uc002whj.2_5'UTR|VPS16_uc002whf.2_Missense_Mutation_p.A417V|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_Missense_Mutation_p.A247V|VPS16_uc002whi.2_Missense_Mutation_p.A45V	NM_022575	NP_072097	Q9H269	VPS16_HUMAN	vacuolar protein sorting 16 isoform 1	561					intracellular protein transport	early endosome|HOPS complex|late endosome membrane|lysosomal membrane|recycling endosome				ovary(2)|pancreas(1)|skin(1)	4						AGCAAACTGGCACTAAGCAAG	0.602000													14	41					0	0	0	0
CABIN1	23523	broad.mit.edu	37	22	24432587	24432587	+	Silent	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr22:24432587A>G	uc002zzi.1	+	3	181	c.54A>G	c.(52-54)GAA>GAG	p.E18E	CABIN1_uc002zzj.1_Silent_p.E18E|CABIN1_uc002zzl.1_Silent_p.E18E|CABIN1_uc010guk.1_Silent_p.E18E|CABIN1_uc002zzk.1_Silent_p.E18E	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	18					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						ATGATCATGAAGGAAGCTTTA	0.453000													76	174					0	0	0	0
DNAJB7	150353	broad.mit.edu	37	22	41257490	41257490	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr22:41257490G>C	uc003azj.2	-	1	641	c.509C>G	c.(508-510)TCT>TGT	p.S170C	XPNPEP3_uc011aox.1_Intron|XPNPEP3_uc003azh.2_Intron|XPNPEP3_uc003azi.2_Intron|XPNPEP3_uc011aoy.1_5'Flank|XPNPEP3_uc003azg.1_Intron|XPNPEP3_uc003azf.1_Intron|XPNPEP3_uc010gyh.1_5'Flank	NM_145174	NP_660157	Q7Z6W7	DNJB7_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 7	170					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)	1						GGAAGAGAAAGAAGTAAGGCC	0.353000													14	58					0	0	0	0
KIAA1644	85352	broad.mit.edu	37	22	44681438	44681438	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr22:44681438G>A	uc003bet.2	-	4	602	c.469C>T	c.(469-471)CGG>TGG	p.R157W		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	157	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				TGACCCGGCCGAGGGGCCCGA	0.697000													21	67					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46658432	46658432	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr22:46658432G>A	uc003bhh.2	-	1	788	c.788C>T	c.(787-789)TCC>TTC	p.S263F		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	263	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GGCGGGCACGGAGAACACCTG	0.667000													9	63					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46658434	46658434	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr22:46658434G>A	uc003bhh.2	-	1	786	c.786C>T	c.(784-786)TTC>TTT	p.F262F		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	262	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		CGGGCACGGAGAACACCTGCC	0.677000													9	60					0	0	0	0
KIF9	64147	broad.mit.edu	37	3	47284589	47284589	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr3:47284589A>G	uc010hjp.2	-	17	2265	c.1661T>C	c.(1660-1662)ATT>ACT	p.I554T	KIF9_uc003cqx.2_Missense_Mutation_p.I554T|KIF9_uc003cqy.2_Intron|KIF9_uc011bat.1_Intron|uc003cqw.1_RNA	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	554					blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		AAGGGGCTCAATGCTGGAAGT	0.498000													16	41					0	0	0	0
P4HTM	54681	broad.mit.edu	37	3	49042401	49042401	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr3:49042401G>A	uc003cvg.2	+	6	1344	c.995G>A	c.(994-996)GGG>GAG	p.G332E	P4HTM_uc003cvh.2_Missense_Mutation_p.G332E|WDR6_uc011bbx.1_5'Flank|WDR6_uc003cvj.2_5'Flank|WDR6_uc011bby.1_5'Flank|WDR6_uc010hkn.2_5'Flank|WDR6_uc011bbz.1_5'Flank	NM_177939	NP_808808	Q9NXG6	P4HTM_HUMAN	hypoxia-inducible factor prolyl 4-hydroxylase	332	Lumenal (Potential).|Fe2OG dioxygenase.					endoplasmic reticulum membrane|integral to membrane	calcium ion binding|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			skin(1)|pancreas(1)	2					Vitamin C(DB00126)	GTGGACAGTGGGCCTGTGTAC	0.617000													26	48					0	0	0	0
USP19	10869	broad.mit.edu	37	3	49155121	49155121	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr3:49155121G>C	uc003cwd.1	-	4	602	c.441C>G	c.(439-441)TTC>TTG	p.F147L	USP19_uc003cwa.2_5'UTR|USP19_uc003cvz.3_Missense_Mutation_p.F147L|USP19_uc011bcg.1_Missense_Mutation_p.F147L|USP19_uc003cwb.2_Missense_Mutation_p.F132L|USP19_uc003cwc.1_5'Flank|USP19_uc011bch.1_Missense_Mutation_p.F147L|USP19_uc011bci.1_Missense_Mutation_p.F132L	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	147	Cytoplasmic (Potential).|CS 1.				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		ctgtatctgtgaaagcagcat	0.408000													14	38					0	0	0	0
PHLDB2	90102	broad.mit.edu	37	3	111688671	111688671	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr3:111688671C>T	uc010hqa.2	+	16	3861	c.3450C>T	c.(3448-3450)CTC>CTT	p.L1150L	PHLDB2_uc003dyc.2_Silent_p.L1134L|PHLDB2_uc003dyd.2_Silent_p.L1107L|PHLDB2_uc003dyg.2_Silent_p.L1150L|PHLDB2_uc003dyh.2_Silent_p.L1107L|PHLDB2_uc003dyi.2_Silent_p.L641L|PHLDB2_uc003dyj.2_Silent_p.L205L	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	1150	PH.					cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						GAGGATTCCTCATCAAAATGG	0.418000													18	78					0	0	0	0
KALRN	8997	broad.mit.edu	37	3	124175521	124175521	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr3:124175521G>T	uc003ehg.2	+	23	3921	c.3794G>T	c.(3793-3795)CGG>CTG	p.R1265L	KALRN_uc010hrv.1_Missense_Mutation_p.R1256L|KALRN_uc003ehf.1_Missense_Mutation_p.R1265L|KALRN_uc011bjy.1_Missense_Mutation_p.R1256L|KALRN_uc003ehh.1_Missense_Mutation_p.R611L	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1265					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GTCAAGCTGCGGGACGCCAAC	0.547000													4	74					0.00909568	0.00962121	1	0
ZBTB38	253461	broad.mit.edu	37	3	141162473	141162473	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr3:141162473A>G	uc003etw.2	+	8	2225	c.1243A>G	c.(1243-1245)ATT>GTT	p.I415V	ZBTB38_uc010hun.2_Missense_Mutation_p.I412V|ZBTB38_uc010huo.2_Missense_Mutation_p.I415V|ZBTB38_uc003ety.2_Missense_Mutation_p.I415V|ZBTB38_uc010hup.2_Missense_Mutation_p.I416V	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	415					positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CTATCCTACCATTGGACAAAA	0.448000													27	77					0	0	0	0
GRK7	131890	broad.mit.edu	37	3	141499575	141499575	+	Silent	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr3:141499575G>T	uc011bnd.1	+	2	1056	c.972G>T	c.(970-972)CTG>CTT	p.L324L		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	324	Protein kinase.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						ATGTGCTTCTGGATGACCTCG	0.587000													6	27					0.000157383	0.000168726	1	0
AADAC	13	broad.mit.edu	37	3	151532078	151532078	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr3:151532078T>C	uc003eze.2	+	1	218	c.128T>C	c.(127-129)ATA>ACA	p.I43T		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	43	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			CTGAAAACTATACAAAATTTG	0.348000													3	21					0	0	0	0
SI	6476	broad.mit.edu	37	3	164735778	164735778	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr3:164735778A>T	uc003fei.2	-	29	3562	c.3500T>A	c.(3499-3501)TTA>TAA	p.L1167*		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1167	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity	p.L1167*(1)		ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GCTGTTGAGTAAGAAAACACC	0.338000										HNSCC(35;0.089)			26	31					0	0	0	0
CLDN11	5010	broad.mit.edu	37	3	170150427	170150427	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr3:170150427C>T	uc003fgx.2	+	3	709	c.507C>T	c.(505-507)CTC>CTT	p.L169L	CLDN11_uc011bpt.1_Intron|CLDN11_uc003fgy.2_Silent_p.L85L	NM_005602	NP_005593	O75508	CLD11_HUMAN	claudin 11	169	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			central_nervous_system(1)	1	all_cancers(22;5.62e-23)|all_epithelial(15;7.54e-28)|all_lung(20;2.51e-17)|Lung NSC(18;1.02e-16)|Ovarian(172;0.000567)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			TGCTGTGCCTCGTGGGTGGCT	0.592000													31	131					0	0	0	0
FNDC3B	64778	broad.mit.edu	37	3	172070689	172070689	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr3:172070689G>C	uc003fhy.2	+	22	2783	c.2611G>C	c.(2611-2613)GAG>CAG	p.E871Q	FNDC3B_uc003fhz.3_Missense_Mutation_p.E871Q	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	871	Fibronectin type-III 7.					endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		CTGTGTCCTGGAGGAGGAGCC	0.567000													26	68					0	0	0	0
PIK3CA	5290	broad.mit.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	A	A	rs121913273		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr3:178936082G>A	uc003fjk.2	+	10	1781	c.1624G>A	c.(1624-1626)GAA>AAA	p.E542K		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	542	PI3K helical.		E -> V (in cancer).|E -> K (in KERSEB; shows an increase in lipid kinase activity; oncogenic in vivo; occurs in the interface between the PI3K helical domain and the nSH2 (N-terminal SH2) region of the p85 regulatory subunit and may reduce the inhibitory effect of p85; requires interaction with RAS to induce cellular transformation).|E -> Q (in cancer).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E542K(481)|p.E542V(8)|p.E542Q(6)|p.E542G(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TCCTCTCTCTGAAATCACTGA	0.333000	E542K(SW948_LARGE_INTESTINE)|E542K(T84_LARGE_INTESTINE)|E542K(CAL51_BREAST)|E542K(JHUEM1_ENDOMETRIUM)|E542K(NCIH1341_LUNG)|E542K(VMCUB1_URINARY_TRACT)|E542K(BT483_BREAST)|E542K(HGC27_STOMACH)|E542K(IM95_STOMACH)	57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			11	59					0	0	0	0
ZNF595	152687	broad.mit.edu	37	4	86787	86787	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr4:86787A>G	uc003fzv.1	+	6	1549	c.1393A>G	c.(1393-1395)ACA>GCA	p.T465A	ZNF595_uc003fzu.1_Intron|ZNF718_uc003fzt.3_Intron|ZNF595_uc011bus.1_Missense_Mutation_p.T233A|ZNF595_uc011but.1_Missense_Mutation_p.T233A	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	465					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		TACACGGTCCACAACACTGAA	0.393000													7	23					0	0	0	0
ZAR1	326340	broad.mit.edu	37	4	48496198	48496198	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr4:48496198C>T	uc003gyd.2	+	4	1212	c.1212C>T	c.(1210-1212)TGC>TGT	p.C404C		NM_175619	NP_783318	Q86SH2	ZAR1_HUMAN	zygote arrest 1	404					multicellular organismal development	cytoplasm|membrane	bile acid:sodium symporter activity				0						AAGATTTGTGCGGTAGATGCA	0.478000													14	62					0	0	0	0
ANKRD17	26057	broad.mit.edu	37	4	74007554	74007554	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr4:74007554G>C	uc003hgp.2	-	14	2353	c.2236C>G	c.(2236-2238)CGT>GGT	p.R746G	ANKRD17_uc003hgo.2_Missense_Mutation_p.R633G|ANKRD17_uc003hgq.2_Missense_Mutation_p.R746G|ANKRD17_uc003hgr.2_Missense_Mutation_p.R746G|ANKRD17_uc011cbd.1_Missense_Mutation_p.R311G	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	746					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			ACTGGTACACGAGGAGCCTAA	0.418000													7	27					0	0	0	0
ART3	419	broad.mit.edu	37	4	77033553	77033553	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr4:77033553C>T	uc003hjo.2	+	12	1170	c.1051C>T	c.(1051-1053)CCT>TCT	p.P351S	ART3_uc003hjk.2_Missense_Mutation_p.P329S|ART3_uc003hjn.2_Missense_Mutation_p.P340S|ART3_uc003hjp.2_RNA|ART3_uc010ijb.2_RNA|ART3_uc003hjq.2_RNA|ART3_uc003hjr.2_Missense_Mutation_p.P332S|ART3_uc010ijc.2_Missense_Mutation_p.P310S|ART3_uc010ijd.2_Missense_Mutation_p.P310S	NM_001130016	NP_001123488	Q13508	NAR3_HUMAN	ADP-ribosyltransferase 3 isoform a	351					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity			ovary(2)	2			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			AGGTCCAGTTCCTGTTCCAGG	0.403000													22	72					0	0	0	0
FRAS1	80144	broad.mit.edu	37	4	79455676	79455676	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr4:79455676C>G	uc003hlb.2	+	71	11439	c.10999C>G	c.(10999-11001)CAG>GAG	p.Q3667E		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3662	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CACTGAATTTCAGCTCTGCAA	0.418000													42	115					0	0	0	0
FAT1	2195	broad.mit.edu	37	4	187525003	187525003	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr4:187525003G>C	uc003izf.2	-	19	10865	c.10677C>G	c.(10675-10677)TAC>TAG	p.Y3559*		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3559	Extracellular (Potential).|Cadherin 33.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CGCCACCTGAGTATTCTTCTC	0.468000										HNSCC(5;0.00058)			15	23					0	0	0	0
ZFYVE16	9765	broad.mit.edu	37	5	79734575	79734575	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr5:79734575A>G	uc003kgr.3	+	4	2373	c.2071A>G	c.(2071-2073)ATA>GTA	p.I691V	ZFYVE16_uc010jak.1_Missense_Mutation_p.I691V|ZFYVE16_uc003kgp.2_Missense_Mutation_p.I691V|ZFYVE16_uc003kgq.3_Missense_Mutation_p.I691V|ZFYVE16_uc003kgs.3_Missense_Mutation_p.I691V	NM_001105251	NP_001098721	Q7Z3T8	ZFY16_HUMAN	zinc finger, FYVE domain containing 16	691					BMP signaling pathway|endosome transport|protein targeting to lysosome|regulation of endocytosis|vesicle organization	early endosome membrane	1-phosphatidylinositol binding|metal ion binding|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|protein transporter activity				0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.6e-46)|Epithelial(54;2.02e-41)|all cancers(79;5.05e-36)		CACTTGTGCTATAGATTCTAC	0.388000													16	35					0	0	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834543	101834543	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr5:101834543G>A	uc003knn.2	-	1	178	c.6C>T	c.(4-6)TTC>TTT	p.F2F	SLCO6A1_uc003kno.2_Silent_p.F2F|SLCO6A1_uc003knp.2_Silent_p.F2F|SLCO6A1_uc003knq.2_Silent_p.F2F	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	2	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CGACGCCTACGAACATGGCTC	0.711000													31	140					0	0	0	0
RAPGEF6	51735	broad.mit.edu	37	5	130764620	130764620	+	Silent	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr5:130764620C>G	uc003kvn.1	-	27	4961	c.4755G>C	c.(4753-4755)GTG>GTC	p.V1585V	RAPGEF6_uc003kvp.1_Silent_p.V1635V|RAPGEF6_uc003kvo.1_Intron|RAPGEF6_uc010jdi.1_Silent_p.V1593V|RAPGEF6_uc010jdj.1_Intron|RAPGEF6_uc003kvm.1_Silent_p.V508V	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	1585					Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		CTGCATCAGTCACATCTCCTA	0.418000													22	74					0	0	0	0
AFF4	27125	broad.mit.edu	37	5	132222032	132222032	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr5:132222032C>T	uc003kyd.2	-	18	3477	c.3069G>A	c.(3067-3069)AAG>AAA	p.K1023K	AFF4_uc011cxk.1_Silent_p.K701K	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	1023					transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCTTTGAGTACTTCAGAGCAT	0.473000													38	82					0	0	0	0
PHF15	23338	broad.mit.edu	37	5	133896507	133896507	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr5:133896507A>G	uc003kzo.1	+	6	723	c.544A>G	c.(544-546)ATG>GTG	p.M182V	PHF15_uc011cxt.1_Missense_Mutation_p.M182V|PHF15_uc003kzk.2_Missense_Mutation_p.M198V|PHF15_uc003kzl.2_Missense_Mutation_p.M182V|PHF15_uc003kzm.2_Missense_Mutation_p.M182V|PHF15_uc003kzn.2_Missense_Mutation_p.M182V	NM_015288	NP_056103	Q9NQC1	JADE2_HUMAN	PHD finger protein 15	182					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CCACCAGAATATGGCCAGGGC	0.617000													10	31					0	0	0	0
C5orf24	134553	broad.mit.edu	37	5	134190804	134190804	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr5:134190804A>G	uc003kzx.2	+	2	275	c.214A>G	c.(214-216)ATA>GTA	p.I72V	C5orf24_uc003kzy.3_Missense_Mutation_p.I72V|C5orf24_uc003kzz.2_Missense_Mutation_p.I72V	NM_152409	NP_689622	Q7Z6I8	CE024_HUMAN	hypothetical protein LOC134553	72											0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TGGCAGAAGCATAGAAATAAA	0.453000													28	55					0	0	0	0
ODZ2	57451	broad.mit.edu	37	5	167655115	167655115	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr5:167655115A>G	uc010jjd.2	+	25	5473	c.5473A>G	c.(5473-5475)ATC>GTC	p.I1825V	ODZ2_uc003lzr.3_Missense_Mutation_p.I1595V|ODZ2_uc003lzt.3_Missense_Mutation_p.I1198V|ODZ2_uc010jje.2_Missense_Mutation_p.I1089V	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CAAAGTCACCATCTTTGGCAG	0.498000													9	15					0	0	0	0
FOXI1	2299	broad.mit.edu	37	5	169535280	169535280	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr5:169535280C>T	uc003mai.3	+	2	847	c.802C>T	c.(802-804)CCC>TCC	p.P268S	FOXI1_uc003maj.3_Intron	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	268					epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGAGAAGCGGCCCTCCCCTCC	0.647000									Pendred_syndrome				17	63					0	0	0	0
ERVFRDE1	405754	broad.mit.edu	37	6	11105000	11105000	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr6:11105000G>A	uc003mzt.2	-	2	914	c.544C>T	c.(544-546)CAG>TAG	p.Q182*	LOC221710_uc003mzr.2_Intron|LOC221710_uc011dio.1_Intron	NM_207582	NP_997465	P60508	EFRD1_HUMAN	syncytin 2	182	Extracellular (Potential).					integral to membrane|plasma membrane|virion					0						AAAGTTCCCTGAGGAAAAGTA	0.453000													58	176					0	0	0	0
BTN1A1	696	broad.mit.edu	37	6	26509146	26509146	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr6:26509146C>G	uc003nif.3	+	7	1345	c.1325C>G	c.(1324-1326)TCT>TGT	p.S442C		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	442	B30.2/SPRY.|Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						AATGATGGATCTGATATCTAT	0.517000													11	37					0	0	0	0
VARS	7407	broad.mit.edu	37	6	31752260	31752260	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr6:31752260G>A	uc003nxe.2	-	12	1910	c.1487C>T	c.(1486-1488)ACA>ATA	p.T496I	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	496					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity	p.T496I(1)		upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	GGTGCGACCTGTCAGCTCCTT	0.587000													23	60					0	0	0	0
PTK7	5754	broad.mit.edu	37	6	43096755	43096755	+	Silent	SNP	C	T	T	rs140431672		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr6:43096755C>T	uc003oub.1	+	2	318	c.120C>T	c.(118-120)TCC>TCT	p.S40S	PTK7_uc003ouc.1_Silent_p.S40S|PTK7_uc003oud.1_Silent_p.S40S|PTK7_uc003oue.1_Silent_p.S40S|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Silent_p.S48S|PTK7_uc003oua.2_Silent_p.S40S	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	40	Ig-like C2-type 1.|Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			AGCCGTCCTCCCAGGATGCAC	0.637000													11	50					0	0	0	0
RNGTT	8732	broad.mit.edu	37	6	89650812	89650812	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr6:89650812G>C	uc003pmr.2	-	2	372	c.152C>G	c.(151-153)TCA>TGA	p.S51*	RNGTT_uc003pms.2_Nonsense_Mutation_p.S51*|RNGTT_uc011dzu.1_Intron|RNGTT_uc003pmt.2_Nonsense_Mutation_p.S51*	NM_003800	NP_003791	O60942	MCE1_HUMAN	RNA guanylyltransferase and 5'-phosphatase	51	TPase.				interspecies interaction between organisms|mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	GTP binding|mRNA guanylyltransferase activity|polynucleotide 5'-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.S51*(1)		upper_aerodigestive_tract(1)	1		all_cancers(76;4.07e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;6.86e-05)		BRCA - Breast invasive adenocarcinoma(108;0.151)		TAGGTAATTTGAGAGCATGCT	0.343000													15	60					0	0	0	0
ROS1	6098	broad.mit.edu	37	6	117710592	117710592	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr6:117710592G>A	uc003pxp.1	-	12	1879	c.1680C>T	c.(1678-1680)CGC>CGT	p.R560R	ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	560	Fibronectin type-III 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity	p.R560C(1)		lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GCTCCTGCGGGCGGCCTGGCA	0.552000			T	GOPC|ROS1	glioblastoma|NSCLC								26	83					0	0	0	0
C6orf115	58527	broad.mit.edu	37	6	139363993	139363993	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr6:139363993C>T	uc003qil.2	+	3	399	c.199C>T	c.(199-201)CTG>TTG	p.L67L	C6orf115_uc003qim.2_Silent_p.L67L	NM_021243	NP_067066	Q9P1F3	CF115_HUMAN	hypothetical protein LOC58527	67											0				GBM - Glioblastoma multiforme(68;0.000278)|OV - Ovarian serous cystadenocarcinoma(155;0.000413)		AGAGCTGCTTCTGCAAGGTGT	0.373000													34	101					0	0	0	0
GRM1	2911	broad.mit.edu	37	6	146720766	146720766	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr6:146720766A>G	uc010khw.1	+	8	3061	c.2591A>G	c.(2590-2592)AAG>AGG	p.K864R	GRM1_uc010khv.1_Missense_Mutation_p.K864R|GRM1_uc003qll.2_Missense_Mutation_p.K864R|GRM1_uc011edz.1_Missense_Mutation_p.K864R|GRM1_uc011eea.1_Missense_Mutation_p.K864R	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	864	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GGCGATGGCAAGCTGCCCTGC	0.493000													8	27					0	0	0	0
