Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACE	1636	genome.wustl.edu	37	17	61558968	61558968	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	17	61558968	61558968	C	A	SNP	ACE	NM_000789.2	human	genbank	58_37c	+1	reviewed	missense	c.987	p.F329L	1.000	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Peptidase_M2,PatternScan_ZINC_PROTEASE,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ALPP	250	genome.wustl.edu	37	2	233244601	233244601	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	2	233244601	233244601	G	T	SNP	ALPP	NM_001632.3	human	genbank	58_37c	+1	reviewed	silent	c.612	p.G204	0.999	HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core	HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core,PatternScan_ALKALINE_PHOSPHATASE	-	no_errors
AMBP	259	genome.wustl.edu	37	9	116840414	116840414	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	9	116840414	116840414	G	C	SNP	AMBP	NM_001633.3	human	genbank	58_37c	-1	reviewed	missense	c.76	p.P26A	0.001	superfamily_Calycin	HMMPfam_Lipocalin,HMMPfam_Kunitz_BPTI,HMMSmart_KU,PatternScan_BPTI_KUNITZ_1,superfamily_Prot_inh_Kunz-m,PatternScan_LIPOCALIN,superfamily_Calycin	-	no_errors
APOLD1	81575	genome.wustl.edu	37	12	12940449	12940449	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	12	12940449	12940449	G	A	SNP	APOLD1	NM_001130415.1	human	genbank	58_37c	+1	validated	missense	c.703	p.E235K	0.997	NULL	NULL	-	no_errors
ASH1L	55870	genome.wustl.edu	37	1	155451186	155451186	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	1	155451186	155451186	T	G	SNP	ASH1L	NM_018489.2	human	genbank	58_37c	-1	reviewed	missense	c.1475	p.K492T	1.000	NULL	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_SET,HMMSmart_SM00317,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMSmart_SM00570,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00384,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
ATP10B	23120	genome.wustl.edu	37	5	160047807	160047807	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	5	160047807	160047807	C	T	SNP	ATP10B	NM_025153.2	human	genbank	58_37c	-1	validated	missense	c.1963	p.V655M	0.000	superfamily_HAD-like	HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
C17orf107	0	genome.wustl.edu	37	17	4803317	4803317	+	Silent	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	17	4803317	4803317	G	A	SNP	C17orf107	NM_001145536.1	human	genbank	58_37c	+1	predicted	silent	c.153	p.L51	0.006	NULL	NULL	-	no_errors
C1orf43	25912	genome.wustl.edu	37	1	154185071	154185071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	1	154185071	154185071	G	A	SNP	C1orf43	NM_001098616.1	human	genbank	58_37c	-1	validated	missense	c.370	p.P124S	1.000	HMMPfam_NICE-3	HMMPfam_NICE-3	-	no_errors
C2orf51	200523	genome.wustl.edu	37	2	88828895	88828901	+	Frame_Shift_Del	DEL	GCTACCT	GCTACCT	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	GCTACCT	GCTACCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	2	88828895	88828901	GCTACCT	-	DEL	C2orf51	NM_152670.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.446_452	p.L151fs	1.000:1.000:0.995:0.975:0.689:0.042:0.042	NULL	NULL	-	no_errors
CLK3	1198	genome.wustl.edu	37	15	74914837	74914837	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	15	74914837	74914837	G	A	SNP	CLK3	NM_001130028.1	human	genbank	58_37c	+1	reviewed	missense	c.913	p.E305K	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
COL16A1	1307	genome.wustl.edu	37	1	32122636	32122636	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	1	32122636	32122636	C	T	SNP	COL16A1	NM_001856.3	human	genbank	58_37c	-1	reviewed	missense	c.4054	p.E1352K	1.000	HMMPfam_Collagen	HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
