Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ATAD3B	83858	genome.wustl.edu	37	1	1414439	1414439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_031921.4	+1	provisional	p.Y132C	1.000	109	0%	124	29%	20	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC645359	645359	genome.wustl.edu	37	1	13219439	13219439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	XM_928401.3	-1	model	p.R63W	0.003	335	0.3%	314	16.9%	0	-	possibly_damaging(0.552)	deleterious(0.01)	deleterious(0.594)	superfamily_RNI-like
GRIK3	2899	genome.wustl.edu	37	1	37270610	37270610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_000831.3	-1	reviewed	p.R848H	1.000	42	0%	47	31.9%	1	0%	benign(0.138)	deleterious(0.02)	neutral(0.395)	superfamily_SSF55620
SZT2	23334	genome.wustl.edu	37	1	43903178	43903178	+	Silent	SNP	C	C	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_015284.2	+1	predicted	p.R1198	0.978	144	0%	186	43%	5	20%	-	-	-	NULL
PGLYRP3	114771	genome.wustl.edu	37	1	153279729	153279729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_052891.1	-1	provisional	p.V24I	0.001	46	0%	60	35%	0	-	benign(0.113)	tolerated(0.33)	neutral(0.033)	superfamily_Amidase_2,HMMSmart_PGRP
ITLN1	55600	genome.wustl.edu	37	1	160849172	160849172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_017625.2	-1	validated	p.V240L	0.993	157	0%	200	43%	1	0%	benign(0.199)	deleterious(0.01)	neutral(0.425)	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200822560	200822560	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_203459.1	+1	validated	p.R1254*	1.000	315	0%	285	38.9%	4	50%	-	-	-	NULL
SMYD2	56950	genome.wustl.edu	37	1	214501061	214501062	+	In_Frame_Ins	INS	-	-	GAG	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_020197.2	+1	validated	p.235in_frame_insE	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SET,superfamily_SSF82199
ESRRG	2104	genome.wustl.edu	37	1	216850596	216850596	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001438.2	-1	validated	p.R98	1.000	270	0%	295	46.8%	1	0%	-	-	-	NULL
CAPN2	824	genome.wustl.edu	37	1	223905507	223905507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001748.4	+1	reviewed	p.R94H	1.000	109	0%	105	37.1%	34	35.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
C2orf55	343990	genome.wustl.edu	37	2	99439464	99439464	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_207362.2	-1	validated	p.A424	0.000	10	0%	23	30.4%	3	0%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179466064	179466064	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	ENST00000356127	-1	known	p.R15986*	1.000	293	0%	149	43.6%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
CTNNB1	1499	genome.wustl.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	G	rs121913403	byCluster	TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001098209.1	+1	reviewed	p.S37C	1.000	135	0%	123	39%	329	49.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CELSR3	1951	genome.wustl.edu	37	3	48698404	48698404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001407.2	-1	reviewed	p.R555H	0.989	27	0%	26	53.8%	2	100%	probably_damaging(0.994)	tolerated(0.6)	neutral(0.457)	HMMPfam_Cadherin,superfamily_Cadherin-like
MORC1	27136	genome.wustl.edu	37	3	108778714	108778714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_014429.3	-1	reviewed	p.V324I	0.242	404	0%	351	41%	0	-	benign(0.026)	tolerated(0.17)	neutral(0.060)	NULL
KALRN	8997	genome.wustl.edu	37	3	124103814	124103814	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	ENST00000354186	+1	known	p.S607L	0.981	86	0%	114	49.1%	3	33.3%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
CPB1	1360	genome.wustl.edu	37	3	148545857	148545857	+	Missense_Mutation	SNP	C	C	T	rs146537927	by1000genomes	TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001871.2	+1	reviewed	p.T47M	0.091	253	0%	236	41.5%	0	-	unknown(0)	deleterious(0.01)	-	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