AKAP12	9590	broad.mit.edu	37	6	151672243	151672243	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr6:151672243T>C	uc011eep.1	+	4	2957	c.2717T>C	c.(2716-2718)ATT>ACT	p.I906T	AKAP12_uc003qoe.2_Missense_Mutation_p.I906T|AKAP12_uc003qof.2_Missense_Mutation_p.I808T|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Missense_Mutation_p.I801T	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	906					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding	p.I906T(1)		large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		GCTACCATTATTGAAGAAAGG	0.507000													15	41					0	0	0	0
SP8	221833	broad.mit.edu	37	7	20824320	20824321	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr7:20824320_20824321GC>AA	uc003suy.2	-	3	1302_1303	c.1061_1062GC>TT	c.(1060-1062)GGC>GTT	p.G354V	SP8_uc003suz.2_Missense_Mutation_p.G372V	NM_198956	NP_945194	Q8IXZ3	SP8_HUMAN	Sp8 transcription factor isoform 2	354	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						AGCTGTGCAGGCCCTTGCGCCG	0.718000													8	20					0	0	0	0
C7orf36	57002	broad.mit.edu	37	7	39606030	39606030	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr7:39606030C>T	uc003thc.3	+	1	22	c.13C>T	c.(13-15)CAA>TAA	p.Q5*		NM_020192	NP_064577	Q9NRH1	CG036_HUMAN	hypothetical protein LOC57002	5											0						GTCGTGGGTTCAAGCAGCCTC	0.622000													15	26					0	0	0	0
PCLO	27445	broad.mit.edu	37	7	82545553	82545553	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr7:82545553G>T	uc003uhx.2	-	7	12038	c.11749C>A	c.(11749-11751)CAG>AAG	p.Q3917K	PCLO_uc003uhv.2_Missense_Mutation_p.Q3917K|PCLO_uc010lec.2_Missense_Mutation_p.Q882K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3848	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAAACTTGCTGATGGTACAAA	0.463000													119	316					3.89651e-80	4.45851e-80	1	0
PRKAR2B	5577	broad.mit.edu	37	7	106781346	106781346	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr7:106781346G>A	uc003vdx.2	+	5	710	c.535G>A	c.(535-537)GAG>AAG	p.E179K		NM_002736	NP_002727	P31323	KAP3_HUMAN	cAMP-dependent protein kinase, regulatory	179	cAMP 1.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|transmembrane transport|water transport	centrosome|cytosol|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity			ovary(1)	1						CAAAGATGGGGAGCATGTAAT	0.328000													7	44					0	0	0	0
NDUFA5	4698	broad.mit.edu	37	7	123185711	123185711	+	Nonsense_Mutation	SNP	A	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr7:123185711A>C	uc003vks.2	-	4	312	c.203T>G	c.(202-204)TTA>TGA	p.L68*	NDUFA5_uc003vkr.2_RNA	NM_005000	NP_004991	Q16718	NDUA5_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	68					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0					NADH(DB00157)	TTGGTCTTCTAATTTTTTAAC	0.303000													3	82					0	0	0	0
NUP205	23165	broad.mit.edu	37	7	135279436	135279436	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr7:135279436G>C	uc003vsw.2	+	13	2003	c.1972G>C	c.(1972-1974)GAA>CAA	p.E658Q		NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	658					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						AAAATCTCCTGAAATTGCTGC	0.463000													20	48					0	0	0	0
KIAA1549	57670	broad.mit.edu	37	7	138602949	138602949	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr7:138602949C>G	uc011kql.1	-	2	1472	c.1423G>C	c.(1423-1425)GAG>CAG	p.E475Q	KIAA1549_uc003vuk.3_Missense_Mutation_p.E425Q|KIAA1549_uc011kqj.1_Missense_Mutation_p.E475Q	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	475						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GGATCTTCCTCAAATTCAGAG	0.483000			O	BRAF	pilocytic astrocytoma								14	31					0	0	0	0
PRSS1	5644	broad.mit.edu	37	7	142458409	142458409	+	Missense_Mutation	SNP	C	T	T	rs147886164	by1000genomes	TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr7:142458409C>T	uc003wak.2	+	2	61	c.44C>T	c.(43-45)GCT>GTT	p.A15V	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_Intron|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	15					digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			ACTCCAGTTGCTGCCCCCTTT	0.502000									Hereditary_Pancreatitis				42	222					0	0	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497609	1497609	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr8:1497609G>A	uc003wpl.2	+	2	847	c.750G>A	c.(748-750)GCG>GCA	p.A250A	DLGAP2_uc003wpm.2_Silent_p.A250A	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	329					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		ACCCCGACGCGCTGCAGAGCC	0.677000													36	65					0	0	0	0
VPS37A	137492	broad.mit.edu	37	8	17142026	17142026	+	Silent	SNP	A	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr8:17142026A>T	uc003wxj.2	+	10	1367	c.1014A>T	c.(1012-1014)GCA>GCT	p.A338A	VPS37A_uc003wxk.2_Silent_p.A313A|VPS37A_uc003wxl.2_Silent_p.A109A	NM_152415	NP_689628	Q8NEZ2	VP37A_HUMAN	hepatocellular carcinoma related protein 1	338	VPS37 C-terminal.				cellular membrane organization|endosome transport|protein transport	centrosome|late endosome membrane|nucleus					0				Colorectal(111;0.0553)|COAD - Colon adenocarcinoma(73;0.212)		AAGTAGCTGCACATGAAGCTG	0.393000													27	21					0	0	0	0
STC1	6781	broad.mit.edu	37	8	23709899	23709899	+	Splice_Site	SNP	T	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr8:23709899T>A	uc003xdw.1	-	2	403	c.119_splice	c.e2-1	p.A40_splice		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor						cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity	p.?(1)		skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		CCACTTCAGCTGAAAGAGACA	0.507000													19	34					0	0	0	0
ZFHX4	79776	broad.mit.edu	37	8	77768159	77768159	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr8:77768159G>A	uc003yav.2	+	10	9254	c.8867G>A	c.(8866-8868)GGA>GAA	p.G2956E	ZFHX4_uc003yau.1_Missense_Mutation_p.G3001E|ZFHX4_uc003yaw.1_Missense_Mutation_p.G2956E	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2956						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AATCAAGGCGGAACGGAAGGC	0.463000										HNSCC(33;0.089)			9	30					0	0	0	0
Unknown	0	broad.mit.edu	37	8	81471203	81471203	+	IGR	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr8:81471203G>C								ZBTB10 (36595 upstream) : ZNF704 (79566 downstream)																							TTGACTTCCAGATGGAACAGT	0.393000													4	38					0	0	0	0
CCNE2	9134	broad.mit.edu	37	8	95894373	95894373	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr8:95894373T>C	uc003yhc.2	-	11	1197	c.1088A>G	c.(1087-1089)TAT>TGT	p.Y363C	CCNE2_uc003yhd.2_Missense_Mutation_p.Y363C	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	363					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					CATAGCCAAATAGTTTGTATG	0.363000													21	76					0	0	0	0
VPS13B	157680	broad.mit.edu	37	8	100831673	100831673	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr8:100831673C>T	uc003yiv.2	+	48	8841	c.8730C>T	c.(8728-8730)CCC>CCT	p.P2910P	VPS13B_uc003yiw.2_Silent_p.P2885P	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2910					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			GTGCAGTTCCCATCTCAACAT	0.363000													7	60					0	0	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110456987	110456987	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr8:110456987G>C	uc003yne.2	+	38	4993	c.4889G>C	c.(4888-4890)AGG>ACG	p.R1630T		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1630	Extracellular (Potential).|IPT/TIG 8.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTTGGTATCAGGGAAACTGTC	0.413000										HNSCC(38;0.096)			67	293					0	0	0	0
CSMD3	114788	broad.mit.edu	37	8	114327022	114327022	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr8:114327022C>T	uc003ynu.2	-	2	338	c.179G>A	c.(178-180)GGA>GAA	p.G60E	CSMD3_uc003ynt.2_Missense_Mutation_p.G20E|CSMD3_uc011lhx.1_Missense_Mutation_p.G60E|CSMD3_uc010mcx.1_Missense_Mutation_p.G60E|CSMD3_uc003ynx.3_Missense_Mutation_p.G60E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	60	Helical; (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATAAATAAATCCTGCAACAAA	0.318000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			22	93					0	0	0	0
MTBP	27085	broad.mit.edu	37	8	121475947	121475947	+	Silent	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr8:121475947T>C	uc003ypc.1	+	10	1038	c.993T>C	c.(991-993)AGT>AGC	p.S331S	MTBP_uc011lie.1_RNA	NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	331					cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			TGACAAACAGTACCAAACAGA	0.343000													24	136					0	0	0	0
FAM84B	157638	broad.mit.edu	37	8	127569307	127569307	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr8:127569307C>A	uc003yrz.1	-	2	612	c.328G>T	c.(328-330)GAG>TAG	p.E110*		NM_174911	NP_777571	Q96KN1	FA84B_HUMAN	family with sequence similarity 84, member B	110						cytoplasm|plasma membrane	protein binding				0	Ovarian(5;9.43e-05)|Esophageal squamous(12;0.0012)|Hepatocellular(40;0.128)|Myeloproliferative disorder(2;0.135)		STAD - Stomach adenocarcinoma(47;0.000556)|Colorectal(2;0.0102)|Lung(2;0.0136)|READ - Rectum adenocarcinoma(2;0.0723)			AGCAGGTTCTCGGGCGTGTAG	0.617000													25	25					3.08376e-08	3.3513e-08	1	0
PLEC	5339	broad.mit.edu	37	8	144993792	144993792	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr8:144993792C>T	uc003zaf.1	-	32	10778	c.10608G>A	c.(10606-10608)GTG>GTA	p.V3536V	PLEC_uc003zab.1_Silent_p.V3399V|PLEC_uc003zac.1_Silent_p.V3403V|PLEC_uc003zad.2_Silent_p.V3399V|PLEC_uc003zae.1_Silent_p.V3367V|PLEC_uc003zag.1_Silent_p.V3377V|PLEC_uc003zah.2_Silent_p.V3385V|PLEC_uc003zaj.2_Silent_p.V3426V	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3536	Plectin 13.|Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GCACGGGGTCCACCAGGAAGC	0.692000													10	26					0	0	0	0
SLC24A2	25769	broad.mit.edu	37	9	19516220	19516220	+	Silent	SNP	G	C	C	rs41270119		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr9:19516220G>C	uc003zoa.1	-	10	1979	c.1917C>G	c.(1915-1917)CTC>CTG	p.L639L	SLC24A2_uc003zob.1_Silent_p.L622L	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	639	Helical; (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		ACACAAAGTAGAGGCCAAACA	0.488000													33	207					0	0	0	0
ZCCHC6	79670	broad.mit.edu	37	9	88961250	88961250	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr9:88961250C>G	uc004aoq.2	-	3	881	c.666G>C	c.(664-666)GAG>GAC	p.E222D	ZCCHC6_uc011ltf.1_RNA|ZCCHC6_uc004aor.2_RNA|ZCCHC6_uc004aos.2_RNA|ZCCHC6_uc004aot.2_Missense_Mutation_p.E222D|ZCCHC6_uc004aou.2_Missense_Mutation_p.E222D|ZCCHC6_uc004aov.2_Missense_Mutation_p.E222D|ZCCHC6_uc004aow.2_Missense_Mutation_p.E222D	NM_024617	NP_078893	Q5VYS8	TUT7_HUMAN	zinc finger, CCHC domain containing 6	222					RNA 3'-end processing		nucleic acid binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)	2						TCTTCAGTCTCTCCTCAGCCT	0.423000													30	134					0	0	0	0
Unknown	0	broad.mit.edu	37	9	98775038	98775038	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr9:98775038C>T	uc010msa.1	+	4	2025	c.1149C>T	c.(1147-1149)GAC>GAT	p.D383D	uc011lun.1_Intron					RecName: Full=Uncharacterized protein C9orf102;																		CCATGAAAGACCAACAGGACC	0.423000													9	35					0	0	0	0
GRIN3A	116443	broad.mit.edu	37	9	104433149	104433149	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr9:104433149C>G	uc004bbp.1	-	3	2146	c.1545G>C	c.(1543-1545)TTG>TTC	p.L515F	GRIN3A_uc004bbq.1_Missense_Mutation_p.L515F	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	515	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	TAACCACTCTCAAGTGTAGCT	0.507000													26	142					0	0	0	0
CYLC2	1539	broad.mit.edu	37	9	105767470	105767470	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr9:105767470A>G	uc004bbs.2	+	5	627	c.557A>G	c.(556-558)AAG>AGG	p.K186R		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	186	3 X approximate tandem repeats.|31 X 3 AA repeats of K-K-X.|2.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				ggaggtgcaaagaaagataac	0.139000													6	12					0	0	0	0
GLE1	2733	broad.mit.edu	37	9	131285595	131285595	+	Silent	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr9:131285595A>G	uc004bvj.2	+	5	732	c.618A>G	c.(616-618)AAA>AAG	p.K206K	GLE1_uc004bvi.2_Silent_p.K206K|GLE1_uc010myd.2_5'UTR	NM_001003722	NP_001003722	Q53GS7	GLE1_HUMAN	GLE1 RNA export mediator homolog isoform 1	206	Potential.				poly(A)+ mRNA export from nucleus|protein transport|transmembrane transport	cytoplasm|nuclear pore	protein binding				0						AGAAGCTAAAAGCTGAGCACC	0.473000													3	86					0	0	0	0
SARDH	1757	broad.mit.edu	37	9	136582547	136582547	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr9:136582547C>A	uc004cep.3	-	8	1185	c.1051G>T	c.(1051-1053)GAC>TAC	p.D351Y	SARDH_uc004ceo.2_Missense_Mutation_p.D351Y|SARDH_uc011mdn.1_Missense_Mutation_p.D351Y|SARDH_uc011mdo.1_Missense_Mutation_p.D183Y	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	351					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		CAGTCCAGGTCAAAGAGGCCG	0.597000													10	43					2.80697e-09	3.07862e-09	1	0
NLGN4X	57502	broad.mit.edu	37	X	6069124	6069124	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:6069124A>C	uc010ndh.2	-	2	885	c.384T>G	c.(382-384)TTT>TTG	p.F128L	NLGN4X_uc004crp.2_Missense_Mutation_p.F128L|NLGN4X_uc004crq.2_Missense_Mutation_p.F128L|NLGN4X_uc010ndi.2_Missense_Mutation_p.F128L|NLGN4X_uc004crr.2_Missense_Mutation_p.F128L|NLGN4X_uc010ndj.2_Missense_Mutation_p.F128L	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	128	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						AATTGGCGGTAAACCAGATGG	0.478000													25	90					0	0	0	0
TBL1X	6907	broad.mit.edu	37	X	9652149	9652149	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:9652149C>T	uc010ndq.2	+	6	646	c.278C>T	c.(277-279)ACG>ATG	p.T93M	TBL1X_uc004csq.3_Missense_Mutation_p.T42M|TBL1X_uc010ndr.2_Missense_Mutation_p.T42M|TBL1X_uc004csr.2_Missense_Mutation_p.T93M|TBL1X_uc004css.2_Missense_Mutation_p.T44M	NM_001139466	NP_001132938	O60907	TBL1X_HUMAN	transducin beta-like 1X isoform a	93	F-box-like.				canonical Wnt receptor signaling pathway|cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|sensory perception of sound|transcription, DNA-dependent	spindle microtubule|transcriptional repressor complex	beta-catenin binding|histone binding|protein C-terminus binding|protein domain specific binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Hepatocellular(5;0.000888)				ATCAATGGGACGCTAGTGCCA	0.567000													16	60					0	0	0	0
OFD1	8481	broad.mit.edu	37	X	13769430	13769430	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:13769430A>G	uc004cvp.3	+	10	1357	c.998A>G	c.(997-999)CAG>CGG	p.Q333R	OFD1_uc004cvr.3_5'UTR|OFD1_uc011mil.1_5'UTR|OFD1_uc004cvq.3_Missense_Mutation_p.Q193R|OFD1_uc010nen.2_Missense_Mutation_p.Q332R|OFD1_uc004cvs.3_Intron|OFD1_uc004cvu.3_Intron|OFD1_uc004cvv.3_Intron|OFD1_uc010neo.1_Intron	NM_003611	NP_003602	O75665	OFD1_HUMAN	oral-facial-digital syndrome 1	333	Potential.				cilium movement involved in determination of left/right asymmetry|G2/M transition of mitotic cell cycle	centriole|cilium|cytosol|microtubule basal body|nuclear membrane	alpha-tubulin binding|gamma-tubulin binding				0						AGACAGGAGCAGAATATAAAG	0.303000													24	48					0	0	0	0
PRDX4	10549	broad.mit.edu	37	X	23700515	23700515	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:23700515G>A	uc004dam.2	+	5	645	c.602G>A	c.(601-603)GGT>GAT	p.G201D		NM_006406	NP_006397	Q13162	PRDX4_HUMAN	peroxiredoxin 4	201	Thioredoxin.				cell redox homeostasis|I-kappaB phosphorylation		thioredoxin peroxidase activity	p.G201D(1)		upper_aerodigestive_tract(1)	1						TTTTACAGAGGTCTCTTCATT	0.373000													12	37					0	0	0	0
FAM47C	442444	broad.mit.edu	37	X	37027222	37027222	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:37027222C>T	uc004ddl.1	+	1	753	c.739C>T	c.(739-741)CGC>TGC	p.R247C		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	247										ovary(3)	3						GTCCCATCTCCGCCCAGAGCC	0.627000													18	66					0	0	0	0
NDUFB11	54539	broad.mit.edu	37	X	47002066	47002066	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:47002066G>A	uc004dhd.2	-	2	816	c.285C>T	c.(283-285)GTC>GTT	p.V95V	NDUFB11_uc004dhc.2_Silent_p.V95V|RBM10_uc004dhe.1_5'Flank|RBM10_uc004dhf.2_5'Flank|RBM10_uc004dhg.2_5'Flank|RBM10_uc004dhh.2_5'Flank|RBM10_uc010nhq.2_5'Flank|RBM10_uc004dhi.2_5'Flank	NM_001135998	NP_001129470	Q9NX14	NDUBB_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	95	Helical; (Potential).				respiratory electron transport chain|transport	integral to membrane|mitochondrial respiratory chain complex I					0						GGATGATGGAGACGCCAAAGA	0.537000													27	61					0	0	0	0
HDAC6	10013	broad.mit.edu	37	X	48665100	48665100	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:48665100A>T	uc011mmi.1	+	8	714	c.619A>T	c.(619-621)ATG>TTG	p.M207L	HDAC6_uc004dks.1_Missense_Mutation_p.M207L|HDAC6_uc010nig.1_Missense_Mutation_p.M55L|HDAC6_uc004dkt.1_Missense_Mutation_p.M207L|HDAC6_uc004dku.3_3'UTR|HDAC6_uc011mmj.1_Missense_Mutation_p.M152L|HDAC6_uc011mmk.1_Missense_Mutation_p.M188L	NM_006044	NP_006035	Q9UBN7	HDAC6_HUMAN	histone deacetylase 6	207	Histone deacetylase 1.				aggresome assembly|cellular response to hydrogen peroxide|Hsp90 deacetylation|lysosome localization|macroautophagy|misfolded or incompletely synthesized protein catabolic process|negative regulation of proteolysis|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|polyubiquitinated misfolded protein transport|positive regulation of apoptosis|positive regulation of cellular chaperone-mediated protein complex assembly|positive regulation of epithelial cell migration|positive regulation of receptor biosynthetic process|positive regulation of signal transduction|regulation of androgen receptor signaling pathway|regulation of receptor activity|response to growth factor stimulus|response to toxin|transcription, DNA-dependent|tubulin deacetylation	aggresome|caveola|cell leading edge|cytosol|histone deacetylase complex|microtubule associated complex|perinuclear region of cytoplasm	actin binding|alpha-tubulin binding|beta-catenin binding|dynein complex binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|Hsp90 protein binding|microtubule binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|polyubiquitin binding|tau protein binding|tubulin deacetylase activity|zinc ion binding	p.M207L(1)		ovary(3)|upper_aerodigestive_tract(1)	4					Vorinostat(DB02546)	CCGGAATGGCATGGCCATCAT	0.473000													13	31					0	0	0	0
HEPH	9843	broad.mit.edu	37	X	65392280	65392280	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:65392280A>T	uc011moz.1	+	3	320	c.260A>T	c.(259-261)GAC>GTC	p.D87V	HEPH_uc004dwn.2_Missense_Mutation_p.D87V|HEPH_uc004dwo.2_5'UTR|HEPH_uc010nkr.2_Missense_Mutation_p.D87V|HEPH_uc011mpa.1_Missense_Mutation_p.D87V	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	84	Extracellular (Potential).|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						TACAAGGATGACTCATACACA	0.478000													13	41					0	0	0	0
HEPH	9843	broad.mit.edu	37	X	65393633	65393633	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:65393633C>T	uc011moz.1	+	4	684	c.624C>T	c.(622-624)ACC>ACT	p.T208T	HEPH_uc004dwn.2_Silent_p.T208T|HEPH_uc004dwo.2_5'UTR|HEPH_uc010nkr.2_Silent_p.T208T|HEPH_uc011mpa.1_Silent_p.T208T	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	205	Extracellular (Potential).|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						CTCTCATCACCTGTAAAAGAG	0.498000													5	13					0	0	0	0
TAF1	6872	broad.mit.edu	37	X	70612527	70612527	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:70612527T>A	uc004dzu.3	+	19	2938	c.2887T>A	c.(2887-2889)TTC>ATC	p.F963I	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.F984I|TAF1_uc004dzv.3_Missense_Mutation_p.F137I	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	963					G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				TGGTGAAGGATTCTCCTATGT	0.488000													17	78					0	0	0	0
GPR174	84636	broad.mit.edu	37	X	78427029	78427029	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:78427029G>C	uc004edg.1	+	1	561	c.525G>C	c.(523-525)AGG>AGC	p.R175S		NM_032553	NP_115942	Q9BXC1	GP174_HUMAN	putative purinergic receptor FKSG79	175	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)|central_nervous_system(1)	2						TTCCTACCAGGAATGTCAACC	0.483000										HNSCC(63;0.18)			19	64					0	0	0	0
