Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
VPS13D	55187	broad.mit.edu	37	1	12443077	12443077	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:12443077G>T	uc001atv.2	+	58	11374	c.11233G>T	c.(11233-11235)GTT>TTT	p.V3745F	VPS13D_uc001atw.2_Missense_Mutation_p.V3720F|VPS13D_uc001atx.2_Missense_Mutation_p.V2932F|VPS13D_uc009vnl.2_RNA	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3744					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AGCTGAAGTTGTTCTTGGTCC	0.423000													39	138					2.00842e-17	2.74052e-17	1	0
EIF4G3	8672	broad.mit.edu	37	1	21268711	21268711	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:21268711T>C	uc001bec.2	-	9	1024	c.768A>G	c.(766-768)ATA>ATG	p.I256M	EIF4G3_uc010odi.1_Translation_Start_Site|EIF4G3_uc010odj.1_Missense_Mutation_p.I255M|EIF4G3_uc009vpz.2_Intron|EIF4G3_uc001bed.2_Missense_Mutation_p.I256M|EIF4G3_uc001bef.2_Missense_Mutation_p.I255M|EIF4G3_uc001bee.2_Missense_Mutation_p.I262M|EIF4G3_uc001beg.2_Missense_Mutation_p.I255M|EIF4G3_uc010odk.1_Missense_Mutation_p.I256M|EIF4G3_uc001beh.2_Missense_Mutation_p.I267M	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	256					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		CTATGGATACTATTGCAGTAG	0.483000													49	103					0	0	0	0
RAP1GAP	5909	broad.mit.edu	37	1	21936074	21936074	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:21936074G>A	uc001bex.2	-	15	1323	c.1065C>T	c.(1063-1065)TTC>TTT	p.F355F	RAP1GAP_uc001bev.2_Silent_p.F355F|RAP1GAP_uc001bew.2_Silent_p.F419F|RAP1GAP_uc001bey.2_Silent_p.F355F	NM_002885	NP_002876	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein isoform c	355	Rap-GAP.				regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		TCACCTTCCTGAACACAGCGG	0.612000													59	182					0	0	0	0
SFRS4	6429	broad.mit.edu	37	1	29475724	29475724	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:29475724G>A	uc001bro.2	-	6	1056	c.683C>T	c.(682-684)TCC>TTC	p.S228F	SFRS4_uc010ofy.1_Silent_p.L126L	NM_005626	NP_005617	Q08170	SRSF4_HUMAN	splicing factor, arginine/serine-rich 4	228	Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nuclear speck	nucleotide binding|RNA binding				0		Colorectal(325;0.00161)|Breast(348;0.0364)|Myeloproliferative disorder(586;0.0393)|all_neural(195;0.0529)|Lung NSC(340;0.0654)|all_lung(284;0.074)|Ovarian(437;0.104)|Medulloblastoma(700;0.151)		Colorectal(126;1.01e-07)|COAD - Colon adenocarcinoma(152;6.21e-06)|STAD - Stomach adenocarcinoma(196;0.0196)|BRCA - Breast invasive adenocarcinoma(304;0.0531)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.138)		cTTGCTCCGGGAGCGGGAGCC	0.433000													7	26					0	0	0	0
ZNF643	65243	broad.mit.edu	37	1	40922676	40922677	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:40922676_40922677GG>TT	uc001cfn.1	+	3	570_571	c.273_274GG>TT	c.(271-276)CTGGCC>CTTTCC	p.A92S	ZNF643_uc001cfl.1_5'UTR|ZNF643_uc001cfm.1_5'UTR	NM_023070	NP_075558	Q9UJL9	ZN643_HUMAN	zinc finger protein 643	92	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.25e-18)			GGGGGCAGCTGGCCCCTGCTCA	0.515000													15	29					0	0	0	0
CDC20	991	broad.mit.edu	37	1	43824947	43824947	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:43824947C>T	uc001cix.2	+	2	162	c.61C>T	c.(61-63)CCC>TCC	p.P21S	CDC20_uc001ciy.2_Missense_Mutation_p.P21S	NM_001255	NP_001246	Q12834	CDC20_HUMAN	cell division cycle 20	21					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of synapse maturation|positive regulation of synaptic plasticity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	cytosol|nucleoplasm|spindle	enzyme binding|protein C-terminus binding				0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				TGCACCCATCCCCAATGCACC	0.697000													29	103					0	0	0	0
LEPR	3953	broad.mit.edu	37	1	66102514	66102514	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:66102514C>A	uc001dci.2	+	20	3516	c.3314C>A	c.(3313-3315)CCA>CAA	p.P1105Q	LEPR_uc009waq.2_3'UTR	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	1105	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TGCCCATTCCCAGCCCCCTGT	0.398000													7	31					0.00448238	0.00459091	1	0
NEGR1	257194	broad.mit.edu	37	1	72163747	72163747	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:72163747C>A	uc001dfw.2	-	4	711	c.611G>T	c.(610-612)AGT>ATT	p.S204I	NEGR1_uc001dfv.2_Missense_Mutation_p.S76I|NEGR1_uc010oqs.1_Intron	NM_173808	NP_776169	Q7Z3B1	NEGR1_HUMAN	neuronal growth regulator 1 precursor	204	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane				ovary(1)	1		all_cancers(4;1.26e-06)|Renal(4;1.32e-08)|all_epithelial(4;5.39e-07)|Hepatocellular(141;0.117)		KIRC - Kidney renal clear cell carcinoma(4;0.00529)|Kidney(4;0.00609)|all cancers(265;0.022)|GBM - Glioblastoma multiforme(62;0.0382)|Epithelial(280;0.242)		ATTTTCCGCACTGCATTCATA	0.353000													20	69					1.96292e-10	2.37913e-10	1	0
C1orf173	127254	broad.mit.edu	37	1	75036915	75036915	+	Silent	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:75036915C>A	uc001dgg.2	-	14	4698	c.4479G>T	c.(4477-4479)GCG>GCT	p.A1493A		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1493										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GTGTTGCCATCGCCTGTAGAC	0.522000													54	160					3.73128e-16	4.99472e-16	1	0
ABCA4	24	broad.mit.edu	37	1	94544242	94544242	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:94544242T>A	uc001dqh.2	-	10	1364	c.1260A>T	c.(1258-1260)GAA>GAT	p.E420D	ABCA4_uc010otn.1_Missense_Mutation_p.E420D	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	420	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CGTGTTCCAGTTCTTCAAAAG	0.443000													55	173					0	0	0	0
AMY2B	280	broad.mit.edu	37	1	104117863	104117863	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:104117863G>T	uc001duq.2	+	8	1513	c.897G>T	c.(895-897)TGG>TGT	p.W299C	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.W299C|AMY2B_uc001dus.1_5'Flank	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	299					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		GAGAAGGTTGGGGTTTCATGC	0.418000													100	574					5.70617e-39	8.74533e-39	1	0
FAM63A	55793	broad.mit.edu	37	1	150969807	150969807	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:150969807G>A	uc001ewf.2	-	11	3050	c.1366C>T	c.(1366-1368)CGT>TGT	p.R456C	FAM63A_uc001ewc.2_Missense_Mutation_p.R314C|FAM63A_uc010pcm.1_Missense_Mutation_p.R361C|FAM63A_uc001ewd.2_Missense_Mutation_p.R314C|FAM63A_uc001ewe.2_Missense_Mutation_p.R290C|FAM63A_uc010pcn.1_Missense_Mutation_p.R504C|FAM63A_uc001ewg.2_Missense_Mutation_p.R456C	NM_018379	NP_001156731	Q8N5J2	FA63A_HUMAN	hypothetical protein LOC55793 isoform 1	456							protein binding			ovary(1)	1	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CTCTGCCGACGCTCCCCGGCT	0.567000													4	13					0	0	0	0
FLG	2312	broad.mit.edu	37	1	152277874	152277874	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:152277874C>G	uc001ezu.1	-	3	9524	c.9488G>C	c.(9487-9489)AGA>ACA	p.R3163T		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3163	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACGTGTTGTTCTGCTTGCACT	0.542000									Ichthyosis				102	341					0	0	0	0
CD1E	913	broad.mit.edu	37	1	158325293	158325293	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:158325293G>C	uc001fse.2	+	3	798	c.559G>C	c.(559-561)GGT>CGT	p.G187R	CD1E_uc010pid.1_Missense_Mutation_p.G185R|CD1E_uc010pie.1_Missense_Mutation_p.G88R|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Missense_Mutation_p.G187R|CD1E_uc001fsk.2_Intron|CD1E_uc001fsj.2_Intron|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Missense_Mutation_p.G187R|CD1E_uc001fry.2_Missense_Mutation_p.G187R|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Missense_Mutation_p.G187R|CD1E_uc009wsv.2_Missense_Mutation_p.G88R|CD1E_uc001frz.2_Intron|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	187					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					AAGCCTTCTTGGTCACACCTG	0.527000													11	36					0	0	0	0
BLZF1	8548	broad.mit.edu	37	1	169345927	169345927	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:169345927C>T	uc001gfx.1	+	3	615	c.178C>T	c.(178-180)CCA>TCA	p.P60S	BLZF1_uc001gfw.2_Missense_Mutation_p.P60S|BLZF1_uc001gfy.2_Missense_Mutation_p.P60S|BLZF1_uc009wvp.1_Missense_Mutation_p.P37S	NM_003666	NP_003657	Q9H2G9	GO45_HUMAN	basic leucine zipper nuclear factor 1	60					cell proliferation|Golgi organization|Golgi to plasma membrane protein transport|regulation of cell growth|regulation of transcription from RNA polymerase II promoter	Golgi lumen|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|ubiquitin protein ligase binding			skin(1)	1	all_hematologic(923;0.208)					ATCAGAGAGCCCAGGAGTTCT	0.423000													19	64					0	0	0	0
RC3H1	149041	broad.mit.edu	37	1	173912638	173912638	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:173912638C>G	uc001gju.3	-	17	3164	c.3077G>C	c.(3076-3078)AGC>ACC	p.S1026T	RC3H1_uc010pms.1_Missense_Mutation_p.S1017T|RC3H1_uc001gjv.2_Missense_Mutation_p.S1017T|RC3H1_uc010pmt.1_Missense_Mutation_p.S1026T	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	1026					cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CAGTTCCAAGCTCAACTGCTC	0.547000													41	189					0	0	0	0
RC3H1	149041	broad.mit.edu	37	1	173912667	173912667	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:173912667C>G	uc001gju.3	-	17	3135	c.3048G>C	c.(3046-3048)TGG>TGC	p.W1016C	RC3H1_uc010pms.1_Missense_Mutation_p.W1007C|RC3H1_uc001gjv.2_Missense_Mutation_p.W1007C|RC3H1_uc010pmt.1_Missense_Mutation_p.W1016C	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	1016					cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TCATCCCAGGCCATTTTGGAG	0.547000													36	153					0	0	0	0
TNN	63923	broad.mit.edu	37	1	175067630	175067630	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:175067630C>G	uc001gkl.1	+	9	2131	c.2018C>G	c.(2017-2019)ACA>AGA	p.T673R	TNN_uc010pmx.1_Missense_Mutation_p.T584R	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	673	Fibronectin type-III 5.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CAGAGCAGCACAGTCCTGACA	0.632000													39	73					0	0	0	0
PAPPA2	60676	broad.mit.edu	37	1	176668584	176668584	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:176668584A>T	uc001gkz.2	+	8	4259	c.3095A>T	c.(3094-3096)GAT>GTT	p.D1032V	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1032					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						ATAGAGATTGATGCAGCACTC	0.537000													27	96					0	0	0	0
FAM5B	57795	broad.mit.edu	37	1	177249566	177249566	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:177249566G>T	uc001glf.2	+	8	1566	c.1254G>T	c.(1252-1254)TGG>TGT	p.W418C	FAM5B_uc001glg.2_Missense_Mutation_p.W313C	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	418						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CCTACTGGTGGAACCGAATCC	0.507000													24	92					1.12875e-08	1.31532e-08	1	0
CFHR5	81494	broad.mit.edu	37	1	196973962	196973962	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:196973962C>T	uc001gts.3	+	9	1630	c.1502C>T	c.(1501-1503)CCA>CTA	p.P501L		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	501	Sushi 8.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						TCAGAACCACCAAGATGCCTA	0.373000													19	55					0	0	0	0
CRB1	23418	broad.mit.edu	37	1	197446935	197446935	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:197446935C>A	uc001gtz.2	+	12	4282	c.4147C>A	c.(4147-4149)CGT>AGT	p.R1383S	CRB1_uc010poz.1_Missense_Mutation_p.R1359S|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.R1271S|CRB1_uc010ppb.1_Missense_Mutation_p.R847S|CRB1_uc010ppd.1_Missense_Mutation_p.R864S	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1383	Cytoplasmic (Potential).		R -> H (in RP12).		cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CAGCCCCAGCCGTCAGGAGAA	0.542000													24	63					3.7963e-18	5.23074e-18	1	0
PPP1R12B	4660	broad.mit.edu	37	1	202406978	202406978	+	Silent	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:202406978A>G	uc001gya.1	+	10	1428	c.1284A>G	c.(1282-1284)GAA>GAG	p.E428E	PPP1R12B_uc001gxy.2_Silent_p.E428E|PPP1R12B_uc009xad.1_Silent_p.E234E|PPP1R12B_uc009xae.1_3'UTR|PPP1R12B_uc001gxz.1_Silent_p.E428E	NM_002481	NP_002472	O60237	MYPT2_HUMAN	protein phosphatase 1, regulatory (inhibitor)	428					regulation of muscle contraction|signal transduction	cytoplasm	enzyme activator activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(75;0.166)			ACAAGCCAGAAGAGCCCAAAG	0.413000													19	47					0	0	0	0
USH2A	7399	broad.mit.edu	37	1	216074184	216074184	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:216074184C>A	uc001hku.1	-	39	7751	c.7364G>T	c.(7363-7365)TGG>TTG	p.W2455L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2455	Extracellular (Potential).|Fibronectin type-III 11.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGGTGTAGACCAGACAACCTG	0.512000										HNSCC(13;0.011)			37	96					4.17593e-13	5.2729e-13	1	0
USH2A	7399	broad.mit.edu	37	1	216262432	216262432	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:216262432C>T	uc001hku.1	-	23	5195	c.4808G>A	c.(4807-4809)AGT>AAT	p.S1603N		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1603	Laminin G-like 1.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTTTCCATCACTATATTGTTT	0.333000										HNSCC(13;0.011)			30	116					0	0	0	0
SLC30A10	55532	broad.mit.edu	37	1	220101747	220101747	+	Silent	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:220101747G>C	uc001hlw.2	-	1	247	c.36C>G	c.(34-36)CTC>CTG	p.L12L	SLC30A10_uc001hlu.1_Intron|SLC30A10_uc001hlx.2_5'UTR	NM_018713	NP_061183	Q6XR72	ZNT10_HUMAN	solute carrier family 30 (zinc transporter),	12	Helical; (Potential).				zinc ion transport	integral to membrane|plasma membrane	cation transmembrane transporter activity				0				GBM - Glioblastoma multiforme(131;0.051)|all cancers(67;0.209)		CCAGCATGAAGAGCAGCCGGC	0.587000													10	29					0	0	0	0
ZP4	57829	broad.mit.edu	37	1	238050152	238050152	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:238050152G>A	uc001hym.2	-	6	758	c.758C>T	c.(757-759)GCA>GTA	p.A253V	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	253	ZP.|Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			TTCATATACTGCTCGGTCTCC	0.468000													24	78					0	0	0	0
FMN2	56776	broad.mit.edu	37	1	240370796	240370796	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:240370796C>A	uc010pyd.1	+	5	2909	c.2684C>A	c.(2683-2685)GCC>GAC	p.A895D	FMN2_uc010pye.1_Missense_Mutation_p.A899D	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	895	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCAGTACAGCCATTCCCCAA	0.657000													76	199					1.21826e-31	1.84044e-31	1	0
NLRP3	114548	broad.mit.edu	37	1	247607419	247607419	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:247607419C>A	uc001icr.2	+	9	2953	c.2815C>A	c.(2815-2817)CCC>ACC	p.P939T	NLRP3_uc001ics.2_Missense_Mutation_p.P882T|NLRP3_uc001icu.2_Missense_Mutation_p.P939T|NLRP3_uc001icw.2_Missense_Mutation_p.P882T|NLRP3_uc001icv.2_Missense_Mutation_p.P825T|NLRP3_uc010pyw.1_Missense_Mutation_p.P917T	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	939					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			ACTCTTGCACCCCGACTGCAA	0.522000													14	56					1.99824e-07	2.23612e-07	1	0
OR6F1	343169	broad.mit.edu	37	1	247875546	247875546	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:247875546G>T	uc001idj.1	-	1	512	c.512C>A	c.(511-513)CCC>CAC	p.P171H		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GATGGCACGGGGGCCACAGAA	0.597000													37	109					9.62906e-15	1.25713e-14	1	0
OR2T1	26696	broad.mit.edu	37	1	248569862	248569862	+	Silent	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:248569862G>T	uc010pzm.1	+	1	567	c.567G>T	c.(565-567)CGG>CGT	p.R189R		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	189	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGAGCCGCCGGGTCTGTTGGA	0.557000													36	70					1.69901e-12	2.13259e-12	1	0
ITIH5	80760	broad.mit.edu	37	10	7683946	7683946	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:7683946C>T	uc001ijq.2	-	3	322	c.243G>A	c.(241-243)CAG>CAA	p.Q81Q	ITIH5_uc001ijr.1_Silent_p.Q81Q	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	81	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						ACTCAATGTCCTGGTCTTCAG	0.468000													29	98					0	0	0	0
CUBN	8029	broad.mit.edu	37	10	17145223	17145223	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:17145223G>A	uc001ioo.2	-	13	1483	c.1431C>T	c.(1429-1431)TCC>TCT	p.S477S		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	477	CUB 1.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TTCCTGAGAGGGACTCTCCAC	0.438000													12	43					0	0	0	0
GPR158	57512	broad.mit.edu	37	10	25701259	25701259	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:25701259G>T	uc001isj.2	+	4	1252	c.1192G>T	c.(1192-1194)GGC>TGC	p.G398C		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	398	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						TTGCAGGGAGGGCTGCCCCTT	0.488000													65	178					8.09925e-49	1.25955e-48	1	0
PARD3	56288	broad.mit.edu	37	10	34739281	34739281	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:34739281G>A	uc010qej.1	-	5	678	c.678C>T	c.(676-678)CAC>CAT	p.H226H	PARD3_uc010qek.1_Silent_p.H226H|PARD3_uc010qel.1_Silent_p.H226H|PARD3_uc010qem.1_Silent_p.H226H|PARD3_uc010qen.1_Silent_p.H226H|PARD3_uc010qeo.1_Silent_p.H226H|PARD3_uc010qep.1_Intron|PARD3_uc010qeq.1_Intron|PARD3_uc001ixp.1_Silent_p.H91H|PARD3_uc001ixq.1_Silent_p.H226H|PARD3_uc001ixr.1_Silent_p.H226H|PARD3_uc001ixt.1_Intron|PARD3_uc001ixu.1_Intron	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	226					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				CCACCATTGGGTGACTGGCAC	0.463000													34	94					0	0	0	0
ZNF239	8187	broad.mit.edu	37	10	44053168	44053168	+	Silent	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:44053168C>A	uc001jaw.3	-	2	1013	c.360G>T	c.(358-360)CTG>CTT	p.L120L	ZNF239_uc001jax.3_Silent_p.L120L|ZNF239_uc009xmj.2_Silent_p.L120L|ZNF239_uc009xmk.2_Silent_p.L120L	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	120					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						CATCAGACACCAGTTTAACTT	0.428000													21	58					2.4624e-09	2.90138e-09	1	0
TMEM72	643236	broad.mit.edu	37	10	45429211	45429211	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:45429211C>A	uc001jbn.2	+	4	533	c.336C>A	c.(334-336)CAC>CAA	p.H112Q	uc001jbk.1_Intron|uc001jbl.2_Intron|TMEM72_uc009xmm.1_5'UTR	NM_001123376	NP_001116848	A0PK05	TMM72_HUMAN	transmembrane protein 72	112	Helical; (Potential).					integral to membrane					0						TGGTCTGGCACGTGACCATCC	0.607000													25	55					7.07758e-08	8.02632e-08	1	0
ARID5B	84159	broad.mit.edu	37	10	63852352	63852352	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:63852352G>T	uc001jlt.1	+	10	3156	c.3130G>T	c.(3130-3132)GAG>TAG	p.E1044*		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	1044					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					CTCTGGGAAGGAGAAGGCCTC	0.602000													25	65					9.86323e-18	1.35459e-17	1	0
C10orf27	219793	broad.mit.edu	37	10	72541663	72541663	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:72541663C>A	uc001jrj.1	-	4	561	c.171G>T	c.(169-171)AGG>AGT	p.R57S	C10orf27_uc010qjm.1_Missense_Mutation_p.R57S|C10orf27_uc009xqh.1_RNA|C10orf27_uc010qjn.1_Missense_Mutation_p.R57S|C10orf27_uc009xqi.1_RNA|C10orf27_uc010qjo.1_Missense_Mutation_p.R46S|C10orf27_uc009xqj.1_Missense_Mutation_p.R46S|C10orf27_uc010qjp.1_Missense_Mutation_p.R46S	NM_152710	NP_689923	Q96M53	SPATL_HUMAN	stromal protein associated with thymii and lymph	57					cell differentiation|multicellular organismal development|spermatogenesis	cytosol				skin(1)	1						GCTTTGGGGTCCTCAATGCCC	0.622000													41	145					1.03325e-14	1.34481e-14	1	0
RNLS	55328	broad.mit.edu	37	10	90122434	90122434	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:90122434G>T	uc001kfe.2	-	5	710	c.575C>A	c.(574-576)TCT>TAT	p.S192Y	RNLS_uc010qms.1_Missense_Mutation_p.S109Y|RNLS_uc001kfd.2_Missense_Mutation_p.S192Y|RNLS_uc009xtj.2_Missense_Mutation_p.S24Y	NM_001031709	NP_001026879	Q5VYX0	RNLS_HUMAN	renalase isoform 1	192						extracellular region	oxidoreductase activity			ovary(1)	1						AGCATATCGAGAGGAGTAGCT	0.448000													17	50					2.48551e-13	3.15726e-13	1	0
KIF11	3832	broad.mit.edu	37	10	94369264	94369264	+	Silent	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:94369264T>C	uc001kic.2	+	6	1004	c.696T>C	c.(694-696)TCT>TCC	p.S232S	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	232	Kinesin-motor.				blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						ATGCATACTCTAGGTAAGAAA	0.408000													91	213					0	0	0	0