CCDC39	339829	genome.wustl.edu	37	3	180349292	180349294	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_181426.1	-1	validated	p.G654in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
HTR3C	170572	genome.wustl.edu	37	3	183777681	183777681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_130770.2	+1	reviewed	p.Y331H	0.983	262	0%	241	20.3%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
SLC4A4	8671	genome.wustl.edu	37	4	72205184	72205184	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001134742.1	+1	reviewed	p.A117	0.044	75	0%	95	47.4%	0	-	-	-	-	superfamily_PTrfase/Anion_transptr
ANKRD50	57182	genome.wustl.edu	37	4	125593347	125593347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_020337.2	-1	validated	p.R362Q	1.000	271	0%	161	39.8%	3	33.3%	benign(0.034)	tolerated(0.32)	neutral(0.026)	NULL
GYPA	2993	genome.wustl.edu	37	4	145032555	145032555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_002099.5	-1	reviewed	p.D149N	0.008	500	0%	214	42.1%	0	-	possibly_damaging(0.465)	tolerated(0.41)	neutral(0.168)	NULL
TLR2	7097	genome.wustl.edu	37	4	154625801	154625801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_003264.3	+1	reviewed	p.S581L	0.062	72	0%	68	52.9%	11	27.2%	benign(0.394)	deleterious(0)	deleterious(0.571)	HMMPfam_LRRCT,HMMSmart_LRRCT
ZSWIM6	57688	genome.wustl.edu	37	5	60768550	60768550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_020928.1	+1	provisional	p.S240W	1.000	119	0%	112	46.4%	8	37.5%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
PPP2R2B	5521	genome.wustl.edu	37	5	145979959	145979959	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_181676.2	-1	reviewed	p.S288	0.988	333	0%	336	39%	3	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
SH3TC2	79628	genome.wustl.edu	37	5	148407038	148407038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_024577.3	-1	reviewed	p.R753W	0.000	57	0%	69	50.7%	0	-	benign(0)	tolerated(0.05)	neutral(0.345)	superfamily_TPR-like
ODZ2	57451	genome.wustl.edu	37	5	167689422	167689422	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001122679.1	+1	inferred	p.E2635D	1.000	36	0%	36	27.8%	0	-	benign(0.018)	tolerated(0.12)	neutral(0.261)	NULL
NSD1	64324	genome.wustl.edu	37	5	176675287	176675287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_022455.4	+1	reviewed	p.R1535C	1.000	246	0%	272	46.3%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DSP	1832	genome.wustl.edu	37	6	7542148	7542149	+	Frame_Shift_Ins	INS	-	-	A	rs17133512	byCluster;by1000genomes	TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_004415.2	+1	reviewed	p.M0fs	0.955:0.997	-	-	-	-	-	-	-	-	-	NULL
MICA	100507436	genome.wustl.edu	37	6	31379976	31379976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	ENST00000376219	+1	known	p.N289I	0.000	140	0%	183	54.1%	48	91.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
CHRM2	1129	genome.wustl.edu	37	7	136699989	136699989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_000739.2	+1	reviewed	p.T126K	1.000	164	0%	90	37.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ATG9B	285973	genome.wustl.edu	37	7	150714170	150714170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_173681.5	-1	validated	p.R748C	0.285	20	0%	18	50%	0	-	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
BMP1	649	genome.wustl.edu	37	8	22049595	22049595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_006129.4	+1	reviewed	p.R371C	1.000	161	0%	211	41.2%	40	47.5%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
RIMS2	9699	genome.wustl.edu	37	8	105026837	105026837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001100117.1	+1	validated	p.D1110N	1.000	158	0%	85	38.8%	0	-	benign(0.011)	tolerated(0.23)	neutral(0.042)	NULL
CSMD3	114788	genome.wustl.edu	37	8	113651072	113651072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_198123.1	-1	validated	p.G1127C	1.000	237	0%	147	44.2%	0	-	probably_damaging(0.974)	deleterious(0.03)	deleterious(0.780)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
WDR67	93594	genome.wustl.edu	37	8	124105858	124105858	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_145647.3	+1	validated	p.I183fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1