TBX22	50945	broad.mit.edu	37	X	79283536	79283536	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:79283536T>C	uc010nmg.1	+	8	1044	c.910T>C	c.(910-912)TTC>CTC	p.F304L	TBX22_uc004edi.1_Missense_Mutation_p.F184L|TBX22_uc004edj.1_Missense_Mutation_p.F304L	NM_001109878	NP_001103348	Q9Y458	TBX22_HUMAN	T-box 22 isoform 1	304					multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(7)|large_intestine(3)|central_nervous_system(2)|breast(1)|skin(1)|ovary(1)	15						GAGGCCTTCTTTCACTCTCGA	0.368000													13	56					0	0	0	0
HDX	139324	broad.mit.edu	37	X	83724401	83724401	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:83724401T>C	uc004eek.1	-	3	439	c.330A>G	c.(328-330)ATA>ATG	p.I110M	HDX_uc011mqv.1_Missense_Mutation_p.I110M|HDX_uc004eel.1_Missense_Mutation_p.I52M	NM_144657	NP_653258	Q7Z353	HDX_HUMAN	highly divergent homeobox	110						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.I110M(1)		upper_aerodigestive_tract(1)|ovary(1)	2						CTGGACTGTATATACCAGTTA	0.408000													28	89					0	0	0	0
TCEAL7	56849	broad.mit.edu	37	X	102586386	102586386	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:102586386A>T	uc004ekc.1	+	3	268	c.55A>T	c.(55-57)AGG>TGG	p.R19W		NM_152278	NP_689491	Q9BRU2	TCAL7_HUMAN	transcription elongation factor A (SII)-like 7	19					negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus		p.R19W(1)		upper_aerodigestive_tract(1)	1						cgtgccaaagagggaggaaaa	0.050000													3	8					0	0	0	0
VSIG1	340547	broad.mit.edu	37	X	107301344	107301344	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:107301344C>G	uc004eno.2	+	2	287	c.126C>G	c.(124-126)ATC>ATG	p.I42M	VSIG1_uc011msk.1_Missense_Mutation_p.I42M	NM_182607	NP_872413	Q86XK7	VSIG1_HUMAN	V-set and immunoglobulin domain containing 1	42	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane		p.I42M(2)		upper_aerodigestive_tract(1)|ovary(1)	2						TCACTCTCATCTGCATCTACA	0.448000													19	56					0	0	0	0
IL13RA2	3598	broad.mit.edu	37	X	114238663	114238663	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:114238663C>T	uc004epx.2	-	10	1248	c.1123G>A	c.(1123-1125)GAA>AAA	p.E375K		NM_000640	NP_000631	Q14627	I13R2_HUMAN	interleukin 13 receptor, alpha 2 precursor	375	Cytoplasmic (Potential).					extracellular space|integral to membrane|soluble fraction	cytokine receptor activity	p.E375K(1)		upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3						CAGAAAAATTCTGGAATCTAG	0.333000													6	16					0	0	0	0
IGSF1	3547	broad.mit.edu	37	X	130415220	130415220	+	Silent	SNP	T	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:130415220T>G	uc004ewd.2	-	9	1856	c.1618A>C	c.(1618-1620)AGG>CGG	p.R540R	IGSF1_uc004ewe.3_Silent_p.R529R|IGSF1_uc004ewf.2_Silent_p.R520R	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	540	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						CACTTCCACCTTATCCACAGC	0.493000													78	215					0	0	0	0
MCF2	4168	broad.mit.edu	37	X	138686866	138686866	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:138686866T>A	uc004fau.2	-	15	2011	c.1717A>T	c.(1717-1719)AGA>TGA	p.R573*	MCF2_uc004fav.2_Nonsense_Mutation_p.R589*|MCF2_uc011mwl.1_Nonsense_Mutation_p.R550*|MCF2_uc010nsh.1_Nonsense_Mutation_p.R573*|MCF2_uc011mwm.1_Nonsense_Mutation_p.R534*|MCF2_uc011mwn.1_Nonsense_Mutation_p.R718*|MCF2_uc004faw.2_Nonsense_Mutation_p.R633*|MCF2_uc011mwo.1_Nonsense_Mutation_p.R649*	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	573	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					GGTCCCACTCTTTCTGGAGCA	0.308000													8	14					0	0	0	0
HCFC1	3054	broad.mit.edu	37	X	153227686	153227686	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:153227686T>C	uc004fjp.2	-	5	1312	c.784A>G	c.(784-786)ACC>GCC	p.T262A		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	262	Kelch 4.				cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TTTCCGATGGTGGTTGCCGAG	0.587000													3	30					0	0	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946434	16946434	+	RNA	SNP	C	T	T	rs367060		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:16946434C>T	uc010ocf.1	-	3		c.464G>A			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						CTCAGCCTTCCGCCGGGCCAG	0.672000													4	19					0	0	0	0
RNF220	55182	broad.mit.edu	37	1	44878151	44878151	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:44878151G>A	uc001clv.1	+	2	742	c.382G>A	c.(382-384)GAC>AAC	p.D128N	RNF220_uc001clw.1_Missense_Mutation_p.D128N	NM_018150	NP_060620	Q5VTB9	RN220_HUMAN	ring finger protein 220	128					protein autoubiquitination	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CTCCACCGAGGACCGGGAGAG	0.552000													25	95					0	0	0	0
C1orf163	65260	broad.mit.edu	37	1	53158471	53158471	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:53158471T>C	uc001cui.1	-	2	215	c.175A>G	c.(175-177)AAG>GAG	p.K59E		NM_023077	NP_075565	Q96BR5	SELR1_HUMAN	hypothetical protein LOC65260	59	Sel1-like 1.						binding				0						CAGTTAAACTTCAACACCTTG	0.498000													22	67					0	0	0	0
HOOK1	51361	broad.mit.edu	37	1	60309235	60309235	+	Silent	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:60309235A>G	uc009wad.2	+	10	855	c.753A>G	c.(751-753)CAA>CAG	p.Q251Q	HOOK1_uc001czo.2_Silent_p.Q251Q|HOOK1_uc001czp.2_RNA|HOOK1_uc010oor.1_Silent_p.Q209Q	NM_015888	NP_056972	Q9UJC3	HOOK1_HUMAN	hook homolog 1	251	Potential.|Sufficient for interaction with microtubules.				early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|multicellular organismal development|protein transport	FHF complex|microtubule	identical protein binding			ovary(1)|breast(1)	2	all_cancers(7;0.000129)					TTCATGCACAATTACAACTAG	0.333000													14	31					0	0	0	0
WDR63	126820	broad.mit.edu	37	1	85547058	85547058	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:85547058C>A	uc001dkt.2	+	4	436	c.245C>A	c.(244-246)GCT>GAT	p.A82D	WDR63_uc009wcl.2_Missense_Mutation_p.A82D	NM_145172	NP_660155	Q8IWG1	WDR63_HUMAN	WD repeat domain 63	82								p.A82D(1)		upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				all cancers(265;0.00391)|Epithelial(280;0.00922)|Colorectal(170;0.166)		CGCAACAGAGCTGCAGTATCT	0.368000													13	50					0.000308642	0.000329591	1	0
SASS6	163786	broad.mit.edu	37	1	100591488	100591488	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:100591488T>C	uc001dsu.2	-	2	217	c.76A>G	c.(76-78)ATA>GTA	p.I26V	SASS6_uc009wdz.2_5'UTR	NM_194292	NP_919268	Q6UVJ0	SAS6_HUMAN	spindle assembly abnormal protein 6	26					centriole replication	centriole		p.I26V(1)		upper_aerodigestive_tract(1)|ovary(1)	2		all_epithelial(167;4.58e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.085)|all cancers(265;0.139)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.197)		CTCATTCTTATACTTACTCTC	0.333000													22	58					0	0	0	0
VAV3	10451	broad.mit.edu	37	1	108116684	108116684	+	Silent	SNP	T	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:108116684T>A	uc001dvk.1	-	26	2541	c.2487A>T	c.(2485-2487)GGA>GGT	p.G829G	VAV3_uc010ouu.1_Silent_p.G261G|VAV3_uc001dvj.1_Silent_p.G269G|VAV3_uc010ouv.1_Silent_p.G233G|VAV3_uc010ouw.1_Silent_p.G857G	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	829	SH3 2.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		CATTTACTTCTCCTCTCCACC	0.483000													47	209					0	0	0	0
LRIG2	9860	broad.mit.edu	37	1	113657294	113657294	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:113657294C>T	uc001edf.1	+	15	2524	c.2326C>T	c.(2326-2328)CGT>TGT	p.R776C	LRIG2_uc009wgn.1_Missense_Mutation_p.R673C	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	776	Ig-like C2-type 3.|Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		TGGGACAGAACGTGGCCACAT	0.463000													25	104					0	0	0	0
HIPK1	204851	broad.mit.edu	37	1	114499830	114499830	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:114499830C>T	uc001eem.2	+	7	1838	c.1677C>T	c.(1675-1677)TTC>TTT	p.F559F	HIPK1_uc001eel.2_Silent_p.F559F|HIPK1_uc001een.2_Silent_p.F559F|HIPK1_uc001eeo.2_Silent_p.F185F|HIPK1_uc001eep.2_Silent_p.F165F	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	559					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGAGTCCCTTCACTACACATG	0.393000													12	43					0	0	0	0
IGSF3	3321	broad.mit.edu	37	1	117158883	117158883	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:117158883G>A	uc001egr.1	-	3	945	c.240C>T	c.(238-240)CCC>CCT	p.P80P	IGSF3_uc001egq.1_Silent_p.P80P	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	80	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		AGATGGCATAGGGGAAGGAAG	0.557000													6	41					0	0	0	0
CHD1L	9557	broad.mit.edu	37	1	146739091	146739091	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:146739091T>G	uc001epm.3	+	9	965	c.902T>G	c.(901-903)TTT>TGT	p.F301C	uc001epp.2_Intron|CHD1L_uc001epn.3_Missense_Mutation_p.F188C|CHD1L_uc010ozo.1_RNA|CHD1L_uc009wjg.2_RNA|CHD1L_uc009wjh.2_Missense_Mutation_p.F301C|CHD1L_uc010ozp.1_Missense_Mutation_p.F20C|CHD1L_uc001epo.3_Missense_Mutation_p.F97C|CHD1L_uc010ozq.1_Translation_Start_Site|CHD1L_uc009wji.2_Missense_Mutation_p.F20C	NM_004284	NP_004275	Q86WJ1	CHD1L_HUMAN	chromodomain helicase DNA binding protein	301					chromatin remodeling|DNA repair	cytoplasm|nucleus|plasma membrane	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding	p.F301C(1)		ovary(3)|lung(2)|upper_aerodigestive_tract(1)	6	all_hematologic(923;0.0487)					TCAGATGCATTTGAAAATGAG	0.353000													9	28					0	0	0	0
HRNR	388697	broad.mit.edu	37	1	152188024	152188024	+	Silent	SNP	C	T	T	rs142170860		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:152188024C>T	uc001ezt.1	-	3	6157	c.6081G>A	c.(6079-6081)TCG>TCA	p.S2027S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2027	22.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGCCACAGCTCGATGACTGTC	0.562000													93	667					0	0	0	0
APCS	325	broad.mit.edu	37	1	159558171	159558171	+	Silent	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:159558171G>C	uc001ftv.2	+	2	441	c.345G>C	c.(343-345)GTG>GTC	p.V115V		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	115	Pentaxin.				acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					ACATCTGTGTGAGCTGGGAGT	0.433000													12	55					0	0	0	0
ITLN1	55600	broad.mit.edu	37	1	160850996	160850996	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:160850996G>T	uc001fxc.2	-	5	628	c.512C>A	c.(511-513)ACG>AAG	p.T171K		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	171	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding	p.T171T(1)|p.T171K(1)		ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			GCCAGTGTCCGTGCGGTACCT	0.562000													30	92					1.30897e-18	1.46406e-18	1	0
NUF2	83540	broad.mit.edu	37	1	163325191	163325191	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:163325191G>T	uc001gcq.1	+	14	1627	c.1327G>T	c.(1327-1329)GAC>TAC	p.D443Y	NUF2_uc001gcr.1_Missense_Mutation_p.D443Y|NUF2_uc009wvc.1_Missense_Mutation_p.D396Y	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component	443	Interaction with the C-terminus of NDC80 and the SPBC24-SPBC25 subcomplex.|Potential.				cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					GGCAGCAGAGGACTCCTATGC	0.338000													9	25					0.000442599	0.000470511	1	0
ZC3H11A	9877	broad.mit.edu	37	1	203821425	203821425	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:203821425A>G	uc001hac.2	+	20	2947	c.2331A>G	c.(2329-2331)ATA>ATG	p.I777M	ZC3H11A_uc001had.2_Missense_Mutation_p.I777M|ZC3H11A_uc001hae.2_Missense_Mutation_p.I777M|ZC3H11A_uc001haf.2_Missense_Mutation_p.I777M|ZC3H11A_uc010pqm.1_Missense_Mutation_p.I723M	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	777							nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			AGAAACTAATATGGGAGATTT	0.468000													17	42					0	0	0	0
MARK1	4139	broad.mit.edu	37	1	220804398	220804398	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:220804398A>T	uc001hmn.3	+	10	1528	c.931A>T	c.(931-933)ATG>TTG	p.M311L	MARK1_uc009xdw.2_Missense_Mutation_p.M311L|MARK1_uc010pun.1_Missense_Mutation_p.M311L|MARK1_uc001hmm.3_Missense_Mutation_p.M289L	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	311	Protein kinase.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		AGATCGATGGATGAATGTTGG	0.338000													7	22					0	0	0	0
TARBP1	6894	broad.mit.edu	37	1	234596074	234596074	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:234596074G>T	uc001hwd.2	-	7	1468	c.1468C>A	c.(1468-1470)CTA>ATA	p.L490I		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	490					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			GCCTTAGATAGAAACAAAATG	0.373000													12	36					6.31663e-08	6.83818e-08	1	0
OR11L1	391189	broad.mit.edu	37	1	248004351	248004352	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:248004351_248004352GG>TT	uc001idn.1	-	1	847_848	c.847_848CC>AA	c.(847-849)CCA>AAA	p.P283K		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GTTCAGCAGTGGTGTGACCACA	0.441000													17	59					0	0	0	0
OR2M5	127059	broad.mit.edu	37	1	248309150	248309150	+	Missense_Mutation	SNP	G	A	A	rs147580819		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:248309150G>A	uc010pze.1	+	1	701	c.701G>A	c.(700-702)CGT>CAT	p.R234H		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			GGAGAGGGTCGTCGCAAAGCT	0.463000													73	182					0	0	0	0
SFMBT2	57713	broad.mit.edu	37	10	7214579	7214579	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr10:7214579C>T	uc009xio.1	-	18	2120	c.2029G>A	c.(2029-2031)GGG>AGG	p.G677R	SFMBT2_uc001ijn.1_Missense_Mutation_p.G677R|SFMBT2_uc010qay.1_Missense_Mutation_p.G512R	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	677					regulation of transcription, DNA-dependent	nucleus		p.G677R(1)		ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						TTGCTTTCCCCGATGGGGGGC	0.517000													23	52					0	0	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453000													5	66					0	0	0	0
IPMK	253430	broad.mit.edu	37	10	59976032	59976032	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr10:59976032G>A	uc001jkb.2	-	4	743	c.420C>T	c.(418-420)CCC>CCT	p.P140P		NM_152230	NP_689416	Q8NFU5	IPMK_HUMAN	inositol polyphosphate multikinase	140	Substrate binding (By similarity).					nucleus	ATP binding|inositol trisphosphate 6-kinase activity			ovary(1)	1						CCATTATACAGGGCTTATTAA	0.328000													9	38					0	0	0	0
SGPL1	8879	broad.mit.edu	37	10	72631612	72631612	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr10:72631612A>G	uc001jrm.2	+	11	1150	c.928A>G	c.(928-930)ATA>GTA	p.I310V	SGPL1_uc009xqk.2_RNA	NM_003901	NP_003892	O95470	SGPL1_HUMAN	sphingosine-1-phosphate lyase 1	310	Cytoplasmic (Potential).				apoptosis|carboxylic acid metabolic process|ceramide metabolic process|sphingolipid catabolic process	integral to endoplasmic reticulum membrane	carboxy-lyase activity|pyridoxal phosphate binding|sphinganine-1-phosphate aldolase activity				0					Pyridoxal Phosphate(DB00114)	CAAATACAAAATACCCCTTCA	0.433000													19	68					0	0	0	0
DLG5	9231	broad.mit.edu	37	10	79576322	79576322	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr10:79576322G>A	uc001jzk.2	-	20	4082	c.4012C>T	c.(4012-4014)CGG>TGG	p.R1338W	DLG5_uc001jzi.2_Missense_Mutation_p.R93W|DLG5_uc001jzj.2_Missense_Mutation_p.R753W|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Missense_Mutation_p.R942W	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1338					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TCCTTTCTCCGCTCCCCGAGG	0.637000													10	64					0	0	0	0
MBL1P	8512	broad.mit.edu	37	10	81667510	81667510	+	RNA	SNP	C	T	T	rs71481541	by1000genomes	TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr10:81667510C>T	uc001kbf.2	+	3		c.448C>T								Homo sapiens mannose-binding protein-A pseudogene (MBL1P1) mRNA sequence.												0						GTAGTGGTGACGGGGCCTCCA	0.448000													4	76					0	0	0	0
BTAF1	9044	broad.mit.edu	37	10	93740247	93740247	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr10:93740247A>T	uc001khr.2	+	15	1785	c.1687A>T	c.(1687-1689)ATG>TTG	p.M563L	BTAF1_uc001khs.1_Missense_Mutation_p.M233L|BTAF1_uc001kht.1_Missense_Mutation_p.M1L	NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	563	HEAT 4.				negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				ACTGCCTGATATGCTCCGACA	0.373000													11	45					0	0	0	0
PDE6C	5146	broad.mit.edu	37	10	95399902	95399902	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr10:95399902G>A	uc001kiu.3	+	12	1696	c.1558G>A	c.(1558-1560)GGA>AGA	p.G520R		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	520					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				TACAGAGCACGGATTGATTAA	0.403000													30	71					0	0	0	0
IKZF5	64376	broad.mit.edu	37	10	124758050	124758050	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr10:124758050C>G	uc001lha.2	-	3	391	c.92G>C	c.(91-93)GGA>GCA	p.G31A		NM_022466	NP_071911	Q9H5V7	IKZF5_HUMAN	zinc finger protein, subfamily 1A, 5	31					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_neural(114;0.169)|Colorectal(57;0.178)|Glioma(114;0.222)		Colorectal(40;0.0701)|COAD - Colon adenocarcinoma(40;0.0754)		ACTAACTGATCCAGAAATCAT	0.403000													19	61					0	0	0	0
RIC8A	60626	broad.mit.edu	37	11	209939	209939	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:209939T>C	uc001log.2	+	3	990	c.665T>C	c.(664-666)ATG>ACG	p.M222T	BET1L_uc001loe.2_5'Flank|BET1L_uc001lod.2_5'Flank|RIC8A_uc001lof.2_Missense_Mutation_p.M222T|RIC8A_uc001loh.2_Missense_Mutation_p.M215T	NM_021932	NP_068751	Q9NPQ8	RIC8A_HUMAN	resistance to inhibitors of cholinesterase 8	222						cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity				0		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.45e-27)|Epithelial(43;2.94e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.86e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		GAGCGGGCCATGGAGATCCTC	0.587000													7	33					0	0	0	0
OR52A1	23538	broad.mit.edu	37	11	5173296	5173296	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:5173296G>A	uc010qyy.1	-	1	304	c.304C>T	c.(304-306)CAA>TAA	p.Q102*		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AACCACATTTGAAGCAAGCAG	0.458000													8	23					0	0	0	0
NLRP14	338323	broad.mit.edu	37	11	7064378	7064378	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:7064378C>A	uc001mfb.1	+	4	1444	c.1121C>A	c.(1120-1122)GCC>GAC	p.A374D		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	374	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GTGTGCTGGGCCGCTTGTACT	0.453000													38	109					3.21399e-22	3.64665e-22	1	0
SBF2	81846	broad.mit.edu	37	11	10215531	10215531	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:10215531G>A	uc001mib.2	-	2	197	c.59C>T	c.(58-60)TCA>TTA	p.S20L	SBF2_uc001mif.3_5'UTR	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	20	UDENN.				myelination	cytoplasm|membrane	phosphatase activity|protein binding	p.S20L(1)		upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		ACCTTCTCCTGATCCTGTTAA	0.333000													3	15					0	0	0	0
NAV2	89797	broad.mit.edu	37	11	20136232	20136233	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:20136232_20136233CC>TT	uc001mpr.3	+	37	7425_7426	c.7064_7065CC>TT	c.(7063-7065)CCC>CTT	p.P2355L	NAV2_uc001mpp.2_Missense_Mutation_p.P2288L|NAV2_uc009yhx.2_Missense_Mutation_p.P1416L|NAV2_uc009yhz.2_Missense_Mutation_p.P997L|NAV2_uc001mpu.2_Missense_Mutation_p.P790L|NAV2_uc001mpv.2_Missense_Mutation_p.P114L	NM_182964	NP_892009	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 1	2411						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						GAGTGGCCTCCCCTGCTGCAGT	0.614000													13	24					0	0	0	0
C11orf74	119710	broad.mit.edu	37	11	36654876	36654876	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:36654876C>T	uc001mwy.1	+	3	252	c.179C>T	c.(178-180)TCA>TTA	p.S60L	C11orf74_uc010rfd.1_RNA|C11orf74_uc001mww.1_Intron|C11orf74_uc001mwx.1_Intron|C11orf74_uc001mwz.1_Intron|C11orf74_uc010rfe.1_RNA	NM_138787	NP_620142	Q86VG3	CK074_HUMAN	hypothetical protein LOC119710	60											0	all_lung(20;0.226)	all_hematologic(20;0.0118)				ACTGATTCTTCAGAAAACATT	0.338000													8	34					0	0	0	0
AHNAK	79026	broad.mit.edu	37	11	62285788	62285788	+	Silent	SNP	T	C	C	rs146188257		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:62285788T>C	uc001ntl.2	-	5	16401	c.16101A>G	c.(16099-16101)GGA>GGG	p.G5367G	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	5367					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GCAGGCTTGGTCCCCTCAGTG	0.547000													21	70					0	0	0	0