VWA2	340706	broad.mit.edu	37	10	116049132	116049132	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:116049132C>A	uc001lbl.1	+	12	2327	c.2006C>A	c.(2005-2007)CCT>CAT	p.P669H	VWA2_uc001lbk.1_Missense_Mutation_p.P669H|VWA2_uc009xyf.1_Missense_Mutation_p.P365H	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	669	VWFA 3.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		GGCGTGGGGCCTGTCCTAAGT	0.632000													34	84					8.73648e-17	1.17692e-16	1	0
KCNK18	338567	broad.mit.edu	37	10	118960766	118960766	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:118960766T>A	uc010qsr.1	+	2	320	c.320T>A	c.(319-321)CTC>CAC	p.L107H		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	107						integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		CTGAGCTCGCTCTTTTTCTGC	0.567000													41	77					0	0	0	0
EBF3	253738	broad.mit.edu	37	10	131666137	131666137	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:131666137C>T	uc001lki.1	-	9	853	c.794G>A	c.(793-795)TGG>TAG	p.W265*		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	274	IPT/TIG.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding	p.W265C(1)		central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		CCCCGTGGTCCAGCCTTCACT	0.587000													20	93					0	0	0	0
KNDC1	85442	broad.mit.edu	37	10	135015300	135015300	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:135015300C>A	uc001llz.1	+	17	3286	c.3285C>A	c.(3283-3285)AGC>AGA	p.S1095R	KNDC1_uc001lma.1_Missense_Mutation_p.S1030R|KNDC1_uc001lmb.1_Missense_Mutation_p.S507R	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1095					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		GCTGGTGCAGCGCCTTCTACG	0.716000													4	11					1.024e-07	1.15816e-07	1	0
OR52N2	390077	broad.mit.edu	37	11	5842439	5842439	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:5842439C>A	uc010qzp.1	+	1	874	c.874C>A	c.(874-876)CCA>ACA	p.P292T	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TACCATGAACCCAATTGTTTA	0.378000													22	90					4.4004e-07	4.88549e-07	1	0
OR56A5	390084	broad.mit.edu	37	11	5988829	5988829	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:5988829G>C	uc010qzu.1	-	1	896	c.896C>G	c.(895-897)ACC>AGC	p.T299S		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	299	Cytoplasmic (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						GATCTCCTTGGTTCTCACACC	0.458000													11	18					0	0	0	0
OR52L1	338751	broad.mit.edu	37	11	6007720	6007720	+	Silent	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:6007720G>T	uc001mcd.2	-	1	496	c.441C>A	c.(439-441)CCC>CCA	p.P147P		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	147	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AATGGTGCAAGGGGTGACAAA	0.517000													14	54					3.99206e-14	5.14829e-14	1	0
CCKBR	887	broad.mit.edu	37	11	6290966	6290966	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:6290966G>A	uc001mcp.2	+	2	412	c.219G>A	c.(217-219)ATG>ATA	p.M73I	CCKBR_uc001mcq.2_Missense_Mutation_p.M1I|CCKBR_uc001mcr.2_Missense_Mutation_p.M73I|CCKBR_uc001mcs.2_Missense_Mutation_p.M73I	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	73	Helical; Name=1; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	GAGGAAATATGCTCATCATCG	0.552000													39	136					0	0	0	0
DCHS1	8642	broad.mit.edu	37	11	6651019	6651019	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:6651019G>T	uc001mem.1	-	11	5329	c.4919C>A	c.(4918-4920)GCT>GAT	p.A1640D		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	1640	Cadherin 15.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTTGACGTCAGCGACACTGAC	0.632000													22	57					2.89027e-11	3.56438e-11	1	0
INSC	387755	broad.mit.edu	37	11	15134052	15134052	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:15134052G>T	uc001mly.2	+	1	83	c.37G>T	c.(37-39)GAA>TAA	p.E13*	INSC_uc001mlz.2_5'Flank	NM_001031853	NP_001027024	Q1MX18	INSC_HUMAN	inscuteable isoform a	13					cell differentiation|nervous system development	cytoplasm	binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)	5						GGCGGCCAGCGAAGGTCCAGG	0.552000													19	64					3.5997e-14	4.65649e-14	1	0
KCNA4	3739	broad.mit.edu	37	11	30032839	30032839	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:30032839C>A	uc001msk.2	-	2	2539	c.1387G>T	c.(1387-1389)GGC>TGC	p.G463C		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	463						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						ATCTGCAGGCCTTTGGAGTGC	0.542000													17	62					2.48551e-13	3.15726e-13	1	0
OR5D18	219438	broad.mit.edu	37	11	55587449	55587449	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:55587449T>C	uc010rin.1	+	1	344	c.344T>C	c.(343-345)TTA>TCA	p.L115S		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				GAATCCTTTTTATTAGCTGTG	0.438000													44	140					0	0	0	0
OR4D11	219986	broad.mit.edu	37	11	59271673	59271673	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:59271673C>A	uc001noa.1	+	1	625	c.625C>A	c.(625-627)CTG>ATG	p.L209M		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGTCACTACCCTGTGGTTTAT	0.512000													23	98					0.000117367	0.000124739	1	0
PLAC1L	219990	broad.mit.edu	37	11	59814417	59814417	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:59814417G>A	uc001nol.2	+	4	533	c.348G>A	c.(346-348)AGG>AGA	p.R116R		NM_173801	NP_776162	Q86WS3	PLACL_HUMAN	placenta-specific 1-like precursor	116						extracellular region				ovary(2)|skin(1)	3						TTTTCTTTAGGAAATCAGTGT	0.363000													36	133					0	0	0	0
NRXN2	9379	broad.mit.edu	37	11	64421183	64421183	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:64421183C>A	uc001oar.2	-	13	2840	c.2401G>T	c.(2401-2403)GTC>TTC	p.V801F	NRXN2_uc001oas.2_Intron|NRXN2_uc001oaq.2_Missense_Mutation_p.V468F	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						GCGCAGCCGACGCGCAGGCAG	0.577000													3	13					0.00024832	0.000259998	1	0
RASGRP2	10235	broad.mit.edu	37	11	64502700	64502700	+	Splice_Site	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:64502700C>T	uc009ypu.2	-	12	1524	c.1297_splice	c.e12-1	p.S433_splice	RASGRP2_uc001oat.2_Splice_Site_p.S335_splice|RASGRP2_uc001oau.2_Splice_Site_p.S288_splice|RASGRP2_uc009ypv.2_Splice_Site_p.S433_splice|RASGRP2_uc009ypw.2_Splice_Site_p.S433_splice	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2						platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						GGAACACAGACTGGGGCACGC	0.567000													9	45					0	0	0	0
LRTOMT	220074	broad.mit.edu	37	11	71804597	71804597	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:71804597G>A	uc001orr.2	+	4	516	c.138G>A	c.(136-138)TCG>TCA	p.S46S	LRTOMT_uc009ysz.2_RNA|LRTOMT_uc010rqt.1_Silent_p.S46S|LRTOMT_uc010rqu.1_Silent_p.S28S|LRTOMT_uc009yta.2_Intron|LRTOMT_uc010rqv.1_5'UTR|LRTOMT_uc010rqw.1_5'UTR|LRTOMT_uc001ors.3_5'UTR|LRTOMT_uc010rqs.1_Silent_p.S46S	NM_145309	NP_660352	Q96E66	LRC51_HUMAN	leucine rich transmembrane and	46						cytoplasm					0						GTTCAAAGTCGGGGAAATCAC	0.488000													8	37					0	0	0	0
P2RY6	5031	broad.mit.edu	37	11	73008014	73008014	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:73008014G>A	uc001otm.2	+	4	856	c.451G>A	c.(451-453)GTG>ATG	p.V151M	P2RY6_uc001otn.2_Missense_Mutation_p.V151M|P2RY6_uc001oto.2_Missense_Mutation_p.V151M|P2RY6_uc001otp.2_Missense_Mutation_p.V151M|P2RY6_uc001otq.2_Missense_Mutation_p.V151M|P2RY6_uc001otr.2_Missense_Mutation_p.V151M|P2RY6_uc001ots.2_Missense_Mutation_p.V151M	NM_176796	NP_789766	Q15077	P2RY6_HUMAN	pyrimidinergic receptor P2Y6	151	Helical; Name=4; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1						GTGTGTAGCCGTGTGGCTGGC	0.667000													28	73					0	0	0	0
ANKRD49	54851	broad.mit.edu	37	11	94231288	94231288	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:94231288A>G	uc001pew.2	+	3	449	c.310A>G	c.(310-312)AGG>GGG	p.R104G	ANKRD49_uc001pex.2_3'UTR|ANKRD49_uc001pey.2_RNA	NM_017704	NP_060174	Q8WVL7	ANR49_HUMAN	fetal globin inducing factor	104					positive regulation of transcription, DNA-dependent					central_nervous_system(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				CGTGAACACTAGGGATGAAGA	0.448000													14	46					0	0	0	0
PGR	5241	broad.mit.edu	37	11	100920717	100920717	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:100920717G>T	uc001pgh.2	-	6	3174	c.2431C>A	c.(2431-2433)CTT>ATT	p.L811I	PGR_uc001pgg.2_Missense_Mutation_p.L192I|PGR_uc001pgi.2_Missense_Mutation_p.L709I|PGR_uc009yww.1_Intron|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	811	Steroid-binding.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	CTAACTTGAAGCTTGACAAAC	0.368000													16	51					3.32936e-07	3.7061e-07	1	0
NPAT	4863	broad.mit.edu	37	11	108057265	108057265	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:108057265C>T	uc001pjz.3	-	8	772	c.670G>A	c.(670-672)GGC>AGC	p.G224S	NPAT_uc001pka.2_Missense_Mutation_p.G19S	NM_002519	NP_002510	Q14207	NPAT_HUMAN	nuclear protein,  ataxia-telangiectasia locus	224	Interaction with MIZF.				positive regulation of transcription, DNA-dependent|regulation of transcription involved in G1/S phase of mitotic cell cycle	Cajal body	protein C-terminus binding|protein N-terminus binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			ovary(2)	2		all_cancers(61;2.31e-10)|all_epithelial(67;1.11e-06)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;1.05e-05)|Epithelial(105;3.01e-05)|all cancers(92;0.000816)|Colorectal(284;0.116)		GAATGAGGGCCAGACAAAGTG	0.323000													17	63					0	0	0	0
LAYN	143903	broad.mit.edu	37	11	111428319	111428319	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:111428319C>T	uc001plr.1	+	7	1072	c.736C>T	c.(736-738)CTC>TTC	p.L246F	LAYN_uc001plp.1_Missense_Mutation_p.L238F|LAYN_uc001plq.1_Missense_Mutation_p.L246F|LAYN_uc001pls.1_Missense_Mutation_p.L238F|LAYN_uc010rwg.1_Missense_Mutation_p.L93F|LAYN_uc010rwh.1_Missense_Mutation_p.L94F	NM_178834	NP_849156	Q6UX15	LAYN_HUMAN	layilin	246	Helical; (Potential).					cell surface|integral to membrane|ruffle	hyaluronic acid binding|sugar binding				0		all_cancers(61;9.06e-10)|all_epithelial(67;1.34e-05)|Melanoma(852;1.74e-05)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.086)		Epithelial(105;1.5e-06)|BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|all cancers(92;2.45e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0476)		CCTTCTCCTCCTCCTTGTGGT	0.428000													178	575					0	0	0	0
HINFP	25988	broad.mit.edu	37	11	119001570	119001570	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:119001570A>T	uc001pvp.2	+	4	506	c.317A>T	c.(316-318)CAG>CTG	p.Q106L	HINFP_uc010rzb.1_Missense_Mutation_p.Q106L|HINFP_uc001pvq.2_Missense_Mutation_p.Q106L|HINFP_uc001pvr.2_5'Flank	NM_015517	NP_056332	Q9BQA5	HINFP_HUMAN	MBD2 (methyl-CpG-binding protein)-interacting	106					DNA damage checkpoint|DNA repair|establishment of protein localization|in utero embryonic development|myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription involved in G1/S phase of mitotic cell cycle	Cajal body	enzyme binding|histone binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						TTGCAAAGCCAGGCTGACCTT	0.567000													37	114					0	0	0	0
ZNF202	7753	broad.mit.edu	37	11	123598283	123598283	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:123598283C>A	uc001pzd.1	-	8	1253	c.853G>T	c.(853-855)GAT>TAT	p.D285Y	ZNF202_uc001pzc.1_Missense_Mutation_p.D61Y|ZNF202_uc001pze.1_Missense_Mutation_p.D285Y|ZNF202_uc001pzf.1_Missense_Mutation_p.D285Y	NM_003455	NP_003446	O95125	ZN202_HUMAN	zinc finger protein 202	285	KRAB.				lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.03)		GAGATCTCATCAGGTCTGGGG	0.473000													11	54					6.31663e-08	7.22144e-08	1	0
TMEM225	338661	broad.mit.edu	37	11	123756006	123756006	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:123756006C>T	uc001pzi.2	-	1	335	c.127G>A	c.(127-129)GCC>ACC	p.A43T		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	43						integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						TTCATCTTGGCTCTTTCATCT	0.463000													24	75					0	0	0	0
OR10G8	219869	broad.mit.edu	37	11	123900458	123900458	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:123900458C>T	uc001pzp.1	+	1	129	c.129C>T	c.(127-129)ATC>ATT	p.I43I		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		ACCTCCTCATCCTGCTGGTGA	0.572000													43	153					0	0	0	0
SIAE	54414	broad.mit.edu	37	11	124524633	124524633	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:124524633G>A	uc001qan.2	-	4	575	c.462C>T	c.(460-462)ATC>ATT	p.I154I		NM_170601	NP_733746	Q9HAT2	SIAE_HUMAN	sialate O-acetylesterase precursor	154						extracellular region|lysosome	carboxylesterase activity|sialate O-acetylesterase activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0243)		AGACAGAGAGGATGCGGACAG	0.483000													33	123					0	0	0	0
OPCML	4978	broad.mit.edu	37	11	132307219	132307219	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:132307219C>T	uc001qgs.2	-	4	611	c.561G>A	c.(559-561)CTG>CTA	p.L187L	OPCML_uc001qgu.2_Silent_p.L180L|OPCML_uc010sck.1_Silent_p.L187L|OPCML_uc001qgt.2_Silent_p.L186L|OPCML_uc010scl.1_Silent_p.L146L	NM_002545	NP_002536	Q14982	OPCM_HUMAN	opioid binding protein/cell adhesion	187	Ig-like C2-type 2.				cell adhesion|neuron recognition	anchored to membrane|integral to plasma membrane	opioid receptor activity			ovary(2)|skin(1)	3	all_hematologic(175;0.019)	all_cancers(12;5.86e-24)|all_epithelial(12;2.65e-17)|all_lung(97;2.89e-05)|Lung NSC(97;6.16e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0269)|all_neural(223;0.0326)|Esophageal squamous(93;0.129)		all cancers(11;4.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.012)		CAGAGATCTCCAGGTACTCAT	0.498000													5	26					0	0	0	0
KCNA1	3736	broad.mit.edu	37	12	5020791	5020791	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:5020791G>A	uc001qnh.2	+	2	1352	c.247G>A	c.(247-249)GAC>AAC	p.D83N		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	83					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GTACTTCTTCGACCGCAACCG	0.632000													23	88					0	0	0	0
RPL13AP20	387841	broad.mit.edu	37	12	13028528	13028528	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:13028528G>T	uc010sho.1	+	1	118	c.96G>T	c.(94-96)AAG>AAT	p.K32N		NR_003932				SubName: Full=Ribosomal protein L13a variant; Flags: Fragment;												0						TGGGCCGGAAGGTGGTGGTTG	0.552000													15	54					6.72482e-11	8.22139e-11	1	0
GUCY2C	2984	broad.mit.edu	37	12	14772149	14772149	+	Silent	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:14772149G>T	uc001rcd.2	-	24	3008	c.2871C>A	c.(2869-2871)GGC>GGA	p.G957G		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	957	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						TCTTACGGAGGCCAGTGGATT	0.463000													25	66					3.1745e-13	4.0204e-13	1	0
MGP	4256	broad.mit.edu	37	12	15035941	15035941	+	Silent	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:15035941G>T	uc001rcn.1	-	3	238	c.135C>A	c.(133-135)TCC>TCA	p.S45S		NM_000900	NP_000891	P08493	MGP_HUMAN	matrix Gla protein precursor	45					cartilage condensation|cell differentiation|ossification|regulation of bone mineralization	proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent|structural constituent of bone			ovary(1)	1						TCTGCTGAGGGGATATGAAGG	0.393000													24	67					1.13719e-10	1.38227e-10	1	0
PIK3C2G	5288	broad.mit.edu	37	12	18793370	18793370	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:18793370C>T	uc001rdt.2	+	31	4183	c.4067C>T	c.(4066-4068)CCA>CTA	p.P1356L	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.P1397L|PIK3C2G_uc010sic.1_Missense_Mutation_p.P1175L	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1356	C2.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				CAGCATCTCCCAGATGGCTCT	0.388000													8	25					0	0	0	0
KRT76	51350	broad.mit.edu	37	12	53171043	53171043	+	Silent	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:53171043A>G	uc001sax.2	-	1	87	c.33T>C	c.(31-33)AGT>AGC	p.S11S		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	11	Head.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						GGCTCCTGCCACTGAAGGATT	0.577000													17	38					0	0	0	0
SILV	6490	broad.mit.edu	37	12	56348080	56348080	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:56348080C>T	uc001sip.2	-	11	1935	c.1904G>A	c.(1903-1905)AGT>AAT	p.S635N	SILV_uc001siq.2_Missense_Mutation_p.S642N|SILV_uc010spx.1_Missense_Mutation_p.S549N|SILV_uc001sir.2_Missense_Mutation_p.S635N	NM_006928	NP_008859	P40967	PMEL_HUMAN	silver homolog	635	Cytoplasmic (Potential).				melanin biosynthetic process|melanosome organization	endoplasmic reticulum membrane|extracellular region|Golgi apparatus|integral to membrane|melanosome|multivesicular body membrane|plasma membrane	protein binding				0						CAGCCAGTGACTGCTGCTATG	0.527000													11	65					0	0	0	0
SLC39A5	283375	broad.mit.edu	37	12	56625236	56625236	+	Silent	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:56625236C>A	uc010sqj.1	+	4	435	c.178C>A	c.(178-180)CGG>AGG	p.R60R	SLC39A5_uc010sqi.1_Intron|SLC39A5_uc010sqk.1_Silent_p.R60R	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	60	Extracellular (By similarity).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						GGGCTTGGCGCGGCTTCTCCA	0.652000													36	79					3.33393e-15	4.40704e-15	1	0
RDH16	8608	broad.mit.edu	37	12	57348845	57348845	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:57348845C>T	uc001smi.3	-	2	589	c.417G>A	c.(415-417)TTG>TTA	p.L139L	RDH16_uc009zpa.2_Intron	NM_003708	NP_003699	O75452	RDH16_HUMAN	retinol dehydrogenase 16	139	Cytoplasmic (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	binding|electron carrier activity|retinol dehydrogenase activity				0						CAATCACCCCCAACAAGTTCA	0.572000													26	86					0	0	0	0
PTPRR	5801	broad.mit.edu	37	12	71155305	71155305	+	Silent	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:71155305G>T	uc001swi.1	-	4	989	c.573C>A	c.(571-573)ATC>ATA	p.I191I	PTPRR_uc010stq.1_Silent_p.I79I	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	191	Extracellular (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		GCAAAACATTGATATTAAGTG	0.368000													43	142					1.51926e-22	2.21602e-22	1	0
TRHDE	29953	broad.mit.edu	37	12	72893318	72893318	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:72893318T>A	uc001sxa.2	+	6	1520	c.1490T>A	c.(1489-1491)ATG>AAG	p.M497K		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	497	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						CATGAAGTGATGCTGCTGGAC	0.453000													21	48					0	0	0	0
EPYC	1833	broad.mit.edu	37	12	91358040	91358040	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:91358040G>T	uc001tbk.2	-	7	955	c.862C>A	c.(862-864)CGT>AGT	p.R288S		NM_004950	NP_004941	Q99645	EPYC_HUMAN	dermatan sulfate proteoglycan 3 precursor	288					female pregnancy	proteinaceous extracellular matrix	glycosaminoglycan binding			skin(1)	1						AGTGCCTTACGAATATAAGTC	0.363000													26	70					5.61819e-17	7.59263e-17	1	0
SLC17A8	246213	broad.mit.edu	37	12	100796512	100796512	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:100796512G>C	uc010svi.1	+	8	1355	c.1042G>C	c.(1042-1044)GCA>CCA	p.A348P	SLC17A8_uc009ztx.2_Intron	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	348	Vesicular (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						CTTTGGATTTGCAATAAGTAA	0.333000													14	25					0	0	0	0
CORO1C	23603	broad.mit.edu	37	12	109042422	109042422	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:109042422G>A	uc001tnj.2	-	10	1360	c.1264C>T	c.(1264-1266)CTG>TTG	p.L422L	CORO1C_uc009zva.2_Silent_p.L475L|CORO1C_uc010sxf.1_Silent_p.L385L	NM_014325	NP_055140	Q9ULV4	COR1C_HUMAN	coronin, actin binding protein, 1C isoform 1	422					actin cytoskeleton organization|phagocytosis|signal transduction	actin cytoskeleton	actin filament binding			skin(3)	3						ATGCTGATCAGGTCGCACTTC	0.522000													18	82					0	0	0	0
USP30	84749	broad.mit.edu	37	12	109495876	109495876	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:109495876C>G	uc010sxi.1	+	3	443	c.339C>G	c.(337-339)CAC>CAG	p.H113Q	USP30_uc001tnu.3_Missense_Mutation_p.H82Q	NM_032663	NP_116052	Q70CQ3	UBP30_HUMAN	ubiquitin specific peptidase 30	113	Cytoplasmic (Potential).				ubiquitin-dependent protein catabolic process	integral to membrane|mitochondrial outer membrane	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(1)	1						CCCCCTCACACCAGTATTTAT	0.483000													77	382					0	0	0	0
OAS3	4940	broad.mit.edu	37	12	113384761	113384761	+	Silent	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:113384761T>C	uc001tug.2	+	4	937	c.850T>C	c.(850-852)TTG>CTG	p.L284L		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	284	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						TGGGCAGTTCTTGCAGCGGCA	0.557000													6	30					0	0	0	0