CRTAC1	55118	genome.wustl.edu	37	10	99655714	99655714	+	Silent	SNP	G	A	A	rs34404296	byCluster;byFrequency;by1000genomes	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	10	99655714	99655714	G	A	SNP	CRTAC1	NM_018058.4	human	genbank	58_37c	-1	validated	silent	c.1245	p.D415	0.999	superfamily_Integrin alpha N-terminal domain	HMMSmart_SM00179,HMMPfam_UnbV_ASPIC,HMMPfam_EGF_CA,HMMPfam_FG-GAP,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Integrin alpha N-terminal domain	-	no_errors
CSPG4	1464	genome.wustl.edu	37	15	75980799	75980823	+	Frame_Shift_Del	DEL	GACTGCCTCTGAGGCACGTGCTGTG	GACTGCCTCTGAGGCACGTGCTGTG	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	GACTGCCTCTGAGGCACGTGCTGTG	GACTGCCTCTGAGGCACGTGCTGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	15	75980799	75980823	GACTGCCTCTGAGGCACGTGCTGTG	-	DEL	CSPG4	NM_001897.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.2607_2583	p.T862fs	0.000:0.000:0.000:0.000:0.018:0.039:0.084:0.063:0.029:0.000:0.003:0.002:0.003:0.003:0.003:0.005:0.900:0.873:0.000:0.000:0.000:0.000:0.972:0.986:0.987	NULL	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors
CUBN	8029	genome.wustl.edu	37	10	17126407	17126407	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	10	17126407	17126407	G	A	SNP	CUBN	NM_001081.3	human	genbank	58_37c	-1	reviewed	missense	c.2164	p.P722S	0.998	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
CYB5A	1528	genome.wustl.edu	37	18	71959066	71959066	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	18	71959066	71959066	C	T	SNP	CYB5A	NM_148923.2	human	genbank	58_37c	-1	validated	silent	c.45	p.E15	0.955	HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain	HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain,PatternScan_CYTOCHROME_B5_1	-	no_errors
DCC	1630	genome.wustl.edu	37	18	50278518	50278518	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	18	50278518	50278518	C	T	SNP	DCC	NM_005215.3	human	genbank	58_37c	+1	reviewed	silent	c.186	p.S62	0.874	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_Neogenin_C,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
DDX17	10521	genome.wustl.edu	37	22	38888051	38888051	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	22	38888051	38888051	C	G	SNP	DDX17	ENST00000415456	human	ensembl	58_37c	-1	known	missense	c.1220	p.R407T	1.000	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases	PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DSE	29940	genome.wustl.edu	37	6	116757537	116757537	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	6	116757537	116757537	C	T	SNP	DSE	NM_001080976.1	human	genbank	58_37c	+1	reviewed	missense	c.1906	p.P636S	1.000	NULL	NULL	-	no_errors
ELL2	22936	genome.wustl.edu	37	5	95226942	95226942	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	5	95226942	95226942	C	G	SNP	ELL2	NM_012081.5	human	genbank	58_37c	-1	validated	missense	c.1626	p.Q542H	1.000	HMMPfam_Occludin_ELL	HMMPfam_Occludin_ELL,HMMPfam_ELL	-	no_errors
FAM105B	90268	genome.wustl.edu	37	5	14687728	14687728	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	5	14687728	14687728	A	G	SNP	FAM105B	NM_138348.4	human	genbank	58_37c	+1	validated	silent	c.567	p.K189	0.998	NULL	NULL	-	no_errors
FNBP4	23360	genome.wustl.edu	37	11	47753007	47753007	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	47753007	47753007	C	T	SNP	FNBP4	NM_015308.2	human	genbank	58_37c	-1	validated	missense	c.1927	p.D643N	0.997	NULL	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain	-	no_errors