MALAT1	378938	broad.mit.edu	37	11	65266549	65266549	+	RNA	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:65266549T>C	uc010roh.1	+	1		c.1317T>C				NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						GGGCTTCTGCTGAGGGGGCAG	0.478000													21	71					0	0	0	0
CTTN	2017	broad.mit.edu	37	11	70263146	70263146	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:70263146A>G	uc001opv.3	+	8	691	c.485A>G	c.(484-486)TAT>TGT	p.Y162C	CTTN_uc001opu.2_Missense_Mutation_p.Y162C|CTTN_uc001opw.3_Missense_Mutation_p.Y162C	NM_005231	NP_005222	Q14247	SRC8_HUMAN	cortactin isoform a	162	Cortactin 3.					cell cortex|cytoskeleton|lamellipodium|ruffle|soluble fraction	protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(2;4.34e-41)|LUSC - Lung squamous cell carcinoma(11;1.51e-13)|STAD - Stomach adenocarcinoma(18;0.0513)	Lung(977;0.0234)|LUSC - Lung squamous cell carcinoma(976;0.133)		GGCGGCAAGTATGGCGTGCAG	0.582000													26	93					0	0	0	0
CLPB	81570	broad.mit.edu	37	11	72013356	72013356	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:72013356G>A	uc001osj.2	-	11	1299	c.1249C>T	c.(1249-1251)CGA>TGA	p.R417*	CLPB_uc010rqx.1_Nonsense_Mutation_p.R372*|CLPB_uc010rqy.1_Nonsense_Mutation_p.R358*|CLPB_uc001osk.2_Nonsense_Mutation_p.R387*|CLPB_uc009ytg.2_RNA|CLPB_uc010rqz.1_Nonsense_Mutation_p.R216*|CLPB_uc001osi.2_Nonsense_Mutation_p.R25*	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	417					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						ACCTCGTGTCGCTCCTGGAAC	0.522000													9	56					0	0	0	0
C2CD3	26005	broad.mit.edu	37	11	73803532	73803532	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:73803532C>T	uc001ouu.2	-	19	3673	c.3446G>A	c.(3445-3447)GGA>GAA	p.G1149E		NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1149						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					GGTCTGTATTCCCACATCCTC	0.423000													9	49					0	0	0	0
PRKRIR	5612	broad.mit.edu	37	11	76063019	76063019	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:76063019T>A	uc001oxh.1	-	5	1175	c.1175A>T	c.(1174-1176)CAT>CTT	p.H392L	PRKRIR_uc010rrz.1_Missense_Mutation_p.H217L	NM_004705	NP_004696	O43422	P52K_HUMAN	protein-kinase, interferon-inducible double	392					negative regulation of cell proliferation|response to stress|signal transduction		DNA binding|metal ion binding|protein dimerization activity			ovary(2)|pancreas(1)	3						TGGTGATCGATGGAAAAAAGA	0.378000													10	36					0	0	0	0
DLG2	1740	broad.mit.edu	37	11	83874509	83874509	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:83874509C>T	uc001paj.2	-	4	607	c.304G>A	c.(304-306)GAG>AAG	p.E102K	DLG2_uc001pai.2_Missense_Mutation_p.E51K|DLG2_uc010rsy.1_Missense_Mutation_p.E69K|DLG2_uc010rsz.1_Missense_Mutation_p.E102K|DLG2_uc010rta.1_Missense_Mutation_p.E102K|DLG2_uc001pak.2_Missense_Mutation_p.E207K|DLG2_uc010rtb.1_Missense_Mutation_p.E69K|DLG2_uc001pal.1_Missense_Mutation_p.E102K|DLG2_uc001pam.1_Missense_Mutation_p.E141K	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	102	PDZ 1.					cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				CTTACCCTCTCCAGTGTAATT	0.308000													7	26					0	0	0	0
CHORDC1	26973	broad.mit.edu	37	11	89944413	89944413	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:89944413G>C	uc001pdg.2	-	5	813	c.403C>G	c.(403-405)CTG>GTG	p.L135V	CHORDC1_uc009yvz.2_Missense_Mutation_p.L116V	NM_012124	NP_036256	Q9UHD1	CHRD1_HUMAN	cysteine and histidine-rich domain-containing	135	Interaction with HSP90AA1 and HSP90AB1 (By similarity).				chaperone-mediated protein folding|regulation of response to stress|response to stress		Hsp90 protein binding|identical protein binding				0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.00915)				CCTGATGACAGTTTAAGTTTA	0.303000													18	65					0	0	0	0
MLL	4297	broad.mit.edu	37	11	118375349	118375349	+	Silent	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:118375349C>A	uc001pta.2	+	27	8756	c.8733C>A	c.(8731-8733)GTC>GTA	p.V2911V	MLL_uc001ptb.2_Silent_p.V2914V	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2911					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		ATAGTAGTGTCTCTTCCTCTA	0.478000			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								39	117					2.54651e-27	2.90326e-27	1	0
TECTA	7007	broad.mit.edu	37	11	120998603	120998603	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:120998603C>T	uc010rzo.1	+	8	1917	c.1917C>T	c.(1915-1917)CTC>CTT	p.L639L		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	639	TIL 1.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GCTTCGTCCTCAGCACCAGCC	0.657000													22	69					0	0	0	0
SORL1	6653	broad.mit.edu	37	11	121348887	121348887	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:121348887G>A	uc001pxx.2	+	3	543	c.463G>A	c.(463-465)GGC>AGC	p.G155S		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	155	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GTTAAACTTTGGCTTGGGAAA	0.453000													13	41					0	0	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46320591	46320591	+	Missense_Mutation	SNP	G	A	A	rs112858085		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr12:46320591G>A	uc001rox.2	-	11	3180	c.2893C>T	c.(2893-2895)CGG>TGG	p.R965W	SFRS2IP_uc001row.2_Missense_Mutation_p.R650W|SFRS2IP_uc001roy.1_Missense_Mutation_p.R1039W	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	965	Arg-rich.				spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		CCCTTCCACCGGGGAGAGTAA	0.428000													41	138					0	0	0	0
ACVR1B	91	broad.mit.edu	37	12	52380658	52380658	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr12:52380658T>G	uc001rzn.2	+	7	1235	c.1193T>G	c.(1192-1194)TTT>TGT	p.F398C	ACVR1B_uc001rzl.2_Missense_Mutation_p.F398C|ACVR1B_uc001rzm.2_Missense_Mutation_p.F398C|ACVR1B_uc010snn.1_Missense_Mutation_p.F439C	NM_004302	NP_004293	P36896	ACV1B_HUMAN	activin A receptor, type IB isoform a precursor	398	Protein kinase.|Cytoplasmic (Potential).				G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|peptidyl-threonine phosphorylation|positive regulation of activin receptor signaling pathway|positive regulation of erythrocyte differentiation|protein autophosphorylation|transmembrane receptor protein serine/threonine kinase signaling pathway	cell surface	activin receptor activity, type I|ATP binding|metal ion binding|SMAD binding|transforming growth factor beta receptor activity|ubiquitin protein ligase binding			pancreas(4)|breast(2)|ovary(1)|lung(1)|kidney(1)	9				BRCA - Breast invasive adenocarcinoma(357;0.104)	Adenosine triphosphate(DB00171)	TTTGACTCCTTTAAATGTGCT	0.408000													33	84					0	0	0	0
AMHR2	269	broad.mit.edu	37	12	53823690	53823690	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr12:53823690C>T	uc001scx.1	+	9	1294	c.1216C>T	c.(1216-1218)CGA>TGA	p.R406*	AMHR2_uc009zmy.1_Nonsense_Mutation_p.R406*	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	406	Cytoplasmic (Potential).|Protein kinase.		R -> Q (in PMDS2).		Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	CATGGCCCTCCGACGAGCTGA	0.582000									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				16	47					0	0	0	0
IRAK3	11213	broad.mit.edu	37	12	66639014	66639014	+	Missense_Mutation	SNP	G	A	A	rs140671957		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr12:66639014G>A	uc001sth.2	+	11	1388	c.1286G>A	c.(1285-1287)CGG>CAG	p.R429Q	IRAK3_uc010ssy.1_Missense_Mutation_p.R368Q	NM_007199	NP_009130	Q9Y616	IRAK3_HUMAN	interleukin-1 receptor-associated kinase 3	429	Protein kinase.		R -> Q (may be associated with ASRT5).		interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|negative regulation of innate immune response|negative regulation of interleukin-12 production|negative regulation of interleukin-6 production|negative regulation of macrophage cytokine production|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein catabolic process|negative regulation of protein complex disassembly|negative regulation of toll-like receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of macrophage tolerance induction|positive regulation of NF-kappaB transcription factor activity|response to exogenous dsRNA|response to lipopolysaccharide|response to peptidoglycan	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein heterodimerization activity|protein homodimerization activity|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(2)|central_nervous_system(1)	8				GBM - Glioblastoma multiforme(28;0.0203)		GCTGCAACGCGGGCAAAGTTA	0.438000													31	87					0	0	0	0
C12orf74	338809	broad.mit.edu	37	12	93100819	93100819	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr12:93100819C>T	uc001tch.1	+	2	642	c.412C>T	c.(412-414)CAG>TAG	p.Q138*	C12orf74_uc001tci.2_Nonsense_Mutation_p.Q138*	NM_001037671	NP_001032760	Q32Q52	CL074_HUMAN	hypothetical protein LOC338809	138											0						TCCTGAGCTTCAGCCTGTCAA	0.582000													12	50					0	0	0	0
KNTC1	9735	broad.mit.edu	37	12	123078827	123078827	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr12:123078827C>G	uc001ucv.2	+	43	4413	c.4250C>G	c.(4249-4251)TCT>TGT	p.S1417C	KNTC1_uc010taf.1_Intron	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	1417					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		TTCTAGATTTCTTTTCAACCA	0.343000													21	54					0	0	0	0
VPS37B	79720	broad.mit.edu	37	12	123355461	123355461	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr12:123355461A>C	uc001udl.2	-	2	362	c.259T>G	c.(259-261)TAT>GAT	p.Y87D		NM_024667	NP_078943	Q9H9H4	VP37B_HUMAN	vacuolar protein sorting 37B	87	VPS37 C-terminal.|Interaction with IST1.				cellular membrane organization|endosome transport|protein transport	late endosome membrane					0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.08e-05)|Epithelial(86;0.000197)|BRCA - Breast invasive adenocarcinoma(302;0.205)		TTTATCTGATAGGCTTCAAAG	0.448000													24	79					0	0	0	0
RIMBP2	23504	broad.mit.edu	37	12	130921797	130921797	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr12:130921797C>T	uc001uil.2	-	10	1809	c.1645G>A	c.(1645-1647)GTG>ATG	p.V549M	RIMBP2_uc001uim.2_Missense_Mutation_p.V457M|RIMBP2_uc001uin.1_Missense_Mutation_p.V208M	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	549	Fibronectin type-III 3.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		ACAAGCTCCACGGCCGTGCTG	0.692000													5	4					0	0	0	0
RIMBP2	23504	broad.mit.edu	37	12	130934748	130934748	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr12:130934748T>C	uc001uil.2	-	6	691	c.527A>G	c.(526-528)TAT>TGT	p.Y176C	RIMBP2_uc001uim.2_Missense_Mutation_p.Y84C	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	176	SH3 1.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CACTTACCTATAGCGGGCAAC	0.562000													4	7					0	0	0	0
DGKH	160851	broad.mit.edu	37	13	42783488	42783488	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr13:42783488A>G	uc001uyl.1	+	23	2758	c.2737A>G	c.(2737-2739)ATA>GTA	p.I913V	DGKH_uc010tfh.1_Missense_Mutation_p.I913V|DGKH_uc001uym.1_Missense_Mutation_p.I913V|DGKH_uc010tfi.1_Missense_Mutation_p.I668V|DGKH_uc010tfj.1_Missense_Mutation_p.I768V|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Missense_Mutation_p.I768V|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	913					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		GAAAATCACTATATTTGGTGA	0.393000													10	38					0	0	0	0
SLITRK6	84189	broad.mit.edu	37	13	86370532	86370532	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr13:86370532C>T	uc001vll.1	-	2	571	c.112G>A	c.(112-114)GAG>AAG	p.E38K	SLITRK6_uc010afe.1_5'Flank	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	38	LRRNT 1.|Extracellular (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		TCTTTTTCCTCACAATTGCAA	0.398000													4	51					0	0	0	0
MYO16	23026	broad.mit.edu	37	13	109699324	109699324	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr13:109699324C>G	uc001vqt.1	+	24	2917	c.2791C>G	c.(2791-2793)CTA>GTA	p.L931V	MYO16_uc010agk.1_Missense_Mutation_p.L953V|MYO16_uc001vqu.1_Missense_Mutation_p.L731V|MYO16_uc010tjh.1_Missense_Mutation_p.L443V	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	931	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			ACAGAATCTTCTATTTGTAAT	0.313000													14	46					0	0	0	0
PTPN21	11099	broad.mit.edu	37	14	88945670	88945670	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr14:88945670G>C	uc001xwv.3	-	13	2436	c.2105C>G	c.(2104-2106)TCG>TGG	p.S702W	PTPN21_uc010twc.1_Missense_Mutation_p.S498W	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	702						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						GGTGGCGTCCGACAGGGACTT	0.672000													15	49					0	0	0	0
GPR68	8111	broad.mit.edu	37	14	91700861	91700861	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr14:91700861G>C	uc001xzg.2	-	2	875	c.534C>G	c.(532-534)ATC>ATG	p.I178M	GPR68_uc001xzh.2_Missense_Mutation_p.I188M	NM_003485	NP_003476	Q15743	OGR1_HUMAN	G protein-coupled receptor 68	178	Extracellular (Potential).				inflammatory response	integral to plasma membrane	G-protein coupled receptor activity			kidney(1)	1		all_cancers(154;0.0555)		COAD - Colon adenocarcinoma(157;0.21)		GCCATGCCTGGATGGGGTAGT	0.622000													3	18					0	0	0	0
CASC5	57082	broad.mit.edu	37	15	40951562	40951562	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr15:40951562G>A	uc010bbs.1	+	26	6978	c.6817G>A	c.(6817-6819)GCA>ACA	p.A2273T	CASC5_uc010bbt.1_Missense_Mutation_p.A2247T	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	2273	Necessary for kinetochore localization and for interaction with NSL1 and DSN1.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		CTCTAGCTCCGCAGCATTTGC	0.328000													20	39					0	0	0	0
USP8	9101	broad.mit.edu	37	15	50769638	50769638	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr15:50769638C>G	uc001zym.3	+	11	1660	c.1160C>G	c.(1159-1161)TCT>TGT	p.S387C	USP8_uc001zyk.1_Missense_Mutation_p.S88C|USP8_uc001zyl.3_Missense_Mutation_p.S387C|USP8_uc001zyn.3_Missense_Mutation_p.S387C|USP8_uc010ufh.1_Missense_Mutation_p.S310C|USP8_uc010bev.1_Missense_Mutation_p.S16C	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	387					cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		GTTGCTGCTTCTAAATCTGAT	0.343000													23	43					0	0	0	0
SV2B	9899	broad.mit.edu	37	15	91835756	91835756	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr15:91835756G>C	uc002bqv.2	+	12	2417	c.2026G>C	c.(2026-2028)GAG>CAG	p.E676Q	SV2B_uc010uqv.1_Missense_Mutation_p.E525Q|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	676	Cytoplasmic (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity	p.E676Q(1)		ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			TCGACTGCCAGAGACTCGAGA	0.507000													31	82					0	0	0	0
LYSMD4	145748	broad.mit.edu	37	15	100269526	100269526	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr15:100269526G>A	uc002bvk.2	-	3	756	c.693C>T	c.(691-693)GTC>GTT	p.V231V	LYSMD4_uc002bvj.1_Intron|LYSMD4_uc010bou.1_Intron|LYSMD4_uc002bvl.2_Silent_p.V232V|LYSMD4_uc002bvm.2_3'UTR|LYSMD4_uc010bov.2_Silent_p.V231V			Q5XG99	LYSM4_HUMAN	SubName: Full=cDNA FLJ77040, highly similar to Homo sapiens LysM, putative peptidoglycan-binding, domain containing 4, mRNA; SubName: Full=LysM, putative peptidoglycan-binding, domain containing 4, isoform CRA_c;	231	Helical; (Potential).				cell wall macromolecule catabolic process	integral to membrane					0	Lung NSC(78;0.00335)|all_lung(78;0.00659)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00162)|LUSC - Lung squamous cell carcinoma(107;0.17)|Lung(145;0.208)			AGACAGGCAAGACAATACCAA	0.478000													44	142					0	0	0	0
UBE2MP1	606551	broad.mit.edu	37	16	34404616	34404616	+	RNA	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr16:34404616T>C	uc002edv.1	-	1		c.147A>G				NR_002837				full-length cDNA clone CS0DH003YB23 of T cells (Jurkat cell line) of Homo sapiens (human).												0						TTGATCATCCTACCGCTgccg	0.488000													5	18					0	0	0	0
TMCO7	79613	broad.mit.edu	37	16	68893913	68893913	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr16:68893913G>C	uc002ewi.3	+	2	233	c.221G>C	c.(220-222)AGA>ACA	p.R74T	TMCO7_uc002ewh.2_Missense_Mutation_p.R74T	NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	74						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		AAACTCCTAAGAGATGAAATT	0.403000													6	51					0	0	0	0
ZFP1	162239	broad.mit.edu	37	16	75204123	75204123	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr16:75204123G>A	uc002fdo.2	+	4	1279	c.1115G>A	c.(1114-1116)CGA>CAA	p.R372Q	ZFP1_uc002fdp.2_Missense_Mutation_p.R317Q|ZFP1_uc010cgt.2_Missense_Mutation_p.R339Q|ZFP1_uc010cgs.2_Missense_Mutation_p.R317Q|ZFP1_uc002fdq.2_Missense_Mutation_p.R372Q	NM_153688	NP_710155	Q6P2D0	ZFP1_HUMAN	zinc finger protein 1 homolog	372	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.R372Q(1)		upper_aerodigestive_tract(1)|ovary(1)	2						TTACACTTGCGAATCCACACA	0.473000													7	55					0	0	0	0
CHST6	4166	broad.mit.edu	37	16	75513142	75513142	+	Silent	SNP	T	C	C	rs138994371		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr16:75513142T>C	uc002fef.2	-	3	765	c.585A>G	c.(583-585)CTA>CTG	p.L195L	CHST6_uc002feg.1_RNA|CHST6_uc002feh.1_Silent_p.L195L	NM_021615	NP_067628	Q9GZX3	CHST6_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	195	Lumenal (Potential).				keratan sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						GCACGATGCGTAGGTTGAGCG	0.687000													11	44					0	0	0	0
MBTPS1	8720	broad.mit.edu	37	16	84104310	84104310	+	Silent	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr16:84104310T>C	uc002fhi.2	-	13	2167	c.1665A>G	c.(1663-1665)TTA>TTG	p.L555L	MBTPS1_uc002fhh.2_Silent_p.L59L	NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1	555	Lumenal (Potential).				cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						ACCAAGGCCATAAGACCGAGG	0.522000													16	73					0	0	0	0
ZFP3	124961	broad.mit.edu	37	17	4994843	4994843	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr17:4994843C>T	uc002gaq.2	+	2	169	c.44C>T	c.(43-45)TCT>TTT	p.S15F		NM_153018	NP_694563	Q96NJ6	ZFP3_HUMAN	zinc finger protein-3	15					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAAGAAATTTCTGAAGAATCT	0.403000													16	15					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7577114	7577114	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr17:7577114C>A	uc002gim.2	-	8	1018	c.824G>T	c.(823-825)TGT>TTT	p.C275F	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.C275F|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.C143F|TP53_uc010cng.1_Missense_Mutation_p.C143F|TP53_uc002gii.1_Missense_Mutation_p.C143F|TP53_uc010cnh.1_Missense_Mutation_p.C275F|TP53_uc010cni.1_Missense_Mutation_p.C275F|TP53_uc002gij.2_Missense_Mutation_p.C275F	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	275	Interaction with DNA.||Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		C -> S (in sporadic cancers; somatic mutation).|C -> G (in sporadic cancers; somatic mutation).|C -> F (in sporadic cancers; somatic mutation).|C -> W (in sporadic cancers; somatic mutation).|C -> Y (in LFS; germline mutation and in sporadic cancers; somatic mutation).|C -> R (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.C275Y(44)|p.C275F(34)|p.C275G(7)|p.C275W(7)|p.0?(7)|p.C275R(6)|p.C275C(4)|p.C275fs*70(2)|p.C275fs*31(2)|p.?(2)|p.C275S(2)|p.R273_C275delRVC(1)|p.C275_A276ins10(1)|p.V274_P278del(1)|p.C275*(1)|p.F270_D281del12(1)|p.C275_R283delCACPGRDRR(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.C275fs*67(1)|p.V272_K292del21(1)|p.C275fs*20(1)|p.A276fs*29(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AGGACAGGCACAAACACGCAC	0.552000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			16	18					1.52009e-12	1.69218e-12	1	0
ZNF286A	57335	broad.mit.edu	37	17	15619477	15619477	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr17:15619477G>T	uc010cot.2	+	6	835	c.439G>T	c.(439-441)GTC>TTC	p.V147F	ZNF286A_uc002goz.3_Missense_Mutation_p.V35F|ZNF286A_uc010vwa.1_Missense_Mutation_p.V147F|ZNF286A_uc002gpa.2_Missense_Mutation_p.V147F	NM_001130842	NP_001124314	Q9HBT8	Z286A_HUMAN	zinc finger protein 286	147					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)|READ - Rectum adenocarcinoma(1115;0.0222)|BRCA - Breast invasive adenocarcinoma(8;0.0781)		ACGGAATAGTGTCTATGACTC	0.403000													19	20					3.62473e-10	3.99737e-10	1	0
