Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MEGF6	1953	genome.wustl.edu	37	1	3440718	3440718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001409.3	-1	validated	p.R192W	1.000	31	0%	50	42%	1	100%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
NPHP4	261734	genome.wustl.edu	37	1	5987831	5987831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_015102.2	-1	reviewed	p.S440L	0.141	38	0%	66	15.2%	1	0%	benign(0.005)	deleterious(0.04)	neutral(0.349)	NULL
VPS13D	55187	genome.wustl.edu	37	1	12401897	12401897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_015378.2	+1	reviewed	p.T2896M	1.000	83	0%	121	23.1%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27106407	27106409	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_006015.4	+1	reviewed	p.L2009in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ACP6	51205	genome.wustl.edu	37	1	147120131	147120131	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_016361.3	-1	validated	p.P354A	0.998	189	0%	264	33.7%	59	40.6%	probably_damaging(0.998)	tolerated(0.38)	deleterious(0.492)	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like
CFH	3075	genome.wustl.edu	37	1	196712659	196712660	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_000186.3	+1	reviewed	p.R1072fs	0.053:0.037	-	-	-	-	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ZC3H11A	9877	genome.wustl.edu	37	1	203816652	203816652	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_014827.4	+1	validated	p.G461	0.002	68	0%	91	28.6%	44	38.6%	-	-	-	NULL
EPRS	2058	genome.wustl.edu	37	1	220178605	220178605	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_004446.2	-1	reviewed	p.P683R	1.000	195	0%	320	28.7%	29	37.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ribosomal_L25rel
DEGS1	8560	genome.wustl.edu	37	1	224377954	224377954	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_003676.2	+1	reviewed	p.F254fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_FA_desaturase
MYCN	4613	genome.wustl.edu	37	2	16082317	16082317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_005378.4	+1	reviewed	p.P44L	1.000	19	0%	19	42.1%	6	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Myc_N
ERCC3	2071	genome.wustl.edu	37	2	128051272	128051272	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_000122.1	-1	reviewed	p.R17	0.995	94	0%	161	16.1%	13	15.3%	-	-	-	NULL
PLEKHB2	55041	genome.wustl.edu	37	2	132110679	132110679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	ENST00000303908	+1	known	p.S170R	1.000	232	0%	379	27.7%	0	-	unknown(0)	-	-	NULL
LOC440917	440917	genome.wustl.edu	37	2	139045795	139045795	+	RNA	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	XR_041289.2	-1	model	NULL	0.999	167	0%	239	17.6%	0	-	-	-	-	-
SCN2A	6326	genome.wustl.edu	37	2	166166869	166166869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001040142.1	+1	reviewed	p.V245A	1.000	287	0%	314	32.8%	0	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
FASTKD1	79675	genome.wustl.edu	37	2	170416980	170416980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_024622.3	-1	validated	p.M296I	1.000	97	0%	180	32.2%	4	75%	benign(0.073)	tolerated(0.12)	neutral(0.266)	NULL
BOLL	66037	genome.wustl.edu	37	2	198607850	198607850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_197970.2	-1	validated	p.H267N	1.000	108	0%	184	32.1%	0	-	possibly_damaging(0.473)	tolerated(0.39)	neutral(0.172)	NULL
KIF1A	547	genome.wustl.edu	37	2	241712573	241712573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_004321.4	-1	reviewed	p.R380W	1.000	65	0%	85	31.8%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
ARL8B	55207	genome.wustl.edu	37	3	5164271	5164271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_018184.2	+1	validated	p.A41T	1.000	28	0%	23	26.1%	49	48.9%	benign(0.015)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
FGD5	152273	genome.wustl.edu	37	3	14861538	14861538	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_152536.3	+1	validated	p.S320	0.000	44	0%	64	17.2%	7	14.2%	-	-	-	NULL
WDR49	151790	genome.wustl.edu	37	3	167240187	167240187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_178824.3	-1	provisional	p.S545Y	0.018	254	0%	271	28.8%	4	50%	benign(0.261)	tolerated(0.06)	neutral(0.350)	superfamily_WD40 repeat-like
ACAP2	23527	genome.wustl.edu	37	3	195027273	195027290	+	In_Frame_Del	DEL	AGCAATACTGGTCTGAAC	AGCAATACTGGTCTGAAC	-	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	AGCAATACTGGTCTGAAC	AGCAATACTGGTCTGAAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_012287.5	-1	validated	p.VQTSIA356in_frame_del	1.000:1.000:1.000:0.984:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