DIABLO	56616	broad.mit.edu	37	12	122692938	122692938	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:122692938C>A	uc010tab.1	-	7	1515	c.710G>T	c.(709-711)CGT>CTT	p.R237L	DIABLO_uc010taa.1_Missense_Mutation_p.R184L|DIABLO_uc010tac.1_RNA|DIABLO_uc010tad.1_Missense_Mutation_p.R193L|VPS33A_uc001ucc.2_RNA	NM_019887	NP_063940	Q9NR28	DBLOH_HUMAN	diablo isoform 1 precursor	237					activation of caspase activity by cytochrome c|induction of apoptosis via death domain receptors	CD40 receptor complex|cytosol|internal side of plasma membrane|mitochondrial intermembrane space	protein binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000302)|Epithelial(86;0.00051)|BRCA - Breast invasive adenocarcinoma(302;0.223)		TCAATCCTCACGCAGGTAGGC	0.607000													19	82					7.45023e-12	9.26896e-12	1	0
GLT1D1	144423	broad.mit.edu	37	12	129442151	129442151	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:129442151A>G	uc010tbh.1	+	12	866	c.857A>G	c.(856-858)AAG>AGG	p.K286R	GLT1D1_uc001uhx.1_Missense_Mutation_p.K201R|GLT1D1_uc001uhy.1_RNA	NM_144669	NP_653270	Q96MS3	GL1D1_HUMAN	glycosyltransferase 1 domain containing 1	281					biosynthetic process	extracellular region	transferase activity, transferring glycosyl groups				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.97e-06)|Epithelial(86;3.97e-05)|all cancers(50;0.00019)		GCCGTGGTGAAGCATGAAGTC	0.468000													13	57					0	0	0	0
TMEM132D	121256	broad.mit.edu	37	12	129559166	129559166	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:129559166C>A	uc009zyl.1	-	9	2882	c.2554G>T	c.(2554-2556)GGA>TGA	p.G852*	TMEM132D_uc001uia.2_Nonsense_Mutation_p.G390*	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	852	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		GTGCCCCGTCCCTCCATGAGT	0.532000													12	53					4.36969e-10	5.22141e-10	1	0
PIWIL1	9271	broad.mit.edu	37	12	130856065	130856065	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:130856065C>G	uc001uik.2	+	21	2598	c.2508C>G	c.(2506-2508)CAC>CAG	p.H836Q		NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	836	Piwi.				gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		AGTACGCCCACAAGCTGGCTT	0.463000													36	138					0	0	0	0
RIMBP2	23504	broad.mit.edu	37	12	130921644	130921644	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:130921644T>C	uc001uil.2	-	10	1962	c.1798A>G	c.(1798-1800)AAG>GAG	p.K600E	RIMBP2_uc001uim.2_Missense_Mutation_p.K508E|RIMBP2_uc001uin.1_Missense_Mutation_p.K259E	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	600	Pro-rich.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		GCTAATGGCTTTGATTGGGGT	0.657000													6	9					0	0	0	0
POLE	5426	broad.mit.edu	37	12	133253236	133253236	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:133253236G>A	uc001uks.1	-	9	849	c.805C>T	c.(805-807)CCT>TCT	p.P269S	POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.P242S	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	269					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		AAAACCACAGGGTCCTGTGGG	0.498000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					9	17					0	0	0	0
SACS	26278	broad.mit.edu	37	13	23907284	23907284	+	Silent	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr13:23907284T>C	uc001uon.2	-	10	11320	c.10731A>G	c.(10729-10731)ACA>ACG	p.T3577T	SACS_uc001uoo.2_Silent_p.T3430T|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3577					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		ATGTCATAAATGTAACATGAT	0.323000													15	13					0	0	0	0
CDK8	1024	broad.mit.edu	37	13	26911769	26911769	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr13:26911769G>A	uc001uqr.1	+	2	220	c.194G>A	c.(193-195)AGA>AAA	p.R65K	CDK8_uc001uqs.1_Missense_Mutation_p.R65K|CDK8_uc001uqt.1_5'UTR	NM_001260	NP_001251	P49336	CDK8_HUMAN	cyclin-dependent kinase 8	65	Protein kinase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mediator complex	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|large_intestine(1)|ovary(1)|skin(1)	5	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0384)|Epithelial(112;0.142)|OV - Ovarian serous cystadenocarcinoma(117;0.188)		TCGGCATGTAGAGAAATAGCA	0.284000													28	55					0	0	0	0
LCP1	3936	broad.mit.edu	37	13	46728938	46728938	+	Splice_Site	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr13:46728938A>T	uc001vaz.3	-	6	699	c.573_splice	c.e6+1	p.Q191_splice	LCP1_uc001vba.3_Splice_Site_p.Q191_splice	NM_002298	NP_002289	P13796	PLSL_HUMAN	L-plastin						regulation of intracellular protein transport|T cell activation involved in immune response	cell junction|cytosol|ruffle membrane	calcium ion binding			lung(4)|ovary(3)	7		Lung NSC(96;1.27e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.39e-05)		GGGAAGACATACCTGAATGGT	0.408000			T	BCL6	NHL 								25	34					0	0	0	0
CAB39L	81617	broad.mit.edu	37	13	49925023	49925023	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr13:49925023G>T	uc001vcw.2	-	5	919	c.421C>A	c.(421-423)CGT>AGT	p.R141S	CAB39L_uc001vcx.2_Missense_Mutation_p.R141S|CAB39L_uc010adf.2_Missense_Mutation_p.R138S	NM_030925	NP_112187	Q9H9S4	CB39L_HUMAN	calcium binding protein 39-like	141					cell cycle arrest|insulin receptor signaling pathway|regulation of fatty acid oxidation	cytosol	protein binding				0		Lung NSC(96;2.11e-05)|Breast(56;0.00017)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.66e-09)|COAD - Colon adenocarcinoma(199;0.226)		ATCCCACAACGTAAGGCAATC	0.353000													20	42					4.54149e-19	6.40349e-19	1	0
MYCBP2	23077	broad.mit.edu	37	13	77835401	77835401	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr13:77835401G>A	uc001vkf.2	-	13	1734	c.1643C>T	c.(1642-1644)TCA>TTA	p.S548L	MYCBP2_uc010aev.2_5'UTR	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	548					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GTGTCCAACTGAGAAGTGTAC	0.428000													30	68					0	0	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454740	84454740	+	Silent	SNP	T	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr13:84454740T>A	uc001vlk.2	-	1	1789	c.903A>T	c.(901-903)CCA>CCT	p.P301P		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	301	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GAGCAGACCCTGGTGTGGCAT	0.557000													8	32					0	0	0	0
F10	2159	broad.mit.edu	37	13	113793676	113793676	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr13:113793676G>C	uc001vsx.2	+	4	319	c.262G>C	c.(262-264)GAC>CAC	p.D88H	F10_uc010agq.1_RNA|F10_uc001vsy.2_Missense_Mutation_p.D88H|F10_uc001vsz.2_Missense_Mutation_p.D88H	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	88	EGF-like 1; calcium-binding (Potential).				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGCAGATGGCGACCAGTGTGA	0.507000													13	22					0	0	0	0
C14orf21	161424	broad.mit.edu	37	14	24769253	24769253	+	Silent	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr14:24769253C>G	uc001wol.1	+	1	156	c.93C>G	c.(91-93)CCC>CCG	p.P31P	DHRS1_uc001woj.1_5'Flank|DHRS1_uc001wok.2_5'Flank	NM_174913	NP_777573	Q86U38	CN021_HUMAN	hypothetical protein LOC161424	31							RNA binding			breast(2)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(265;0.0185)		CGGGGCGCCCCTTACCAGGCC	0.706000													7	18					0	0	0	0
FSCB	84075	broad.mit.edu	37	14	44973723	44973723	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr14:44973723G>T	uc001wvn.2	-	1	2777	c.2468C>A	c.(2467-2469)CCT>CAT	p.P823H		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	823						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		CTACAGTTCAGGAGGACGTTG	0.393000													10	47					1.08611e-07	1.22187e-07	1	0
SAV1	60485	broad.mit.edu	37	14	51111689	51111689	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr14:51111689G>A	uc001wyg.1	-	4	740	c.579C>T	c.(577-579)AAC>AAT	p.N193N	SAV1_uc001wyh.1_Silent_p.N193N	NM_021818	NP_068590	Q9H4B6	SAV1_HUMAN	WW45 protein	193					hippo signaling cascade	cytoplasm|nucleus	identical protein binding			breast(1)	1	all_epithelial(31;0.000611)|Breast(41;0.0333)					CAGAACCATGGTTAGTCAAAT	0.378000													12	47					0	0	0	0
NID2	22795	broad.mit.edu	37	14	52520434	52520434	+	Missense_Mutation	SNP	G	A	A	rs142884639	byFrequency	TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr14:52520434G>A	uc001wzo.2	-	5	1526	c.1292C>T	c.(1291-1293)TCG>TTG	p.S431L	NID2_uc010tqs.1_Missense_Mutation_p.S431L|NID2_uc010tqt.1_Missense_Mutation_p.S431L|NID2_uc001wzp.2_Missense_Mutation_p.S431L	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	431						basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					ATCCATTTCCGAAGGCACTGG	0.537000													20	78					0	0	0	0
SAMD4A	23034	broad.mit.edu	37	14	55241726	55241726	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr14:55241726G>T	uc001xbb.2	+	9	1788	c.1787G>T	c.(1786-1788)CGC>CTC	p.R596L	SAMD4A_uc001xbc.2_Missense_Mutation_p.R508L|SAMD4A_uc001xbg.2_Missense_Mutation_p.R188L	NM_015589	NP_056404	Q9UPU9	SMAG1_HUMAN	sterile alpha motif domain containing 4 isoform	597					positive regulation of translation	cell junction|cytoplasm|dendrite|synapse|synaptosome	translation repressor activity				0						CGGAACCCGCGCCAGTACCAG	0.637000													38	94					1.49673e-21	2.16821e-21	1	0
KIAA0586	9786	broad.mit.edu	37	14	59014613	59014613	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr14:59014613A>T	uc001xdv.3	+	30	4655	c.4382A>T	c.(4381-4383)CAG>CTG	p.Q1461L	KIAA0586_uc010trr.1_Silent_p.A1606A|KIAA0586_uc001xdt.3_Missense_Mutation_p.Q1493L|KIAA0586_uc001xdu.3_Missense_Mutation_p.Q1522L|KIAA0586_uc010trs.1_Missense_Mutation_p.Q1452L	NM_014749	NP_055564	E9PGW8	E9PGW8_HUMAN	talpid3 protein	1461										ovary(1)	1						AGCACAATGCAGGAGGACATG	0.527000													27	131					0	0	0	0
KCNH5	27133	broad.mit.edu	37	14	63417206	63417206	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr14:63417206C>T	uc001xfx.2	-	7	1065	c.1014G>A	c.(1012-1014)CTG>CTA	p.L338L	KCNH5_uc001xfy.2_Silent_p.L338L|KCNH5_uc001xfz.1_Silent_p.L280L|KCNH5_uc001xga.2_Silent_p.L280L	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	338	Helical; Voltage-sensor; Name=Segment S4; (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GGTAATGGTCCAGTTTCCTAG	0.473000													23	58					0	0	0	0
PLEKHG3	26030	broad.mit.edu	37	14	65207915	65207915	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr14:65207915G>C	uc001xho.1	+	16	1949	c.1680G>C	c.(1678-1680)ATG>ATC	p.M560I	PLEKHG3_uc001xhn.1_Missense_Mutation_p.M504I|PLEKHG3_uc001xhp.2_Missense_Mutation_p.M681I|PLEKHG3_uc010aqh.1_Missense_Mutation_p.M102I|PLEKHG3_uc001xhq.1_Missense_Mutation_p.M65I	NM_015549	NP_056364	A1L390	PKHG3_HUMAN	pleckstrin homology domain containing, family G,	560					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)	1				all cancers(60;0.00802)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)|BRCA - Breast invasive adenocarcinoma(234;0.0485)		CAGGTGACATGGTGGACTTCG	0.607000													46	176					0	0	0	0
ZFYVE1	53349	broad.mit.edu	37	14	73490889	73490889	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr14:73490889C>A	uc001xnm.2	-	2	968	c.328G>T	c.(328-330)GGG>TGG	p.G110W	ZFYVE1_uc010arj.2_Missense_Mutation_p.G110W	NM_021260	NP_067083	Q9HBF4	ZFYV1_HUMAN	zinc finger, FYVE domain containing 1 isoform 1	110						endoplasmic reticulum|Golgi stack|perinuclear region of cytoplasm	1-phosphatidylinositol binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|zinc ion binding			skin(1)	1		all_lung(585;1.33e-09)		OV - Ovarian serous cystadenocarcinoma(108;1.6e-46)|BRCA - Breast invasive adenocarcinoma(234;0.00349)		TTGTTACCCCCAGAATGAGTC	0.493000													71	245					3.82405e-32	5.79775e-32	1	0
KIAA1409	57578	broad.mit.edu	37	14	94084605	94084605	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr14:94084605T>A	uc001ybv.1	+	27	3910	c.3827T>A	c.(3826-3828)CTC>CAC	p.L1276H	KIAA1409_uc001ybs.1_Missense_Mutation_p.L1254H	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1431						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GTCAATACACTCAATGCGCAG	0.428000													21	75					0	0	0	0
DLK1	8788	broad.mit.edu	37	14	101200935	101200935	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr14:101200935T>A	uc001yhs.3	+	5	1007	c.854T>A	c.(853-855)CTG>CAG	p.L285Q	DLK1_uc001yhu.3_Intron	NM_003836	NP_003827	P80370	DLK1_HUMAN	delta-like 1 homolog precursor	285	Extracellular (Potential).				multicellular organismal development	extracellular space|integral to membrane|soluble fraction				ovary(2)|breast(1)|skin(1)	4		Melanoma(154;0.155)				CACCGCATCCTGAAGGTGTCC	0.657000													27	85					0	0	0	0
Unknown	0	broad.mit.edu	37	15	20658908	20658908	+	Silent	SNP	T	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:20658908T>A	uc001ytg.2	-	14	1978	c.1269A>T	c.(1267-1269)GGA>GGT	p.G423G	uc010tyx.1_Intron|uc001yth.3_Silent_p.G423G|uc010tyy.1_Silent_p.G423G|uc010tyz.1_Silent_p.G271G					RecName: Full=Putative HERC2-like protein 3;																		GTCTTTGCCATCCACAAAACA	0.378000													22	104					0	0	0	0
GOLGA8C	729786	broad.mit.edu	37	15	20778048	20778048	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:20778048C>A	uc010tzc.1	+	18	2304	c.1289C>A	c.(1288-1290)CCA>CAA	p.P430Q	uc001ytq.2_5'Flank	NM_001012423	NP_001012423			golgi autoantigen, golgin subfamily a, 8E											skin(1)	1						GCTTGGCCGCCAAGAAGAAGG	0.473000													30	209					4.31634e-10	5.20174e-10	1	0
UBE3A	7337	broad.mit.edu	37	15	25616522	25616522	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:25616522C>A	uc001zaq.2	-	4	808	c.808G>T	c.(808-810)GAC>TAC	p.D270Y	uc001zae.2_Intron|UBE3A_uc001zar.2_Missense_Mutation_p.D247Y|UBE3A_uc001zas.2_Missense_Mutation_p.D267Y|UBE3A_uc001zat.2_Missense_Mutation_p.D247Y	NM_000462	NP_000453	Q05086	UBE3A_HUMAN	ubiquitin protein ligase E3A isoform 2	270					brain development|interspecies interaction between organisms|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		all_cancers(20;3.47e-21)|Breast(32;0.00123)		all cancers(64;2.78e-08)|Epithelial(43;8.85e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0155)|Lung(196;0.0616)		TACGTCAAGTCACATTCCACG	0.368000													35	89					5.04308e-16	6.70825e-16	1	0
PLCB2	5330	broad.mit.edu	37	15	40584575	40584575	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:40584575A>G	uc001zld.2	-	22	2697	c.2396T>C	c.(2395-2397)CTG>CCG	p.L799P	PLCB2_uc001zlc.2_5'Flank|PLCB2_uc010bbo.2_Missense_Mutation_p.L795P|PLCB2_uc010ucm.1_Missense_Mutation_p.L799P	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	799					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		CTTCATCTCCAGGAAGATGAA	0.597000													19	55					0	0	0	0
GANC	2595	broad.mit.edu	37	15	42635316	42635316	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:42635316C>T	uc001zpi.2	+	19	2507	c.2193C>T	c.(2191-2193)GCC>GCT	p.A731A		NM_198141	NP_937784	Q8TET4	GANC_HUMAN	glucosidase, alpha; neutral C	731					carbohydrate metabolic process		carbohydrate binding|maltose alpha-glucosidase activity			central_nervous_system(2)	2		all_cancers(109;3.08e-16)|all_epithelial(112;7.48e-15)|Lung NSC(122;3.08e-09)|all_lung(180;1.48e-08)|Melanoma(134;0.0574)|Colorectal(260;0.153)		GBM - Glioblastoma multiforme(94;1.06e-06)		AACCAAAAGCCACCACAGTTG	0.368000													13	58					0	0	0	0
DUOX1	53905	broad.mit.edu	37	15	45427755	45427755	+	Silent	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:45427755C>G	uc001zus.1	+	7	925	c.579C>G	c.(577-579)TCC>TCG	p.S193S	DUOX1_uc001zut.1_Silent_p.S193S|DUOX1_uc010bee.1_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	193	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		GGAGCTTCTCCAGGGGACAGC	0.721000													2	4					0	0	0	0
CGNL1	84952	broad.mit.edu	37	15	57816874	57816874	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:57816874A>T	uc002aeg.2	+	12	3040	c.2964A>T	c.(2962-2964)GAA>GAT	p.E988D	CGNL1_uc010bfw.2_Missense_Mutation_p.E988D	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	988	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGCTCGCAGAAATGCAAAGAC	0.502000													27	76					0	0	0	0
HERC1	8925	broad.mit.edu	37	15	63904629	63904629	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:63904629C>G	uc002amp.2	-	77	14369	c.14221G>C	c.(14221-14223)GTG>CTG	p.V4741L	HERC1_uc002amo.2_5'Flank	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	4741	HECT.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TACCGCACCACTTTCTTCAAG	0.552000													26	101					0	0	0	0
ITGA11	22801	broad.mit.edu	37	15	68606163	68606163	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:68606163G>A	uc002ari.2	-	23	2923	c.2836C>T	c.(2836-2838)CCC>TCC	p.P946S	ITGA11_uc010bib.2_Missense_Mutation_p.P946S	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	946	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	AAGCGTAAGGGGGCCACGTTG	0.642000													9	30					0	0	0	0
ARNT2	9915	broad.mit.edu	37	15	80762620	80762620	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:80762620C>A	uc002bfr.2	+	4	422	c.256C>A	c.(256-258)CTC>ATC	p.L86I	ARNT2_uc002bfq.2_Missense_Mutation_p.L86I|ARNT2_uc010unm.1_Missense_Mutation_p.L75I|ARNT2_uc002bfs.2_Missense_Mutation_p.L75I	NM_014862	NP_055677	Q9HBZ2	ARNT2_HUMAN	aryl hydrocarbon receptor nuclear translocator	86	Helix-loop-helix motif.				central nervous system development|in utero embryonic development|response to hypoxia		aryl hydrocarbon receptor binding|DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(3)|ovary(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.134)			CATCACGGAGCTCTCCGACAT	0.542000													16	26					2.32078e-09	2.74984e-09	1	0
AKAP13	11214	broad.mit.edu	37	15	86118444	86118444	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:86118444G>A	uc002blv.1	+	6	915	c.745G>A	c.(745-747)GAG>AAG	p.E249K	AKAP13_uc002blt.1_Missense_Mutation_p.E249K|AKAP13_uc002blu.1_Missense_Mutation_p.E249K	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	249					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						GCATCATCGAGAGTTGGACAT	0.433000													45	132					0	0	0	0
ACAN	176	broad.mit.edu	37	15	89398451	89398451	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:89398451C>A	uc010upo.1	+	12	3009	c.2635C>A	c.(2635-2637)CAC>AAC	p.H879N	ACAN_uc010upp.1_Missense_Mutation_p.H879N|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	879					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TGTTTCAGGACACCTTGACTT	0.612000													13	53					4.75885e-15	6.25153e-15	1	0
CHD2	1106	broad.mit.edu	37	15	93528731	93528731	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:93528731C>T	uc002bsp.2	+	26	3816	c.3241C>T	c.(3241-3243)CAG>TAG	p.Q1081*	CHD2_uc002bso.1_Nonsense_Mutation_p.Q1081*	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1081					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			TTCTCAGGCTCAGACAAATGA	0.453000													8	33					0	0	0	0
NR2F2	7026	broad.mit.edu	37	15	96877459	96877459	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:96877459A>T	uc010uri.1	+	2	1821	c.597A>T	c.(595-597)CAA>CAT	p.Q199H	NR2F2_uc002btp.2_Missense_Mutation_p.Q66H|NR2F2_uc010urj.1_Missense_Mutation_p.Q46H|NR2F2_uc010urk.1_Missense_Mutation_p.Q46H	NM_021005	NP_066285	P24468	COT2_HUMAN	nuclear receptor subfamily 2, group F, member 2	199	Interaction with ZFPM2 (By similarity).|Ligand-binding (By similarity).				lipid metabolic process|negative regulation of cyclin-dependent protein kinase activity|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment	nucleus	ligand-regulated transcription factor activity|protein homodimerization activity|retinoic acid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(1)	3	Lung NSC(78;0.0186)|Melanoma(26;0.0195)|all_lung(78;0.0297)		OV - Ovarian serous cystadenocarcinoma(32;0.0856)			TCGGCAGCCAATGCATGCAGC	0.597000													72	286					0	0	0	0
NLRC3	197358	broad.mit.edu	37	16	3614318	3614318	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr16:3614318G>T	uc010btn.2	-	5	1031	c.620C>A	c.(619-621)GCG>GAG	p.A207E		NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	207	NACHT.				I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						GACTGCCACCGCCAGGCTGGG	0.652000													11	18					1.58986e-06	1.73328e-06	1	0
ADCY9	115	broad.mit.edu	37	16	4164621	4164621	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr16:4164621C>T	uc002cvx.2	-	2	1362	c.823G>A	c.(823-825)GGG>AGG	p.G275R		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	275	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						TGCAGGGCCCCGGCTCCGGGC	0.627000													19	18					0	0	0	0
TMEM186	25880	broad.mit.edu	37	16	8890005	8890005	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr16:8890005C>A	uc002cze.2	-	2	480	c.446G>T	c.(445-447)GGC>GTC	p.G149V	PMM2_uc002czf.3_5'Flank|PMM2_uc010uyf.1_5'Flank|PMM2_uc010uyg.1_5'Flank|PMM2_uc010uyh.1_5'Flank|PMM2_uc010buj.2_5'Flank|PMM2_uc010uyi.1_5'Flank|PMM2_uc010uye.1_5'Flank	NM_015421	NP_056236	Q96B77	TM186_HUMAN	transmembrane protein 186	149						integral to membrane|mitochondrion				ovary(1)	1						CTGCCGCCAGCCCCAGAAGTT	0.542000													23	87					5.35356e-11	6.58301e-11	1	0
CACNG3	10368	broad.mit.edu	37	16	24366278	24366278	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr16:24366278C>T	uc002dmf.2	+	3	1620	c.420C>T	c.(418-420)ATC>ATT	p.I140I		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	140	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		GCGCGGGCATCTTTTTTGTCT	0.577000													10	42					0	0	0	0