GPR12	2835	genome.wustl.edu	37	13	27333003	27333003	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	13	27333003	27333003	G	A	SNP	GPR12	NM_005288.3	human	genbank	58_37c	-1	validated	missense	c.962	p.P321L	1.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
HAUS5	23354	genome.wustl.edu	37	19	36109508	36109508	+	Missense_Mutation	SNP	G	A	A	rs188926778	by1000genomes	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	19	36109508	36109508	G	A	SNP	HAUS5	NM_015302.1	human	genbank	58_37c	+1	validated	missense	c.923	p.R308Q	0.989	NULL	NULL	-	no_errors
HGD	3081	genome.wustl.edu	37	3	120394696	120394696	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	3	120394696	120394696	A	C	SNP	HGD	NM_000187.3	human	genbank	58_37c	-1	reviewed	missense	c.30	p.F10L	0.998	HMMPfam_HgmA,superfamily_RmlC-like cupins	HMMPfam_HgmA,superfamily_RmlC-like cupins	-	no_errors
HMBS	3145	genome.wustl.edu	37	11	118963868	118963868	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	118963868	118963868	C	T	SNP	HMBS	NM_000190.3	human	genbank	58_37c	+1	reviewed	missense	c.961	p.R321C	0.029	HMMPfam_Porphobil_deamC,superfamily_Porphobilinogen deaminase (hydroxymethylbilane synthase) C-terminal domain	HMMPfam_Porphobil_deam,HMMPfam_Porphobil_deamC,PatternScan_PORPHOBILINOGEN_DEAM,superfamily_Porphobilinogen deaminase (hydroxymethylbilane synthase) C-terminal domain,superfamily_Periplasmic binding protein-like II	-	no_errors
HTATSF1	27336	genome.wustl.edu	37	X	135593486	135593486	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	X	135593486	135593486	G	A	SNP	HTATSF1	NM_014500.4	human	genbank	58_37c	+1	reviewed	missense	c.1582	p.E528K	0.003	NULL	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
KCNQ3	3786	genome.wustl.edu	37	8	133186503	133186503	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	8	133186503	133186503	A	T	SNP	KCNQ3	NM_004519.2	human	genbank	58_37c	-1	reviewed	missense	c.1027	p.F343I	1.000	HMMPfam_Ion_trans,superfamily_SSF81324	HMMPfam_Ion_trans,HMMPfam_KCNQ_channel,superfamily_SSF81324	-	no_errors
KIAA1755	85449	genome.wustl.edu	37	20	36841609	36841609	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	20	36841609	36841609	A	-	DEL	KIAA1755	NM_001029864.1	human	genbank	58_37c	-1	predicted	frame_shift_del	c.3438	p.D1147fs	0.000	NULL	superfamily_Spectrin repeat	-	no_errors
KIAA1755	85449	genome.wustl.edu	37	20	36841611	36841623	+	Frame_Shift_Del	DEL	GCAGCTTGTGGGA	GCAGCTTGTGGGA	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	GCAGCTTGTGGGA	GCAGCTTGTGGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	20	36841611	36841623	GCAGCTTGTGGGA	-	DEL	KIAA1755	NM_001029864.1	human	genbank	58_37c	-1	predicted	frame_shift_del	c.3436_3424	p.S1142fs	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	NULL	superfamily_Spectrin repeat	-	no_errors
KIF1B	23095	genome.wustl.edu	37	1	10397180	10397180	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	1	10397180	10397180	G	A	SNP	KIF1B	NM_015074.3	human	genbank	58_37c	+1	reviewed	missense	c.3040	p.E1014K	1.000	NULL	HMMPfam_FHA,HMMSmart_SM00240,HMMPfam_Kinesin,HMMSmart_SM00129,HMMPfam_PH,HMMSmart_SM00233,superfamily_SMAD/FHA domain,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_PH domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC100287788	0	genome.wustl.edu	37	2	74605024	74605024	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	2	74605024	74605024	G	C	SNP	LOC100287788	XM_002342212.1	human	genbank	58_37c	+1	model	splice_site	c.766-1	e9-1	0.000	-	-	-	no_errors
LOC100289482	0	genome.wustl.edu	37	X	79277953	79277953	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	X	79277953	79277953	G	T	SNP	LOC100289482	XM_002343832.1	human	genbank	58_37c	-1	model	missense	c.86	p.A29E	0.000	NULL	NULL	-	no_errors