KCTD8	386617	genome.wustl.edu	37	4	44449696	44449696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_198353.2	-1	validated	p.R282H	1.000	19	0%	23	47.8%	1	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
GSTCD	79807	genome.wustl.edu	37	4	106763287	106763287	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001031720.2	+1	validated	p.L587	1.000	263	0%	369	30.6%	6	16.6%	-	-	-	NULL
ODZ3	55714	genome.wustl.edu	37	4	183245285	183245285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001080477.1	+1	provisional	p.Q38K	1.000	132	0%	236	11.9%	1	0%	possibly_damaging(0.891)	deleterious(0.03)	deleterious(0.715)	HMMPfam_Ten_N
DNAH5	1767	genome.wustl.edu	37	5	13786343	13786343	+	Missense_Mutation	SNP	C	C	T	rs148539877	by1000genomes	TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001369.2	-1	reviewed	p.R2922H	1.000	120	0%	153	36.6%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF52540
SKP2	6502	genome.wustl.edu	37	5	36171752	36171752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_005983.2	+1	reviewed	p.H273R	0.995	153	0.7%	180	30.6%	15	20%	probably_damaging(1)	tolerated(0.43)	deleterious(0.513)	HMMSmart_SM00367,superfamily_RNI-like
PIK3R1	5295	genome.wustl.edu	37	5	67591104	67591104	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_181523.1	+1	reviewed	p.K567fs	1.000	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591107	67591117	+	Frame_Shift_Del	DEL	AACCAGACCTT	AACCAGACCTT	-	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	AACCAGACCTT	AACCAGACCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_181523.1	+1	reviewed	p.K567fs	1.000:0.892:1.000:1.000:0.152:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PCDHA11	56138	genome.wustl.edu	37	5	140250334	140250334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_018902.3	+1	reviewed	p.T549M	0.994	46	0%	73	41.1%	0	-	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH1	5097	genome.wustl.edu	37	5	141243705	141243705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_032420.2	-1	reviewed	p.R731C	0.460	103	0%	178	31.5%	53	47.1%	possibly_damaging(0.771)	tolerated(0.2)	neutral(0.335)	HMMPfam_Cadherin,superfamily_Cadherin
EFCAB9	285588	genome.wustl.edu	37	5	171630289	171630289	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	ENST00000398186	+1	known	p.T178	0.000	202	0%	226	38.5%	0	-	-	-	-	NULL
SLC17A3	10786	genome.wustl.edu	37	6	25868565	25868565	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001098486.1	-1	validated	p.A17	0.224	420	0.2%	318	30.8%	0	-	-	-	-	superfamily_MFS_gen_substrate_transporter
PKHD1	5314	genome.wustl.edu	37	6	51900484	51900484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_138694.3	-1	reviewed	p.E1045K	1.000	64	0%	97	17.5%	0	-	benign(0.418)	tolerated(0.37)	neutral(0.154)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
COL19A1	1310	genome.wustl.edu	37	6	70875842	70875842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001858.4	+1	reviewed	p.G804R	0.998	82	0%	105	36.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Collagen
CGA	1081	genome.wustl.edu	37	6	87795511	87795511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_000735.2	-1	reviewed	p.A105V	0.464	151	0.7%	254	28%	0	-	benign(0.019)	deleterious(0)	neutral(0.446)	HMMPfam_Hormone_6,HMMSmart_SM00067,PatternScan_GLYCO_HORMONE_ALPHA_2,superfamily_Cystine-knot cytokines
SAMD3	154075	genome.wustl.edu	37	6	130466485	130466485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001017373.2	-1	validated	p.Q426H	1.000	135	0%	172	33.7%	2	50%	benign(0.006)	deleterious(0.05)	neutral(0.345)	NULL
NOD1	10392	genome.wustl.edu	37	7	30475652	30475652	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_006092.2	-1	reviewed	p.A861	0.000	107	0%	200	15.5%	7	0%	-	-	-	superfamily_SSF52047
EGFR	1956	genome.wustl.edu	37	7	55266458	55266458	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_005228.3	+1	reviewed	p.G917A	0.998	124	0%	197	33%	12	33.3%	benign(0.414)	deleterious(0.05)	deleterious(0.479)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
RUNDC3B	154661	genome.wustl.edu	37	7	87445521	87445521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_138290.2	+1	validated	p.P407L	1.000	193	0%	250	28.8%	1	0%	possibly_damaging(0.452)	tolerated(0.27)	neutral(0.181)	NULL
MUC3A	4584	genome.wustl.edu	37	7	100550032	100550033	+	In_Frame_Ins	INS	-	-	CCT	rs111723000		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	XM_001725354.2	+1	model	p.208in_frame_insS	0.165:0.003	-	-	-	-	-	-	-	-	-	NULL
SNTG1	54212	genome.wustl.edu	37	8	51362240	51362240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_018967.2	+1	reviewed	p.H78N	1.000	260	0%	366	31.7%	0	-	possibly_damaging(0.473)	tolerated(0.1)	neutral(0.443)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