WIPF2	147179	broad.mit.edu	37	17	38433351	38433351	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr17:38433351G>C	uc002hug.1	+	7	1437	c.1197G>C	c.(1195-1197)AAG>AAC	p.K399N	WIPF2_uc002huh.1_Missense_Mutation_p.K249N|WIPF2_uc010cww.1_Missense_Mutation_p.K249N|WIPF2_uc002hui.1_Missense_Mutation_p.K399N|WIPF2_uc010cwx.1_Missense_Mutation_p.K141N|WIPF2_uc010cwy.1_Missense_Mutation_p.K399N	NM_133264	NP_573571	Q8TF74	WIPF2_HUMAN	WIRE protein	399						cytoplasm|cytoskeleton	actin binding	p.K399N(1)		upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						TTGAGTCAAAGTATTCCTTCC	0.413000										HNSCC(43;0.11)			20	78					0	0	0	0
GFAP	2670	broad.mit.edu	37	17	42992693	42992693	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr17:42992693C>T	uc002ihq.2	-	1	222	c.162G>A	c.(160-162)CTG>CTA	p.L54L	GFAP_uc002ihr.2_Silent_p.L54L|GFAP_uc010wjg.1_RNA	NM_002055	NP_002046	P14136	GFAP_HUMAN	glial fibrillary acidic protein isoform 1	54	Head.					cytoplasm|intermediate filament	structural constituent of cytoskeleton			ovary(1)|pancreas(1)	2		Prostate(33;0.0959)				GTGCCCCAGCCAGGGAGAAAT	0.657000													18	40					0	0	0	0
TTLL6	284076	broad.mit.edu	37	17	46862375	46862375	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr17:46862375G>A	uc010wlo.1	-	14	1985	c.1950C>T	c.(1948-1950)CTC>CTT	p.L650L	TTLL6_uc002iob.2_Silent_p.L343L|TTLL6_uc010dbi.2_RNA|TTLL6_uc002ioc.2_Silent_p.L403L|TTLL6_uc002iod.2_Silent_p.L497L	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	602						cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						TCGAGCTGCTGAGATTGATAT	0.483000													72	121					0	0	0	0
BAHCC1	57597	broad.mit.edu	37	17	79410170	79410170	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr17:79410170G>A	uc002kaf.2	+	3	1795	c.1795G>A	c.(1795-1797)GAG>AAG	p.E599K	BAHCC1_uc002kae.2_5'Flank	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	599							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			CATCAGCGAGGAGCGCAAGGC	0.706000													11	30					0	0	0	0
EPB41L3	23136	broad.mit.edu	37	18	5397422	5397422	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr18:5397422T>C	uc002kmt.1	-	18	2562	c.2476A>G	c.(2476-2478)ATG>GTG	p.M826V	EPB41L3_uc010wzh.1_Missense_Mutation_p.M657V|EPB41L3_uc002kmu.1_Missense_Mutation_p.M604V|EPB41L3_uc010dkq.1_Missense_Mutation_p.M495V|EPB41L3_uc002kms.1_Missense_Mutation_p.M61V|EPB41L3_uc010wze.1_Missense_Mutation_p.M131V|EPB41L3_uc010wzf.1_Missense_Mutation_p.M123V|EPB41L3_uc010wzg.1_Missense_Mutation_p.M98V|EPB41L3_uc010dkr.2_Missense_Mutation_p.M218V	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	826	Spectrin--actin-binding (Potential).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						TTGGTTTCCATTTTCTGCATG	0.517000													32	82					0	0	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14780007	14780007	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr18:14780007C>G	uc010dlo.2	+	11	1649	c.1469C>G	c.(1468-1470)TCT>TGT	p.S490C	ANKRD30B_uc010xak.1_RNA	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	490										ovary(1)|skin(1)	2						GAAGAATATTCTTGGGATTCT	0.313000													5	11					0	0	0	0
DSG3	1830	broad.mit.edu	37	18	29055986	29055986	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr18:29055986C>T	uc002kws.2	+	16	2872	c.2763C>T	c.(2761-2763)TCC>TCT	p.S921S	DSG3_uc002kwt.2_Silent_p.S203S	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	921	Desmoglein repeat 1.|Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CAGCTGTTTCCATCCCTGACC	0.507000													22	70					0	0	0	0
NETO1	81832	broad.mit.edu	37	18	70461478	70461478	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr18:70461478C>T	uc002lkw.2	-	6	797	c.513G>A	c.(511-513)GCG>GCA	p.A171A	NETO1_uc002lkx.1_Silent_p.A170A|NETO1_uc002lky.1_Silent_p.A171A	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	171	Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		CAAACTCACACGCTAAATAAC	0.388000													19	61					0	0	0	0
SFRS14	10147	broad.mit.edu	37	19	19112448	19112448	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr19:19112448G>A	uc002nkx.2	-	8	3111	c.2965C>T	c.(2965-2967)CGG>TGG	p.R989W	SFRS14_uc002nkz.1_Missense_Mutation_p.R1003W|SFRS14_uc002nla.1_Missense_Mutation_p.R989W|SFRS14_uc002nlb.2_Missense_Mutation_p.R989W|SFRS14_uc010xqk.1_Missense_Mutation_p.R758W	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	989					mRNA processing|RNA splicing	nucleus	RNA binding	p.R989W(1)			0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			GGACGACCCCGAGGCCTGTCA	0.423000													11	62					0	0	0	0
ZNF345	25850	broad.mit.edu	37	19	37368294	37368294	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr19:37368294G>A	uc002oex.2	+	3	940	c.562G>A	c.(562-564)GCC>ACC	p.A188T	ZNF345_uc002oey.3_Missense_Mutation_p.A188T|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	188	C2H2-type 5.				negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TTTTGAATCAGCCCTTATTCG	0.413000													22	41					0	0	0	0
HNRNPL	3191	broad.mit.edu	37	19	39336360	39336360	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr19:39336360T>C	uc010xul.1	-	4	651	c.640A>G	c.(640-642)ATC>GTC	p.I214V	HNRNPL_uc010xum.1_Missense_Mutation_p.I81V|HNRNPL_uc010xun.1_5'Flank	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	214	RRM 2.				nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			GGATTACAGATAGTGTAAAGA	0.478000													13	44					0	0	0	0
ZNF222	7673	broad.mit.edu	37	19	44536636	44536636	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr19:44536636C>A	uc002oyc.2	+	4	992	c.809C>A	c.(808-810)TCA>TAA	p.S270*	ZNF284_uc010ejd.2_Intron|ZNF222_uc002oye.2_Nonsense_Mutation_p.S310*|ZNF222_uc002oyd.2_Nonsense_Mutation_p.S216*	NM_013360	NP_037492	Q9UK12	ZN222_HUMAN	zinc finger protein 222 isoform 2	270	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Prostate(69;0.0435)				TGTCTTAGGTCAAGTCTTAAT	0.393000													34	97					9.04072e-19	1.016e-18	1	0
HIF3A	64344	broad.mit.edu	37	19	46828852	46828852	+	Missense_Mutation	SNP	G	A	A	rs139513428		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr19:46828852G>A	uc002peh.2	+	11	1425	c.1396G>A	c.(1396-1398)GGG>AGG	p.G466R	HIF3A_uc002peg.3_Missense_Mutation_p.G466R|HIF3A_uc010xxx.1_RNA|HIF3A_uc002pei.3_Missense_Mutation_p.G410R|HIF3A_uc002pej.1_Missense_Mutation_p.G397R|HIF3A_uc002pek.2_Missense_Mutation_p.G410R|HIF3A_uc010xxy.1_Missense_Mutation_p.G397R|HIF3A_uc002pel.2_Missense_Mutation_p.G464R|HIF3A_uc010xxz.1_Missense_Mutation_p.G415R	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	466	NTAD.|ODD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity	p.G464R(1)		upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		CTTCACCTCCGGGAAAGACAC	0.507000													45	129					0	0	0	0
EMP3	2014	broad.mit.edu	37	19	48830823	48830823	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr19:48830823G>A	uc002piv.2	+	3	378	c.124G>A	c.(124-126)GAC>AAC	p.D42N		NM_001425	NP_001416	P54852	EMP3_HUMAN	epithelial membrane protein 3	42					cell growth|negative regulation of cell proliferation	integral to membrane					0		all_epithelial(76;6.08e-07)|all_lung(116;5.76e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.00989)|Prostate(7;0.0143)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000138)|all cancers(93;0.00017)|Epithelial(262;0.0138)|GBM - Glioblastoma multiforme(486;0.0146)		TCTCTGGTACGACTGCACGTG	0.562000													7	32					0	0	0	0
SLC6A16	28968	broad.mit.edu	37	19	49813315	49813315	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr19:49813315T>A	uc002pmz.2	-	4	916	c.682A>T	c.(682-684)ATG>TTG	p.M228L	SLC6A16_uc002pna.2_Missense_Mutation_p.M228L|hsa-mir-4324|MI0015854_5'Flank	NM_014037	NP_054756	Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	228	Extracellular (Potential).					integral to membrane|intracellular	neurotransmitter:sodium symporter activity			skin(2)|ovary(1)|kidney(1)	4		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)		CTAGAGTTCATCGTTAAGGGA	0.289000													28	61					0	0	0	0
ZNF616	90317	broad.mit.edu	37	19	52619980	52619980	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr19:52619980G>T	uc002pym.2	-	4	720	c.437C>A	c.(436-438)TCA>TAA	p.S146*	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	146					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		AGCCAGACGTGACTCAAAGTT	0.383000													35	122					9.04072e-19	1.016e-18	1	0
NLRP4	147945	broad.mit.edu	37	19	56388492	56388492	+	Missense_Mutation	SNP	C	T	T	rs147716168		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr19:56388492C>T	uc002qmd.3	+	8	3078	c.2656C>T	c.(2656-2658)CGG>TGG	p.R886W	NLRP4_uc002qmf.2_Missense_Mutation_p.R811W|NLRP4_uc010etf.2_Missense_Mutation_p.R661W	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	886	LRR 6.						ATP binding	p.R886W(1)		ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GCTGTTGTGTCGGGCTCTGAC	0.498000													38	108					0	0	0	0
PEG3	5178	broad.mit.edu	37	19	57325894	57325894	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr19:57325894T>G	uc002qnu.2	-	7	4267	c.3916A>C	c.(3916-3918)AAT>CAT	p.N1306H	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.N1277H|PEG3_uc002qnv.2_Missense_Mutation_p.N1306H|PEG3_uc002qnw.2_Missense_Mutation_p.N1182H|PEG3_uc002qnx.2_Missense_Mutation_p.N1180H|PEG3_uc010etr.2_Missense_Mutation_p.N1306H	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1306					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.N1306H(2)		ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TAGGGCTCATTCTTATGAACA	0.448000													18	52					0	0	0	0
ATAD2B	54454	broad.mit.edu	37	2	23977087	23977087	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:23977087G>C	uc002rek.3	-	27	4591	c.4297C>G	c.(4297-4299)CGT>GGT	p.R1433G	ATAD2B_uc010yki.1_RNA|ATAD2B_uc002rei.3_Missense_Mutation_p.R673G|ATAD2B_uc002rej.3_Missense_Mutation_p.R601G	NM_017552	NP_060022	Q9ULI0	ATD2B_HUMAN	ATPase family, AAA domain containing 2B	1433							ATP binding|nucleoside-triphosphatase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTACGATGACGGTAGATACAC	0.318000													3	4					0	0	0	0
USP34	9736	broad.mit.edu	37	2	61415337	61415337	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:61415337A>G	uc002sbe.2	-	80	10563	c.10541T>C	c.(10540-10542)ATG>ACG	p.M3514T	USP34_uc002sbd.2_Missense_Mutation_p.M316T	NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	3514					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			ATGTTGCTGCATATGACTAAA	0.468000													16	68					0	0	0	0
ERCC3	2071	broad.mit.edu	37	2	128044295	128044295	+	Silent	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:128044295T>C	uc002toh.1	-	8	1421	c.1326A>G	c.(1324-1326)GAA>GAG	p.E442E	ERCC3_uc002toe.1_Silent_p.E197E|ERCC3_uc002tof.1_Silent_p.E378E|ERCC3_uc002tog.1_Silent_p.E378E|ERCC3_uc010flx.1_Silent_p.E197E	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	442	Helicase ATP-binding.|DEVH box.				cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		TGGTGTGCACTTCATCCAGGA	0.557000			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				23	84					0	0	0	0
LRP1B	53353	broad.mit.edu	37	2	141081531	141081531	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:141081531C>A	uc002tvj.1	-	81	13417	c.12445G>T	c.(12445-12447)GAG>TAG	p.E4149*		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4149	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding	p.E4149*(1)		lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GCTAAGTACTCTACTGAACCA	0.289000										TSP Lung(27;0.18)			21	55					7.45023e-12	8.25471e-12	1	0
LRP1B	53353	broad.mit.edu	37	2	141625820	141625821	+	Missense_Mutation	DNP	CC	GG	GG			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:141625820_141625821CC>GG	uc002tvj.1	-	26	5153_5154	c.4181_4182GG>CC	c.(4180-4182)TGG>TCC	p.W1394S	LRP1B_uc010fnl.1_Missense_Mutation_p.W576S	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1394	Extracellular (Potential).|LDL-receptor class B 11.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCCAGTCTGTCCAGAAAAGAAT	0.267000										TSP Lung(27;0.18)			9	33					0	0	0	0
ZEB2	9839	broad.mit.edu	37	2	145156648	145156648	+	Silent	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:145156648A>G	uc002tvu.2	-	8	2586	c.2106T>C	c.(2104-2106)AAT>AAC	p.N702N	ZEB2_uc002tvv.2_Silent_p.N696N|ZEB2_uc010zbm.1_Silent_p.N673N|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Silent_p.N731N	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	702	Homeobox; atypical.					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		GGGACCTGGAATTTGAGTACT	0.463000													48	155					0	0	0	0
EPC2	26122	broad.mit.edu	37	2	149526743	149526743	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:149526743G>A	uc010zbt.1	+	8	1191	c.1164G>A	c.(1162-1164)CCG>CCA	p.P388P		NM_015630	NP_056445	Q52LR7	EPC2_HUMAN	enhancer of polycomb homolog 2	388					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)|breast(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0516)		TATCAGAACCGGAAGAAGAAA	0.388000													7	14					0	0	0	0
PGAP1	80055	broad.mit.edu	37	2	197738421	197738421	+	Silent	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:197738421C>G	uc002utw.2	-	15	1602	c.1488G>C	c.(1486-1488)CTG>CTC	p.L496L	PGAP1_uc002utx.2_Silent_p.L322L|PGAP1_uc002uty.1_Silent_p.L496L	NM_024989	NP_079265	Q75T13	PGAP1_HUMAN	GPI deacylase	496	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|intracellular protein transport|myo-inositol transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	nuclease activity|phosphoric ester hydrolase activity			ovary(3)|central_nervous_system(1)	4						GTCCAAAGTTCAGAAGCTCTA	0.294000													15	48					0	0	0	0
SF3B1	23451	broad.mit.edu	37	2	198285204	198285204	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:198285204C>T	uc002uue.2	-	4	411	c.363G>A	c.(361-363)AAG>AAA	p.K121K	SF3B1_uc010fsk.1_RNA|SF3B1_uc002uuf.2_Silent_p.K121K|SF3B1_uc002uug.2_Silent_p.K121K	NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	121					nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TCCGCCTATGCTTTTTGTATT	0.373000													23	49					0	0	0	0
PSMD1	5707	broad.mit.edu	37	2	231944262	231944262	+	Silent	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:231944262A>G	uc002vrn.1	+	11	1304	c.1173A>G	c.(1171-1173)GAA>GAG	p.E391E	PSMD1_uc002vrm.1_Silent_p.E391E|PSMD1_uc010fxu.1_Silent_p.E255E	NM_002807	NP_002798	Q99460	PSMD1_HUMAN	proteasome 26S non-ATPase subunit 1	391					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding			ovary(1)|skin(1)	2		Ovarian(221;0.000626)|Medulloblastoma(418;0.0109)|Renal(207;0.0112)|Lung NSC(271;0.0538)|all_lung(227;0.0713)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;4e-26)|LUSC - Lung squamous cell carcinoma(224;0.0138)|Lung(119;0.0168)	Bortezomib(DB00188)	ATAATTTGGAATGGTTAGCCA	0.313000													6	21					0	0	0	0
INPP5D	3635	broad.mit.edu	37	2	233925301	233925301	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:233925301G>A	uc010zmo.1	+	1	266	c.113G>A	c.(112-114)CGG>CAG	p.R38Q	INPP5D_uc010zmp.1_Missense_Mutation_p.R38Q	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	38	SH2.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		TCCATCTCCCGGGCATACGCG	0.617000													15	57					0	0	0	0
ASB1	51665	broad.mit.edu	37	2	239344474	239344474	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:239344474A>G	uc002vyg.2	+	3	400	c.314A>G	c.(313-315)GAT>GGT	p.D105G		NM_001040445	NP_001035535	Q9Y576	ASB1_HUMAN	ankyrin repeat and SOCS box-containing protein	105	ANK 2.				intracellular signal transduction|negative regulation of cytokine biosynthetic process						0		all_epithelial(40;2.65e-14)|Breast(86;7.61e-05)|Renal(207;0.00183)|all_lung(227;0.0283)|Ovarian(221;0.0365)|Lung NSC(271;0.0941)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;2.04e-26)|OV - Ovarian serous cystadenocarcinoma(60;4.5e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;2.88e-05)|Lung(119;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00644)		GCCGAGGTGGATCTGGTGGAC	0.627000													12	29					0	0	0	0
VPS16	64601	broad.mit.edu	37	20	2844895	2844895	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr20:2844895C>T	uc002whe.2	+	17	1730	c.1682C>T	c.(1681-1683)GCA>GTA	p.A561V	VPS16_uc002whh.2_RNA|PTPRA_uc002whj.2_5'UTR|VPS16_uc002whf.2_Missense_Mutation_p.A417V|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_Missense_Mutation_p.A247V|VPS16_uc002whi.2_Missense_Mutation_p.A45V	NM_022575	NP_072097	Q9H269	VPS16_HUMAN	vacuolar protein sorting 16 isoform 1	561					intracellular protein transport	early endosome|HOPS complex|late endosome membrane|lysosomal membrane|recycling endosome				ovary(2)|pancreas(1)|skin(1)	4						AGCAAACTGGCACTAAGCAAG	0.602000													14	41					0	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29625877	29625877	+	Missense_Mutation	SNP	G	A	A	rs7266938	by1000genomes	TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr20:29625877G>A	uc010ztl.1	+	2	63	c.31G>A	c.(31-33)GCC>ACC	p.A11T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTACAGAATCGCCCTGAAATC	0.353000													4	64					0	0	0	0
CABIN1	23523	broad.mit.edu	37	22	24432587	24432587	+	Silent	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr22:24432587A>G	uc002zzi.1	+	3	181	c.54A>G	c.(52-54)GAA>GAG	p.E18E	CABIN1_uc002zzj.1_Silent_p.E18E|CABIN1_uc002zzl.1_Silent_p.E18E|CABIN1_uc010guk.1_Silent_p.E18E|CABIN1_uc002zzk.1_Silent_p.E18E	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	18					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						ATGATCATGAAGGAAGCTTTA	0.453000													76	174					0	0	0	0
DNAJB7	150353	broad.mit.edu	37	22	41257490	41257490	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr22:41257490G>C	uc003azj.2	-	1	641	c.509C>G	c.(508-510)TCT>TGT	p.S170C	XPNPEP3_uc011aox.1_Intron|XPNPEP3_uc003azh.2_Intron|XPNPEP3_uc003azi.2_Intron|XPNPEP3_uc011aoy.1_5'Flank|XPNPEP3_uc003azg.1_Intron|XPNPEP3_uc003azf.1_Intron|XPNPEP3_uc010gyh.1_5'Flank	NM_145174	NP_660157	Q7Z6W7	DNJB7_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 7	170					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)	1						GGAAGAGAAAGAAGTAAGGCC	0.353000													14	58					0	0	0	0
KIAA1644	85352	broad.mit.edu	37	22	44681438	44681438	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr22:44681438G>A	uc003bet.2	-	4	602	c.469C>T	c.(469-471)CGG>TGG	p.R157W		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	157	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				TGACCCGGCCGAGGGGCCCGA	0.697000													21	67					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46658432	46658432	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr22:46658432G>A	uc003bhh.2	-	1	788	c.788C>T	c.(787-789)TCC>TTC	p.S263F		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	263	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GGCGGGCACGGAGAACACCTG	0.667000													9	63					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46658434	46658434	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr22:46658434G>A	uc003bhh.2	-	1	786	c.786C>T	c.(784-786)TTC>TTT	p.F262F		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	262	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		CGGGCACGGAGAACACCTGCC	0.677000													9	60					0	0	0	0
KIF9	64147	broad.mit.edu	37	3	47284589	47284589	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr3:47284589A>G	uc010hjp.2	-	17	2265	c.1661T>C	c.(1660-1662)ATT>ACT	p.I554T	KIF9_uc003cqx.2_Missense_Mutation_p.I554T|KIF9_uc003cqy.2_Intron|KIF9_uc011bat.1_Intron|uc003cqw.1_RNA	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	554					blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		AAGGGGCTCAATGCTGGAAGT	0.498000													16	41					0	0	0	0
P4HTM	54681	broad.mit.edu	37	3	49042401	49042401	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr3:49042401G>A	uc003cvg.2	+	6	1344	c.995G>A	c.(994-996)GGG>GAG	p.G332E	P4HTM_uc003cvh.2_Missense_Mutation_p.G332E|WDR6_uc011bbx.1_5'Flank|WDR6_uc003cvj.2_5'Flank|WDR6_uc011bby.1_5'Flank|WDR6_uc010hkn.2_5'Flank|WDR6_uc011bbz.1_5'Flank	NM_177939	NP_808808	Q9NXG6	P4HTM_HUMAN	hypoxia-inducible factor prolyl 4-hydroxylase	332	Lumenal (Potential).|Fe2OG dioxygenase.					endoplasmic reticulum membrane|integral to membrane	calcium ion binding|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			skin(1)|pancreas(1)	2					Vitamin C(DB00126)	GTGGACAGTGGGCCTGTGTAC	0.617000													26	48					0	0	0	0