MAP3K11	4296	genome.wustl.edu	37	11	65374961	65374961	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	65374961	65374961	C	T	SNP	MAP3K11	NM_002419.3	human	genbank	58_37c	-1	reviewed	silent	c.1269	p.E423	1.000	NULL	HMMSmart_TyrKc,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MED8	112950	genome.wustl.edu	37	1	43852271	43852271	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	1	43852271	43852271	G	C	SNP	MED8	NM_052877.3	human	genbank	58_37c	-1	reviewed	nonsense	c.482	p.S161*	1.000	HMMPfam_Arc32	HMMPfam_Arc32	-	no_errors
MMP16	4325	genome.wustl.edu	37	8	89130939	89130939	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	8	89130939	89130939	C	T	SNP	MMP16	NM_005941.4	human	genbank	58_37c	-1	reviewed	silent	c.861	p.Q287	1.000	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"	"superfamily_Hemopexin-like domain,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD-like,HMMSmart_SM00235,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_SM00120,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
MMRN1	22915	genome.wustl.edu	37	4	90856574	90856574	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	4	90856574	90856574	G	A	SNP	MMRN1	NM_007351.2	human	genbank	58_37c	+1	reviewed	silent	c.1743	p.L581	0.663	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_C1q,HMMSmart_SM00110,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_TNF-like,HMMPfam_EMI,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin	-	no_errors
MON1B	22879	genome.wustl.edu	37	16	77227443	77227443	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	16	77227443	77227443	G	C	SNP	MON1B	NM_014940.2	human	genbank	58_37c	+1	validated	missense	c.244	p.E82Q	0.203	NULL	HMMPfam_Mon1	-	no_errors
MUC5B	727897	genome.wustl.edu	37	11	1251029	1251053	+	In_Frame_Del	DEL	CAGCTCCTGGTACTTATGAGCCCAC	CAGCTCCTGGTACTTATGAGCCCAC	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	CAGCTCCTGGTACTTATGAGCCCAC	CAGCTCCTGGTACTTATGAGCCCAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	1251029	1251053	CAGCTCCTGGTACTTATGAGCCCAC	-	DEL	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	splice_site_del	c.1229+10_1229+1	e11-1	0.893:0.283:0.283:0.255:0.390:0.855:0.940:0.998:1.000:1.000:0.985:0.796:0.022:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.001:0.014	-	-	-	no_errors
MYH1	4619	genome.wustl.edu	37	17	10399833	10399833	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	17	10399833	10399833	G	A	SNP	MYH1	NM_005963.3	human	genbank	58_37c	-1	reviewed	missense	c.4690	p.R1564C	1.000	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NOBOX	135935	genome.wustl.edu	37	7	144097327	144097327	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	7	144097327	144097327	G	A	SNP	NOBOX	NM_001080413.2	human	genbank	58_37c	-1	provisional	missense	c.923	p.T308M	0.016	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	no_errors
OR52H1	390067	genome.wustl.edu	37	11	5566050	5566050	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	5566050	5566050	C	-	DEL	OR52H1	NM_001005289.1	human	genbank	58_37c	-1	provisional	frame_shift_del	c.704	p.G235fs	0.137	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR5I1	10798	genome.wustl.edu	37	11	55703513	55703513	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	55703513	55703513	A	T	SNP	OR5I1	NM_006637.1	human	genbank	58_37c	-1	reviewed	missense	c.364	p.Y122N	0.638	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR8G5	219865	genome.wustl.edu	37	11	124135016	124135016	+	Silent	SNP	C	T	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	124135016	124135016	C	T	SNP	OR8G5	NM_001005198.1	human	genbank	58_37c	+1	provisional	silent	c.294	p.L98	0.570	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,superfamily_SSF81321	-	no_errors