Unknown	0	broad.mit.edu	37	16	33647227	33647227	+	IGR	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr16:33647227A>T								SLC6A10P (750764 upstream) : MIR1826 (318281 downstream)																							CTGGGCTCTCACTGACTTCCC	0.582000													34	121					0	0	0	0
CDH5	1003	broad.mit.edu	37	16	66426224	66426224	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr16:66426224G>A	uc002eom.3	+	7	1311	c.1155G>A	c.(1153-1155)CAG>CAA	p.Q385Q	CDH5_uc002eon.1_Silent_p.Q385Q	NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	385	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		AGGAAAACCAGAAGAAGCCTC	0.532000													33	92					0	0	0	0
ZFHX3	463	broad.mit.edu	37	16	72991476	72991476	+	Missense_Mutation	SNP	C	A	A	rs146607776		TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr16:72991476C>A	uc002fck.2	-	2	3242	c.2569G>T	c.(2569-2571)GCC>TCC	p.A857S	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	857					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				TCGGCCTCGGCGGGTGAGGGC	0.577000													26	58					8.24728e-16	1.09361e-15	1	0
CNTNAP4	85445	broad.mit.edu	37	16	76532584	76532584	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr16:76532584G>T	uc002feu.1	+	17	2743	c.2358G>T	c.(2356-2358)CAG>CAT	p.Q786H	CNTNAP4_uc002fev.1_Missense_Mutation_p.Q650H|CNTNAP4_uc010chb.1_Missense_Mutation_p.Q713H|CNTNAP4_uc002fex.1_Missense_Mutation_p.Q789H	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	786	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TGCTCTGCCAGGGAGACAGTA	0.398000													8	20					0.000673444	0.000696496	1	0
TP53	7157	broad.mit.edu	37	17	7578262	7578262	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr17:7578262C>G	uc002gim.2	-	6	781	c.587G>C	c.(586-588)CGA>CCA	p.R196P	TP53_uc002gig.1_Missense_Mutation_p.R196P|TP53_uc002gih.2_Missense_Mutation_p.R196P|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R64P|TP53_uc010cng.1_Missense_Mutation_p.R64P|TP53_uc002gii.1_Missense_Mutation_p.R64P|TP53_uc010cnh.1_Missense_Mutation_p.R196P|TP53_uc010cni.1_Missense_Mutation_p.R196P|TP53_uc002gij.2_Missense_Mutation_p.R196P|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Missense_Mutation_p.R103P|TP53_uc002gio.2_Missense_Mutation_p.R64P|TP53_uc010vug.1_Missense_Mutation_p.R157P	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	196	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> L (in sporadic cancers; somatic mutation).|R -> P (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> S (in a sporadic cancer; somatic mutation).|R -> Q (in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R196*(123)|p.R196P(12)|p.0?(7)|p.R196R(5)|p.R196fs*51(4)|p.A189_V197delAPPQHLIRV(4)|p.R196Q(3)|p.K164_P219del(1)|p.I195fs*50(1)|p.P191fs*6(1)|p.I195_G199delIRVEG(1)|p.R196L(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TCCTTCCACTCGGATAAGATG	0.547000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			16	27					0	0	0	0
MYH8	4626	broad.mit.edu	37	17	10299732	10299732	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr17:10299732C>T	uc002gmm.2	-	33	4663	c.4568G>A	c.(4567-4569)GGA>GAA	p.G1523E	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1523	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						AATTTGCTTTCCTCCCTCTGC	0.428000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				7	16					0	0	0	0
HS3ST3A1	9955	broad.mit.edu	37	17	13399973	13399973	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr17:13399973C>T	uc002gob.1	-	2	1560	c.762G>A	c.(760-762)ACG>ACA	p.T254T		NM_006042	NP_006033	Q9Y663	HS3SA_HUMAN	heparan sulfate D-glucosaminyl	254	PAPS and substrate.|Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity			ovary(1)|central_nervous_system(1)	2		all_lung(20;0.114)		UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		ACAGCGTCTGCGTGTAGTCCG	0.647000													13	76					0	0	0	0
ZNHIT3	9326	broad.mit.edu	37	17	34848673	34848673	+	Missense_Mutation	SNP	A	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr17:34848673A>C	uc002hms.1	+	3	206	c.135A>C	c.(133-135)GAA>GAC	p.E45D	ZNHIT3_uc010cus.1_Missense_Mutation_p.E45D|ZNHIT3_uc002hmt.1_RNA|ZNHIT3_uc010cut.1_RNA	NM_004773	NP_004764	Q15649	ZNHI3_HUMAN	thyroid hormone receptor interactor 3	45					regulation of transcription, DNA-dependent	intracellular	metal ion binding|thyroid hormone receptor binding				0		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0188)		GCAACCCTGAAACTCGTCCTG	0.448000													22	87					0	0	0	0
GH2	2689	broad.mit.edu	37	17	61958452	61958452	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr17:61958452G>A	uc002jco.1	-	3	290	c.228C>T	c.(226-228)ACC>ACT	p.T76T	GH2_uc002jcj.2_Silent_p.T76T|CSH2_uc002jck.2_Intron|GH2_uc002jcl.1_Silent_p.T76T|GH2_uc002jcm.1_Silent_p.T76T|GH2_uc002jcn.1_Silent_p.T61T	NM_002059	NP_002050	P01242	SOM2_HUMAN	growth hormone 2 isoform 1	76						extracellular region	hormone activity			upper_aerodigestive_tract(2)|pancreas(1)	3						AGCAGAGGGAGGTCTGGGGGT	0.532000													74	277					0	0	0	0
ABCA10	10349	broad.mit.edu	37	17	67150133	67150133	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr17:67150133G>T	uc010dfa.1	-	33	4683	c.3804C>A	c.(3802-3804)AGC>AGA	p.S1268R	ABCA10_uc010wqs.1_Missense_Mutation_p.S260R|ABCA10_uc010wqt.1_RNA	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	1268	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					CTGATGCTCTGCTGCCTTGTA	0.468000													20	80					1.96895e-08	2.27559e-08	1	0
USH1G	124590	broad.mit.edu	37	17	72916366	72916366	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr17:72916366G>A	uc002jme.1	-	2	748	c.565C>T	c.(565-567)CGG>TGG	p.R189W	USH1G_uc010wro.1_Missense_Mutation_p.R86W	NM_173477	NP_775748	Q495M9	USH1G_HUMAN	Usher syndrome 1G protein	189					equilibrioception|photoreceptor cell maintenance|sensory perception of sound	actin cytoskeleton				skin(2)	2	all_lung(278;0.172)|Lung NSC(278;0.207)					TGCTGCAGCCGGCGGCTCAGG	0.682000													23	51					0	0	0	0
RPTOR	57521	broad.mit.edu	37	17	78899188	78899188	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr17:78899188G>T	uc002jyt.1	+	24	3632	c.2827G>T	c.(2827-2829)GAT>TAT	p.D943Y	RPTOR_uc010wug.1_Missense_Mutation_p.D785Y	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	943					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						CGACGCGGACGATGCTGCTGG	0.577000													20	55					1.40151e-16	1.88203e-16	1	0
CD7	924	broad.mit.edu	37	17	80274611	80274611	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr17:80274611C>A	uc002kel.1	-	2	438	c.329G>T	c.(328-330)GGC>GTC	p.G110V	CD7_uc010din.2_Missense_Mutation_p.G110V|CD7_uc002kem.2_Missense_Mutation_p.W91C|CD7_uc010wvk.1_Missense_Mutation_p.G110V	NM_006137	NP_006128	P09564	CD7_HUMAN	CD7 antigen precursor	110	Ig-like.|Extracellular (Probable).				immune response|T cell activation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|membrane fraction|plasma membrane	receptor activity				0	Breast(20;0.000675)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.249)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0667)			GGTGTAGGTGCCAGTGTCCGA	0.637000													69	290					2.51111e-31	3.78006e-31	1	0
RBBP8	5932	broad.mit.edu	37	18	20572878	20572878	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr18:20572878C>T	uc002ktw.2	+	11	1419	c.1088C>T	c.(1087-1089)CCT>CTT	p.P363L	RBBP8_uc002kty.2_Missense_Mutation_p.P363L|RBBP8_uc002ktz.2_Missense_Mutation_p.P363L|RBBP8_uc002kua.2_Missense_Mutation_p.P363L|RBBP8_uc002ktx.1_Missense_Mutation_p.P363L	NM_002894	NP_002885	Q99708	COM1_HUMAN	retinoblastoma binding protein 8 isoform a	363					cell cycle checkpoint|DNA double-strand break processing involved in repair via single-strand annealing|meiosis|regulation of transcription from RNA polymerase II promoter	nucleus	damaged DNA binding|protein binding|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)|lung(1)|skin(1)	3	all_cancers(21;4.34e-05)|all_epithelial(16;8.3e-07)|Lung NSC(20;0.0107)|Colorectal(14;0.0202)|all_lung(20;0.0291)|Ovarian(20;0.19)		OV - Ovarian serous cystadenocarcinoma(1;0.00196)			AAAACACTCCCTTTTAGCAAC	0.363000								Direct_reversal_of_damage|Homologous_recombination					29	70					0	0	0	0
TAF4B	6875	broad.mit.edu	37	18	23866365	23866365	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr18:23866365C>G	uc002kvu.3	+	7	1981	c.1492C>G	c.(1492-1494)CCT>GCT	p.P498A	TAF4B_uc002kvs.3_RNA|TAF4B_uc002kvt.3_Missense_Mutation_p.P498A	NM_005640	NP_005631	Q92750	TAF4B_HUMAN	TAF4b RNA polymerase II, TATA box binding	498					transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleolus|transcription factor TFIID complex	DNA binding|NF-kappaB binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)|skin(1)	3	all_cancers(21;0.00151)|Lung NSC(5;0.000401)|all_lung(6;0.00115)|Ovarian(20;0.124)		Epithelial(2;9.57e-07)|all cancers(3;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(3;1.96e-05)|LUSC - Lung squamous cell carcinoma(2;0.00594)|Lung(2;0.0267)			ATCTGACAAGCCTGTTATTGG	0.488000													19	76					0	0	0	0
SLC39A6	25800	broad.mit.edu	37	18	33706800	33706800	+	Silent	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr18:33706800T>C	uc010dmy.2	-	2	461	c.171A>G	c.(169-171)CTA>CTG	p.L57L	SLC39A6_uc002kzj.2_Intron	NM_012319	NP_036451	Q13433	S39A6_HUMAN	solute carrier family 39 (zinc transporter),	57	Extracellular (Potential).					integral to membrane|lamellipodium membrane	zinc ion transmembrane transporter activity			ovary(1)|pancreas(1)	2						AAAGCTGTTGTAGATGATATT	0.373000													34	66					0	0	0	0
ELP2	55250	broad.mit.edu	37	18	33750057	33750057	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr18:33750057A>G	uc002kzk.1	+	20	2118	c.2108A>G	c.(2107-2109)GAT>GGT	p.D703G	ELP2_uc010xcg.1_Missense_Mutation_p.D768G|ELP2_uc002kzl.1_RNA|ELP2_uc002kzm.1_Missense_Mutation_p.D677G|ELP2_uc010xch.1_Missense_Mutation_p.D698G|ELP2_uc002kzn.1_Missense_Mutation_p.D633G|ELP2_uc002kzo.1_Missense_Mutation_p.D633G	NM_018255	NP_060725	Q6IA86	ELP2_HUMAN	elongator protein 2	703	WD 12.				regulation of transcription from RNA polymerase II promoter	Golgi apparatus|transcription elongation factor complex				breast(2)|ovary(1)|skin(1)	4						GACTCCACTGATGACTGTATT	0.527000													19	39					0	0	0	0
DCC	1630	broad.mit.edu	37	18	50985774	50985774	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr18:50985774G>C	uc002lfe.1	+	24	4152	c.3565G>C	c.(3565-3567)GTC>CTC	p.V1189L	DCC_uc010dpf.1_Missense_Mutation_p.V824L	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1189	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CCTCACACCAGTCAGCCACAG	0.458000													59	88					0	0	0	0
WDR7	23335	broad.mit.edu	37	18	54424273	54424273	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr18:54424273G>T	uc002lgk.1	+	15	2660	c.2449G>T	c.(2449-2451)GAT>TAT	p.D817Y	WDR7_uc010dpk.1_RNA|WDR7_uc002lgl.1_Missense_Mutation_p.D817Y	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	817										ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		TGAAGTACTGGATGAAGTTTG	0.473000													72	119					1.14856e-27	1.71071e-27	1	0
ATP9B	374868	broad.mit.edu	37	18	77107889	77107889	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr18:77107889C>T	uc002lmx.2	+	24	2816	c.2802C>T	c.(2800-2802)TTC>TTT	p.F934F	ATP9B_uc002lmw.1_Silent_p.F934F|ATP9B_uc002lmz.1_Silent_p.F628F|ATP9B_uc002lna.2_5'UTR|ATP9B_uc002lnb.1_Silent_p.F54F|ATP9B_uc010drb.2_RNA	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	934	Helical; (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		TCGGCCAGTTCGTCATGCACA	0.627000													25	60					0	0	0	0
RNF126	55658	broad.mit.edu	37	19	651671	651671	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:651671C>A	uc010drs.2	-	4	489	c.383G>T	c.(382-384)CGC>CTC	p.R128L	RNF126_uc002lpi.2_5'UTR	NM_194460	NP_919442	Q9BV68	RN126_HUMAN	ring finger protein 126	128							protein binding|zinc ion binding				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGGCGGGCGCGGGGCTGTCG	0.781000													5	4					0.000602214	0.000624355	1	0
PCSK4	54760	broad.mit.edu	37	19	1484088	1484088	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:1484088G>A	uc002ltb.1	-	9	1169	c.1107C>T	c.(1105-1107)CAC>CAT	p.H369H	PCSK4_uc002lsz.2_5'Flank|PCSK4_uc002lta.2_Silent_p.H181H	NM_017573	NP_060043	Q6UW60	PCSK4_HUMAN	proprotein convertase subtilisin/kexin type 4	369	Catalytic (By similarity).				proteolysis	integral to membrane	serine-type endopeptidase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGTGCCCGTGTGCTGGTCTG	0.697000													6	4					0	0	0	0
FBN3	84467	broad.mit.edu	37	19	8168502	8168502	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:8168502T>C	uc002mjf.2	-	38	4904	c.4883A>G	c.(4882-4884)TAC>TGC	p.Y1628C		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1628	EGF-like 25; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GACACAGGTGTAGTTCCCCAG	0.557000													26	57					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	8971730	8971730	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:8971730C>A	uc002mkp.2	-	78	43066	c.42862G>T	c.(42862-42864)GCC>TCC	p.A14288S	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.A1088S|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGAATGAGGCATTCAGGGTC	0.532000													20	51					1.64113e-05	1.76641e-05	1	0
MUC16	94025	broad.mit.edu	37	19	9014654	9014654	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:9014654C>T	uc002mkp.2	-	31	38525	c.38321G>A	c.(38320-38322)CGT>CAT	p.R12774H	MUC16_uc010xki.1_5'Flank	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12776	SEA 5.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGGTCAAGACGGTGGGTGCA	0.567000													9	48					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9020781	9020781	+	Silent	SNP	T	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:9020781T>G	uc002mkp.2	-	20	37525	c.37321A>C	c.(37321-37323)AGA>CGA	p.R12441R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12443	Extracellular (Potential).|SEA 3.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGTCAGTCTGCAGCCAGAG	0.537000													43	163					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9048036	9048036	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:9048036C>T	uc002mkp.2	-	5	33799	c.33595G>A	c.(33595-33597)GCT>ACT	p.A11199T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11201	Thr-rich.|Extracellular (Potential).			A -> G (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGGAGACAGCTAAAGTTGGA	0.453000													6	34					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9088992	9088992	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:9088992G>A	uc002mkp.2	-	1	3027	c.2823C>T	c.(2821-2823)CAC>CAT	p.H941H		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	941	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCCCAGTGAGGTGAGATATTT	0.483000													33	76					0	0	0	0
OLFM2	93145	broad.mit.edu	37	19	9964938	9964938	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:9964938T>C	uc002mmp.2	-	6	1317	c.1289A>G	c.(1288-1290)TAT>TGT	p.Y430C	OLFM2_uc002mmo.2_Missense_Mutation_p.Y352C	NM_058164	NP_477512	O95897	NOE2_HUMAN	olfactomedin 2 precursor	430	Olfactomedin-like.					extracellular region				large_intestine(1)|skin(1)	2						GTTCCAGGTATAGAGGGCGCG	0.572000													30	99					0	0	0	0
EPS15L1	58513	broad.mit.edu	37	19	16504767	16504767	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:16504767G>C	uc002ndz.1	-	18	1967	c.1961C>G	c.(1960-1962)TCA>TGA	p.S654*	EPS15L1_uc002ndx.2_Nonsense_Mutation_p.S654*|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpe.1_Nonsense_Mutation_p.S544*|EPS15L1_uc010xpf.1_Nonsense_Mutation_p.S557*|EPS15L1_uc002nea.1_Nonsense_Mutation_p.S654*|EPS15L1_uc010eah.1_Nonsense_Mutation_p.S656*	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	654	15 X 3 AA repeats of D-P-F.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						TTTACCTGTTGAAGTTGTCTG	0.537000													35	79					0	0	0	0
NCAN	1463	broad.mit.edu	37	19	19349079	19349079	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:19349079C>A	uc002nlz.2	+	11	3367	c.3268C>A	c.(3268-3270)CGC>AGC	p.R1090S	NCAN_uc010ecc.1_Missense_Mutation_p.R654S|NCAN_uc002nma.2_5'Flank	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1090	C-type lectin.				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			GGGCTGTGACCGCGGCTGGCA	0.657000													26	151					1.17739e-12	1.48225e-12	1	0
ZNF536	9745	broad.mit.edu	37	19	30935513	30935513	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:30935513G>C	uc002nsu.1	+	2	1182	c.1044G>C	c.(1042-1044)GAG>GAC	p.E348D	ZNF536_uc010edd.1_Missense_Mutation_p.E348D	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	348	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					TCCGCTGCGAGGTGTGCGGTC	0.652000													49	223					0	0	0	0
TSHZ3	57616	broad.mit.edu	37	19	31767842	31767842	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:31767842C>A	uc002nsy.3	-	2	2922	c.2857G>T	c.(2857-2859)GTG>TTG	p.V953L		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	953	Homeobox; atypical.			VKY->ATA: Does not inhibit interaction with APBB1.	negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					TGGTATTTCACGTTGGCCAGC	0.532000													22	48					4.7796e-09	5.60048e-09	1	0
ZNF420	147923	broad.mit.edu	37	19	37619744	37619744	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:37619744C>T	uc002ofl.2	+	5	2066	c.1851C>T	c.(1849-1851)TGC>TGT	p.C617C		NM_144689	NP_653290	Q8TAQ5	ZN420_HUMAN	zinc finger protein 420	617	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CCTATGAATGCAGAGAATGTA	0.433000													11	41					0	0	0	0
ZNF780B	163131	broad.mit.edu	37	19	40540472	40540472	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:40540472C>A	uc002omu.2	-	5	2359	c.2294G>T	c.(2293-2295)GGC>GTC	p.G765V	ZNF780B_uc002omv.2_Missense_Mutation_p.G617V	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	765	C2H2-type 22; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					AAGGTTTGAGCCACGATTAAA	0.433000													31	67					9.45814e-24	1.394e-23	1	0
PSG8	440533	broad.mit.edu	37	19	43268377	43268377	+	Missense_Mutation	SNP	G	T	T	rs150588080	byFrequency	TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:43268377G>T	uc002ouo.2	-	2	219	c.121C>A	c.(121-123)CAG>AAG	p.Q41K	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc002oui.2_Intron|PSG8_uc002ouh.2_Missense_Mutation_p.Q41K|PSG8_uc010ein.2_Intron|PSG8_uc002ouj.3_5'UTR|PSG8_uc002ouk.3_Intron|PSG8_uc002oul.3_Missense_Mutation_p.Q41K|PSG8_uc002oum.3_Missense_Mutation_p.Q41K|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Missense_Mutation_p.Q41K	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	41	Ig-like V-type.					extracellular region					0		Prostate(69;0.00899)				TTGGTTGGCTGGGCTTCAATC	0.468000													51	203					2.73381e-35	4.15971e-35	1	0
SIX5	147912	broad.mit.edu	37	19	46271390	46271390	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:46271390G>A	uc002pdb.2	-	1	1108	c.713C>T	c.(712-714)ACC>ATC	p.T238I	SIX5_uc002pdc.2_Missense_Mutation_p.T238I	NM_175875	NP_787071	Q8N196	SIX5_HUMAN	SIX homeobox 5	238	Homeobox.					cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00783)|GBM - Glioblastoma multiforme(486;0.0802)|Epithelial(262;0.235)		CGACAGGCCGGTGAGTGTGGC	0.711000													9	25					0	0	0	0
NOVA2	4858	broad.mit.edu	37	19	46444058	46444058	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:46444058G>A	uc002pdv.2	-	4	590	c.542C>T	c.(541-543)ACG>ATG	p.T181M		NM_002516	NP_002507	Q9UNW9	NOVA2_HUMAN	neuro-oncological ventral antigen 2	181	KH 2.					nucleus	RNA binding				0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00245)|GBM - Glioblastoma multiforme(486;0.0782)|Epithelial(262;0.179)		GCCGCTGACCGTCACCACGCG	0.632000													20	40					0	0	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52004699	52004699	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:52004699C>A	uc002pwx.1	-	1	345	c.289G>T	c.(289-291)GGG>TGG	p.G97W	SIGLEC12_uc002pww.1_5'Flank|SIGLEC12_uc010eoy.1_5'UTR	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	97	Ig-like V-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TGTGGGTCCCCAAGGAGGTGG	0.537000													47	208					6.60958e-23	9.67423e-23	1	0
ZNF577	84765	broad.mit.edu	37	19	52376427	52376427	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:52376427G>T	uc010yde.1	-	7	1207	c.816C>A	c.(814-816)TGC>TGA	p.C272*	ZNF577_uc010ydd.1_Intron|ZNF577_uc002pxx.3_Nonsense_Mutation_p.C213*|ZNF577_uc002pxv.2_Nonsense_Mutation_p.C265*|ZNF577_uc002pxw.2_Nonsense_Mutation_p.C206*	NM_032679	NP_116068	Q9BSK1	ZN577_HUMAN	zinc finger protein 577 isoform a	272	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		CACACACACTGCACCCATAGA	0.478000													7	30					8.12818e-05	8.66051e-05	1	0