PALM2-AKAP2	445815	genome.wustl.edu	37	9	112899488	112899488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_007203.4	+1	validated	p.S555F	0.893	39	0%	45	53.3%	2	0%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
NUP214	8021	genome.wustl.edu	37	9	134019757	134019757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_005085.2	+1	reviewed	p.S462L	0.000	193	0%	207	40.6%	10	30%	benign(0.202)	tolerated(0.15)	neutral(0.261)	NULL
DBH	1621	genome.wustl.edu	37	9	136513018	136513018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_000787.3	+1	reviewed	p.R359C	0.988	96	0%	168	39.9%	12	50%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	superfamily_PHM_PNGase_F,HMMPfam_Cu2_monoox_C
ANAPC2	29882	genome.wustl.edu	37	9	140070239	140070239	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_013366.3	-1	reviewed	p.D647	0.930	39	0%	47	44.7%	47	46.8%	-	-	-	HMMPfam_Cullin,HMMSmart_SM00182,superfamily_Cullin homology domain
GAD2	2572	genome.wustl.edu	37	10	26562595	26562595	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_000818.2	+1	reviewed	p.R375*	1.000	419	0%	585	29.4%	0	-	-	-	-	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
SYNPO2L	79933	genome.wustl.edu	37	10	75406822	75406822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001114133.1	-1	validated	p.C863Y	1.000	60	0%	97	36.1%	0	-	possibly_damaging(0.711)	deleterious(0.02)	deleterious(0.640)	NULL
PTEN	5728	genome.wustl.edu	37	10	89711964	89711965	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	ENST00000371953	+1	known	p.H195fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PTEN	5728	genome.wustl.edu	37	10	89717753	89717754	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	ENST00000371953	+1	known	p.K260fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
FGFR2	2263	genome.wustl.edu	37	10	123279677	123279677	+	Missense_Mutation	SNP	G	G	C	rs79184941	byCluster	TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_022970.3	-1	reviewed	p.S252W	1.000	92	0%	182	65.4%	28	53.5%	probably_damaging(0.963)	tolerated(0.07)	deleterious(0.725)	NULL
DCHS1	8642	genome.wustl.edu	37	11	6642989	6642989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	ENST00000442153	-1	known	p.P119L	1.000	33	0%	58	39.7%	13	7.6%	unknown(0)	-	-	NULL
KCNJ11	3767	genome.wustl.edu	37	11	17409628	17409628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_000525.3	-1	reviewed	p.R4H	1.000	28	0%	32	37.5%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LIN7C	55327	genome.wustl.edu	37	11	27523058	27523058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_018362.3	-1	validated	p.A71V	1.000	234	0%	188	47.9%	14	28.5%	possibly_damaging(0.858)	deleterious(0.01)	deleterious(0.737)	NULL
OR8K3	219473	genome.wustl.edu	37	11	56085952	56085952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001005202.1	+1	provisional	p.T57N	0.165	304	0%	225	49.8%	0	-	possibly_damaging(0.613)	deleterious(0.02)	deleterious(0.596)	HMMPfam_7tm_1,superfamily_SSF81321
OR4D10	390197	genome.wustl.edu	37	11	59245193	59245193	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001004705.1	+1	provisional	p.C97	0.012	193	0%	226	40.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2AT4	341152	genome.wustl.edu	37	11	74799872	74799872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001005285.1	-1	provisional	p.T296M	0.776	238	0%	266	41.4%	0	-	benign(0.047)	deleterious(0.01)	neutral(0.409)	superfamily_Family A G protein-coupled receptor-like
FAT3	120114	genome.wustl.edu	37	11	92087437	92087437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001008781.2	+1	validated	p.R720I	1.000	215	0%	126	46.8%	0	-	possibly_damaging(0.804)	tolerated(0.5)	neutral(0.312)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92600265	92600265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001008781.2	+1	validated	p.A4006V	1.000	13	0%	16	62.5%	0	-	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	superfamily_Concanavalin A-like lectins/glucanases