USP19	10869	broad.mit.edu	37	3	49155121	49155121	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr3:49155121G>C	uc003cwd.1	-	4	602	c.441C>G	c.(439-441)TTC>TTG	p.F147L	USP19_uc003cwa.2_5'UTR|USP19_uc003cvz.3_Missense_Mutation_p.F147L|USP19_uc011bcg.1_Missense_Mutation_p.F147L|USP19_uc003cwb.2_Missense_Mutation_p.F132L|USP19_uc003cwc.1_5'Flank|USP19_uc011bch.1_Missense_Mutation_p.F147L|USP19_uc011bci.1_Missense_Mutation_p.F132L	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	147	Cytoplasmic (Potential).|CS 1.				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		ctgtatctgtgaaagcagcat	0.408000													14	38					0	0	0	0
PHLDB2	90102	broad.mit.edu	37	3	111688671	111688671	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr3:111688671C>T	uc010hqa.2	+	16	3861	c.3450C>T	c.(3448-3450)CTC>CTT	p.L1150L	PHLDB2_uc003dyc.2_Silent_p.L1134L|PHLDB2_uc003dyd.2_Silent_p.L1107L|PHLDB2_uc003dyg.2_Silent_p.L1150L|PHLDB2_uc003dyh.2_Silent_p.L1107L|PHLDB2_uc003dyi.2_Silent_p.L641L|PHLDB2_uc003dyj.2_Silent_p.L205L	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	1150	PH.					cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						GAGGATTCCTCATCAAAATGG	0.418000													18	78					0	0	0	0
KALRN	8997	broad.mit.edu	37	3	124175521	124175521	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr3:124175521G>T	uc003ehg.2	+	23	3921	c.3794G>T	c.(3793-3795)CGG>CTG	p.R1265L	KALRN_uc010hrv.1_Missense_Mutation_p.R1256L|KALRN_uc003ehf.1_Missense_Mutation_p.R1265L|KALRN_uc011bjy.1_Missense_Mutation_p.R1256L|KALRN_uc003ehh.1_Missense_Mutation_p.R611L	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1265					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GTCAAGCTGCGGGACGCCAAC	0.547000													4	74					0.00909568	0.00958295	1	0
ZBTB38	253461	broad.mit.edu	37	3	141162473	141162473	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr3:141162473A>G	uc003etw.2	+	8	2225	c.1243A>G	c.(1243-1245)ATT>GTT	p.I415V	ZBTB38_uc010hun.2_Missense_Mutation_p.I412V|ZBTB38_uc010huo.2_Missense_Mutation_p.I415V|ZBTB38_uc003ety.2_Missense_Mutation_p.I415V|ZBTB38_uc010hup.2_Missense_Mutation_p.I416V	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	415					positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CTATCCTACCATTGGACAAAA	0.448000													27	77					0	0	0	0
GRK7	131890	broad.mit.edu	37	3	141499575	141499575	+	Silent	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr3:141499575G>T	uc011bnd.1	+	2	1056	c.972G>T	c.(970-972)CTG>CTT	p.L324L		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	324	Protein kinase.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						ATGTGCTTCTGGATGACCTCG	0.587000													6	27					0.000157383	0.000168829	1	0
AADAC	13	broad.mit.edu	37	3	151532078	151532078	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr3:151532078T>C	uc003eze.2	+	1	218	c.128T>C	c.(127-129)ATA>ACA	p.I43T		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	43	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			CTGAAAACTATACAAAATTTG	0.348000													3	21					0	0	0	0
SI	6476	broad.mit.edu	37	3	164735778	164735778	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr3:164735778A>T	uc003fei.2	-	29	3562	c.3500T>A	c.(3499-3501)TTA>TAA	p.L1167*		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1167	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity	p.L1167*(1)		ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GCTGTTGAGTAAGAAAACACC	0.338000										HNSCC(35;0.089)			26	31					0	0	0	0
CLDN11	5010	broad.mit.edu	37	3	170150427	170150427	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr3:170150427C>T	uc003fgx.2	+	3	709	c.507C>T	c.(505-507)CTC>CTT	p.L169L	CLDN11_uc011bpt.1_Intron|CLDN11_uc003fgy.2_Silent_p.L85L	NM_005602	NP_005593	O75508	CLD11_HUMAN	claudin 11	169	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			central_nervous_system(1)	1	all_cancers(22;5.62e-23)|all_epithelial(15;7.54e-28)|all_lung(20;2.51e-17)|Lung NSC(18;1.02e-16)|Ovarian(172;0.000567)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			TGCTGTGCCTCGTGGGTGGCT	0.592000													31	131					0	0	0	0
FNDC3B	64778	broad.mit.edu	37	3	172070689	172070689	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr3:172070689G>C	uc003fhy.2	+	22	2783	c.2611G>C	c.(2611-2613)GAG>CAG	p.E871Q	FNDC3B_uc003fhz.3_Missense_Mutation_p.E871Q	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	871	Fibronectin type-III 7.					endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		CTGTGTCCTGGAGGAGGAGCC	0.567000													26	68					0	0	0	0
PIK3CA	5290	broad.mit.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	A	A	rs121913273		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr3:178936082G>A	uc003fjk.2	+	10	1781	c.1624G>A	c.(1624-1626)GAA>AAA	p.E542K		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	542	PI3K helical.		E -> V (in cancer).|E -> K (in KERSEB; shows an increase in lipid kinase activity; oncogenic in vivo; occurs in the interface between the PI3K helical domain and the nSH2 (N-terminal SH2) region of the p85 regulatory subunit and may reduce the inhibitory effect of p85; requires interaction with RAS to induce cellular transformation).|E -> Q (in cancer).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E542K(481)|p.E542V(8)|p.E542Q(6)|p.E542G(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TCCTCTCTCTGAAATCACTGA	0.333000	E542K(SW948_LARGE_INTESTINE)|E542K(T84_LARGE_INTESTINE)|E542K(CAL51_BREAST)|E542K(JHUEM1_ENDOMETRIUM)|E542K(NCIH1341_LUNG)|E542K(VMCUB1_URINARY_TRACT)|E542K(BT483_BREAST)|E542K(HGC27_STOMACH)|E542K(IM95_STOMACH)	57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			11	59					0	0	0	0
ZNF595	152687	broad.mit.edu	37	4	86787	86787	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr4:86787A>G	uc003fzv.1	+	6	1549	c.1393A>G	c.(1393-1395)ACA>GCA	p.T465A	ZNF595_uc003fzu.1_Intron|ZNF718_uc003fzt.3_Intron|ZNF595_uc011bus.1_Missense_Mutation_p.T233A|ZNF595_uc011but.1_Missense_Mutation_p.T233A	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	465					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		TACACGGTCCACAACACTGAA	0.393000													7	23					0	0	0	0
ZAR1	326340	broad.mit.edu	37	4	48496198	48496198	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr4:48496198C>T	uc003gyd.2	+	4	1212	c.1212C>T	c.(1210-1212)TGC>TGT	p.C404C		NM_175619	NP_783318	Q86SH2	ZAR1_HUMAN	zygote arrest 1	404					multicellular organismal development	cytoplasm|membrane	bile acid:sodium symporter activity				0						AAGATTTGTGCGGTAGATGCA	0.478000													14	62					0	0	0	0
ANKRD17	26057	broad.mit.edu	37	4	74007554	74007554	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr4:74007554G>C	uc003hgp.2	-	14	2353	c.2236C>G	c.(2236-2238)CGT>GGT	p.R746G	ANKRD17_uc003hgo.2_Missense_Mutation_p.R633G|ANKRD17_uc003hgq.2_Missense_Mutation_p.R746G|ANKRD17_uc003hgr.2_Missense_Mutation_p.R746G|ANKRD17_uc011cbd.1_Missense_Mutation_p.R311G	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	746					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			ACTGGTACACGAGGAGCCTAA	0.418000													7	27					0	0	0	0
ART3	419	broad.mit.edu	37	4	77033553	77033553	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr4:77033553C>T	uc003hjo.2	+	12	1170	c.1051C>T	c.(1051-1053)CCT>TCT	p.P351S	ART3_uc003hjk.2_Missense_Mutation_p.P329S|ART3_uc003hjn.2_Missense_Mutation_p.P340S|ART3_uc003hjp.2_RNA|ART3_uc010ijb.2_RNA|ART3_uc003hjq.2_RNA|ART3_uc003hjr.2_Missense_Mutation_p.P332S|ART3_uc010ijc.2_Missense_Mutation_p.P310S|ART3_uc010ijd.2_Missense_Mutation_p.P310S	NM_001130016	NP_001123488	Q13508	NAR3_HUMAN	ADP-ribosyltransferase 3 isoform a	351					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity			ovary(2)	2			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			AGGTCCAGTTCCTGTTCCAGG	0.403000													22	72					0	0	0	0
FRAS1	80144	broad.mit.edu	37	4	79455676	79455676	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr4:79455676C>G	uc003hlb.2	+	71	11439	c.10999C>G	c.(10999-11001)CAG>GAG	p.Q3667E		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3662	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CACTGAATTTCAGCTCTGCAA	0.418000													42	115					0	0	0	0
FAT1	2195	broad.mit.edu	37	4	187525003	187525003	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr4:187525003G>C	uc003izf.2	-	19	10865	c.10677C>G	c.(10675-10677)TAC>TAG	p.Y3559*		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3559	Extracellular (Potential).|Cadherin 33.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CGCCACCTGAGTATTCTTCTC	0.468000										HNSCC(5;0.00058)			15	23					0	0	0	0
ZFYVE16	9765	broad.mit.edu	37	5	79734575	79734575	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr5:79734575A>G	uc003kgr.3	+	4	2373	c.2071A>G	c.(2071-2073)ATA>GTA	p.I691V	ZFYVE16_uc010jak.1_Missense_Mutation_p.I691V|ZFYVE16_uc003kgp.2_Missense_Mutation_p.I691V|ZFYVE16_uc003kgq.3_Missense_Mutation_p.I691V|ZFYVE16_uc003kgs.3_Missense_Mutation_p.I691V	NM_001105251	NP_001098721	Q7Z3T8	ZFY16_HUMAN	zinc finger, FYVE domain containing 16	691					BMP signaling pathway|endosome transport|protein targeting to lysosome|regulation of endocytosis|vesicle organization	early endosome membrane	1-phosphatidylinositol binding|metal ion binding|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|protein transporter activity				0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.6e-46)|Epithelial(54;2.02e-41)|all cancers(79;5.05e-36)		CACTTGTGCTATAGATTCTAC	0.388000													16	35					0	0	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834543	101834543	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr5:101834543G>A	uc003knn.2	-	1	178	c.6C>T	c.(4-6)TTC>TTT	p.F2F	SLCO6A1_uc003kno.2_Silent_p.F2F|SLCO6A1_uc003knp.2_Silent_p.F2F|SLCO6A1_uc003knq.2_Silent_p.F2F	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	2	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CGACGCCTACGAACATGGCTC	0.711000													31	140					0	0	0	0
RAPGEF6	51735	broad.mit.edu	37	5	130764620	130764620	+	Silent	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr5:130764620C>G	uc003kvn.1	-	27	4961	c.4755G>C	c.(4753-4755)GTG>GTC	p.V1585V	RAPGEF6_uc003kvp.1_Silent_p.V1635V|RAPGEF6_uc003kvo.1_Intron|RAPGEF6_uc010jdi.1_Silent_p.V1593V|RAPGEF6_uc010jdj.1_Intron|RAPGEF6_uc003kvm.1_Silent_p.V508V	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	1585					Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		CTGCATCAGTCACATCTCCTA	0.418000													22	74					0	0	0	0
AFF4	27125	broad.mit.edu	37	5	132222032	132222032	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr5:132222032C>T	uc003kyd.2	-	18	3477	c.3069G>A	c.(3067-3069)AAG>AAA	p.K1023K	AFF4_uc011cxk.1_Silent_p.K701K	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	1023					transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCTTTGAGTACTTCAGAGCAT	0.473000													38	82					0	0	0	0
PHF15	23338	broad.mit.edu	37	5	133896507	133896507	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr5:133896507A>G	uc003kzo.1	+	6	723	c.544A>G	c.(544-546)ATG>GTG	p.M182V	PHF15_uc011cxt.1_Missense_Mutation_p.M182V|PHF15_uc003kzk.2_Missense_Mutation_p.M198V|PHF15_uc003kzl.2_Missense_Mutation_p.M182V|PHF15_uc003kzm.2_Missense_Mutation_p.M182V|PHF15_uc003kzn.2_Missense_Mutation_p.M182V	NM_015288	NP_056103	Q9NQC1	JADE2_HUMAN	PHD finger protein 15	182					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CCACCAGAATATGGCCAGGGC	0.617000													10	31					0	0	0	0
C5orf24	134553	broad.mit.edu	37	5	134190804	134190804	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr5:134190804A>G	uc003kzx.2	+	2	275	c.214A>G	c.(214-216)ATA>GTA	p.I72V	C5orf24_uc003kzy.3_Missense_Mutation_p.I72V|C5orf24_uc003kzz.2_Missense_Mutation_p.I72V	NM_152409	NP_689622	Q7Z6I8	CE024_HUMAN	hypothetical protein LOC134553	72											0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TGGCAGAAGCATAGAAATAAA	0.453000													28	55					0	0	0	0
ODZ2	57451	broad.mit.edu	37	5	167655115	167655115	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr5:167655115A>G	uc010jjd.2	+	25	5473	c.5473A>G	c.(5473-5475)ATC>GTC	p.I1825V	ODZ2_uc003lzr.3_Missense_Mutation_p.I1595V|ODZ2_uc003lzt.3_Missense_Mutation_p.I1198V|ODZ2_uc010jje.2_Missense_Mutation_p.I1089V	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CAAAGTCACCATCTTTGGCAG	0.498000													9	15					0	0	0	0
FOXI1	2299	broad.mit.edu	37	5	169535280	169535280	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr5:169535280C>T	uc003mai.3	+	2	847	c.802C>T	c.(802-804)CCC>TCC	p.P268S	FOXI1_uc003maj.3_Intron	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	268					epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGAGAAGCGGCCCTCCCCTCC	0.647000									Pendred_syndrome				17	63					0	0	0	0
ERVFRDE1	405754	broad.mit.edu	37	6	11105000	11105000	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr6:11105000G>A	uc003mzt.2	-	2	914	c.544C>T	c.(544-546)CAG>TAG	p.Q182*	LOC221710_uc003mzr.2_Intron|LOC221710_uc011dio.1_Intron	NM_207582	NP_997465	P60508	EFRD1_HUMAN	syncytin 2	182	Extracellular (Potential).					integral to membrane|plasma membrane|virion					0						AAAGTTCCCTGAGGAAAAGTA	0.453000													58	176					0	0	0	0
BTN1A1	696	broad.mit.edu	37	6	26509146	26509146	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr6:26509146C>G	uc003nif.3	+	7	1345	c.1325C>G	c.(1324-1326)TCT>TGT	p.S442C		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	442	B30.2/SPRY.|Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						AATGATGGATCTGATATCTAT	0.517000													11	37					0	0	0	0
VARS	7407	broad.mit.edu	37	6	31752260	31752260	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr6:31752260G>A	uc003nxe.2	-	12	1910	c.1487C>T	c.(1486-1488)ACA>ATA	p.T496I	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	496					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity	p.T496I(1)		upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	GGTGCGACCTGTCAGCTCCTT	0.587000													23	60					0	0	0	0
PTK7	5754	broad.mit.edu	37	6	43096755	43096755	+	Silent	SNP	C	T	T	rs140431672		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr6:43096755C>T	uc003oub.1	+	2	318	c.120C>T	c.(118-120)TCC>TCT	p.S40S	PTK7_uc003ouc.1_Silent_p.S40S|PTK7_uc003oud.1_Silent_p.S40S|PTK7_uc003oue.1_Silent_p.S40S|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Silent_p.S48S|PTK7_uc003oua.2_Silent_p.S40S	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	40	Ig-like C2-type 1.|Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			AGCCGTCCTCCCAGGATGCAC	0.637000													11	50					0	0	0	0
RNGTT	8732	broad.mit.edu	37	6	89650812	89650812	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr6:89650812G>C	uc003pmr.2	-	2	372	c.152C>G	c.(151-153)TCA>TGA	p.S51*	RNGTT_uc003pms.2_Nonsense_Mutation_p.S51*|RNGTT_uc011dzu.1_Intron|RNGTT_uc003pmt.2_Nonsense_Mutation_p.S51*	NM_003800	NP_003791	O60942	MCE1_HUMAN	RNA guanylyltransferase and 5'-phosphatase	51	TPase.				interspecies interaction between organisms|mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	GTP binding|mRNA guanylyltransferase activity|polynucleotide 5'-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.S51*(1)		upper_aerodigestive_tract(1)	1		all_cancers(76;4.07e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;6.86e-05)		BRCA - Breast invasive adenocarcinoma(108;0.151)		TAGGTAATTTGAGAGCATGCT	0.343000													15	60					0	0	0	0
ROS1	6098	broad.mit.edu	37	6	117710592	117710592	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr6:117710592G>A	uc003pxp.1	-	12	1879	c.1680C>T	c.(1678-1680)CGC>CGT	p.R560R	ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	560	Fibronectin type-III 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity	p.R560C(1)		lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GCTCCTGCGGGCGGCCTGGCA	0.552000			T	GOPC|ROS1	glioblastoma|NSCLC								26	83					0	0	0	0
C6orf115	58527	broad.mit.edu	37	6	139363993	139363993	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr6:139363993C>T	uc003qil.2	+	3	399	c.199C>T	c.(199-201)CTG>TTG	p.L67L	C6orf115_uc003qim.2_Silent_p.L67L	NM_021243	NP_067066	Q9P1F3	CF115_HUMAN	hypothetical protein LOC58527	67											0				GBM - Glioblastoma multiforme(68;0.000278)|OV - Ovarian serous cystadenocarcinoma(155;0.000413)		AGAGCTGCTTCTGCAAGGTGT	0.373000													34	101					0	0	0	0
GRM1	2911	broad.mit.edu	37	6	146720766	146720766	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr6:146720766A>G	uc010khw.1	+	8	3061	c.2591A>G	c.(2590-2592)AAG>AGG	p.K864R	GRM1_uc010khv.1_Missense_Mutation_p.K864R|GRM1_uc003qll.2_Missense_Mutation_p.K864R|GRM1_uc011edz.1_Missense_Mutation_p.K864R|GRM1_uc011eea.1_Missense_Mutation_p.K864R	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	864	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GGCGATGGCAAGCTGCCCTGC	0.493000													8	27					0	0	0	0
AKAP12	9590	broad.mit.edu	37	6	151672243	151672243	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr6:151672243T>C	uc011eep.1	+	4	2957	c.2717T>C	c.(2716-2718)ATT>ACT	p.I906T	AKAP12_uc003qoe.2_Missense_Mutation_p.I906T|AKAP12_uc003qof.2_Missense_Mutation_p.I808T|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Missense_Mutation_p.I801T	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	906					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding	p.I906T(1)		large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		GCTACCATTATTGAAGAAAGG	0.507000													15	41					0	0	0	0
SP8	221833	broad.mit.edu	37	7	20824320	20824321	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr7:20824320_20824321GC>AA	uc003suy.2	-	3	1302_1303	c.1061_1062GC>TT	c.(1060-1062)GGC>GTT	p.G354V	SP8_uc003suz.2_Missense_Mutation_p.G372V	NM_198956	NP_945194	Q8IXZ3	SP8_HUMAN	Sp8 transcription factor isoform 2	354	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						AGCTGTGCAGGCCCTTGCGCCG	0.718000													8	20					0	0	0	0
C7orf36	57002	broad.mit.edu	37	7	39606030	39606030	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr7:39606030C>T	uc003thc.3	+	1	22	c.13C>T	c.(13-15)CAA>TAA	p.Q5*		NM_020192	NP_064577	Q9NRH1	CG036_HUMAN	hypothetical protein LOC57002	5											0						GTCGTGGGTTCAAGCAGCCTC	0.622000													15	26					0	0	0	0
PCLO	27445	broad.mit.edu	37	7	82545553	82545553	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr7:82545553G>T	uc003uhx.2	-	7	12038	c.11749C>A	c.(11749-11751)CAG>AAG	p.Q3917K	PCLO_uc003uhv.2_Missense_Mutation_p.Q3917K|PCLO_uc010lec.2_Missense_Mutation_p.Q882K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3848	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAAACTTGCTGATGGTACAAA	0.463000													119	316					3.89651e-80	4.46397e-80	1	0
PRKAR2B	5577	broad.mit.edu	37	7	106781346	106781346	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr7:106781346G>A	uc003vdx.2	+	5	710	c.535G>A	c.(535-537)GAG>AAG	p.E179K		NM_002736	NP_002727	P31323	KAP3_HUMAN	cAMP-dependent protein kinase, regulatory	179	cAMP 1.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|transmembrane transport|water transport	centrosome|cytosol|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity			ovary(1)	1						CAAAGATGGGGAGCATGTAAT	0.328000													7	44					0	0	0	0
NDUFA5	4698	broad.mit.edu	37	7	123185711	123185711	+	Nonsense_Mutation	SNP	A	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr7:123185711A>C	uc003vks.2	-	4	312	c.203T>G	c.(202-204)TTA>TGA	p.L68*	NDUFA5_uc003vkr.2_RNA	NM_005000	NP_004991	Q16718	NDUA5_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	68					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0					NADH(DB00157)	TTGGTCTTCTAATTTTTTAAC	0.303000													3	82					0	0	0	0
NUP205	23165	broad.mit.edu	37	7	135279436	135279436	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr7:135279436G>C	uc003vsw.2	+	13	2003	c.1972G>C	c.(1972-1974)GAA>CAA	p.E658Q		NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	658					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						AAAATCTCCTGAAATTGCTGC	0.463000													20	48					0	0	0	0
KIAA1549	57670	broad.mit.edu	37	7	138602949	138602949	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr7:138602949C>G	uc011kql.1	-	2	1472	c.1423G>C	c.(1423-1425)GAG>CAG	p.E475Q	KIAA1549_uc003vuk.3_Missense_Mutation_p.E425Q|KIAA1549_uc011kqj.1_Missense_Mutation_p.E475Q	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	475						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GGATCTTCCTCAAATTCAGAG	0.483000			O	BRAF	pilocytic astrocytoma								14	31					0	0	0	0