ZNF845	91664	broad.mit.edu	37	19	53848882	53848882	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:53848882C>T	uc010ydv.1	+	3	256	c.139C>T	c.(139-141)CTG>TTG	p.L47L	ZNF845_uc010ydw.1_Silent_p.L47L	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	47	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCTGGTCTCCCTGGGTGAGGA	0.398000													37	92					0	0	0	0
KIR3DL3	115653	broad.mit.edu	37	19	55246766	55246766	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:55246766C>T	uc002qgu.1	+	6	1014	c.996C>T	c.(994-996)ATC>ATT	p.I332I	KIR2DL3_uc002qgv.2_Intron	NM_153443	NP_703144	Q8N743	KI3L3_HUMAN	killer cell immunoglobulin-like receptor, three	332	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		CAGTGGTCATCATCCCCTTTG	0.483000													26	63					0	0	0	0
PPP1R12C	54776	broad.mit.edu	37	19	55603243	55603243	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:55603243A>T	uc002qix.2	-	20	2211	c.2195T>A	c.(2194-2196)CTG>CAG	p.L732Q	PPP1R12C_uc010yfs.1_Missense_Mutation_p.L657Q|PPP1R12C_uc002qiy.2_Missense_Mutation_p.L730Q	NM_017607	NP_060077	Q9BZL4	PP12C_HUMAN	protein phosphatase 1, regulatory subunit 12C	732	Potential.					cytoplasm				ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0449)		CTCCAGTTCCAGGAGGGCTGG	0.602000													51	193					0	0	0	0
ZNF470	388566	broad.mit.edu	37	19	57088549	57088549	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:57088549C>A	uc002qnl.3	+	6	1428	c.752C>A	c.(751-753)ACA>AAA	p.T251K	ZNF470_uc010etn.2_Intron	NM_001001668	NP_001001668	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	251					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		AGAATTCATACAGGAGAGAAA	0.388000													24	61					1.5548e-18	2.15633e-18	1	0
GTF3C2	2976	broad.mit.edu	37	2	27551754	27551754	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:27551754C>G	uc002rjv.1	-	16	2447	c.2084G>C	c.(2083-2085)GGT>GCT	p.G695A	GTF3C2_uc010eyy.1_Missense_Mutation_p.G150A|GTF3C2_uc002rju.1_Missense_Mutation_p.G706A|GTF3C2_uc002rjw.1_Missense_Mutation_p.G695A	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	695						transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCCTTGAAACCAAGGTAACC	0.393000													22	15					0	0	0	0
FEZ2	9637	broad.mit.edu	37	2	36805971	36805971	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:36805971G>C	uc002rph.2	-	5	719	c.672C>G	c.(670-672)ATC>ATG	p.I224M	FEZ2_uc002rpe.2_Missense_Mutation_p.I53M|FEZ2_uc002rpf.2_Missense_Mutation_p.I53M|FEZ2_uc002rpg.2_Missense_Mutation_p.I224M|FEZ2_uc002rpi.2_Missense_Mutation_p.I79M|FEZ2_uc002rpj.2_Missense_Mutation_p.I224M	NM_005102	NP_005093	Q9UHY8	FEZ2_HUMAN	zygin 2 isoform 1	224	Potential.				axon guidance|signal transduction		protein binding			ovary(1)	1		all_hematologic(82;0.21)				TTTCTTCCAGGATTTCATTTA	0.398000													10	52					0	0	0	0
VRK2	7444	broad.mit.edu	37	2	58373462	58373462	+	Silent	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:58373462A>G	uc002rzo.2	+	15	1780	c.1035A>G	c.(1033-1035)CAA>CAG	p.Q345Q	VRK2_uc010fcb.2_Silent_p.Q345Q|VRK2_uc002rzs.2_Silent_p.Q345Q|VRK2_uc002rzr.2_Silent_p.Q345Q|VRK2_uc010fcc.2_Silent_p.Q227Q|VRK2_uc002rzv.2_Silent_p.Q345Q|VRK2_uc010fcd.2_Silent_p.Q322Q|VRK2_uc002rzp.2_Silent_p.Q345Q|VRK2_uc010ypg.1_Silent_p.Q345Q|VRK2_uc002rzq.2_Silent_p.Q345Q|VRK2_uc002rzu.2_Silent_p.Q345Q|VRK2_uc002rzt.2_Silent_p.Q227Q	NM_001130482	NP_001123954	Q86Y07	VRK2_HUMAN	vaccinia related kinase 2 isoform 2	345						integral to membrane	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						TTGATTCACAAAAGGCTGCAA	0.358000													5	26					0	0	0	0
ACTR2	10097	broad.mit.edu	37	2	65482681	65482681	+	Silent	SNP	A	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:65482681A>C	uc002sdq.2	+	6	803	c.588A>C	c.(586-588)CTA>CTC	p.L196L	ACTR2_uc010yqf.1_Silent_p.L141L|ACTR2_uc002sdp.2_Silent_p.L201L|ACTR2_uc010yqg.1_Silent_p.L144L	NM_005722	NP_005713	P61160	ARP2_HUMAN	actin-related protein 2 isoform b	196					cellular component movement	Arp2/3 protein complex|cell projection|cytoplasm	actin binding|ATP binding				0						TGTACCAGCTACTTCTGTTGC	0.358000													26	118					0	0	0	0
CTNNA2	1496	broad.mit.edu	37	2	80646682	80646682	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:80646682G>T	uc010ysh.1	+	8	1251	c.1246G>T	c.(1246-1248)GAA>TAA	p.E416*	CTNNA2_uc010yse.1_Nonsense_Mutation_p.E416*|CTNNA2_uc010ysf.1_Nonsense_Mutation_p.E416*|CTNNA2_uc010ysg.1_Nonsense_Mutation_p.E416*|CTNNA2_uc010ysi.1_Nonsense_Mutation_p.E48*	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	416					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						GGAAGTGAAAGAATATGCCCA	0.448000													28	70					1.75199e-13	2.23894e-13	1	0
SMYD1	150572	broad.mit.edu	37	2	88387425	88387425	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:88387425G>T	uc002ssr.2	+	3	361	c.359G>T	c.(358-360)GGG>GTG	p.G120V	SMYD1_uc002ssq.1_Intron	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	120					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						GAAGGCACCGGGCTCACGGAG	0.602000													12	66					1.08611e-07	1.22187e-07	1	0
Unknown	0	broad.mit.edu	37	2	90249254	90249254	+	RNA	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:90249254C>G	uc010fhm.2	+	28		c.3797C>G								Parts of antibodies, mostly variable regions.																		AGCTCTTCATCTATTATGCAT	0.507000													77	313					0	0	0	0
Unknown	0	broad.mit.edu	37	2	90259969	90259969	+	RNA	SNP	C	A	A	rs112036184		TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:90259969C>A	uc010fhm.2	+	30		c.3952C>A								Parts of antibodies, mostly variable regions.																		GATGTGTCATCTGGATGACCC	0.443000													37	150					3.43241e-23	5.04136e-23	1	0
GCC2	9648	broad.mit.edu	37	2	109098761	109098761	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:109098761G>T	uc002tec.2	+	11	3353	c.3199G>T	c.(3199-3201)GAT>TAT	p.D1067Y	GCC2_uc002ted.2_Missense_Mutation_p.D966Y	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	1067	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						AATAAATTCTGATAATGAAGA	0.333000													20	69					3.01185e-09	3.53892e-09	1	0
CNTNAP5	129684	broad.mit.edu	37	2	125504927	125504927	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:125504927G>T	uc002tno.2	+	14	2560	c.2196G>T	c.(2194-2196)CAG>CAT	p.Q732H	CNTNAP5_uc010flu.2_Missense_Mutation_p.Q733H	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	732	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TGGACATTCAGCACTTTTGCA	0.493000													40	161					2.00842e-17	2.74052e-17	1	0
THSD7B	80731	broad.mit.edu	37	2	137814025	137814025	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:137814025G>T	uc002tva.1	+	2	82	c.82G>T	c.(82-84)GGA>TGA	p.G28*	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_5'UTR	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CTGTGGTCCCGGAGGAGTCCA	0.493000													17	79					7.41877e-09	8.6689e-09	1	0
LRP1B	53353	broad.mit.edu	37	2	141083346	141083346	+	Missense_Mutation	SNP	C	T	T	rs141655851	byFrequency	TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:141083346C>T	uc002tvj.1	-	80	13297	c.12325G>A	c.(12325-12327)GTC>ATC	p.V4109I		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4109	Extracellular (Potential).|LDL-receptor class B 36.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTGCTGCTGACAGAGACTACT	0.358000										TSP Lung(27;0.18)			17	70					0	0	0	0
UPP2	151531	broad.mit.edu	37	2	158958578	158958578	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:158958578G>A	uc002tzp.2	+	1	197	c.3G>A	c.(1-3)ATG>ATA	p.M1I	UPP2_uc002tzo.2_Missense_Mutation_p.M58I	NM_173355	NP_775491	O95045	UPP2_HUMAN	uridine phosphorylase 2 isoform a	1					nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process|pyrimidine nucleoside salvage|uridine metabolic process	cytosol|type III intermediate filament	uridine phosphorylase activity				0						TAGAGAGAATGGCTTCAGTTA	0.333000													50	145					0	0	0	0
LY75	4065	broad.mit.edu	37	2	160710981	160710981	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:160710981G>T	uc002ubc.3	-	18	2554	c.2485C>A	c.(2485-2487)CTT>ATT	p.L829I	LY75_uc002ubb.3_Missense_Mutation_p.L829I|LY75_uc010fos.2_Missense_Mutation_p.L829I	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	829	Extracellular (Potential).|C-type lectin 5.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TTTAGGTGAAGATCAGCAACA	0.378000													29	78					1.13719e-10	1.38227e-10	1	0
SLC4A10	57282	broad.mit.edu	37	2	162761309	162761309	+	Silent	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:162761309A>G	uc002ubx.3	+	14	1825	c.1641A>G	c.(1639-1641)GGA>GGG	p.G547G	SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Silent_p.G517G|SLC4A10_uc010zcs.1_Silent_p.G528G	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	547	Helical; (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						CTCTCTTTGGAGCATCCATGA	0.398000													34	142					0	0	0	0
FIGN	55137	broad.mit.edu	37	2	164466801	164466801	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:164466801C>A	uc002uck.1	-	3	1852	c.1541G>T	c.(1540-1542)GGA>GTA	p.G514V		NM_018086	NP_060556	Q5HY92	FIGN_HUMAN	fidgetin	514						nuclear matrix	ATP binding|nucleoside-triphosphatase activity			large_intestine(2)|ovary(1)|skin(1)	4						GGCCGTCAGTCCACTGAACGC	0.527000													17	54					3.32936e-07	3.7061e-07	1	0
FASTKD1	79675	broad.mit.edu	37	2	170403042	170403042	+	Nonsense_Mutation	SNP	G	A	A	rs148253352	by1000genomes	TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:170403042G>A	uc002uev.3	-	8	1775	c.1387C>T	c.(1387-1389)CAG>TAG	p.Q463*	FASTKD1_uc002uew.3_RNA|FASTKD1_uc002uex.3_Nonsense_Mutation_p.Q449*	NM_024622	NP_078898	Q53R41	FAKD1_HUMAN	FAST kinase domains 1	463					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(4)	4						TGATCATGCTGAATCCATCTT	0.398000													26	71					0	0	0	0
HOXD12	3238	broad.mit.edu	37	2	176964665	176964665	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:176964665C>A	uc010zev.1	+	1	136	c.136C>A	c.(136-138)CGC>AGC	p.R46S	HOXD12_uc010zew.1_Missense_Mutation_p.R46S	NM_021193	NP_067016	P35452	HXD12_HUMAN	homeobox D12	46				GGQLAALPPISYPRG -> AASLAFPLSPTRA (in Ref. 1; AAF79044).		nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0521)|READ - Rectum adenocarcinoma(9;0.0678)		CTCCTACCCGCGCGGCGCGCT	0.711000													13	41					4.36969e-10	5.22141e-10	1	0
TTN	7273	broad.mit.edu	37	2	179419652	179419652	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:179419652C>G	uc010zfg.1	-	280	81054	c.80830G>C	c.(80830-80832)GAA>CAA	p.E26944Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E20639Q|TTN_uc010zfi.1_Missense_Mutation_p.E20572Q|TTN_uc010zfj.1_Missense_Mutation_p.E20447Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27871							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTTTTAATTCATAGCATCCA	0.433000													13	39					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179429100	179429100	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:179429100G>T	uc010zfg.1	-	275	74279	c.74055C>A	c.(74053-74055)AAC>AAA	p.N24685K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.N18380K|TTN_uc010zfi.1_Missense_Mutation_p.N18313K|TTN_uc010zfj.1_Missense_Mutation_p.N18188K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25612							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTCACTAAAGTTTCCAGCTG	0.378000													20	42					8.34094e-07	9.1642e-07	1	0
TTN	7273	broad.mit.edu	37	2	179439997	179439997	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:179439997G>A	uc010zfg.1	-	275	63382	c.63158C>T	c.(63157-63159)CCC>CTC	p.P21053L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P14748L|TTN_uc010zfi.1_Missense_Mutation_p.P14681L|TTN_uc010zfj.1_Missense_Mutation_p.P14556L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21980							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACAATGACGGGTCTGCTTTC	0.478000													11	35					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179440030	179440030	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:179440030C>T	uc010zfg.1	-	275	63349	c.63125G>A	c.(63124-63126)AGC>AAC	p.S21042N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S14737N|TTN_uc010zfi.1_Missense_Mutation_p.S14670N|TTN_uc010zfj.1_Missense_Mutation_p.S14545N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21969							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTCCCCGCGCTGTTCACTGC	0.507000													8	39					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179453495	179453495	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:179453495G>T	uc010zfg.1	-	253	55477	c.55253C>A	c.(55252-55254)CCA>CAA	p.P18418Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P12113Q|TTN_uc010zfi.1_Missense_Mutation_p.P12046Q|TTN_uc010zfj.1_Missense_Mutation_p.P11921Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19345							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATATTCAGGTGGATTCCAAAC	0.428000													14	51					0.000308642	0.000322359	1	0
TTN	7273	broad.mit.edu	37	2	179579026	179579026	+	Silent	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:179579026G>T	uc010zfg.1	-	88	22967	c.22743C>A	c.(22741-22743)TCC>TCA	p.S7581S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.S4242S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8508							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACCGAGAACGGATAGCGTGG	0.398000													40	170					3.94638e-17	5.35038e-17	1	0
TTN	7273	broad.mit.edu	37	2	179598218	179598218	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:179598218C>G	uc010zfg.1	-	51	12294	c.12070G>C	c.(12070-12072)GAA>CAA	p.E4024Q	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E685Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4951							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGATCAGTTCTGCTCGCTCA	0.458000													78	262					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179616519	179616519	+	Silent	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:179616519A>G	uc002unb.2	-	46	10832	c.10608T>C	c.(10606-10608)ACT>ACC	p.T3536T	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATGAAACCAAGTCATTTCTG	0.393000													32	81					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179632555	179632555	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:179632555G>T	uc010zfg.1	-	40	9626	c.9402C>A	c.(9400-9402)AAC>AAA	p.N3134K	TTN_uc010zfh.1_Missense_Mutation_p.N3088K|TTN_uc010zfi.1_Missense_Mutation_p.N3088K|TTN_uc010zfj.1_Missense_Mutation_p.N3088K|TTN_uc002unb.2_Missense_Mutation_p.N3134K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3134							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGTTGACACGTTGCCTCCTG	0.428000													35	130					9.62906e-15	1.25713e-14	1	0
DNAH7	56171	broad.mit.edu	37	2	196671535	196671535	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:196671535G>A	uc002utj.3	-	54	10206	c.10105C>T	c.(10105-10107)CCT>TCT	p.P3369S		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3369					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CATTCTTCAGGGAAAACCTCA	0.338000													13	54					0	0	0	0
PLCL1	5334	broad.mit.edu	37	2	198953652	198953652	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:198953652C>A	uc010fsp.2	+	3	3077	c.2786C>A	c.(2785-2787)ACT>AAT	p.T929N	PLCL1_uc002uuv.3_Missense_Mutation_p.T850N	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	929					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	TGCCTGTTAACTCTGTCATCT	0.458000													153	421					4.05767e-68	6.33355e-68	1	0
MAP2	4133	broad.mit.edu	37	2	210557856	210557856	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:210557856G>T	uc002vde.1	+	7	1210	c.962G>T	c.(961-963)AGC>ATC	p.S321I	MAP2_uc002vdc.1_Missense_Mutation_p.S321I|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.S317I	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	321					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	CAAGGGGGAAGCTTCACTCTT	0.428000													30	77					1.836e-18	2.538e-18	1	0
EPHA4	2043	broad.mit.edu	37	2	222322667	222322667	+	Silent	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:222322667T>C	uc002vmq.2	-	6	1404	c.1362A>G	c.(1360-1362)AGA>AGG	p.R454R	EPHA4_uc002vmr.2_Silent_p.R454R|EPHA4_uc010zlm.1_Silent_p.R395R|EPHA4_uc010zln.1_Silent_p.R454R	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	454	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CCACACTGTATCTTGTGACTT	0.388000													47	119					0	0	0	0
SLC19A3	80704	broad.mit.edu	37	2	228552143	228552143	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:228552143C>A	uc002vpi.2	-	6	1550	c.1461G>T	c.(1459-1461)GAG>GAT	p.E487D	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Missense_Mutation_p.E483D	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	487	Cytoplasmic (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	TGATATTACTCTCTTCCTCTG	0.408000													30	88					2.80507e-11	3.46943e-11	1	0
ESPNL	339768	broad.mit.edu	37	2	239040215	239040215	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:239040215G>T	uc002vxq.3	+	9	2970	c.2860G>T	c.(2860-2862)GCC>TCC	p.A954S	ESPNL_uc010fyw.2_Missense_Mutation_p.A650S	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	954										pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		CCTGCCTCACGCCGCCGTCCC	0.682000													7	14					0.000157383	0.000166018	1	0
KLHL30	377007	broad.mit.edu	37	2	239056481	239056481	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:239056481C>T	uc002vxr.1	+	5	1136	c.1103C>T	c.(1102-1104)ACC>ATC	p.T368I		NM_198582	NP_940984	Q0D2K2	KLH30_HUMAN	kelch-like 30	386	Kelch 3.										0		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		ACAGGCACCACCCTGGACGTG	0.657000													9	38					0	0	0	0
NKX2-2	4821	broad.mit.edu	37	20	21494085	21494085	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr20:21494085G>A	uc002wsi.2	-	1	580	c.223C>T	c.(223-225)CGC>TGC	p.R75C		NM_002509	NP_002500	O95096	NKX22_HUMAN	NK2 transcription factor related, locus 2	75					brain development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	chromatin binding|core promoter proximal region DNA binding|transcription coactivator activity			pancreas(1)|skin(1)	2						GCCAGCCAGCGCGTGTACGGG	0.682000													8	40					0	0	0	0
CEP250	11190	broad.mit.edu	37	20	34061217	34061217	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr20:34061217G>T	uc002xcm.2	+	14	1899	c.1228G>T	c.(1228-1230)GCA>TCA	p.A410S	CEP250_uc010zve.1_5'UTR|CEP250_uc010zvd.1_RNA	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	410	Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			GCAGCAGCTTGCAGGCTGTCA	0.547000													16	49					3.52763e-06	3.83596e-06	1	0
SLC2A10	81031	broad.mit.edu	37	20	45358126	45358126	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr20:45358126C>T	uc002xsl.2	+	4	1643	c.1546C>T	c.(1546-1548)CGG>TGG	p.R516W		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	516	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CCAGAAGAGACGGTAGGAAGC	0.527000													13	49					0	0	0	0
ZNF831	128611	broad.mit.edu	37	20	57768622	57768622	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr20:57768622C>A	uc002yan.2	+	1	2548	c.2548C>A	c.(2548-2550)CCT>ACT	p.P850T		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	850						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GCCCACGCAGCCTGCCTCTTT	0.637000													26	89					8.88839e-20	1.26592e-19	1	0
SLC17A9	63910	broad.mit.edu	37	20	61588215	61588215	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr20:61588215A>G	uc002yea.3	+	2	342	c.158A>G	c.(157-159)CAG>CGG	p.Q53R	SLC17A9_uc002ydz.3_Missense_Mutation_p.Q47R|SLC17A9_uc011aap.1_Missense_Mutation_p.Q73R	NM_022082	NP_071365	Q9BYT1	S17A9_HUMAN	vesicular nucleotide transporter SLC17A9	53					exocytosis|transmembrane transport	integral to membrane	transporter activity			ovary(1)|skin(1)	2						TCCATGAGCCAGGACTTCGGC	0.652000													19	43					0	0	0	0
C20orf135	140701	broad.mit.edu	37	20	62493542	62493542	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr20:62493542C>T	uc002ygx.1	+	1	977	c.649C>T	c.(649-651)CAG>TAG	p.Q217*		NM_080622	NP_542189	Q9H3Z7	ABHGB_HUMAN	hypothetical protein LOC140701	217							hydrolase activity				0	all_cancers(38;1.77e-12)|all_epithelial(29;3.12e-14)|Lung NSC(23;5.92e-10)|all_lung(23;2.08e-09)					GCCCTTCCCTCAGCACGACGC	0.682000													12	42					0	0	0	0
TRPM2	7226	broad.mit.edu	37	21	45826570	45826570	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr21:45826570C>T	uc002zet.1	+	20	3097	c.2884C>T	c.(2884-2886)CGG>TGG	p.R962W	TRPM2_uc002zeu.1_Missense_Mutation_p.R962W|TRPM2_uc002zew.1_Missense_Mutation_p.R962W|TRPM2_uc010gpt.1_Missense_Mutation_p.R962W|TRPM2_uc002zex.1_Missense_Mutation_p.R748W|TRPM2_uc002zey.1_Missense_Mutation_p.R475W	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	962	Extracellular (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CAACGAGCGCCGGGTGGACTG	0.632000													8	29					0	0	0	0