SRPR	6734	genome.wustl.edu	37	11	126135714	126135714	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_003139.3	-1	reviewed	p.K352	1.000	220	0%	271	45%	114	35.9%	-	-	-	superfamily_SRP54
SLC2A14	144195	genome.wustl.edu	37	12	7970450	7970450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_153449.2	-1	provisional	p.G441R	1.000	85	0%	106	47.2%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
BLOC1S1	2647	genome.wustl.edu	37	12	56110759	56110759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001487.2	+1	validated	p.T35K	1.000	420	0%	439	43.7%	267	44.1%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_GCN5L1
RBM25	58517	genome.wustl.edu	37	14	73576169	73576169	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_021239.2	+1	validated	p.G554A	1.000	115	0%	154	44.2%	33	39.3%	unknown(0)	tolerated(0.34)	-	NULL
DICER1	23405	genome.wustl.edu	37	14	95557638	95557638	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_030621.3	-1	reviewed	p.D1810A	1.000	400	0%	320	43.1%	18	77.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,superfamily_RNase_III
DICER1	23405	genome.wustl.edu	37	14	95582926	95582926	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_030621.3	-1	reviewed	p.L539fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
DIO3	1735	genome.wustl.edu	37	14	102028220	102028220	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001362.3	+1	reviewed	p.A103	0.943	18	0%	25	48%	0	-	-	-	-	HMMPfam_T4_deiodinase
WDR90	197335	genome.wustl.edu	37	16	705608	705608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_145294.4	+1	provisional	p.I585T	0.808	22	0%	24	37.5%	10	60%	possibly_damaging(0.647)	deleterious(0.01)	deleterious(0.633)	superfamily_WD40 repeat-like
RNF151	146310	genome.wustl.edu	37	16	2018741	2018741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_174903.4	+1	provisional	p.R185C	0.002	6	0.000	7	0.571	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	superfamily_Traf_like
ACAP1	9744	genome.wustl.edu	37	17	7240105	7240105	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_014716.3	+1	validated	p.R18*	1.000	106	0%	148	41.2%	0	-	-	-	-	NULL
SMCR7	125170	genome.wustl.edu	37	17	18167935	18167935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_148886.1	+1	reviewed	p.L419F	1.000	27	0%	44	54.5%	10	40%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SMCR8	140775	genome.wustl.edu	37	17	18219250	18219250	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_144775.2	+1	validated	p.S49	0.404	244	0.8%	296	50.7%	7	71.4%	-	-	-	NULL
SPACA3	124912	genome.wustl.edu	37	17	31323914	31323914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_173847.3	+1	provisional	p.E133K	0.061	110	0%	158	44.9%	0	-	possibly_damaging(0.538)	tolerated(0.31)	neutral(0.209)	HMMPfam_Lys,HMMSmart_SM00263,superfamily_Lysozyme-like
SOCS7	30837	genome.wustl.edu	37	17	36521233	36521233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_014598.1	+1	validated	p.P334L	1.000	403	0.2%	416	41.6%	0	-	benign(0.425)	deleterious(0.01)	deleterious(0.544)	NULL
PGAP3	93210	genome.wustl.edu	37	17	37841004	37841004	+	Splice_Site	DEL	T	T	-	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_033419.3	-1	validated	e3-2	1.000	-	-	-	-	-	-	-	-	-	-
KRT23	25984	genome.wustl.edu	37	17	39081644	39081644	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_015515.3	-1	reviewed	p.I368	0.986	348	0%	458	41.9%	459	56.6%	-	-	-	HMMPfam_Filament,PatternScan_IF
CALCOCO2	10241	genome.wustl.edu	37	17	46933547	46933547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_005831.3	+1	reviewed	p.D336N	0.994	192	0%	197	54.8%	41	48.7%	benign(0.071)	tolerated(0.06)	neutral(0.328)	HMMPfam_CALCOCO1
EPB41L3	23136	genome.wustl.edu	37	18	5395621	5395621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_012307.2	-1	provisional	p.T1020M	1.000	319	0%	423	40.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_4_1_CTD