PAK7	57144	genome.wustl.edu	37	20	9546864	9546864	+	Silent	SNP	G	G	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	20	9546864	9546864	G	C	SNP	PAK7	NM_020341.3	human	genbank	58_37c	-1	reviewed	silent	c.1158	p.P386	0.000	NULL	HMMPfam_PBD,HMMSmart_PBD,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PAN2	9924	genome.wustl.edu	37	12	56713711	56713711	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	12	56713711	56713711	C	T	SNP	PAN2	NM_001127460.2	human	genbank	58_37c	-1	reviewed	silent	c.2895	p.L965	1.000	superfamily_Ribonuclease H-like	HMMPfam_UCH,HMMSmart_SM00479,superfamily_WD40 repeat-like,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T,superfamily_Cysteine proteinases	-	no_errors
PCDH11X	27328	genome.wustl.edu	37	X	91873742	91873742	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	X	91873742	91873742	G	A	SNP	PCDH11X	NM_032968.3	human	genbank	58_37c	+1	reviewed	missense	c.3847	p.V1283M	0.972	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,HMMPfam_Protocadherin,superfamily_Cadherin-like	-	no_errors
PCDHA5	56143	genome.wustl.edu	37	5	140203381	140203381	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	5	140203381	140203381	C	T	SNP	PCDHA5	NM_018908.2	human	genbank	58_37c	+1	reviewed	missense	c.2021	p.A674V	0.008	HMMSmart_SM00112	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PHF14	9678	genome.wustl.edu	37	7	11022484	11022484	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	7	11022484	11022484	C	T	SNP	PHF14	ENST00000303905	human	ensembl	58_37c	+1	known	silent	c.598	p.L200	1.000	NULL	HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
PLEC	0	genome.wustl.edu	37	8	144997236	144997236	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	8	144997236	144997236	G	A	SNP	PLEC	NM_201380.2	human	genbank	58_37c	-1	reviewed	silent	c.7272	p.A2424	0.959	NULL	HMMPfam_Plectin,HMMSmart_SM00250,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat	-	no_errors
PLOD3	8985	genome.wustl.edu	37	7	100861229	100861229	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	7	100861229	100861229	C	G	SNP	PLOD3	ENST00000414785	human	ensembl	58_37c	-1	known	missense	c.22	p.V8L	0.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region
POLB	5423	genome.wustl.edu	37	8	42207581	42207591	+	In_Frame_Del	DEL	TGGGTAAGAAC	TGGGTAAGAAC	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	TGGGTAAGAAC	TGGGTAAGAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	8	42207581	42207591	TGGGTAAGAAC	-	DEL	POLB	NM_002690.1	human	genbank	58_37c	+1	provisional	splice_site_del	c.320+4_320+1	e6-1	0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.828:0.629:0.138	-	-	-	no_errors
PREPL	9581	genome.wustl.edu	37	2	44565657	44565657	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	2	44565657	44565657	C	G	SNP	PREPL	NM_006036.4	human	genbank	58_37c	-1	reviewed	missense	c.988	p.D330H	0.672	HMMPfam_Peptidase_S9_N,superfamily_Prolyl oligopeptidase N-terminal domain	HMMPfam_Peptidase_S9,HMMPfam_Peptidase_S9_N,superfamily_Prolyl oligopeptidase N-terminal domain,superfamily_alpha/beta-Hydrolases	-	no_errors
RELN	5649	genome.wustl.edu	37	7	103214731	103214731	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	7	103214731	103214731	C	A	SNP	RELN	NM_005045.3	human	genbank	58_37c	-1	reviewed	missense	c.4319	p.C1440F	1.000	HMMSmart_EGF,PatternScan_EGF_2	HMMPfam_Reeler,HMMSmart_EGF,superfamily_Sialidase,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF57196	-	no_errors