DIP2A	23181	broad.mit.edu	37	21	47987506	47987506	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr21:47987506G>C	uc002zjo.2	+	38	4870	c.4687G>C	c.(4687-4689)GAC>CAC	p.D1563H	DIP2A_uc011afz.1_Missense_Mutation_p.D1559H|DIP2A_uc002zjs.2_Missense_Mutation_p.D243H|DIP2A_uc002zjt.2_RNA	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a	1563					multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		TGACCAGCTGGACCCCATCTA	0.617000													24	106					0	0	0	0
BID	637	broad.mit.edu	37	22	18222145	18222145	+	Silent	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr22:18222145C>A	uc002znd.1	-	4	503	c.333G>T	c.(331-333)CTG>CTT	p.L111L	BID_uc002znc.1_Silent_p.L157L|BID_uc002zne.1_Silent_p.L15L|BID_uc010gra.1_RNA|BID_uc002znf.1_Silent_p.L15L|BID_uc010grb.1_Silent_p.L111L|BID_uc010grc.1_Silent_p.L15L	NM_001196	NP_001187	P55957	BID_HUMAN	BH3 interacting domain death agonist isoform 2	111					activation of pro-apoptotic gene products|establishment of protein localization in membrane|induction of apoptosis by intracellular signals|induction of apoptosis via death domain receptors|neuron apoptosis|positive regulation of protein homooligomerization|positive regulation of release of cytochrome c from mitochondria|release of cytochrome c from mitochondria	cytosol|membrane fraction|mitochondrial outer membrane	death receptor binding				0		all_epithelial(15;0.198)		Lung(27;0.0419)		TCCTGAGCTGCAGGGCCAGGC	0.662000													8	21					0.00307968	0.0031619	1	0
CHEK2	11200	broad.mit.edu	37	22	29090106	29090106	+	Splice_Site	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr22:29090106C>T	uc003adu.1	-	13	1448	c.1376_splice	c.e13-1	p.A459_splice	CHEK2_uc003ads.1_Splice_Site_p.A238_splice|CHEK2_uc010gvh.1_Splice_Site_p.A368_splice|CHEK2_uc010gvi.1_Intron|CHEK2_uc010gvj.1_Intron|CHEK2_uc003adr.1_Splice_Site|CHEK2_uc010gvk.1_Splice_Site|CHEK2_uc003adt.1_Splice_Site_p.A502_splice|CHEK2_uc003adv.1_Splice_Site_p.A430_splice|CHEK2_uc003adw.1_Splice_Site_p.A459_splice|CHEK2_uc003adx.1_Splice_Site_p.A238_splice|CHEK2_uc003ady.1_Splice_Site_p.A448_splice|CHEK2_uc003adz.1_Splice_Site_p.A263_splice	NM_007194	NP_009125	O96017	CHK2_HUMAN	protein kinase CHK2 isoform a						cell cycle|DNA damage checkpoint|DNA damage response, signal transduction resulting in induction of apoptosis|replicative senescence	PML body	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(17)|stomach(1)|ovary(1)|lung(1)	20						AGGTCCAGAGCTAAAGCAACA	0.448000			F			breast 		Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes	Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|CHEK2-associated_cancer				49	140					0	0	0	0
APOL1	8542	broad.mit.edu	37	22	36661941	36661941	+	Silent	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr22:36661941G>T	uc003apf.2	+	6	1227	c.1059G>T	c.(1057-1059)GTG>GTT	p.V353V	APOL1_uc011amn.1_Silent_p.V230V|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Silent_p.V369V|APOL1_uc011amo.1_Silent_p.V230V|APOL1_uc011amp.1_Silent_p.V353V|APOL1_uc011amq.1_Silent_p.V335V|APOL1_uc010gwx.2_Silent_p.V230V	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	353					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						TCTACCTCGTGTACGAATCAA	0.502000													26	71					1.1804e-14	1.53162e-14	1	0
CARD10	29775	broad.mit.edu	37	22	37891531	37891531	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr22:37891531C>A	uc003asx.1	-	15	2369	c.2366G>T	c.(2365-2367)CGC>CTC	p.R789L	CARD10_uc003ast.1_RNA|CARD10_uc003asu.1_5'Flank|CARD10_uc003asv.1_5'Flank|CARD10_uc011ank.1_Missense_Mutation_p.R107L|CARD10_uc003asw.1_Missense_Mutation_p.R503L|CARD10_uc003asy.1_Missense_Mutation_p.R789L	NM_014550	NP_055365	Q9BWT7	CAR10_HUMAN	caspase recruitment domain protein 10	789					activation of NF-kappaB-inducing kinase activity|protein complex assembly|regulation of apoptosis	CBM complex	receptor signaling complex scaffold activity			upper_aerodigestive_tract(1)|lung(1)|breast(1)|ovary(1)|prostate(1)|kidney(1)	6	Melanoma(58;0.0574)					CACATTACTGCGGGGGCCTCG	0.607000													7	17					0.000157383	0.000166018	1	0
DMC1	11144	broad.mit.edu	37	22	38948700	38948700	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr22:38948700C>A	uc003avz.1	-	7	567	c.392G>T	c.(391-393)GGA>GTA	p.G131V	DMC1_uc011anv.1_Missense_Mutation_p.G131V|DMC1_uc003awa.1_Missense_Mutation_p.G131V	NM_007068	NP_008999	Q14565	DMC1_HUMAN	DMC1 dosage suppressor of mck1 homolog	131	ATP (Potential).				reciprocal meiotic recombination	condensed nuclear chromosome	ATP binding|DNA binding|DNA-dependent ATPase activity|protein binding			ovary(1)	1	Melanoma(58;0.0286)					CTGGGTTTTTCCAGTACGAAA	0.289000								Homologous_recombination					17	51					1.67942e-08	1.94628e-08	1	0
MGAT3	4248	broad.mit.edu	37	22	39884457	39884457	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr22:39884457A>T	uc003axv.3	+	2	1344	c.1105A>T	c.(1105-1107)ATG>TTG	p.M369L	MGAT3_uc010gxy.2_Missense_Mutation_p.M369L	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	369	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					CACGGTGGACATGCTGCAGGC	0.632000													46	138					0	0	0	0
EP300	2033	broad.mit.edu	37	22	41572275	41572275	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr22:41572275G>T	uc003azl.3	+	30	5199	c.4804G>T	c.(4804-4806)GCT>TCT	p.A1602S		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	1602	Binding region for E1A adenovirus.				apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						CCGCCTCATTGCTGGCCCTGC	0.393000			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				65	187					6.43283e-47	9.96735e-47	1	0
PMM1	5372	broad.mit.edu	37	22	41980050	41980050	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr22:41980050G>A	uc003bal.2	-	5	449	c.387C>T	c.(385-387)ATC>ATT	p.I129I		NM_002676	NP_002667	Q92871	PMM1_HUMAN	phosphomannomutase 1	129					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	cytosol	metal ion binding|phosphomannomutase activity			ovary(1)	1						TCCGGAACTCGATGAAGGTTC	0.582000													44	141					0	0	0	0
PHF21B	112885	broad.mit.edu	37	22	45281353	45281353	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr22:45281353G>T	uc003bfn.2	-	12	1481	c.1330C>A	c.(1330-1332)CAC>AAC	p.H444N	PHF21B_uc003bfm.2_Missense_Mutation_p.H240N|PHF21B_uc011aqk.1_Missense_Mutation_p.H390N|PHF21B_uc011aql.1_Missense_Mutation_p.H402N	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	444	Potential.						zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		AGCTGCTGGTGCTCGTTCTGC	0.657000													4	6					0.00024832	0.000259998	1	0
PKDREJ	10343	broad.mit.edu	37	22	46655679	46655679	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr22:46655679G>T	uc003bhh.2	-	1	3541	c.3541C>A	c.(3541-3543)CAC>AAC	p.H1181N		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1181	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GGGTTTTGGTGAAGGCTCTTG	0.473000													44	134					2.64894e-19	3.76008e-19	1	0
NGLY1	55768	broad.mit.edu	37	3	25770736	25770736	+	Missense_Mutation	SNP	A	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:25770736A>C	uc003cdl.2	-	10	1607	c.1499T>G	c.(1498-1500)GTG>GGG	p.V500G	NGLY1_uc010hfg.2_Missense_Mutation_p.V482G|NGLY1_uc003cdm.2_Missense_Mutation_p.V500G|NGLY1_uc011awo.1_Missense_Mutation_p.V458G|NGLY1_uc003cdk.2_RNA	NM_018297	NP_060767	Q96IV0	NGLY1_HUMAN	N-glycanase 1 isoform 1	500	PAW.				glycoprotein catabolic process	cytoplasm	metal ion binding|peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity|protein binding			breast(1)	1						ACGATCTTTCACAATATTGTA	0.323000													19	36					0	0	0	0
GRM2	2912	broad.mit.edu	37	3	51749278	51749278	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:51749278G>T	uc010hlv.2	+	4	1728	c.1489G>T	c.(1489-1491)GCC>TCC	p.A497S	GRM2_uc003dbo.3_5'UTR|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	497	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	CCCCCTGCCCGCCTCTCGCTG	0.637000													6	27					3.59834e-05	3.86319e-05	1	0
ZPLD1	131368	broad.mit.edu	37	3	102189341	102189341	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:102189341G>T	uc003dvs.1	+	16	1919	c.1037G>T	c.(1036-1038)CGG>CTG	p.R346L	ZPLD1_uc003dvt.1_Missense_Mutation_p.R362L|ZPLD1_uc011bhg.1_Missense_Mutation_p.R346L	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	346	Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						ATCATTACTCGGAGTGGTAAG	0.522000													9	51					0.000442599	0.000459999	1	0
CD200	4345	broad.mit.edu	37	3	112064025	112064025	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:112064025C>G	uc003dyw.2	+	4	530	c.386C>G	c.(385-387)TCA>TGA	p.S129*	CD200_uc010hqd.1_5'UTR|CD200_uc003dyx.2_Nonsense_Mutation_p.S104*|CD200_uc003dyy.2_5'UTR|CD200_uc003dyz.2_Nonsense_Mutation_p.S30*	NM_001004196	NP_001004196	P41217	OX2G_HUMAN	CD200 antigen isoform b	104	Ig-like V-type.|Extracellular (Potential).				regulation of immune response	integral to plasma membrane					0		Acute lymphoblastic leukemia(4;1.7e-08)|all_hematologic(4;8.82e-05)				CTCCAAAACTCAACCATCACC	0.493000													21	121					0	0	0	0
ADCY5	111	broad.mit.edu	37	3	123047504	123047504	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:123047504C>A	uc003egh.1	-	6	1792	c.1792G>T	c.(1792-1794)GGC>TGC	p.G598C	ADCY5_uc003egg.1_Missense_Mutation_p.G231C|ADCY5_uc003egi.1_Missense_Mutation_p.G157C	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	598	Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		GCCTTGCCGCCAGCCTCCATG	0.627000											OREG0015742	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	130					7.07758e-08	8.02632e-08	1	0
CCDC37	348807	broad.mit.edu	37	3	126151975	126151975	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:126151975G>C	uc003eiu.1	+	14	1449	c.1350G>C	c.(1348-1350)GAG>GAC	p.E450D	CCDC37_uc010hsg.1_Missense_Mutation_p.E451D	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	450										ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		TCACCAAGGAGGAGGACACAG	0.587000													34	214					0	0	0	0
COL29A1	256076	broad.mit.edu	37	3	130188086	130188086	+	Missense_Mutation	SNP	T	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:130188086T>G	uc010htj.1	+	38	7732	c.7238T>G	c.(7237-7239)ATA>AGA	p.I2413R	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Missense_Mutation_p.I452R	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	2413	VWFA 10.|Nonhelical region.				axon guidance|cell adhesion	collagen					0						ATCTTTGTAATATCTGCTGGC	0.413000													29	40					0	0	0	0
ASTE1	28990	broad.mit.edu	37	3	130744048	130744048	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:130744048G>C	uc003env.1	-	3	545	c.103C>G	c.(103-105)CTT>GTT	p.L35V	NEK11_uc003enx.2_5'Flank|NEK11_uc003eny.2_5'Flank|NEK11_uc003eoa.2_5'Flank|NEK11_uc003enz.2_5'Flank|NEK11_uc010htn.2_5'Flank|NEK11_uc011blk.1_5'Flank|NEK11_uc011bll.1_5'Flank|NEK11_uc003enw.1_5'Flank|NEK11_uc011blm.1_5'Flank|ASTE1_uc010htm.1_Missense_Mutation_p.L35V|ASTE1_uc011blj.1_RNA	NM_014065	NP_054784	Q2TB18	ASTE1_HUMAN	asteroid homolog 1	35					DNA repair		nuclease activity				0						CGGTGGAAAAGAGCATAACCA	0.393000													45	164					0	0	0	0
KY	339855	broad.mit.edu	37	3	134338072	134338072	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:134338072G>T	uc010hty.2	-	8	690	c.628C>A	c.(628-630)CAA>AAA	p.Q210K	KY_uc011blw.1_Missense_Mutation_p.Q210K|KY_uc011blx.1_Missense_Mutation_p.Q189K|KY_uc003eqr.1_5'UTR	NM_178554	NP_848649	Q8NBH2	KY_HUMAN	kyphoscoliosis peptidase	210						cytoskeleton|Z disc	peptidase activity			ovary(2)	2						TTGAAGGCTTGGCGGTCCTTC	0.557000													45	114					1.61004e-24	2.38128e-24	1	0
GK5	256356	broad.mit.edu	37	3	141906560	141906560	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:141906560T>C	uc003euq.1	-	6	736	c.605A>G	c.(604-606)TAT>TGT	p.Y202C	GK5_uc010hus.1_RNA	NM_001039547	NP_001034636	Q6ZS86	GLPK5_HUMAN	glycerol kinase 5 (putative)	202					glycerol metabolic process		ATP binding|glycerol kinase activity				0						TGTGAGCTTATATAACAACCA	0.328000													11	66					0	0	0	0
ATR	545	broad.mit.edu	37	3	142188216	142188216	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:142188216G>A	uc003eux.3	-	38	6637	c.6515C>T	c.(6514-6516)CCT>CTT	p.P2172L	ATR_uc003euy.1_Missense_Mutation_p.P58L	NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	2172	FAT.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TGCTTGTTGAGGATAGGCTAG	0.328000								Other_conserved_DNA_damage_response_genes					27	137					0	0	0	0
TIPARP	25976	broad.mit.edu	37	3	156422631	156422631	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:156422631G>T	uc003fav.2	+	6	1933	c.1685G>T	c.(1684-1686)GGC>GTC	p.G562V	TIPARP_uc003faw.2_Missense_Mutation_p.G562V	NM_015508	NP_056323	Q7Z3E1	PARPT_HUMAN	TCDD-inducible poly(ADP-ribose) polymerase	562	PARP catalytic.						NAD+ ADP-ribosyltransferase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|breast(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			TTTGGACAAGGCAGTTATTTT	0.438000													49	263					6.38213e-41	9.81688e-41	1	0
SLITRK3	22865	broad.mit.edu	37	3	164906145	164906145	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:164906145G>T	uc003fej.3	-	2	2918	c.2474C>A	c.(2473-2475)TCC>TAC	p.S825Y	SLITRK3_uc003fek.2_Missense_Mutation_p.S825Y	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	825	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						GTTAAGCTGGGAGCTGGACAC	0.542000										HNSCC(40;0.11)			43	169					9.84934e-19	1.37048e-18	1	0
SAMD7	344658	broad.mit.edu	37	3	169644505	169644505	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:169644505T>A	uc003fgd.2	+	6	722	c.455T>A	c.(454-456)TTT>TAT	p.F152Y	SAMD7_uc003fge.2_Missense_Mutation_p.F152Y|SAMD7_uc011bpo.1_Missense_Mutation_p.F53Y	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	152										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GACCTGCATTTTCACAGAAGC	0.597000													54	79					0	0	0	0
CCDC39	339829	broad.mit.edu	37	3	180372582	180372582	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:180372582G>T	uc010hxe.2	-	7	1013	c.898C>A	c.(898-900)CAT>AAT	p.H300N	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	300					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			CTAGTTTCATGGTCCTGATAT	0.348000													14	39					4.14922e-12	5.17734e-12	1	0
CHRD	8646	broad.mit.edu	37	3	184105203	184105203	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:184105203A>G	uc003fov.2	+	19	2635	c.2389A>G	c.(2389-2391)ACG>GCG	p.T797A	CHRD_uc003fow.2_Missense_Mutation_p.T427A|CHRD_uc003fox.2_Missense_Mutation_p.T797A|CHRD_uc003foy.2_Missense_Mutation_p.T427A|CHRD_uc010hyc.2_Missense_Mutation_p.T387A|CHRD_uc011brr.1_Missense_Mutation_p.T339A	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	797	VWFC 3.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GGCAGCGGGTACGCGGTGGCA	0.597000													31	42					0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195505836	195505836	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:195505836G>C	uc011bto.1	-	3	12691	c.12231C>G	c.(12229-12231)CAC>CAG	p.H4077Q	MUC4_uc003fva.2_5'Flank|MUC4_uc003fvb.2_5'Flank|MUC4_uc003fvc.2_5'Flank|MUC4_uc003fvd.2_5'Flank|MUC4_uc003fve.2_5'Flank|MUC4_uc010hzr.2_5'Flank|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GAGGGGTGGCGTGACCTGTGG	0.597000													2	6					0	0	0	0
KIT	3815	broad.mit.edu	37	4	55604672	55604672	+	Silent	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:55604672C>A	uc010igr.2	+	21	2967	c.2880C>A	c.(2878-2880)GTC>GTA	p.V960V	KIT_uc010igs.2_Silent_p.V956V	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	960	Cytoplasmic (Potential).				male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity			soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	TCAATTCTGTCGGCAGCACCG	0.527000		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				38	117					5.43694e-19	7.61531e-19	1	0
EXOC1	55763	broad.mit.edu	37	4	56734585	56734585	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:56734585G>A	uc003hbe.1	+	5	657	c.499G>A	c.(499-501)GAA>AAA	p.E167K	EXOC1_uc003hbf.1_Missense_Mutation_p.E167K|EXOC1_uc003hbg.1_Missense_Mutation_p.E167K	NM_018261	NP_060731	Q9NV70	EXOC1_HUMAN	exocyst complex component 1 isoform 1	167	Potential.				exocytosis|protein transport	exocyst	protein binding			ovary(2)|skin(2)|lung(1)|central_nervous_system(1)	6	Glioma(25;0.08)|all_neural(26;0.101)					AAATGCAAGAGAAGAACAGGA	0.398000													15	53					0	0	0	0
LPHN3	23284	broad.mit.edu	37	4	62849144	62849144	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:62849144T>C	uc010ihh.2	+	16	3028	c.2855T>C	c.(2854-2856)TTG>TCG	p.L952S	LPHN3_uc003hcq.3_Missense_Mutation_p.L952S|LPHN3_uc003hct.2_Missense_Mutation_p.L345S	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	939	Helical; Name=3; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TTCTTCTTCTTGGCTGCCTTC	0.433000													11	31					0	0	0	0
ENAM	10117	broad.mit.edu	37	4	71500050	71500050	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:71500050G>A	uc011caw.1	+	6	517	c.236G>A	c.(235-237)GGA>GAA	p.G79E		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	79					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			CCCTTCTTTGGAAACGGTCTC	0.507000													65	209					0	0	0	0
SEC31A	22872	broad.mit.edu	37	4	83776146	83776146	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:83776146T>C	uc003hnf.2	-	17	2082	c.1918A>G	c.(1918-1920)ATT>GTT	p.I640V	SEC31A_uc003hne.2_Missense_Mutation_p.I373V|SEC31A_uc011ccl.1_Missense_Mutation_p.I601V|SEC31A_uc003hnl.2_Missense_Mutation_p.I601V|SEC31A_uc003hng.2_Missense_Mutation_p.I640V|SEC31A_uc003hnh.2_Missense_Mutation_p.I640V|SEC31A_uc003hni.2_Missense_Mutation_p.I640V|SEC31A_uc003hnj.2_Missense_Mutation_p.I601V|SEC31A_uc011ccm.1_Missense_Mutation_p.I635V|SEC31A_uc011ccn.1_Missense_Mutation_p.I640V|SEC31A_uc003hnk.2_Missense_Mutation_p.I601V|SEC31A_uc003hnm.2_Missense_Mutation_p.I640V|SEC31A_uc003hnn.1_Missense_Mutation_p.I640V	NM_001077207	NP_001070675	O94979	SC31A_HUMAN	SEC31 homolog A isoform 1	640					COPII vesicle coating|post-translational protein modification|protein N-linked glycosylation via asparagine|protein transport|response to calcium ion	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|perinuclear region of cytoplasm	calcium-dependent protein binding		SEC31A/JAK2(4)|SEC31A/ALK(3)	haematopoietic_and_lymphoid_tissue(4)|soft_tissue(3)|breast(1)	8		Hepatocellular(203;0.114)				GACTCAACAATCTCTTTCCAG	0.363000													13	37					0	0	0	0
NAP1L5	266812	broad.mit.edu	37	4	89618395	89618395	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:89618395C>G	uc003hrx.2	-	1	629	c.511G>C	c.(511-513)GAT>CAT	p.D171H	HERC3_uc003hrw.1_Intron|HERC3_uc011cdn.1_Intron|HERC3_uc011cdo.1_Intron	NM_153757	NP_715638	Q96NT1	NP1L5_HUMAN	nucleosome assembly protein 1-like 5	171					nucleosome assembly	nucleus	protein binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000181)		GCGTGGGCATCGTCATGTTTG	0.383000													37	144					0	0	0	0
UNC5C	8633	broad.mit.edu	37	4	96469888	96469888	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:96469888G>C	uc003htp.1	-	1	275	c.121C>G	c.(121-123)CAA>GAA	p.Q41E	UNC5C_uc010ilc.1_Missense_Mutation_p.Q41E|UNC5C_uc003htq.2_Missense_Mutation_p.Q41E	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	41	Extracellular (Potential).				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		CCCTTACCTTGGGCGGCGGAG	0.517000													11	25					0	0	0	0
RAP1GDS1	5910	broad.mit.edu	37	4	99342515	99342515	+	Silent	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:99342515G>C	uc003htx.3	+	12	1600	c.1410G>C	c.(1408-1410)CTG>CTC	p.L470L	RAP1GDS1_uc003htw.3_Silent_p.L471L|RAP1GDS1_uc003htv.3_Silent_p.L470L|RAP1GDS1_uc003htz.3_Silent_p.L421L|RAP1GDS1_uc003hty.3_Silent_p.L422L|RAP1GDS1_uc003hua.3_Silent_p.L379L	NM_001100427	NP_001093897	P52306	GDS1_HUMAN	RAP1, GTP-GDP dissociation stimulator 1 isoform	470							binding|GTPase activator activity			ovary(1)|lung(1)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;2.9e-07)|LUSC - Lung squamous cell carcinoma(1;0.0253)|Lung(1;0.0576)		ACAGACTGCTGTCTGCCCTTA	0.428000			T	NUP98	T-ALL								8	40					0	0	0	0
ARHGEF38	54848	broad.mit.edu	37	4	106473961	106473961	+	Silent	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:106473961C>A	uc003hxu.2	+	1	185	c.39C>A	c.(37-39)GTC>GTA	p.V13V		NM_017700	NP_060170	Q9NXL2	ARH38_HUMAN	hypothetical protein LOC54848	13					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|breast(1)	3						AAAACATGGTCACCAAGAAAA	0.488000													13	35					6.72482e-11	8.22139e-11	1	0
INTS12	57117	broad.mit.edu	37	4	106604042	106604042	+	Missense_Mutation	SNP	T	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:106604042T>G	uc003hxw.2	-	8	1495	c.1237A>C	c.(1237-1239)AGT>CGT	p.S413R	INTS12_uc010ilr.2_Missense_Mutation_p.S413R	NM_020395	NP_065128	Q96CB8	INT12_HUMAN	integrator complex subunit 12	413	Ser-rich.				snRNA processing	integrator complex	protein binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;5.12e-07)		GTACTTCCACTAGGTCCTGAT	0.453000													39	120					0	0	0	0