LOC100287130	100287130	genome.wustl.edu	37	18	47808949	47808949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	XM_002343599.1	+1	model	p.S50Y	0.001	66	0%	84	44%	112	45.5%	-	-	-	NULL
C3	718	genome.wustl.edu	37	19	6696616	6696616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_000064.2	-1	reviewed	p.R951C	0.000	158	0%	168	43.5%	55	27.2%	possibly_damaging(0.812)	deleterious(0.03)	deleterious(0.670)	NULL
SMARCA4	6597	genome.wustl.edu	37	19	11144049	11144051	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001128849.1	+1	reviewed	p.E1212in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF52540
TPM4	7171	genome.wustl.edu	37	19	16178474	16178474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_001145160.1	+1	reviewed	p.D14Y	1.000	127	0%	154	35.1%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
AXL	558	genome.wustl.edu	37	19	41726597	41726597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_021913.3	+1	reviewed	p.R48W	0.949	80	1.3%	112	51.8%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
GNG8	94235	genome.wustl.edu	37	19	47137389	47137389	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_033258.1	-1	provisional	p.V53fs	0.968	-	-	-	-	-	-	-	-	-	HMMPfam_G-gamma,HMMSmart_GGL,superfamily_G-protein_gamma-like
NLRP11	204801	genome.wustl.edu	37	19	56321304	56321304	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_145007.3	-1	validated	p.L224	0.009	220	0%	229	41.5%	0	-	-	-	-	HMMPfam_NACHT
A1BG	1	genome.wustl.edu	37	19	58862932	58862932	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_130786.3	-1	reviewed	p.R245	0.000	37	0%	38	50%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ADRA1D	146	genome.wustl.edu	37	20	4228603	4228603	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_000678.3	-1	reviewed	p.S334	0.179	13	0%	47	40.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PYGB	5834	genome.wustl.edu	37	20	25261005	25261005	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_002862.3	+1	reviewed	p.R399P	0.995	88	0%	107	15.9%	35	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Phosphorylase,superfamily_SSF53756
C20orf112	140688	genome.wustl.edu	37	20	31035542	31035542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_080616.3	-1	validated	p.T390A	1.000	61	0%	65	44.6%	15	53.3%	probably_damaging(0.981)	tolerated(0.39)	neutral(0.442)	NULL
BPIFB2	80341	genome.wustl.edu	37	20	31600608	31600609	+	Frame_Shift_Ins	INS	-	-	GATCC	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_025227.1	+1	reviewed	p.I72fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI
BIRC7	79444	genome.wustl.edu	37	20	61870903	61870903	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_139317.1	+1	reviewed	p.L281	0.994	23	0%	42	57.1%	0	-	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4
ZC3H7B	23264	genome.wustl.edu	37	22	41734256	41734256	+	Silent	SNP	T	T	G	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	ENST00000396532	+1	known	p.G117	0.000	25	0%	25	20%	1	0%	-	-	-	NULL
CFP	5199	genome.wustl.edu	37	X	47487912	47487913	+	Frame_Shift_Ins	INS	-	-	G	rs11436787	byCluster	TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	ENST00000480317	-1	known	p.S89fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
PSMD10	5716	genome.wustl.edu	37	X	107328209	107328209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_002814.2	-1	reviewed	p.G226C	0.993	262	0%	232	39.7%	34	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP26	83844	genome.wustl.edu	37	X	132162229	132162229	+	Missense_Mutation	SNP	C	C	T	rs192465138	by1000genomes	TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_031907.1	-1	reviewed	p.R7H	0.000	132	0%	56	37.5%	0	-	benign(0)	tolerated(1)	-	NULL
F9	2158	genome.wustl.edu	37	X	138619303	138619303	+	Nonsense_Mutation	SNP	C	C	T	rs137852227		TCGA-D1-A15Z-01A-11D-A122-09	TCGA-D1-A15Z-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7f2378fa-38c2-4261-8131-93d3438f2d0d	0068cc74-c84d-4ca2-b1af-c4400c9454f7	NM_000133.3	+1	reviewed	p.R75*	0.985	208	0%	97	45.4%	0	-	-	-	-	HMMPfam_Gla,HMMSmart_SM00069,PatternScan_GLA_1,superfamily_GLA-domain