RIMS2	9699	genome.wustl.edu	37	8	105261015	105261015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001100117.1	+1	validated	p.R1188H	1.000	156	0%	185	30.3%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
CSMD3	114788	genome.wustl.edu	37	8	113694830	113694830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_198123.1	-1	validated	p.P840S	1.000	165	0%	242	30.2%	0	-	benign(0.001)	deleterious(0.05)	neutral(0.345)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SMC5	23137	genome.wustl.edu	37	9	72929751	72929751	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_015110.3	+1	validated	p.K558*	0.856	143	0%	179	30.2%	4	0%	-	-	-	HMMPfam_SMC_N,superfamily_SSF52540
TBC1D2	55357	genome.wustl.edu	37	9	100983173	100983173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_018421.3	-1	validated	p.R439H	0.000	92	0%	142	30.3%	28	50%	benign(0.068)	tolerated(0.11)	neutral(0.276)	NULL
SEC16A	9919	genome.wustl.edu	37	9	139357961	139357961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_014866.1	-1	validated	p.A1534V	1.000	174	0%	278	31.7%	20	0%	possibly_damaging(0.892)	deleterious(0.01)	deleterious(0.757)	NULL
PTEN	5728	genome.wustl.edu	37	10	89685305	89685305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	ENST00000371953	+1	known	p.I67T	1.000	191	0%	187	38%	49	51%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	ENST00000371953	+1	known	p.R130G	1.000	238	0%	313	35.8%	47	34%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121913292		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	ENST00000371953	+1	known	p.R130Q	1.000	235	0%	307	33.2%	48	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
CTBP2	1488	genome.wustl.edu	37	10	126715846	126715846	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_022802.2	-1	reviewed	p.A161	0.000	16	0%	36	50%	0	-	-	-	-	NULL
OR5P3	120066	genome.wustl.edu	37	11	7847289	7847289	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_153445.1	-1	provisional	p.V77	0.629	94	1.1%	152	35.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
DPP3	10072	genome.wustl.edu	37	11	66249729	66249729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_005700.3	+1	reviewed	p.R20C	0.978	26	0%	62	37.1%	42	40.4%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
PRDM10	56980	genome.wustl.edu	37	11	129772222	129772222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_020228.2	-1	reviewed	p.I1157V	1.000	355	0.3%	540	28%	3	66.6%	benign(0)	deleterious(0)	neutral(0.445)	NULL
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	byCluster	TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_033360.2	-1	reviewed	p.G12V	1.000	212	0%	341	30.2%	6	33.3%	benign(0.048)	deleterious(0)	neutral(0.448)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RARG	5916	genome.wustl.edu	37	12	53609209	53609209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_000966.4	-1	validated	p.R115C	1.000	116	0%	199	12.6%	32	21.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
AGAP2	116986	genome.wustl.edu	37	12	58129157	58129157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001122772.1	-1	validated	p.R408S	1.000	71	0%	104	24%	2	0%	possibly_damaging(0.929)	deleterious(0.01)	deleterious(0.782)	HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Miro,superfamily_P-loop containing nucleoside triphosphate hydrolases
CPSF6	11052	genome.wustl.edu	37	12	69656295	69656306	+	In_Frame_Del	DEL	CGTGACCGAGAG	CGTGACCGAGAG	-	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	CGTGACCGAGAG	CGTGACCGAGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_007007.2	+1	validated	p.ERDR541in_frame_del	1.000:1.000:0.028:0.998:1.000:1.000:1.000:1.000:0.989:1.000:0.998:0.033	-	-	-	-	-	-	-	-	-	NULL
STAB2	55576	genome.wustl.edu	37	12	104015859	104015859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_017564.9	+1	reviewed	p.D153N	0.981	276	0%	421	30.6%	0	-	possibly_damaging(0.608)	tolerated(0.17)	neutral(0.269)	NULL
POLR3B	55703	genome.wustl.edu	37	12	106890645	106890645	+	Missense_Mutation	SNP	G	G	T	rs117293015	by1000genomes	TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_018082.5	+1	validated	p.R978L	1.000	191	0%	218	33.9%	13	7.6%	benign(0.124)	tolerated(0.12)	neutral(0.271)	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
LPAR6	10161	genome.wustl.edu	37	13	48986290	48986290	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_005767.5	-1	reviewed	p.K90N	1.000	91	0%	122	35.2%	27	37%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_1,superfamily_SSF81321
CHD8	57680	genome.wustl.edu	37	14	21860732	21860732	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_020920.3	-1	reviewed	p.A1956	0.998	124	0%	186	11.8%	53	11.3%	-	-	-	NULL