CYP2U1	113612	broad.mit.edu	37	4	108868684	108868684	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:108868684G>A	uc003hyp.2	+	3	1362	c.1279G>A	c.(1279-1281)GAG>AAG	p.E427K	CYP2U1_uc011cfi.1_Missense_Mutation_p.E218K	NM_183075	NP_898898	Q7Z449	CP2U1_HUMAN	cytochrome P450, family 2, subfamily U,	427					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000128)		TATGACCTCAGAGAACACAGG	0.552000													7	36					0	0	0	0
PRDM5	11107	broad.mit.edu	37	4	121719573	121719573	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:121719573C>A	uc003idn.2	-	10	1287	c.1037G>T	c.(1036-1038)CGA>CTA	p.R346L	PRDM5_uc003ido.2_Missense_Mutation_p.R315L|PRDM5_uc010ine.2_Missense_Mutation_p.R315L	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	346					histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						ATTATAGGGTCGTTTTTCTAT	0.333000													15	40					1.67942e-08	1.94628e-08	1	0
C4orf31	79625	broad.mit.edu	37	4	121958675	121958675	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:121958675G>C	uc003idq.1	-	4	978	c.451C>G	c.(451-453)CTT>GTT	p.L151V		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	151											0						TCTGTTGAAAGAAGATCCAAC	0.403000													35	116					0	0	0	0
PCDH10	57575	broad.mit.edu	37	4	134072303	134072303	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:134072303C>A	uc003iha.2	+	1	1834	c.1008C>A	c.(1006-1008)AAC>AAA	p.N336K	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.N336K	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	336	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		TGGGCCCCAACGCCGTGCCTG	0.597000													29	116					2.49991e-28	3.73662e-28	1	0
DCHS2	54798	broad.mit.edu	37	4	155249306	155249306	+	Silent	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:155249306A>G	uc003inw.2	-	12	2592	c.2592T>C	c.(2590-2592)ACT>ACC	p.T864T	DCHS2_uc003inx.2_Silent_p.T1319T	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	864	Cadherin 7.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TTGCAAACACAGTTGTAACCA	0.353000													25	104					0	0	0	0
FSTL5	56884	broad.mit.edu	37	4	162307065	162307065	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:162307065C>A	uc003iqh.2	-	16	2814	c.2378G>T	c.(2377-2379)TGG>TTG	p.W793L	FSTL5_uc003iqi.2_Missense_Mutation_p.W792L|FSTL5_uc010iqv.2_Missense_Mutation_p.W783L|uc010iqu.1_RNA	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	793						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TTTCCGGTTCCAAGGCCATTC	0.468000													34	141					5.04308e-16	6.70825e-16	1	0
ODZ3	55714	broad.mit.edu	37	4	183721323	183721323	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:183721323T>A	uc003ivd.1	+	27	7956	c.7919T>A	c.(7918-7920)GTG>GAG	p.V2640E		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2640	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CAGCAGCGCGTGCGCGACGGC	0.741000													5	16					0	0	0	0
FAT1	2195	broad.mit.edu	37	4	187540161	187540161	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:187540161C>T	uc003izf.2	-	10	7767	c.7579G>A	c.(7579-7581)GTT>ATT	p.V2527I		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2527	Extracellular (Potential).|Cadherin 23.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TGGTAAGTAACGTGACCATAA	0.408000										HNSCC(5;0.00058)			44	124					0	0	0	0
FRG1	2483	broad.mit.edu	37	4	190882995	190882995	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:190882995C>A	uc003izs.2	+	8	839	c.648C>A	c.(646-648)TTC>TTA	p.F216L		NM_004477	NP_004468	Q14331	FRG1_HUMAN	FSHD region gene 1	216					rRNA processing	Cajal body|catalytic step 2 spliceosome|nuclear speck|nucleolus					0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;1.73e-30)|Epithelial(3;5.85e-30)|OV - Ovarian serous cystadenocarcinoma(60;5.56e-15)|BRCA - Breast invasive adenocarcinoma(30;9.14e-06)|Lung(3;3.54e-05)|STAD - Stomach adenocarcinoma(60;8.83e-05)|LUSC - Lung squamous cell carcinoma(40;0.000198)|GBM - Glioblastoma multiforme(59;0.00892)|READ - Rectum adenocarcinoma(43;0.161)		TTCAGAGCTTCCAAGACCACA	0.294000													24	83					4.06085e-26	6.02716e-26	1	0
SEMA5A	9037	broad.mit.edu	37	5	9052111	9052111	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:9052111C>G	uc003jek.2	-	20	3431	c.2719G>C	c.(2719-2721)GAG>CAG	p.E907Q		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	907	Extracellular (Potential).|TSP type-1 7.				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GCTTCACACTCAGACCAGTCC	0.622000													5	23					0	0	0	0
TRIO	7204	broad.mit.edu	37	5	14508202	14508202	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:14508202G>A	uc003jff.2	+	57	8971	c.8965G>A	c.(8965-8967)GTG>ATG	p.V2989M	TRIO_uc003jfg.2_RNA	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	2989	Protein kinase.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					TCTTAGTGGCGTGTCCCCCTT	0.522000													21	77					0	0	0	0
CDH18	1016	broad.mit.edu	37	5	19473641	19473641	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:19473641C>T	uc003jgc.2	-	12	2444	c.2067G>A	c.(2065-2067)AGG>AGA	p.R689R	CDH18_uc003jgd.2_Silent_p.R689R|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	689	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					GTCTGATATCCCTCCGGTACT	0.493000													21	56					0	0	0	0
GUSBP1	728411	broad.mit.edu	37	5	21459851	21459851	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:21459851C>T	uc010iub.2	+	2	170	c.90C>T	c.(88-90)TTC>TTT	p.F30F	GUSBP1_uc011cnn.1_RNA|GUSBP1_uc003jgh.3_RNA|GUSBP1_uc003jgf.3_Silent_p.F30F|GUSBP1_uc003jgg.3_RNA	NR_027028				SubName: Full=Putative uncharacterized protein GUSBL2;												0						TCACGGGGTTCGGTGAGTGAC	0.592000											OREG0016459	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	42					0	0	0	0
CDH10	1008	broad.mit.edu	37	5	24505236	24505236	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:24505236T>C	uc003jgr.1	-	8	1710	c.1378A>G	c.(1378-1380)ATT>GTT	p.I460V	CDH10_uc011cnu.1_Intron	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	460	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TCAGCAGCAATAACAGTAAGA	0.289000										HNSCC(23;0.051)			17	56					0	0	0	0
SERINC5	256987	broad.mit.edu	37	5	79462247	79462247	+	Missense_Mutation	SNP	T	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:79462247T>G	uc003kgj.2	-	7	947	c.818A>C	c.(817-819)TAC>TCC	p.Y273S	SERINC5_uc003kgk.2_Missense_Mutation_p.Y273S|SERINC5_uc003kgl.2_RNA|SERINC5_uc003kgm.2_Missense_Mutation_p.Y273S|SERINC5_uc011ctj.1_Missense_Mutation_p.Y273S	NM_178276	NP_840060	Q86VE9	SERC5_HUMAN	developmentally regulated protein TPO1	273	Helical; (Potential).				phosphatidylserine metabolic process|phospholipid biosynthetic process|positive regulation of transferase activity	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		Lung NSC(167;0.00328)|all_lung(232;0.00356)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;2.93e-46)|Epithelial(54;5.59e-40)|all cancers(79;1.89e-34)		GAAGGTGAGGTAGGTGACATA	0.463000													4	6					0	0	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111519828	111519828	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:111519828G>A	uc003kpv.1	-	18	1781	c.1507C>T	c.(1507-1509)CGG>TGG	p.R503W	EPB41L4A_uc003kpp.1_Missense_Mutation_p.R130W	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	503						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		TTCTCCTGCCGTATTCTGAAA	0.433000													18	43					0	0	0	0
AQPEP	206338	broad.mit.edu	37	5	115298441	115298441	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:115298441G>C	uc003kro.2	+	1	291	c.127G>C	c.(127-129)GTC>CTC	p.V43L	AQPEP_uc003krp.2_RNA|uc003krn.1_5'UTR	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	43	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						CTGCGAGCGCGTCCCACCGTC	0.692000													5	22					0	0	0	0
FAM53C	51307	broad.mit.edu	37	5	137680781	137680781	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:137680781G>T	uc003lcv.2	+	4	874	c.404G>T	c.(403-405)CGG>CTG	p.R135L	FAM53C_uc003lcw.2_Missense_Mutation_p.R135L|FAM53C_uc011cyq.1_Intron|FAM53C_uc011cyr.1_Intron	NM_001135647	NP_001129119	Q9NYF3	FA53C_HUMAN	hypothetical protein LOC51307	135										ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CCGGTGTGGCGGCCCGCCCCC	0.687000													32	82					4.14481e-20	5.92316e-20	1	0
PCDHA6	56142	broad.mit.edu	37	5	140209111	140209111	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:140209111G>T	uc003lho.2	+	1	1462	c.1435G>T	c.(1435-1437)GCG>TCG	p.A479S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.A479S|PCDHA6_uc011dab.1_Missense_Mutation_p.A479S	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	479	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACGGTGTCTGCGCGAGACGC	0.652000													37	93					6.2361e-21	9.00298e-21	1	0
PCDHGA8	9708	broad.mit.edu	37	5	140772655	140772655	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:140772655G>T	uc003lkd.1	+	1	1173	c.275G>T	c.(274-276)CGG>CTG	p.R92L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.R92L	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	92	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGATAGATCGGGAGGAGCTC	0.532000													13	30					4.36969e-10	5.22141e-10	1	0
CYFIP2	26999	broad.mit.edu	37	5	156816422	156816422	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:156816422G>A	uc003lwq.2	+	31	3571	c.3433G>A	c.(3433-3435)GAG>AAG	p.E1145K	CYFIP2_uc011ddn.1_Missense_Mutation_p.E1119K|CYFIP2_uc011ddo.1_Missense_Mutation_p.E949K|CYFIP2_uc003lwr.2_Missense_Mutation_p.E1145K|CYFIP2_uc003lws.2_Missense_Mutation_p.E1145K|CYFIP2_uc003lwt.2_Missense_Mutation_p.E1048K|CYFIP2_uc011ddp.1_Missense_Mutation_p.E879K|CYFIP2_uc003lwv.2_Missense_Mutation_p.E100K	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	1170					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGGAACCAACGAGTTCACAGC	0.597000													10	25					0	0	0	0
ATP10B	23120	broad.mit.edu	37	5	160061553	160061553	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:160061553A>G	uc003lym.1	-	12	2036	c.1189T>C	c.(1189-1191)TTC>CTC	p.F397L	ATP10B_uc003lyp.2_Missense_Mutation_p.F397L|ATP10B_uc011deg.1_Missense_Mutation_p.F441L|ATP10B_uc003lyn.2_5'UTR|ATP10B_uc003lyo.2_Missense_Mutation_p.F369L	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	397	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTGCTCAAGAAGAACACTTGC	0.473000													13	33					0	0	0	0
HFE	3077	broad.mit.edu	37	6	26091192	26091192	+	Missense_Mutation	SNP	G	T	T	rs139523708		TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:26091192G>T	uc003nfx.1	+	2	360	c.200G>T	c.(199-201)CGT>CTT	p.R67L	HFE_uc003nfy.1_Missense_Mutation_p.R44L|HFE_uc010jqe.1_Missense_Mutation_p.R67L|HFE_uc003nfz.1_Intron|HFE_uc003ngd.1_Intron|HFE_uc003nga.1_Missense_Mutation_p.R67L|HFE_uc003ngb.1_Missense_Mutation_p.R67L|HFE_uc003ngc.1_Missense_Mutation_p.R67L|HFE_uc003nge.1_Intron|HFE_uc003ngf.1_Intron	NM_000410	NP_000401	Q30201	HFE_HUMAN	hemochromatosis protein isoform 1 precursor	67	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide antigen via MHC class I|cellular iron ion homeostasis|immune response|iron ion transport|protein complex assembly|receptor-mediated endocytosis	apical part of cell|basal part of cell|cytoplasmic vesicle|early endosome|integral to plasma membrane|MHC class I protein complex|perinuclear region of cytoplasm|recycling endosome	protein binding				0						GAGAGTCGCCGTGTGGAGCCC	0.512000									Hemochromatosis				18	58					1.2644e-06	1.3856e-06	1	0
ZNF192	7745	broad.mit.edu	37	6	28121669	28121669	+	Silent	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:28121669G>C	uc003nkn.1	+	6	1795	c.1611G>C	c.(1609-1611)CTG>CTC	p.L537L	ZNF192_uc010jqx.1_Silent_p.L537L|ZNF192_uc010jqy.1_Silent_p.L350L|ZNF192_uc011dkz.1_Silent_p.L350L	NM_006298	NP_006289	Q15776	ZN192_HUMAN	zinc finger protein 192	537	C2H2-type 8.				viral reproduction	cytoplasm|nucleolus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TTCAACACCTGAGAATTCACA	0.438000													18	48					0	0	0	0
OR2H2	7932	broad.mit.edu	37	6	29556485	29556485	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:29556485C>A	uc003nmr.1	+	1	803	c.764C>A	c.(763-765)GCT>GAT	p.A255D	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	255	Helical; Name=6; (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCAGTCATTGCTGTCTACCTC	0.512000													14	51					3.62473e-10	4.38075e-10	1	0
GLP1R	2740	broad.mit.edu	37	6	39046126	39046126	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:39046126G>T	uc003ooj.3	+	8	912	c.852G>T	c.(850-852)TGG>TGT	p.W284C	GLP1R_uc003ooh.2_RNA|GLP1R_uc003ooi.2_RNA	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor	284	Helical; Name=4; (Potential).				activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	TTGTCCCCTGGGGCATTGTCA	0.602000													27	128					4.23469e-30	6.35203e-30	1	0
UBR2	23304	broad.mit.edu	37	6	42574326	42574326	+	Splice_Site	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:42574326G>A	uc011dur.1	+	7	802	c.802_splice	c.e7-1	p.G268_splice	UBR2_uc003osf.2_Splice_Site_p.G268_splice	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin						cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			TATCTTTACAGGGGCGTAGGT	0.264000													14	80					0	0	0	0
C6orf153	88745	broad.mit.edu	37	6	42993799	42993799	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:42993799G>T	uc003otp.1	+	4	378	c.370G>T	c.(370-372)GAT>TAT	p.D124Y		NM_033112	NP_149103	Q96EU6	RRP36_HUMAN	hypothetical protein LOC88745	124					ribosomal small subunit biogenesis|rRNA processing	nucleolus					0			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			TCGCTTTGATGATCTGTCAGG	0.428000													17	50					1.00905e-13	1.29341e-13	1	0
CRISP2	7180	broad.mit.edu	37	6	49660603	49660603	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:49660603G>C	uc003ozq.2	-	10	871	c.615C>G	c.(613-615)TGC>TGG	p.C205W	CRISP2_uc003ozl.2_Missense_Mutation_p.C205W|CRISP2_uc003ozn.2_Missense_Mutation_p.C205W|CRISP2_uc003ozr.2_Missense_Mutation_p.C205W|CRISP2_uc003ozo.2_Missense_Mutation_p.C205W|CRISP2_uc003ozm.2_Missense_Mutation_p.C240W|CRISP2_uc003ozp.2_Missense_Mutation_p.C205W	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	205						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			CTTGATACTGGCAACTATTGG	0.413000													19	46					0	0	0	0
PHF3	23469	broad.mit.edu	37	6	64422589	64422589	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:64422589G>T	uc003pep.1	+	15	5131	c.5105G>T	c.(5104-5106)TGT>TTT	p.C1702F	PHF3_uc003pen.2_Missense_Mutation_p.C1614F|PHF3_uc011dxs.1_Missense_Mutation_p.C971F	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	1702					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			GAAAAGTTGTGTTCTGCAGAG	0.413000													16	59					4.75885e-15	6.25153e-15	1	0
BAI3	577	broad.mit.edu	37	6	69685162	69685162	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:69685162G>T	uc003pev.3	+	10	2112	c.1664G>T	c.(1663-1665)GGA>GTA	p.G555V	BAI3_uc010kak.2_Missense_Mutation_p.G555V	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	555	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				AGTCTTCATGGAGTGGCCTTC	0.468000													10	53					1.58986e-06	1.73328e-06	1	0
BAI3	577	broad.mit.edu	37	6	70071009	70071009	+	Missense_Mutation	SNP	T	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:70071009T>G	uc003pev.3	+	29	4292	c.3844T>G	c.(3844-3846)TAC>GAC	p.Y1282D	BAI3_uc010kak.2_Missense_Mutation_p.Y1282D|BAI3_uc011dxx.1_Missense_Mutation_p.Y488D	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1282	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GAGAACTGTGTACTTATGTAC	0.413000													20	65					0	0	0	0
SNAP91	9892	broad.mit.edu	37	6	84311131	84311131	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:84311131G>A	uc011dze.1	-	15	1500	c.1183C>T	c.(1183-1185)CCC>TCC	p.P395S	SNAP91_uc011dzd.1_5'UTR|SNAP91_uc003pkb.2_Missense_Mutation_p.P358S|SNAP91_uc003pkc.2_Missense_Mutation_p.P393S|SNAP91_uc003pkd.2_Intron|SNAP91_uc003pka.2_Missense_Mutation_p.P393S	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	395	Ala-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		GCTTCAGAGGGAACAGAGGAA	0.448000													9	21					0	0	0	0
PRDM13	59336	broad.mit.edu	37	6	100061923	100061923	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:100061923A>G	uc003pqg.1	+	4	1673	c.1412A>G	c.(1411-1413)TAC>TGC	p.Y471C		NM_021620	NP_067633	Q9H4Q3	PRD13_HUMAN	PR domain containing 13	471					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(76;1.64e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0128)|Colorectal(196;0.069)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0598)		GAGCTGCTCTACGGCTCACCG	0.637000													24	89					0	0	0	0
GPR6	2830	broad.mit.edu	37	6	110300652	110300652	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:110300652A>T	uc011eaw.1	+	2	517	c.337A>T	c.(337-339)AGC>TGC	p.S113C	GPR6_uc011eav.1_Missense_Mutation_p.S128C|GPR6_uc003ptu.2_Missense_Mutation_p.S113C	NM_005284	NP_005275	P46095	GPR6_HUMAN	G protein-coupled receptor 6	113	Helical; Name=2; (Potential).					integral to plasma membrane					0		all_cancers(87;1.64e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;2.83e-05)|all_lung(197;0.00016)|Lung NSC(302;0.000318)|Colorectal(196;0.0488)		BRCA - Breast invasive adenocarcinoma(108;8.01e-05)|Epithelial(106;8.76e-05)|all cancers(137;0.000197)|OV - Ovarian serous cystadenocarcinoma(136;0.0307)		GCTGGTAGGCAGCCTGGCCAC	0.642000													38	147					0	0	0	0
GPR6	2830	broad.mit.edu	37	6	110300952	110300952	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:110300952C>A	uc011eaw.1	+	2	817	c.637C>A	c.(637-639)CGC>AGC	p.R213S	GPR6_uc011eav.1_Missense_Mutation_p.R228S|GPR6_uc003ptu.2_Missense_Mutation_p.R213S	NM_005284	NP_005275	P46095	GPR6_HUMAN	G protein-coupled receptor 6	213	Extracellular (Potential).					integral to plasma membrane					0		all_cancers(87;1.64e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;2.83e-05)|all_lung(197;0.00016)|Lung NSC(302;0.000318)|Colorectal(196;0.0488)		BRCA - Breast invasive adenocarcinoma(108;8.01e-05)|Epithelial(106;8.76e-05)|all cancers(137;0.000197)|OV - Ovarian serous cystadenocarcinoma(136;0.0307)		CCTGGCAGAGCGCGCCGCCTG	0.697000													9	13					7.48243e-07	8.24236e-07	1	0
TSPYL4	23270	broad.mit.edu	37	6	116573958	116573958	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:116573958C>T	uc003pwn.2	-	1	1304	c.1214G>A	c.(1213-1215)AGC>AAC	p.S405N	DSE_uc011ebf.1_5'Flank|TSPYL4_uc011ebe.1_Missense_Mutation_p.S233N|uc003pwo.1_5'Flank	NM_021648	NP_067680	Q9UJ04	TSYL4_HUMAN	TSPY-like 4	405					nucleosome assembly	nucleus					0		all_cancers(87;0.0144)|all_epithelial(87;0.021)|Colorectal(196;0.234)		all cancers(137;0.045)|OV - Ovarian serous cystadenocarcinoma(136;0.0666)|GBM - Glioblastoma multiforme(226;0.095)|Epithelial(106;0.125)		GGATCTGGCGCTCTCCACTGG	0.532000													3	13					0	0	0	0
LAMA2	3908	broad.mit.edu	37	6	129470220	129470220	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:129470220C>A	uc003qbn.2	+	7	1111	c.1006C>A	c.(1006-1008)CTA>ATA	p.L336I	LAMA2_uc003qbo.2_Missense_Mutation_p.L336I	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	336	Laminin EGF-like 1.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TGGAACTTTTCTAACTAAAAC	0.393000													11	47					0.000978159	0.00100917	1	0
TMEM200A	114801	broad.mit.edu	37	6	130762041	130762041	+	Silent	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:130762041A>T	uc003qca.2	+	3	1345	c.474A>T	c.(472-474)ATA>ATT	p.I158I	TMEM200A_uc010kfh.2_Silent_p.I158I|TMEM200A_uc010kfi.2_Silent_p.I158I|TMEM200A_uc003qcb.2_Silent_p.I158I	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	158	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		CCAAAATCATACACATGAGGG	0.408000													23	72					0	0	0	0
EYA4	2070	broad.mit.edu	37	6	133785942	133785942	+	Silent	SNP	T	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:133785942T>G	uc003qec.3	+	10	1208	c.750T>G	c.(748-750)ACT>ACG	p.T250T	EYA4_uc011ecq.1_Silent_p.T196T|EYA4_uc011ecr.1_Silent_p.T196T|EYA4_uc003qed.3_Silent_p.T250T|EYA4_uc003qee.3_Silent_p.T227T|EYA4_uc011ecs.1_Silent_p.T250T|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	250					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		CATCATCTACTATTTATGCAA	0.284000													9	27					0	0	0	0
KIAA1244	57221	broad.mit.edu	37	6	138584501	138584501	+	Silent	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:138584501G>T	uc003qhu.2	+	12	1881	c.1881G>T	c.(1879-1881)GTG>GTT	p.V627V		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	627	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		GGTCCGACGTGTCAGACATTG	0.542000													60	217					3.33906e-19	4.72382e-19	1	0