PRSS1	5644	broad.mit.edu	37	7	142458409	142458409	+	Missense_Mutation	SNP	C	T	T	rs147886164	by1000genomes	TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr7:142458409C>T	uc003wak.2	+	2	61	c.44C>T	c.(43-45)GCT>GTT	p.A15V	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_Intron|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	15					digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			ACTCCAGTTGCTGCCCCCTTT	0.502000									Hereditary_Pancreatitis				42	222					0	0	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497609	1497609	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr8:1497609G>A	uc003wpl.2	+	2	847	c.750G>A	c.(748-750)GCG>GCA	p.A250A	DLGAP2_uc003wpm.2_Silent_p.A250A	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	329					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		ACCCCGACGCGCTGCAGAGCC	0.677000													36	65					0	0	0	0
VPS37A	137492	broad.mit.edu	37	8	17142026	17142026	+	Silent	SNP	A	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr8:17142026A>T	uc003wxj.2	+	10	1367	c.1014A>T	c.(1012-1014)GCA>GCT	p.A338A	VPS37A_uc003wxk.2_Silent_p.A313A|VPS37A_uc003wxl.2_Silent_p.A109A	NM_152415	NP_689628	Q8NEZ2	VP37A_HUMAN	hepatocellular carcinoma related protein 1	338	VPS37 C-terminal.				cellular membrane organization|endosome transport|protein transport	centrosome|late endosome membrane|nucleus					0				Colorectal(111;0.0553)|COAD - Colon adenocarcinoma(73;0.212)		AAGTAGCTGCACATGAAGCTG	0.393000													27	21					0	0	0	0
STC1	6781	broad.mit.edu	37	8	23709899	23709899	+	Splice_Site	SNP	T	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr8:23709899T>A	uc003xdw.1	-	2	403	c.119_splice	c.e2-1	p.A40_splice		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor						cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity	p.?(1)		skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		CCACTTCAGCTGAAAGAGACA	0.507000													19	34					0	0	0	0
ZFHX4	79776	broad.mit.edu	37	8	77768159	77768159	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr8:77768159G>A	uc003yav.2	+	10	9254	c.8867G>A	c.(8866-8868)GGA>GAA	p.G2956E	ZFHX4_uc003yau.1_Missense_Mutation_p.G3001E|ZFHX4_uc003yaw.1_Missense_Mutation_p.G2956E	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2956						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AATCAAGGCGGAACGGAAGGC	0.463000										HNSCC(33;0.089)			9	30					0	0	0	0
Unknown	0	broad.mit.edu	37	8	81471203	81471203	+	IGR	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr8:81471203G>C								ZBTB10 (36595 upstream) : ZNF704 (79566 downstream)																							TTGACTTCCAGATGGAACAGT	0.393000													4	38					0	0	0	0
CCNE2	9134	broad.mit.edu	37	8	95894373	95894373	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr8:95894373T>C	uc003yhc.2	-	11	1197	c.1088A>G	c.(1087-1089)TAT>TGT	p.Y363C	CCNE2_uc003yhd.2_Missense_Mutation_p.Y363C	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	363					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					CATAGCCAAATAGTTTGTATG	0.363000													21	76					0	0	0	0
VPS13B	157680	broad.mit.edu	37	8	100831673	100831673	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr8:100831673C>T	uc003yiv.2	+	48	8841	c.8730C>T	c.(8728-8730)CCC>CCT	p.P2910P	VPS13B_uc003yiw.2_Silent_p.P2885P	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2910					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			GTGCAGTTCCCATCTCAACAT	0.363000													7	60					0	0	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110456987	110456987	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr8:110456987G>C	uc003yne.2	+	38	4993	c.4889G>C	c.(4888-4890)AGG>ACG	p.R1630T		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1630	Extracellular (Potential).|IPT/TIG 8.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTTGGTATCAGGGAAACTGTC	0.413000										HNSCC(38;0.096)			67	293					0	0	0	0
CSMD3	114788	broad.mit.edu	37	8	114327022	114327022	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr8:114327022C>T	uc003ynu.2	-	2	338	c.179G>A	c.(178-180)GGA>GAA	p.G60E	CSMD3_uc003ynt.2_Missense_Mutation_p.G20E|CSMD3_uc011lhx.1_Missense_Mutation_p.G60E|CSMD3_uc010mcx.1_Missense_Mutation_p.G60E|CSMD3_uc003ynx.3_Missense_Mutation_p.G60E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	60	Helical; (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATAAATAAATCCTGCAACAAA	0.318000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			22	93					0	0	0	0
MTBP	27085	broad.mit.edu	37	8	121475947	121475947	+	Silent	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr8:121475947T>C	uc003ypc.1	+	10	1038	c.993T>C	c.(991-993)AGT>AGC	p.S331S	MTBP_uc011lie.1_RNA	NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	331					cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			TGACAAACAGTACCAAACAGA	0.343000													24	136					0	0	0	0
FAM84B	157638	broad.mit.edu	37	8	127569307	127569307	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr8:127569307C>A	uc003yrz.1	-	2	612	c.328G>T	c.(328-330)GAG>TAG	p.E110*		NM_174911	NP_777571	Q96KN1	FA84B_HUMAN	family with sequence similarity 84, member B	110						cytoplasm|plasma membrane	protein binding				0	Ovarian(5;9.43e-05)|Esophageal squamous(12;0.0012)|Hepatocellular(40;0.128)|Myeloproliferative disorder(2;0.135)		STAD - Stomach adenocarcinoma(47;0.000556)|Colorectal(2;0.0102)|Lung(2;0.0136)|READ - Rectum adenocarcinoma(2;0.0723)			AGCAGGTTCTCGGGCGTGTAG	0.617000													25	25					3.08376e-08	3.35377e-08	1	0
PLEC	5339	broad.mit.edu	37	8	144993792	144993792	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr8:144993792C>T	uc003zaf.1	-	32	10778	c.10608G>A	c.(10606-10608)GTG>GTA	p.V3536V	PLEC_uc003zab.1_Silent_p.V3399V|PLEC_uc003zac.1_Silent_p.V3403V|PLEC_uc003zad.2_Silent_p.V3399V|PLEC_uc003zae.1_Silent_p.V3367V|PLEC_uc003zag.1_Silent_p.V3377V|PLEC_uc003zah.2_Silent_p.V3385V|PLEC_uc003zaj.2_Silent_p.V3426V	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3536	Plectin 13.|Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GCACGGGGTCCACCAGGAAGC	0.692000													10	26					0	0	0	0
SLC24A2	25769	broad.mit.edu	37	9	19516220	19516220	+	Silent	SNP	G	C	C	rs41270119		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr9:19516220G>C	uc003zoa.1	-	10	1979	c.1917C>G	c.(1915-1917)CTC>CTG	p.L639L	SLC24A2_uc003zob.1_Silent_p.L622L	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	639	Helical; (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		ACACAAAGTAGAGGCCAAACA	0.488000													33	207					0	0	0	0
ZCCHC6	79670	broad.mit.edu	37	9	88961250	88961250	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr9:88961250C>G	uc004aoq.2	-	3	881	c.666G>C	c.(664-666)GAG>GAC	p.E222D	ZCCHC6_uc011ltf.1_RNA|ZCCHC6_uc004aor.2_RNA|ZCCHC6_uc004aos.2_RNA|ZCCHC6_uc004aot.2_Missense_Mutation_p.E222D|ZCCHC6_uc004aou.2_Missense_Mutation_p.E222D|ZCCHC6_uc004aov.2_Missense_Mutation_p.E222D|ZCCHC6_uc004aow.2_Missense_Mutation_p.E222D	NM_024617	NP_078893	Q5VYS8	TUT7_HUMAN	zinc finger, CCHC domain containing 6	222					RNA 3'-end processing		nucleic acid binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)	2						TCTTCAGTCTCTCCTCAGCCT	0.423000													30	134					0	0	0	0
Unknown	0	broad.mit.edu	37	9	98775038	98775038	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr9:98775038C>T	uc010msa.1	+	4	2025	c.1149C>T	c.(1147-1149)GAC>GAT	p.D383D	uc011lun.1_Intron					RecName: Full=Uncharacterized protein C9orf102;																		CCATGAAAGACCAACAGGACC	0.423000													9	35					0	0	0	0
GRIN3A	116443	broad.mit.edu	37	9	104433149	104433149	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr9:104433149C>G	uc004bbp.1	-	3	2146	c.1545G>C	c.(1543-1545)TTG>TTC	p.L515F	GRIN3A_uc004bbq.1_Missense_Mutation_p.L515F	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	515	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	TAACCACTCTCAAGTGTAGCT	0.507000													26	142					0	0	0	0
CYLC2	1539	broad.mit.edu	37	9	105767470	105767470	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr9:105767470A>G	uc004bbs.2	+	5	627	c.557A>G	c.(556-558)AAG>AGG	p.K186R		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	186	3 X approximate tandem repeats.|31 X 3 AA repeats of K-K-X.|2.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				ggaggtgcaaagaaagataac	0.139000													6	12					0	0	0	0
GLE1	2733	broad.mit.edu	37	9	131285595	131285595	+	Silent	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr9:131285595A>G	uc004bvj.2	+	5	732	c.618A>G	c.(616-618)AAA>AAG	p.K206K	GLE1_uc004bvi.2_Silent_p.K206K|GLE1_uc010myd.2_5'UTR	NM_001003722	NP_001003722	Q53GS7	GLE1_HUMAN	GLE1 RNA export mediator homolog isoform 1	206	Potential.				poly(A)+ mRNA export from nucleus|protein transport|transmembrane transport	cytoplasm|nuclear pore	protein binding				0						AGAAGCTAAAAGCTGAGCACC	0.473000													3	86					0	0	0	0
SARDH	1757	broad.mit.edu	37	9	136582547	136582547	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr9:136582547C>A	uc004cep.3	-	8	1185	c.1051G>T	c.(1051-1053)GAC>TAC	p.D351Y	SARDH_uc004ceo.2_Missense_Mutation_p.D351Y|SARDH_uc011mdn.1_Missense_Mutation_p.D351Y|SARDH_uc011mdo.1_Missense_Mutation_p.D183Y	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	351					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		CAGTCCAGGTCAAAGAGGCCG	0.597000													10	43					2.80697e-09	3.08114e-09	1	0
NLGN4X	57502	broad.mit.edu	37	X	6069124	6069124	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:6069124A>C	uc010ndh.2	-	2	885	c.384T>G	c.(382-384)TTT>TTG	p.F128L	NLGN4X_uc004crp.2_Missense_Mutation_p.F128L|NLGN4X_uc004crq.2_Missense_Mutation_p.F128L|NLGN4X_uc010ndi.2_Missense_Mutation_p.F128L|NLGN4X_uc004crr.2_Missense_Mutation_p.F128L|NLGN4X_uc010ndj.2_Missense_Mutation_p.F128L	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	128	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						AATTGGCGGTAAACCAGATGG	0.478000													25	90					0	0	0	0
TBL1X	6907	broad.mit.edu	37	X	9652149	9652149	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:9652149C>T	uc010ndq.2	+	6	646	c.278C>T	c.(277-279)ACG>ATG	p.T93M	TBL1X_uc004csq.3_Missense_Mutation_p.T42M|TBL1X_uc010ndr.2_Missense_Mutation_p.T42M|TBL1X_uc004csr.2_Missense_Mutation_p.T93M|TBL1X_uc004css.2_Missense_Mutation_p.T44M	NM_001139466	NP_001132938	O60907	TBL1X_HUMAN	transducin beta-like 1X isoform a	93	F-box-like.				canonical Wnt receptor signaling pathway|cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|sensory perception of sound|transcription, DNA-dependent	spindle microtubule|transcriptional repressor complex	beta-catenin binding|histone binding|protein C-terminus binding|protein domain specific binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Hepatocellular(5;0.000888)				ATCAATGGGACGCTAGTGCCA	0.567000													16	60					0	0	0	0
OFD1	8481	broad.mit.edu	37	X	13769430	13769430	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:13769430A>G	uc004cvp.3	+	10	1357	c.998A>G	c.(997-999)CAG>CGG	p.Q333R	OFD1_uc004cvr.3_5'UTR|OFD1_uc011mil.1_5'UTR|OFD1_uc004cvq.3_Missense_Mutation_p.Q193R|OFD1_uc010nen.2_Missense_Mutation_p.Q332R|OFD1_uc004cvs.3_Intron|OFD1_uc004cvu.3_Intron|OFD1_uc004cvv.3_Intron|OFD1_uc010neo.1_Intron	NM_003611	NP_003602	O75665	OFD1_HUMAN	oral-facial-digital syndrome 1	333	Potential.				cilium movement involved in determination of left/right asymmetry|G2/M transition of mitotic cell cycle	centriole|cilium|cytosol|microtubule basal body|nuclear membrane	alpha-tubulin binding|gamma-tubulin binding				0						AGACAGGAGCAGAATATAAAG	0.303000													24	48					0	0	0	0
PRDX4	10549	broad.mit.edu	37	X	23700515	23700515	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:23700515G>A	uc004dam.2	+	5	645	c.602G>A	c.(601-603)GGT>GAT	p.G201D		NM_006406	NP_006397	Q13162	PRDX4_HUMAN	peroxiredoxin 4	201	Thioredoxin.				cell redox homeostasis|I-kappaB phosphorylation		thioredoxin peroxidase activity	p.G201D(1)		upper_aerodigestive_tract(1)	1						TTTTACAGAGGTCTCTTCATT	0.373000													12	37					0	0	0	0
FAM47C	442444	broad.mit.edu	37	X	37027222	37027222	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:37027222C>T	uc004ddl.1	+	1	753	c.739C>T	c.(739-741)CGC>TGC	p.R247C		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	247										ovary(3)	3						GTCCCATCTCCGCCCAGAGCC	0.627000													18	66					0	0	0	0
NDUFB11	54539	broad.mit.edu	37	X	47002066	47002066	+	Silent	SNP	G	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:47002066G>A	uc004dhd.2	-	2	816	c.285C>T	c.(283-285)GTC>GTT	p.V95V	NDUFB11_uc004dhc.2_Silent_p.V95V|RBM10_uc004dhe.1_5'Flank|RBM10_uc004dhf.2_5'Flank|RBM10_uc004dhg.2_5'Flank|RBM10_uc004dhh.2_5'Flank|RBM10_uc010nhq.2_5'Flank|RBM10_uc004dhi.2_5'Flank	NM_001135998	NP_001129470	Q9NX14	NDUBB_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	95	Helical; (Potential).				respiratory electron transport chain|transport	integral to membrane|mitochondrial respiratory chain complex I					0						GGATGATGGAGACGCCAAAGA	0.537000													27	61					0	0	0	0
HDAC6	10013	broad.mit.edu	37	X	48665100	48665100	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:48665100A>T	uc011mmi.1	+	8	714	c.619A>T	c.(619-621)ATG>TTG	p.M207L	HDAC6_uc004dks.1_Missense_Mutation_p.M207L|HDAC6_uc010nig.1_Missense_Mutation_p.M55L|HDAC6_uc004dkt.1_Missense_Mutation_p.M207L|HDAC6_uc004dku.3_3'UTR|HDAC6_uc011mmj.1_Missense_Mutation_p.M152L|HDAC6_uc011mmk.1_Missense_Mutation_p.M188L	NM_006044	NP_006035	Q9UBN7	HDAC6_HUMAN	histone deacetylase 6	207	Histone deacetylase 1.				aggresome assembly|cellular response to hydrogen peroxide|Hsp90 deacetylation|lysosome localization|macroautophagy|misfolded or incompletely synthesized protein catabolic process|negative regulation of proteolysis|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|polyubiquitinated misfolded protein transport|positive regulation of apoptosis|positive regulation of cellular chaperone-mediated protein complex assembly|positive regulation of epithelial cell migration|positive regulation of receptor biosynthetic process|positive regulation of signal transduction|regulation of androgen receptor signaling pathway|regulation of receptor activity|response to growth factor stimulus|response to toxin|transcription, DNA-dependent|tubulin deacetylation	aggresome|caveola|cell leading edge|cytosol|histone deacetylase complex|microtubule associated complex|perinuclear region of cytoplasm	actin binding|alpha-tubulin binding|beta-catenin binding|dynein complex binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|Hsp90 protein binding|microtubule binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|polyubiquitin binding|tau protein binding|tubulin deacetylase activity|zinc ion binding	p.M207L(1)		ovary(3)|upper_aerodigestive_tract(1)	4					Vorinostat(DB02546)	CCGGAATGGCATGGCCATCAT	0.473000													13	31					0	0	0	0
HEPH	9843	broad.mit.edu	37	X	65392280	65392280	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:65392280A>T	uc011moz.1	+	3	320	c.260A>T	c.(259-261)GAC>GTC	p.D87V	HEPH_uc004dwn.2_Missense_Mutation_p.D87V|HEPH_uc004dwo.2_5'UTR|HEPH_uc010nkr.2_Missense_Mutation_p.D87V|HEPH_uc011mpa.1_Missense_Mutation_p.D87V	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	84	Extracellular (Potential).|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						TACAAGGATGACTCATACACA	0.478000													13	41					0	0	0	0
HEPH	9843	broad.mit.edu	37	X	65393633	65393633	+	Silent	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:65393633C>T	uc011moz.1	+	4	684	c.624C>T	c.(622-624)ACC>ACT	p.T208T	HEPH_uc004dwn.2_Silent_p.T208T|HEPH_uc004dwo.2_5'UTR|HEPH_uc010nkr.2_Silent_p.T208T|HEPH_uc011mpa.1_Silent_p.T208T	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	205	Extracellular (Potential).|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						CTCTCATCACCTGTAAAAGAG	0.498000													5	13					0	0	0	0
TAF1	6872	broad.mit.edu	37	X	70612527	70612527	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:70612527T>A	uc004dzu.3	+	19	2938	c.2887T>A	c.(2887-2889)TTC>ATC	p.F963I	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.F984I|TAF1_uc004dzv.3_Missense_Mutation_p.F137I	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	963					G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				TGGTGAAGGATTCTCCTATGT	0.488000													17	78					0	0	0	0
GPR174	84636	broad.mit.edu	37	X	78427029	78427029	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:78427029G>C	uc004edg.1	+	1	561	c.525G>C	c.(523-525)AGG>AGC	p.R175S		NM_032553	NP_115942	Q9BXC1	GP174_HUMAN	putative purinergic receptor FKSG79	175	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)|central_nervous_system(1)	2						TTCCTACCAGGAATGTCAACC	0.483000										HNSCC(63;0.18)			19	64					0	0	0	0
TBX22	50945	broad.mit.edu	37	X	79283536	79283536	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:79283536T>C	uc010nmg.1	+	8	1044	c.910T>C	c.(910-912)TTC>CTC	p.F304L	TBX22_uc004edi.1_Missense_Mutation_p.F184L|TBX22_uc004edj.1_Missense_Mutation_p.F304L	NM_001109878	NP_001103348	Q9Y458	TBX22_HUMAN	T-box 22 isoform 1	304					multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(7)|large_intestine(3)|central_nervous_system(2)|breast(1)|skin(1)|ovary(1)	15						GAGGCCTTCTTTCACTCTCGA	0.368000													13	56					0	0	0	0
HDX	139324	broad.mit.edu	37	X	83724401	83724401	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:83724401T>C	uc004eek.1	-	3	439	c.330A>G	c.(328-330)ATA>ATG	p.I110M	HDX_uc011mqv.1_Missense_Mutation_p.I110M|HDX_uc004eel.1_Missense_Mutation_p.I52M	NM_144657	NP_653258	Q7Z353	HDX_HUMAN	highly divergent homeobox	110						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.I110M(1)		upper_aerodigestive_tract(1)|ovary(1)	2						CTGGACTGTATATACCAGTTA	0.408000													28	89					0	0	0	0
TCEAL7	56849	broad.mit.edu	37	X	102586386	102586386	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:102586386A>T	uc004ekc.1	+	3	268	c.55A>T	c.(55-57)AGG>TGG	p.R19W		NM_152278	NP_689491	Q9BRU2	TCAL7_HUMAN	transcription elongation factor A (SII)-like 7	19					negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus		p.R19W(1)		upper_aerodigestive_tract(1)	1						cgtgccaaagagggaggaaaa	0.050000													3	8					0	0	0	0
VSIG1	340547	broad.mit.edu	37	X	107301344	107301344	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:107301344C>G	uc004eno.2	+	2	287	c.126C>G	c.(124-126)ATC>ATG	p.I42M	VSIG1_uc011msk.1_Missense_Mutation_p.I42M	NM_182607	NP_872413	Q86XK7	VSIG1_HUMAN	V-set and immunoglobulin domain containing 1	42	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane		p.I42M(2)		upper_aerodigestive_tract(1)|ovary(1)	2						TCACTCTCATCTGCATCTACA	0.448000													19	56					0	0	0	0
IL13RA2	3598	broad.mit.edu	37	X	114238663	114238663	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:114238663C>T	uc004epx.2	-	10	1248	c.1123G>A	c.(1123-1125)GAA>AAA	p.E375K		NM_000640	NP_000631	Q14627	I13R2_HUMAN	interleukin 13 receptor, alpha 2 precursor	375	Cytoplasmic (Potential).					extracellular space|integral to membrane|soluble fraction	cytokine receptor activity	p.E375K(1)		upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3						CAGAAAAATTCTGGAATCTAG	0.333000													6	16					0	0	0	0
IGSF1	3547	broad.mit.edu	37	X	130415220	130415220	+	Silent	SNP	T	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:130415220T>G	uc004ewd.2	-	9	1856	c.1618A>C	c.(1618-1620)AGG>CGG	p.R540R	IGSF1_uc004ewe.3_Silent_p.R529R|IGSF1_uc004ewf.2_Silent_p.R520R	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	540	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						CACTTCCACCTTATCCACAGC	0.493000													78	215					0	0	0	0
MCF2	4168	broad.mit.edu	37	X	138686866	138686866	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:138686866T>A	uc004fau.2	-	15	2011	c.1717A>T	c.(1717-1719)AGA>TGA	p.R573*	MCF2_uc004fav.2_Nonsense_Mutation_p.R589*|MCF2_uc011mwl.1_Nonsense_Mutation_p.R550*|MCF2_uc010nsh.1_Nonsense_Mutation_p.R573*|MCF2_uc011mwm.1_Nonsense_Mutation_p.R534*|MCF2_uc011mwn.1_Nonsense_Mutation_p.R718*|MCF2_uc004faw.2_Nonsense_Mutation_p.R633*|MCF2_uc011mwo.1_Nonsense_Mutation_p.R649*	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	573	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					GGTCCCACTCTTTCTGGAGCA	0.308000													8	14					0	0	0	0