RFX3	5991	genome.wustl.edu	37	9	3293227	3293227	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	9	3293227	3293227	G	C	SNP	RFX3	NM_134428.1	human	genbank	58_37c	-1	reviewed	missense	c.581	p.A194G	1.000	"HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_RFX_DNA_binding,HMMPfam_RFX1_trans_act,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
RYR1	6261	genome.wustl.edu	37	19	38954480	38954480	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	19	38954480	38954480	G	A	SNP	RYR1	NM_000540.2	human	genbank	58_37c	+1	reviewed	missense	c.2776	p.E926K	1.000	HMMPfam_RyR	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SCARNA9	0	genome.wustl.edu	37	11	93454832	93454835	+	RNA	DEL	GTGT	GTGT	-	rs143635317	by1000genomes	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	GTGT	GTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	93454832	93454835	GTGT	-	DEL	SCARNA9	NR_002569.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.007:0.008:0.006:0.000	-	-	-	no_errors
SLC12A7	10723	genome.wustl.edu	37	5	1075597	1075597	+	Missense_Mutation	SNP	G	G	C	rs143947354	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	5	1075597	1075597	G	C	SNP	SLC12A7	NM_006598.2	human	genbank	58_37c	-1	validated	missense	c.1856	p.S619C	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SLC25A32	81034	genome.wustl.edu	37	8	104412655	104412655	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	8	104412655	104412655	C	T	SNP	SLC25A32	NM_030780.3	human	genbank	58_37c	-1	validated	missense	c.932	p.R311K	0.998	HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
SLCO4C1	353189	genome.wustl.edu	37	5	101631639	101631639	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	5	101631639	101631639	G	A	SNP	SLCO4C1	NM_180991.4	human	genbank	58_37c	-1	validated	missense	c.328	p.H110Y	0.063	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter	HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895	-	no_errors
SOX5	6660	genome.wustl.edu	37	12	23887621	23887621	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	12	23887621	23887621	G	A	SNP	SOX5	NM_006940.4	human	genbank	58_37c	-1	reviewed	silent	c.807	p.I269	1.000	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box,PatternScan_TONB_DEPENDENT_REC_1	-	no_errors
SSX2IP	117178	genome.wustl.edu	37	1	85136470	85136470	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	1	85136470	85136470	T	C	SNP	SSX2IP	NM_014021.3	human	genbank	58_37c	-1	reviewed	silent	c.72	p.S24	1.000	NULL	NULL	-	no_errors
STX5	6811	genome.wustl.edu	37	11	62595056	62595056	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	62595056	62595056	G	A	SNP	STX5	NM_003164.3	human	genbank	58_37c	-1	validated	silent	c.273	p.R91	1.000	HMMPfam_Syntaxin,superfamily_t-snare proteins	HMMPfam_SNARE,HMMSmart_SM00397,HMMPfam_Syntaxin,PatternScan_SYNTAXIN,superfamily_t-snare proteins	-	no_errors
TBKBP1	9755	genome.wustl.edu	37	17	45785815	45785815	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	17	45785815	45785815	G	T	SNP	TBKBP1	NM_014726.2	human	genbank	58_37c	+1	validated	nonsense	c.928	p.E310*	1.000	NULL	NULL	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578503	7578518	+	Frame_Shift_Del	DEL	CAGGGCAGGTCTTGGC	CAGGGCAGGTCTTGGC	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	CAGGGCAGGTCTTGGC	CAGGGCAGGTCTTGGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	17	7578503	7578518	CAGGGCAGGTCTTGGC	-	DEL	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.427_412	p.A138fs	0.828:0.010:0.998:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.924:1.000:1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRIM48	79097	genome.wustl.edu	37	11	55032759	55032759	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	55032759	55032759	G	A	SNP	TRIM48	NM_024114.3	human	genbank	58_37c	+1	validated	missense	c.428	p.C143Y	0.981	HMMPfam_zf-B_box,HMMSmart_SM00336	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