NRXN3	9369	genome.wustl.edu	37	14	79933651	79933651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_004796.4	+1	reviewed	p.R744H	1.000	75	0%	96	25%	4	75%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_LamG,superfamily_ConA_like_lec_gl
KCNK10	54207	genome.wustl.edu	37	14	88654430	88654430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_138317.2	-1	reviewed	p.R298W	1.000	153	0%	247	35.2%	0	-	probably_damaging(0.965)	deleterious(0.04)	deleterious(0.756)	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
BRF1	2972	genome.wustl.edu	37	14	105684104	105684104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001519.2	-1	reviewed	p.Q517K	1.000	43	0%	75	22.7%	22	45.4%	benign(0.01)	tolerated(0.94)	neutral(0.001)	HMMPfam_BRF1
SRRM2	23524	genome.wustl.edu	37	16	2818850	2818850	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	ENST00000382300	+1	known	p.S123	1.000	11	0%	15	46.7%	29	34.4%	-	-	-	NULL
ABCC6	368	genome.wustl.edu	37	16	16257016	16257016	+	Missense_Mutation	SNP	G	G	A	rs63749794		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001171.5	-1	reviewed	p.R1114C	1.000	49	0%	58	41.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
RBL2	5934	genome.wustl.edu	37	16	53524069	53524069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_005611.3	+1	validated	p.R1093C	0.996	85	0%	173	19.1%	33	24.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRPF8	10594	genome.wustl.edu	37	17	1561557	1561557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_006445.3	-1	reviewed	p.R1832H	1.000	134	0%	250	35.6%	105	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SDK2	54549	genome.wustl.edu	37	17	71443828	71443828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001144952.1	-1	provisional	p.R180H	1.000	135	0%	181	22.7%	0	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
LRRC30	339291	genome.wustl.edu	37	18	7231739	7231739	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001105581.1	+1	provisional	p.I201	0.971	71	0%	73	41.1%	0	-	-	-	-	superfamily_SSF52058
TYK2	7297	genome.wustl.edu	37	19	10464803	10464803	+	Silent	SNP	G	G	C	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_003331.4	-1	reviewed	p.R941	0.000	40	0%	65	30.8%	53	37.7%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
HNRNPL	3191	genome.wustl.edu	37	19	39338057	39338057	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001533.2	-1	reviewed	p.P95	0.749	99	0%	167	24.6%	89	33.7%	-	-	-	NULL
CEP250	11190	genome.wustl.edu	37	20	34067178	34067178	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_007186.3	+1	reviewed	p.A739	0.277	52	0%	83	31.3%	9	66.6%	-	-	-	NULL
SLC17A9	63910	genome.wustl.edu	37	20	61594022	61594022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_022082.3	+1	validated	p.G182S	1.000	109	0%	181	30.9%	0	-	benign(0.016)	deleterious(0.01)	neutral(0.406)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ADAMTS5	11096	genome.wustl.edu	37	21	28327086	28327086	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_007038.3	-1	reviewed	p.H403	0.529	91	0%	109	37.6%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
SCAF4	57466	genome.wustl.edu	37	21	33044421	33044421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_020706.2	-1	reviewed	p.H912R	0.807	58	0%	86	31.4%	21	38%	unknown(0)	deleterious(0.05)	-	NULL
ENSG00000225677	0	genome.wustl.edu	37	22	50655925	50655925	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	ENST00000450166	+1	known	p.S21C	0.975	8	0.000	9	0.444	36	41.6%	-	-	-	NULL
ENSG00000210082	0	genome.wustl.edu	37	MT	3107	3107	+	RNA	DEL	A	A	-	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	ENST00000387347	+1	known	NULL	NULL	-	-	-	-	-	-	-	-	-	-
ZMYM3	9203	genome.wustl.edu	37	X	70468156	70468156	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_005096.3	-1	reviewed	p.V611L	1.000	86	0%	140	30.7%	6	0%	benign(0.063)	tolerated(0.15)	neutral(0.245)	HMMPfam_zf-FCS,HMMSmart_SM00746
RBMXL3	139804	genome.wustl.edu	37	X	114425588	114425588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_001145346.1	+1	validated	p.D528E	0.997	38	0%	58	29.3%	0	-	possibly_damaging(0.507)	deleterious(0)	deleterious(0.614)	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140993431	140993431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_005462.4	+1	reviewed	p.Q81K	0.990	128	0%	148	33.1%	0	-	unknown(0)	deleterious(0.01)	-	NULL
MAGEA3	4102	genome.wustl.edu	37	X	151935794	151935794	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15W-01A-11D-A122-09	TCGA-D1-A15W-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b2198f64-9c6b-4ad8-95a3-b16fac3e9ffa	af03d1bc-4b0b-45b5-b6b3-039d0321e792	NM_005362.3	-1	reviewed	p.R125*	0.001	259	0%	326	36.2%	0	-	-	-	-	HMMPfam_MAGE