HCFC1	3054	broad.mit.edu	37	X	153227686	153227686	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:153227686T>C	uc004fjp.2	-	5	1312	c.784A>G	c.(784-786)ACC>GCC	p.T262A		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	262	Kelch 4.				cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TTTCCGATGGTGGTTGCCGAG	0.587000													3	30					0	0	0	0
Unknown	0	broad.mit.edu	37	1	20200621	20200635	+	IGR	DEL	CACCACCACCACCAC	-	-	rs144954291		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr1:20200621_20200635delCACCACCACCACCAC								RNF186 (58850 upstream) : OTUD3 (8253 downstream)																							ccaccaccatcaccaccaccaccaccaccaccacc	0.214													---	---	---							
FAM24B	196792	broad.mit.edu	37	10	124610029	124610030	+	Frame_Shift_Ins	INS	-	A	A	rs146874803		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr10:124610029_124610030insA	uc001lgt.2	-	3	336_337	c.2_3insT	c.(1-3)ATGfs	p.M1fs	CUZD1_uc001lgs.2_5'UTR|CUZD1_uc010qtz.1_Intron|LOC399815_uc001lgu.3_5'Flank	NM_152644	NP_689857	Q8N5W8	FA24B_HUMAN	hypothetical protein LOC196792 precursor	1						extracellular region					0		all_neural(114;0.0765)|Lung NSC(174;0.163)|all_lung(145;0.205)		Colorectal(40;0.136)|COAD - Colon adenocarcinoma(40;0.141)		CGATGACAGGCATAATCACTGT	0.500													---	---	---							
ODF3	113746	broad.mit.edu	37	11	194639	194641	+	5'Flank	DEL	GGG	-	-	rs112126401		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:194639_194641delGGG	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510	Q96PU9	ODF3A_HUMAN	outer dense fiber of sperm tails 3						cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm				ovary(1)	1		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;3.95e-27)|Epithelial(43;2.66e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.55e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		GAACACACTCGGGGCCACAGCCA	0.552													---	---	---							
TSKU	25987	broad.mit.edu	37	11	76506673	76506675	+	In_Frame_Del	DEL	CTG	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:76506673_76506675delCTG	uc001oxt.2	+	2	185_187	c.13_15delCTG	c.(13-15)CTGdel	p.L9del		NM_015516	NP_056331	Q8WUA8	TSK_HUMAN	tsukushin precursor	9						extracellular region					0	Ovarian(111;0.112)					GCCGTGGCCCCTGCTGCTGCTGC	0.616													---	---	---							
MLL	4297	broad.mit.edu	37	11	118368762	118368763	+	Frame_Shift_Ins	INS	-	T	T	rs140545520		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr11:118368762_118368763insT	uc001pta.2	+	21	5790_5791	c.5767_5768insT	c.(5767-5769)ATGfs	p.M1923fs	MLL_uc001ptb.2_Frame_Shift_Ins_p.M1926fs	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1923					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GAATGTGCATATGGCTGTGATC	0.406			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								---	---	---							
THSD1P1	374500	broad.mit.edu	37	13	52742289	52742303	+	RNA	DEL	CCCTCTGGTAGTTAT	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr13:52742289_52742303delCCCTCTGGTAGTTAT	uc001vgk.2	-	9		c.2295_2309delATAACTACCAGAGGG			THSD1P1_uc001vgm.1_RNA|THSD1P1_uc010adx.1_RNA|THSD1P1_uc010ady.1_RNA|THSD1P1_uc001vgl.1_RNA					Homo sapiens cDNA FLJ14630 fis, clone NT2RP2000459.												0						AGAGAACTGACCCTCTGGTAGTTATCTTTGGGGGA	0.516													---	---	---							
MDGA2	161357	broad.mit.edu	37	14	47566080	47566080	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr14:47566080delT	uc001wwj.3	-	6	1161	c.965delA	c.(964-966)AAGfs	p.K322fs	MDGA2_uc001wwi.3_Frame_Shift_Del_p.K93fs|MDGA2_uc010ani.2_5'UTR	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	322	Ig-like 3.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						GTTGGTGGACTTTTTTGCAGG	0.393													---	---	---							
ABR	29	broad.mit.edu	37	17	914076	914077	+	In_Frame_Ins	INS	-	TCA	TCA			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr17:914076_914077insTCA	uc002fsd.2	-	20	2238_2239	c.2128_2129insTGA	c.(2128-2130)AGT>ATGAGT	p.709_710insM	ABR_uc002fse.2_In_Frame_Ins_p.663_664insM|ABR_uc010vqf.1_In_Frame_Ins_p.160_161insM|ABR_uc010vqg.1_In_Frame_Ins_p.491_492insM|ABR_uc002fsg.2_In_Frame_Ins_p.672_673insM|ABR_uc002fsh.1_In_Frame_Ins_p.317_318insM|ABR_uc002fsf.2_In_Frame_Ins_p.246_247insM	NM_021962	NP_068781	Q12979	ABR_HUMAN	active breakpoint cluster region-related	709_710	Rho-GAP.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity	p.S710delS(1)		upper_aerodigestive_tract(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0228)		GTCCATGTCACTCAGCATCAGC	0.634													---	---	---							
Unknown	0	broad.mit.edu	37	18	49139477	49139477	+	IGR	DEL	A	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr18:49139477delA								MEX3C (415787 upstream) : DCC (727094 downstream)																							AAGAAATAACACttttttttt	0.194													---	---	---							
Unknown	0	broad.mit.edu	37	19	48298226	48298237	+	IGR	DEL	TGCTGGGCGTGG	-	-	rs61719038		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr19:48298226_48298237delTGCTGGGCGTGG								SEPW1 (10287 upstream) : TPRX1 (6263 downstream)																							ATGGAGTCTTTgctgggcgtggtggctcacgc	0.175													---	---	---							
MIR518F	574472	broad.mit.edu	37	19	54201810	54201811	+	5'Flank	INS	-	T	T	rs140028721		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr19:54201810_54201811insT	hsa-mir-518f|MI0003154	+						MIR520B_hsa-mir-520b|MI0003155_5'Flank																	0						GTGGGGttctgttttttttttt	0.213													---	---	---							
Unknown	0	broad.mit.edu	37	2	30410441	30410441	+	IGR	DEL	A	-	-	rs79540423		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:30410441delA								YPEL5 (27043 upstream) : LBH (43956 downstream)																							TTTTTGGGTTAAAAAAAAAAA	0.259													---	---	---							
USP34	9736	broad.mit.edu	37	2	61515972	61515973	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:61515972_61515973insA	uc002sbe.2	-	34	4610_4611	c.4588_4589insT	c.(4588-4590)TGCfs	p.C1530fs		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	1530					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			TGCAAACTGGCATATTAACTTC	0.411													---	---	---							
Unknown	0	broad.mit.edu	37	2	97691619	97691620	+	IGR	INS	-	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:97691619_97691620insA								FAM178B (39318 upstream) : FAHD2B (57704 downstream)																							CACTAAAGTACAAAAAAGCCTG	0.312													---	---	---							
SLC25A12	8604	broad.mit.edu	37	2	172644450	172644451	+	Frame_Shift_Ins	INS	-	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr2:172644450_172644451insG	uc002uhh.2	-	16	1681_1682	c.1592_1593insC	c.(1591-1593)CCAfs	p.P531fs	SLC25A12_uc010fqh.2_Frame_Shift_Ins_p.P424fs	NM_003705	NP_003696	O75746	CMC1_HUMAN	solute carrier family 25, member 12	531	Helical; Name=5; (Potential).|Solcar 3.				gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)		L-Aspartic Acid(DB00128)	GAGATGCAGCTGGGACACCTTT	0.465													---	---	---							
CXCL9	4283	broad.mit.edu	37	4	76928561	76928572	+	In_Frame_Del	DEL	CAAGATGATGCC	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr4:76928561_76928572delCAAGATGATGCC	uc003hjh.1	-	1	70_81	c.31_42delGGCATCATCTTG	c.(31-42)GGCATCATCTTGdel	p.GIIL11del		NM_002416	NP_002407	Q07325	CXCL9_HUMAN	small inducible cytokine B9 precursor	11_14					cell-cell signaling|cellular defense response|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|inflammatory response	extracellular space	chemokine activity			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TCAGAACCAGCAAGATGATGCCCAAGAGGAAA	0.396													---	---	---							
ARHGAP26	23092	broad.mit.edu	37	5	142513667	142513667	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr5:142513667delA	uc011dbj.1	+	19	1869	c.1834delA	c.(1834-1836)AAAfs	p.K612fs	ARHGAP26_uc003lmt.2_Frame_Shift_Del_p.K612fs|ARHGAP26_uc003lmw.2_Frame_Shift_Del_p.K612fs	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	612	Ser-rich.				actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTCAACAGAGAAACGTGAGTC	0.587													---	---	---							
Unknown	0	broad.mit.edu	37	7	57642460	57642461	+	IGR	DEL	CC	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr7:57642460_57642461delCC								ZNF716 (109195 upstream) : None (None downstream)																							CATGAGCAAACCTGGTTCATCA	0.347													---	---	---							
Unknown	0	broad.mit.edu	37	7	64975077	64975078	+	IGR	INS	-	AGAC	AGAC			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr7:64975077_64975078insAGAC								ZNF92 (109080 upstream) : INTS4L2 (137699 downstream)																							AGTGCACCCGAAAACAAAGATG	0.455													---	---	---							
UFSP1	402682	broad.mit.edu	37	7	100486561	100486562	+	Frame_Shift_Del	DEL	CC	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr7:100486561_100486562delCC	uc003uxc.3	-	1	778_779	c.331_332delGG	c.(331-333)GGCfs	p.G111fs	uc010lhm.1_5'Flank	NM_001015072	NP_001015072	Q6NVU6	UFSP1_HUMAN	inactive Ufm1-specific protease 1	111											0	Lung NSC(181;0.041)|all_lung(186;0.0581)					CTCTTGCCAGCCCACCCACCCA	0.584													---	---	---							
JHDM1D	80853	broad.mit.edu	37	7	139810963	139810964	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr7:139810963_139810964insA	uc003vvm.2	-	11	1363_1364	c.1359_1360insT	c.(1357-1362)TTTGAAfs	p.F453fs	JHDM1D_uc010lng.2_RNA	NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	453_454					midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					TCTGGAATTTCAAAGGCATGTT	0.297													---	---	---							
Unknown	0	broad.mit.edu	37	9	88368144	88368144	+	IGR	DEL	A	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chr9:88368144delA								AGTPBP1 (11200 upstream) : NAA35 (187913 downstream)																							aaaaagaaagaaaaaaaaaaT	0.164													---	---	---							
SSX7	280658	broad.mit.edu	37	X	52684344	52684345	+	5'Flank	INS	-	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:52684344_52684345insA	uc004dqx.1	-							NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					TGTTGCTACTGAAAAAACAGTC	0.421													---	---	---							
SLC9A6	10479	broad.mit.edu	37	X	135098865	135098865	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-10A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	6146d8e5-9bb7-47ef-b2e6-c4d9cd4a4cab	g.chrX:135098865delT	uc004ezj.2	+	10	1278	c.1202delT	c.(1201-1203)CTGfs	p.L401fs	SLC9A6_uc004ezk.2_Frame_Shift_Del_p.L433fs	NM_006359	NP_006350	Q92581	SL9A6_HUMAN	solute carrier family 9 (sodium/hydrogen	401	Helical; (Potential).				regulation of pH	early endosome membrane|endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane|recycling endosome membrane	sodium:hydrogen antiporter activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GGGCTGACACTGTTCACCTTC	0.333													---	---	---							
Unknown	0	broad.mit.edu	37	1	101721829	101721834	+	IGR	DEL	AAAAAG	-	-	rs71084874		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr1:101721829_101721834delAAAAAG								S1PR1 (14753 upstream) : OLFM3 (546293 downstream)																							aaaaaaaaaaaaaaagaaTTCCGGAA	0.238													---	---	---							
FAM24B	196792	broad.mit.edu	37	10	124610029	124610030	+	Frame_Shift_Ins	INS	-	A	A	rs146874803		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr10:124610029_124610030insA	uc001lgt.2	-	3	336_337	c.2_3insT	c.(1-3)ATGfs	p.M1fs	CUZD1_uc001lgs.2_5'UTR|CUZD1_uc010qtz.1_Intron|LOC399815_uc001lgu.3_5'Flank	NM_152644	NP_689857	Q8N5W8	FA24B_HUMAN	hypothetical protein LOC196792 precursor	1						extracellular region					0		all_neural(114;0.0765)|Lung NSC(174;0.163)|all_lung(145;0.205)		Colorectal(40;0.136)|COAD - Colon adenocarcinoma(40;0.141)		CGATGACAGGCATAATCACTGT	0.500													---	---	---							
MLL	4297	broad.mit.edu	37	11	118368762	118368763	+	Frame_Shift_Ins	INS	-	T	T	rs140545520		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr11:118368762_118368763insT	uc001pta.2	+	21	5790_5791	c.5767_5768insT	c.(5767-5769)ATGfs	p.M1923fs	MLL_uc001ptb.2_Frame_Shift_Ins_p.M1926fs	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1923					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GAATGTGCATATGGCTGTGATC	0.406			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								---	---	---							
Unknown	0	broad.mit.edu	37	12	9555195	9555196	+	IGR	INS	-	C	C	rs140281398	by1000genomes	TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr12:9555195_9555196insC								LOC642846 (88511 upstream) : DDX12 (15092 downstream)																							AAGCCCCTCTTCCCCCCCTGGC	0.584													---	---	---							
THSD1P1	374500	broad.mit.edu	37	13	52742289	52742303	+	RNA	DEL	CCCTCTGGTAGTTAT	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr13:52742289_52742303delCCCTCTGGTAGTTAT	uc001vgk.2	-	9		c.2295_2309delATAACTACCAGAGGG			THSD1P1_uc001vgm.1_RNA|THSD1P1_uc010adx.1_RNA|THSD1P1_uc010ady.1_RNA|THSD1P1_uc001vgl.1_RNA					Homo sapiens cDNA FLJ14630 fis, clone NT2RP2000459.												0						AGAGAACTGACCCTCTGGTAGTTATCTTTGGGGGA	0.516													---	---	---							
MDGA2	161357	broad.mit.edu	37	14	47566080	47566080	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr14:47566080delT	uc001wwj.3	-	6	1161	c.965delA	c.(964-966)AAGfs	p.K322fs	MDGA2_uc001wwi.3_Frame_Shift_Del_p.K93fs|MDGA2_uc010ani.2_5'UTR	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	322	Ig-like 3.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						GTTGGTGGACTTTTTTGCAGG	0.393													---	---	---							
RTL1	388015	broad.mit.edu	37	14	101350670	101350671	+	In_Frame_Ins	INS	-	TCT	TCT	rs138109406	by1000genomes	TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr14:101350670_101350671insTCT	uc010txj.1	-	1	514_515	c.455_456insAGA	c.(454-456)GAG>GAAGAG	p.152_152E>EE	MIR432_hsa-mir-432|MI0003133_5'Flank|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	152										pancreas(1)	1						TCTGGTTTTGCTCTTGAGGAGT	0.520													---	---	---							
ABR	29	broad.mit.edu	37	17	914076	914077	+	In_Frame_Ins	INS	-	TCA	TCA			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr17:914076_914077insTCA	uc002fsd.2	-	20	2238_2239	c.2128_2129insTGA	c.(2128-2130)AGT>ATGAGT	p.709_710insM	ABR_uc002fse.2_In_Frame_Ins_p.663_664insM|ABR_uc010vqf.1_In_Frame_Ins_p.160_161insM|ABR_uc010vqg.1_In_Frame_Ins_p.491_492insM|ABR_uc002fsg.2_In_Frame_Ins_p.672_673insM|ABR_uc002fsh.1_In_Frame_Ins_p.317_318insM|ABR_uc002fsf.2_In_Frame_Ins_p.246_247insM	NM_021962	NP_068781	Q12979	ABR_HUMAN	active breakpoint cluster region-related	709_710	Rho-GAP.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity	p.S710delS(1)		upper_aerodigestive_tract(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0228)		GTCCATGTCACTCAGCATCAGC	0.634													---	---	---							
Unknown	0	broad.mit.edu	37	18	49139477	49139477	+	IGR	DEL	A	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr18:49139477delA								MEX3C (415787 upstream) : DCC (727094 downstream)																							AAGAAATAACACttttttttt	0.194													---	---	---							
Unknown	0	broad.mit.edu	37	19	48298226	48298237	+	IGR	DEL	TGCTGGGCGTGG	-	-	rs61719038		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr19:48298226_48298237delTGCTGGGCGTGG								SEPW1 (10287 upstream) : TPRX1 (6263 downstream)																							ATGGAGTCTTTgctgggcgtggtggctcacgc	0.175													---	---	---							
USP34	9736	broad.mit.edu	37	2	61515972	61515973	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:61515972_61515973insA	uc002sbe.2	-	34	4610_4611	c.4588_4589insT	c.(4588-4590)TGCfs	p.C1530fs		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	1530					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			TGCAAACTGGCATATTAACTTC	0.411													---	---	---							
Unknown	0	broad.mit.edu	37	2	97691619	97691620	+	IGR	INS	-	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:97691619_97691620insA								FAM178B (39318 upstream) : FAHD2B (57704 downstream)																							CACTAAAGTACAAAAAAGCCTG	0.312													---	---	---							
SLC25A12	8604	broad.mit.edu	37	2	172644450	172644451	+	Frame_Shift_Ins	INS	-	G	G			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr2:172644450_172644451insG	uc002uhh.2	-	16	1681_1682	c.1592_1593insC	c.(1591-1593)CCAfs	p.P531fs	SLC25A12_uc010fqh.2_Frame_Shift_Ins_p.P424fs	NM_003705	NP_003696	O75746	CMC1_HUMAN	solute carrier family 25, member 12	531	Helical; Name=5; (Potential).|Solcar 3.				gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)		L-Aspartic Acid(DB00128)	GAGATGCAGCTGGGACACCTTT	0.465													---	---	---							
Unknown	0	broad.mit.edu	37	3	187141216	187141216	+	IGR	DEL	A	-	-	rs80024997		TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr3:187141216delA								RTP4 (51849 upstream) : SST (245480 downstream)																							cctgaaaaggaaaaaaaaagg	0.000													---	---	---							
CXCL9	4283	broad.mit.edu	37	4	76928561	76928572	+	In_Frame_Del	DEL	CAAGATGATGCC	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr4:76928561_76928572delCAAGATGATGCC	uc003hjh.1	-	1	70_81	c.31_42delGGCATCATCTTG	c.(31-42)GGCATCATCTTGdel	p.GIIL11del		NM_002416	NP_002407	Q07325	CXCL9_HUMAN	small inducible cytokine B9 precursor	11_14					cell-cell signaling|cellular defense response|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|inflammatory response	extracellular space	chemokine activity			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TCAGAACCAGCAAGATGATGCCCAAGAGGAAA	0.396													---	---	---							
ARHGAP26	23092	broad.mit.edu	37	5	142513667	142513667	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr5:142513667delA	uc011dbj.1	+	19	1869	c.1834delA	c.(1834-1836)AAAfs	p.K612fs	ARHGAP26_uc003lmt.2_Frame_Shift_Del_p.K612fs|ARHGAP26_uc003lmw.2_Frame_Shift_Del_p.K612fs	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	612	Ser-rich.				actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTCAACAGAGAAACGTGAGTC	0.587													---	---	---							
Unknown	0	broad.mit.edu	37	7	57642460	57642461	+	IGR	DEL	CC	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr7:57642460_57642461delCC								ZNF716 (109195 upstream) : None (None downstream)																							CATGAGCAAACCTGGTTCATCA	0.347													---	---	---							
UFSP1	402682	broad.mit.edu	37	7	100486561	100486562	+	Frame_Shift_Del	DEL	CC	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr7:100486561_100486562delCC	uc003uxc.3	-	1	778_779	c.331_332delGG	c.(331-333)GGCfs	p.G111fs	uc010lhm.1_5'Flank	NM_001015072	NP_001015072	Q6NVU6	UFSP1_HUMAN	inactive Ufm1-specific protease 1	111											0	Lung NSC(181;0.041)|all_lung(186;0.0581)					CTCTTGCCAGCCCACCCACCCA	0.584													---	---	---							
JHDM1D	80853	broad.mit.edu	37	7	139810963	139810964	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr7:139810963_139810964insA	uc003vvm.2	-	11	1363_1364	c.1359_1360insT	c.(1357-1362)TTTGAAfs	p.F453fs	JHDM1D_uc010lng.2_RNA	NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	453_454					midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					TCTGGAATTTCAAAGGCATGTT	0.297													---	---	---							
Unknown	0	broad.mit.edu	37	9	88368144	88368144	+	IGR	DEL	A	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chr9:88368144delA								AGTPBP1 (11200 upstream) : NAA35 (187913 downstream)																							aaaaagaaagaaaaaaaaaaT	0.164													---	---	---							
SSX7	280658	broad.mit.edu	37	X	52684344	52684345	+	5'Flank	INS	-	A	A			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:52684344_52684345insA	uc004dqx.1	-							NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					TGTTGCTACTGAAAAAACAGTC	0.421													---	---	---							
SLC9A6	10479	broad.mit.edu	37	X	135098865	135098865	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:135098865delT	uc004ezj.2	+	10	1278	c.1202delT	c.(1201-1203)CTGfs	p.L401fs	SLC9A6_uc004ezk.2_Frame_Shift_Del_p.L433fs	NM_006359	NP_006350	Q92581	SL9A6_HUMAN	solute carrier family 9 (sodium/hydrogen	401	Helical; (Potential).				regulation of pH	early endosome membrane|endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane|recycling endosome membrane	sodium:hydrogen antiporter activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GGGCTGACACTGTTCACCTTC	0.333													---	---	---							
Unknown	0	broad.mit.edu	37	X	150192038	150192038	+	IGR	DEL	G	-	-			TCGA-CV-6952-01A-11D-1912-08	TCGA-CV-6952-11A-01D-1912-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d859062-3655-471e-b3dd-e6ff0671c076	ecf3e7c5-9513-40ce-90c6-64b9bca806f9	g.chrX:150192038delG								HMGB3 (32792 upstream) : GPR50 (153021 downstream)																							TTTTTTTTTTGTCAAATGATC	0.274													---	---	---							