TRIM5	85363	genome.wustl.edu	37	11	5701072	5701083	+	In_Frame_Del	DEL	GACCTTCCCGTC	GACCTTCCCGTC	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	GACCTTCCCGTC	GACCTTCCCGTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	5701072	5701083	GACCTTCCCGTC	-	DEL	TRIM5	NM_033034.2	human	genbank	58_37c	-1	reviewed	in_frame_del	c.336_325	p.DGKV109in_frame_del	0.899:0.694:0.020:0.019:0.015:0.009:0.000:0.000:0.001:0.077:0.995:1.000	HMMPfam_zf-B_box,HMMSmart_SM00336	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMSmart_SM00449,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
TRPC4	7223	genome.wustl.edu	37	13	38229311	38229311	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	13	38229311	38229311	T	A	SNP	TRPC4	NM_003306.1	human	genbank	58_37c	-1	validated	missense	c.1798	p.M600L	1.000	HMMPfam_Ion_trans	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_Ion_trans,HMMPfam_TRP_2,PatternScan_RIBOSOMAL_S2_1	-	no_errors
TSEN2	80746	genome.wustl.edu	37	3	12558155	12558155	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	3	12558155	12558155	G	C	SNP	TSEN2	NM_001145392.1	human	genbank	58_37c	+1	reviewed	missense	c.955	p.E319Q	0.997	HMMPfam_tRNA_int_endo_N	HMMPfam_tRNA_int_endo,superfamily_tRNA-intron endonuclease catalytic domain-like,HMMPfam_tRNA_int_endo_N	-	no_errors
TTK	7272	genome.wustl.edu	37	6	80746293	80746293	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	6	80746293	80746293	A	G	SNP	TTK	NM_003318.4	human	genbank	58_37c	+1	reviewed	missense	c.2026	p.T676A	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
UNC93B5	0	genome.wustl.edu	37	11	67483428	67483428	+	Missense_Mutation	SNP	C	C	T	rs6591284	byCluster;by2Hit2Allele;by1000genomes	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	11	67483428	67483428	C	T	SNP	UNC93B5	ENST00000332844	human	ensembl	58_37c	-1	known	missense	c.49	p.V17M	0.132	NULL	NULL	-	no_start_codon
VPS13A	23230	genome.wustl.edu	37	9	79827929	79827929	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	9	79827929	79827929	G	C	SNP	VPS13A	NM_033305.2	human	genbank	58_37c	+1	reviewed	missense	c.600	p.E200D	1.000	NULL	HMMPfam_DUF1162	-	no_errors
ZC3H7B	23264	genome.wustl.edu	37	22	41734248	41734248	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	22	41734248	41734248	G	A	SNP	ZC3H7B	ENST00000396532	human	ensembl	58_37c	+1	known	missense	c.343	p.G115R	0.003	NULL	NULL	-	no_errors
ZNF41	7592	genome.wustl.edu	37	X	47308385	47308385	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	X	47308385	47308385	G	C	SNP	ZNF41	NM_007130.2	human	genbank	58_37c	-1	reviewed	missense	c.784	p.Q262E	0.772	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF488	118738	genome.wustl.edu	37	10	48371106	48371106	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	10	48371106	48371106	C	A	SNP	ZNF488	NM_153034.2	human	genbank	58_37c	+1	provisional	missense	c.574	p.L192M	0.824	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZNF512B	57473	genome.wustl.edu	37	20	62592679	62592679	+	Silent	SNP	G	A	A	rs112150897	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	20	62592679	62592679	G	A	SNP	ZNF512B	NM_020713.1	human	genbank	58_37c	-1	provisional	silent	c.2410	p.L804	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZNF560	147741	genome.wustl.edu	37	19	9577519	9577519	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8bb90325-028e-491a-bbaf-2cf4b3b87cd6	527b325c-63e5-4f66-9caf-6081829fbc2a	19	9577519	9577519	G	A	SNP	ZNF560	NM_152476.2	human	genbank	58_37c	-1	validated	missense	c.2104	p.R702C	0.227	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