NUP43	348995	broad.mit.edu	37	6	150052870	150052870	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:150052870C>A	uc003qmz.2	-	7	849	c.792G>T	c.(790-792)ATG>ATT	p.M264I	NUP43_uc003qmx.3_RNA|NUP43_uc011eee.1_RNA|NUP43_uc011eef.1_Silent_p.V168V	NM_198887	NP_942590	Q8NFH3	NUP43_HUMAN	nucleoporin 43kDa	264	WD 6.				carbohydrate metabolic process|cell division|chromosome segregation|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	protein binding			upper_aerodigestive_tract(1)	1		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;4.71e-13)|GBM - Glioblastoma multiforme(68;0.101)		GAACTTCCCACACTAAGAGAC	0.448000													19	74					4.96729e-08	5.69421e-08	1	0
SYNE1	23345	broad.mit.edu	37	6	152763213	152763213	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:152763213G>C	uc010kiw.2	-	31	4607	c.4005C>G	c.(4003-4005)ATC>ATG	p.I1335M	SYNE1_uc003qot.3_Missense_Mutation_p.I1342M|SYNE1_uc003qou.3_Missense_Mutation_p.I1335M|SYNE1_uc010kjb.1_Missense_Mutation_p.I1318M|SYNE1_uc003qow.2_Missense_Mutation_p.I630M|SYNE1_uc003qox.1_Missense_Mutation_p.I851M	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1335	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTCCTACCTGGATGCGGCGTT	0.577000										HNSCC(10;0.0054)			42	133					0	0	0	0
MLLT4	4301	broad.mit.edu	37	6	168227285	168227285	+	5'Flank	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:168227285C>T	uc003qwd.2	+						MLLT4_uc003qwb.1_5'Flank|MLLT4_uc003qwc.1_5'Flank|C6orf124_uc003qwa.2_RNA	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia						adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		CACCACCCATCGGACCCAGCA	0.672000			T	MLL	AL								14	41					0	0	0	0
MAD1L1	8379	broad.mit.edu	37	7	2265108	2265108	+	Silent	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:2265108C>A	uc003slh.1	-	4	494	c.228G>T	c.(226-228)CTG>CTT	p.L76L	MAD1L1_uc003slf.1_Silent_p.L76L|MAD1L1_uc003slg.1_Silent_p.L76L|MAD1L1_uc010ksh.1_Silent_p.L76L|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Silent_p.L76L	NM_001013836	NP_001013858	Q9Y6D9	MD1L1_HUMAN	MAD1-like 1 protein	76	Potential.				cell division|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase|mitotic prometaphase|mitotic telophase	actin cytoskeleton|centrosome|condensed chromosome kinetochore|cytosol|mitochondrion|nucleus|spindle	protein binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0272)		UCEC - Uterine corpus endometrioid carcinoma (27;0.134)|OV - Ovarian serous cystadenocarcinoma(56;3.63e-14)		TCTTGTGACTCAGCTCCATCT	0.612000													28	93					2.12542e-12	2.65991e-12	1	0
MACC1	346389	broad.mit.edu	37	7	20197937	20197937	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:20197937G>C	uc003sus.3	-	5	2356	c.2047C>G	c.(2047-2049)CAA>GAA	p.Q683E	MACC1_uc010kug.2_Missense_Mutation_p.Q683E	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	683					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						GCTTGAATTTGATCAAAATCT	0.353000													12	40					0	0	0	0
SP4	6671	broad.mit.edu	37	7	21550667	21550667	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:21550667G>A	uc003sva.2	+	6	2316	c.2135G>A	c.(2134-2136)TGT>TAT	p.C712Y	SP4_uc003svb.2_Missense_Mutation_p.C399Y	NM_003112	NP_003103	Q02446	SP4_HUMAN	Sp4 transcription factor	712	C2H2-type 3.				regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(3)|skin(2)	5						TGCCCGGAATGTTCTAAAAGG	0.373000													23	48					0	0	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378538	31378538	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:31378538G>T	uc003tch.2	-	2	698	c.345C>A	c.(343-345)GAC>GAA	p.D115E		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	115	Helix-loop-helix motif.				cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						TTCTTAAGTTGTCCAGAGCGT	0.473000													25	72					1.33986e-20	1.92123e-20	1	0
POM121L12	285877	broad.mit.edu	37	7	53103798	53103798	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:53103798A>T	uc003tpz.2	+	1	450	c.434A>T	c.(433-435)GAG>GTG	p.E145V		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	145											0						GCGCCCCCTGAGCGTCAGGAG	0.577000													13	29					0	0	0	0
ZNF92	168374	broad.mit.edu	37	7	64864433	64864433	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:64864433C>G	uc003ttz.2	+	4	1549	c.1406C>G	c.(1405-1407)ACT>AGT	p.T469S	ZNF92_uc003tua.2_Missense_Mutation_p.T400S|ZNF92_uc010kzu.2_Missense_Mutation_p.T437S|ZNF92_uc003tub.2_Missense_Mutation_p.T393S	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	469	C2H2-type 12.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				TCAACCCTTACTAAACATAAA	0.323000													11	26					0	0	0	0
TYW1B	441250	broad.mit.edu	37	7	72159756	72159756	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:72159756C>A	uc011kej.1	-	14	1586	c.1427G>T	c.(1426-1428)AGC>ATC	p.S476I	TYW1B_uc011keh.1_Missense_Mutation_p.S314I|TYW1B_uc011kei.1_Missense_Mutation_p.S102I	NM_001145440	NP_001138912	Q6NUM6	TYW1B_HUMAN	tRNA-yW synthesizing protein 1 homolog B isoform	476					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity				0						TTTCTTCAGGCTGTCTTTGGT	0.393000													19	59					0.000175454	0.00018462	1	0
SEMA3A	10371	broad.mit.edu	37	7	83610669	83610669	+	Silent	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:83610669A>T	uc003uhz.2	-	14	1935	c.1620T>A	c.(1618-1620)TCT>TCA	p.S540S		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	540					axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						GAGAACATGCAGAACCATCCC	0.448000													13	50					0	0	0	0
STEAP4	79689	broad.mit.edu	37	7	87912279	87912279	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:87912279T>C	uc003ujs.2	-	3	766	c.661A>G	c.(661-663)AGA>GGA	p.R221G	STEAP4_uc010lek.2_Intron|STEAP4_uc003ujt.2_Missense_Mutation_p.R221G	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	221					fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					ATTACGTCTCTTATAACACAA	0.363000													25	72					0	0	0	0
CDK6	1021	broad.mit.edu	37	7	92300836	92300836	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:92300836C>T	uc011khw.1	-	5	963	c.551G>A	c.(550-552)TGG>TAG	p.W184*	CDK6_uc010lez.2_Nonsense_Mutation_p.W184*	NM_001259	NP_001250	Q00534	CDK6_HUMAN	cyclin-dependent kinase 6	184	Protein kinase.				cell dedifferentiation|cell division|G1 phase of mitotic cell cycle|gliogenesis|negative regulation of cell cycle|negative regulation of epithelial cell proliferation|negative regulation of osteoblast differentiation|positive regulation of cell-matrix adhesion|positive regulation of fibroblast proliferation|regulation of erythrocyte differentiation|regulation of gene expression|response to virus	cyclin-dependent protein kinase holoenzyme complex|cytosol|nucleus|ruffle	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			central_nervous_system(1)|skin(1)	2	all_cancers(62;8.72e-12)|all_epithelial(64;3.65e-10)|Breast(17;0.000675)|all_lung(186;0.0392)|Lung NSC(181;0.053)|all_neural(327;0.219)|all_hematologic(106;0.237)		STAD - Stomach adenocarcinoma(4;6.16e-07)|GBM - Glioblastoma multiforme(5;1.2e-06)|all cancers(6;3.1e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			TGCTCTGTACCACAGCGTGAC	0.502000			T	MLLT10	ALL								21	54					0	0	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94539822	94539822	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:94539822G>T	uc003unp.2	+	2	679	c.397G>T	c.(397-399)GGC>TGC	p.G133C	PPP1R9A_uc010lfj.2_Missense_Mutation_p.G133C|PPP1R9A_uc011kif.1_Missense_Mutation_p.G133C|PPP1R9A_uc003unq.2_Missense_Mutation_p.G133C|PPP1R9A_uc011kig.1_Missense_Mutation_p.G133C	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	133	Actin-binding.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			TATGTACGATGGCCCTTCATA	0.403000										HNSCC(28;0.073)			36	135					4.49093e-37	6.858e-37	1	0
SH2B2	10603	broad.mit.edu	37	7	101944494	101944494	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:101944494G>C	uc011kko.1	+	2	834	c.789G>C	c.(787-789)AAG>AAC	p.K263N		NM_020979	NP_066189	O14492	SH2B2_HUMAN	SH2B adaptor protein 2	220	PH.				blood coagulation|insulin receptor signaling pathway|intracellular signal transduction	cytosol|plasma membrane	JAK pathway signal transduction adaptor activity|SH3/SH2 adaptor activity|signal transducer activity				0						AGTGGCAGAAGTGCCGCCTGC	0.677000													6	10					0	0	0	0
RELN	5649	broad.mit.edu	37	7	103123389	103123389	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:103123389C>T	uc003vca.2	-	63	10371	c.10211G>A	c.(10210-10212)CGC>CAC	p.R3404H	RELN_uc010liz.2_Missense_Mutation_p.R3404H	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3404					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TTGCCACCAGCGCAGTAAGAC	0.473000													33	74					0	0	0	0
PODXL	5420	broad.mit.edu	37	7	131191357	131191357	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:131191357G>A	uc003vqw.3	-	6	1488	c.1230C>T	c.(1228-1230)GTC>GTT	p.V410V	PODXL_uc003vqx.3_Silent_p.V378V	NM_001018111	NP_001018121	O00592	PODXL_HUMAN	podocalyxin-like isoform 1 precursor	410	Extracellular (Potential).				cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle				breast(2)|pancreas(1)	3	Melanoma(18;0.162)					TGATTTCTTTGACGACCACGG	0.582000											OREG0018320	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	52	172					0	0	0	0
UBN2	254048	broad.mit.edu	37	7	138964071	138964071	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:138964071A>G	uc011kqr.1	+	13	2032	c.2032A>G	c.(2032-2034)AAA>GAA	p.K678E		NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	678										ovary(1)|skin(1)	2						TAGGGCAAAGAAAAAGGTGAT	0.284000													19	47					0	0	0	0
OR2F2	135948	broad.mit.edu	37	7	143632858	143632858	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:143632858C>A	uc011ktv.1	+	1	533	c.533C>A	c.(532-534)TCC>TAC	p.S178Y		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					GATCACATATCCTGTGAACTC	0.498000													24	90					9.39395e-14	1.20779e-13	1	0
ZNF398	57541	broad.mit.edu	37	7	148876806	148876806	+	Silent	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:148876806G>T	uc003wfl.2	+	6	2117	c.1842G>T	c.(1840-1842)GGG>GGT	p.G614G	ZNF398_uc011kul.1_Silent_p.G443G|ZNF398_uc011kum.1_Silent_p.G619G	NM_170686	NP_733787	Q8TD17	ZN398_HUMAN	zinc finger 398 isoform a	614					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00143)			TCATAACTGGGCTTGAAACTT	0.552000													10	39					7.48243e-07	8.24236e-07	1	0
NOS3	4846	broad.mit.edu	37	7	150710899	150710899	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:150710899G>A	uc003wif.2	+	26	3639	c.3343G>A	c.(3343-3345)GGC>AGC	p.G1115S	NOS3_uc011kuy.1_Missense_Mutation_p.G909S|ATG9B_uc003wig.3_RNA|ATG9B_uc011kvc.1_3'UTR	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	1115	NADP (By similarity).				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	GTTTGTCTGCGGCGATGTTAC	0.677000													7	32					0	0	0	0
Unknown	0	broad.mit.edu	37	7	152142789	152142789	+	IGR	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:152142789C>A								FABP5L3 (2691 upstream) : LOC100128822 (18420 downstream)																							CCACTGCCATCCTCAGGGCCC	0.617000													19	86					2.4624e-09	2.90138e-09	1	0
PTPRN2	5799	broad.mit.edu	37	7	157475424	157475424	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:157475424G>A	uc003wno.2	-	13	2115	c.1994C>T	c.(1993-1995)GCC>GTC	p.A665V	PTPRN2_uc003wnp.2_Missense_Mutation_p.A648V|PTPRN2_uc003wnq.2_Missense_Mutation_p.A636V|PTPRN2_uc003wnr.2_Missense_Mutation_p.A627V|PTPRN2_uc011kwa.1_Missense_Mutation_p.A688V	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	665	Cytoplasmic (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		TACCTGGTAGGCGGCAGTGGC	0.557000													53	180					0	0	0	0
MYOM2	9172	broad.mit.edu	37	8	2054178	2054178	+	Missense_Mutation	SNP	G	A	A	rs140995511		TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:2054178G>A	uc003wpx.3	+	22	3019	c.2881G>A	c.(2881-2883)GTG>ATG	p.V961M	MYOM2_uc011kwi.1_Missense_Mutation_p.V386M	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	961	Ig-like C2-type 3.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		AATCGAAACCGTGGGGGATCA	0.448000													19	78					0	0	0	0
CSMD1	64478	broad.mit.edu	37	8	2886890	2886890	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:2886890G>T	uc011kwk.1	-	51	8199	c.7809C>A	c.(7807-7809)TGC>TGA	p.C2603*	CSMD1_uc011kwj.1_Nonsense_Mutation_p.C1932*|CSMD1_uc010lrg.2_Nonsense_Mutation_p.C671*	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2603	Extracellular (Potential).|Sushi 16.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CATTGGCCTGGCACCGCAGGA	0.532000													9	28					5.50884e-06	5.97497e-06	1	0
DLC1	10395	broad.mit.edu	37	8	13259101	13259101	+	Missense_Mutation	SNP	G	A	A	rs144283917		TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:13259101G>A	uc003wwm.2	-	3	1495	c.1051C>T	c.(1051-1053)CGG>TGG	p.R351W	DLC1_uc003wwn.2_Missense_Mutation_p.R351W|DLC1_uc011kxy.1_Missense_Mutation_p.R351W	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	351					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						GAGTCCAGCCGCGCCCTATCT	0.448000													22	85					0	0	0	0
Unknown	0	broad.mit.edu	37	8	26237002	26237002	+	RNA	SNP	A	G	G	rs3205793		TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:26237002A>G	uc003xew.2	-	2		c.2947T>C								Homo sapiens cDNA clone IMAGE:4826633.																		TGGCTATACCACATCATCATA	0.368000													21	33					0	0	0	0
STMN4	81551	broad.mit.edu	37	8	27099981	27099981	+	Silent	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:27099981C>A	uc003xfk.2	-	3	156	c.42G>T	c.(40-42)CCG>CCT	p.P14P	STMN4_uc003xfj.2_Silent_p.P14P|STMN4_uc011lai.1_Silent_p.P14P|STMN4_uc011laj.1_Silent_p.P5P|STMN4_uc011lak.1_Silent_p.P14P|STMN4_uc010luo.2_Silent_p.P14P			Q9H169	STMN4_HUMAN	RecName: Full=Stathmin-4; AltName: Full=Stathmin-like protein B3;          Short=RB3;	14					intracellular signal transduction					large_intestine(1)|pancreas(1)	2		Ovarian(32;0.00167)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0214)|Epithelial(17;9.82e-10)|Colorectal(74;0.142)		AGGACACCAGCGGGAGCTCCT	0.567000													10	57					0.000442599	0.000459999	1	0
UNC5D	137970	broad.mit.edu	37	8	35542108	35542108	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:35542108G>A	uc003xjr.1	+	6	1088	c.760G>A	c.(760-762)GGC>AGC	p.G254S	UNC5D_uc003xjs.1_Missense_Mutation_p.G249S|UNC5D_uc003xjt.1_Missense_Mutation_p.G23S	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	254	TSP type-1 1.|Extracellular (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		AGTGAATGGAGGCTGGTCTTC	0.418000													28	87					0	0	0	0
UNC5D	137970	broad.mit.edu	37	8	35583803	35583803	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:35583803G>A	uc003xjr.1	+	10	1765	c.1437G>A	c.(1435-1437)TCG>TCA	p.S479S	UNC5D_uc003xjs.1_Silent_p.S474S|UNC5D_uc003xju.1_Silent_p.S55S|UNC5D_uc003xjt.1_Silent_p.S237S	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	479	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		ACCCTTTGTCGGACATCAAAG	0.522000													6	26					0	0	0	0
ADAM18	8749	broad.mit.edu	37	8	39587436	39587436	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:39587436G>C	uc003xni.2	+	20	2197	c.2197G>C	c.(2197-2199)GAA>CAA	p.E733Q	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.E709Q	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	733	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			CGTTGTATCAGAAAGCGATGA	0.323000													22	71					0	0	0	0
ANK1	286	broad.mit.edu	37	8	41585479	41585479	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:41585479C>T	uc003xok.2	-	4	358	c.274G>A	c.(274-276)GAG>AAG	p.E92K	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.E92K|ANK1_uc003xoj.2_Missense_Mutation_p.E92K|ANK1_uc003xol.2_Missense_Mutation_p.E92K|ANK1_uc003xom.2_Missense_Mutation_p.E125K	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	92	89 kDa domain.|ANK 2.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CGGACCACCTCATCCTGCCCG	0.602000													21	101					0	0	0	0
CHRNA6	8973	broad.mit.edu	37	8	42620288	42620288	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:42620288G>C	uc003xpj.2	-	2	185	c.139C>G	c.(139-141)CAG>GAG	p.Q47E	CHRNA6_uc011lcw.1_Missense_Mutation_p.Q47E	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	47	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			CTGATGAACTGGTTGTAATGA	0.547000													41	148					0	0	0	0
OPRK1	4986	broad.mit.edu	37	8	54141939	54141939	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:54141939C>A	uc003xrh.1	-	3	1436	c.1061G>T	c.(1060-1062)CGG>CTG	p.R354L	OPRK1_uc003xri.1_Missense_Mutation_p.R354L|OPRK1_uc010lyc.1_Missense_Mutation_p.R265L	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	354	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	AGTGCTCTGCCGCTCCATCCT	0.483000													17	56					2.35188e-11	2.91744e-11	1	0
RP1	6101	broad.mit.edu	37	8	55534123	55534123	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:55534123C>T	uc003xsd.1	+	2	745	c.597C>T	c.(595-597)TAC>TAT	p.Y199Y	RP1_uc011ldy.1_Silent_p.Y199Y	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	199	Doublecortin 2.				axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TCAAGCTGTACGCTACGGACG	0.577000													57	190					0	0	0	0
SLC7A13	157724	broad.mit.edu	37	8	87242276	87242276	+	Silent	SNP	A	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:87242276A>G	uc003ydq.1	-	1	329	c.231T>C	c.(229-231)AGT>AGC	p.S77S	SLC7A13_uc003ydr.1_Silent_p.S77S	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	77	Cytoplasmic (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						ATTGAGCTCCACTGCATGGGA	0.493000													12	30					0	0	0	0
MMP16	4325	broad.mit.edu	37	8	89068364	89068364	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:89068364C>T	uc003yeb.3	-	8	1647	c.1365G>A	c.(1363-1365)AAG>AAA	p.K455K		NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	455	Extracellular (Potential).|Hemopexin-like 3.				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						ACCTGTCTCCCTTGAAGAAAT	0.418000													23	105					0	0	0	0
RUNX1T1	862	broad.mit.edu	37	8	92998475	92998475	+	Silent	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:92998475G>T	uc003yfd.2	-	8	1240	c.1156C>A	c.(1156-1158)CGG>AGG	p.R386R	RUNX1T1_uc003yfc.1_Silent_p.R359R|RUNX1T1_uc003yfe.1_Silent_p.R349R|RUNX1T1_uc010mao.2_Silent_p.R359R|RUNX1T1_uc011lgi.1_Silent_p.R397R|RUNX1T1_uc010man.1_5'UTR|RUNX1T1_uc003yfb.1_Silent_p.R349R	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	386			R -> W (in a colorectal cancer sample; somatic mutation).		generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.R349W(1)		lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			AATTCTTCCCGGTCTGCTTCT	0.498000													28	116					1.16021e-09	1.37856e-09	1	0
POP1	10940	broad.mit.edu	37	8	99152363	99152363	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:99152363C>T	uc003yij.3	+	10	1520	c.1420C>T	c.(1420-1422)CCT>TCT	p.P474S	POP1_uc011lgv.1_Missense_Mutation_p.P474S|POP1_uc003yik.2_Missense_Mutation_p.P474S	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	474					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			CTGTAAGAAACCTGACAGCGT	0.488000													8	37					0	0	0	0
RIMS2	9699	broad.mit.edu	37	8	105160975	105160975	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:105160975G>A	uc003yls.2	+	23	3528	c.3287G>A	c.(3286-3288)GGC>GAC	p.G1096D	RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Missense_Mutation_p.G1085D|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GGCACCTTGGGCACCAGTGGC	0.532000										HNSCC(12;0.0054)			22	57					0	0	0	0
PLEC	5339	broad.mit.edu	37	8	144993365	144993365	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:144993365G>A	uc003zaf.1	-	32	11205	c.11035C>T	c.(11035-11037)CCA>TCA	p.P3679S	PLEC_uc003zab.1_Missense_Mutation_p.P3542S|PLEC_uc003zac.1_Missense_Mutation_p.P3546S|PLEC_uc003zad.2_Missense_Mutation_p.P3542S|PLEC_uc003zae.1_Missense_Mutation_p.P3510S|PLEC_uc003zag.1_Missense_Mutation_p.P3520S|PLEC_uc003zah.2_Missense_Mutation_p.P3528S|PLEC_uc003zaj.2_Missense_Mutation_p.P3569S	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3679	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CCTTTCAGTGGCAGAAGGCGC	0.592000													70	172					0	0	0	0
LINGO2	158038	broad.mit.edu	37	9	27949577	27949577	+	Missense_Mutation	SNP	A	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr9:27949577A>C	uc003zqu.1	-	2	1287	c.1093T>G	c.(1093-1095)TGG>GGG	p.W365G	LINGO2_uc010mjf.1_Missense_Mutation_p.W365G|LINGO2_uc003zqv.1_Missense_Mutation_p.W365G	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	365	LRRCT.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		TGCAAGATCCAGAGAAGGCGG	0.547000													8	27					0	0	0	0
PRKACG	5568	broad.mit.edu	37	9	71628059	71628059	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr9:71628059G>A	uc004agy.2	-	1	981	c.950C>T	c.(949-951)CCG>CTG	p.P317L		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	317	AGC-kinase C-terminal.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						TGTGTACTTCGGGATGAAGGG	0.532000													21	62					0	0	0	0
Unknown	0	broad.mit.edu	37	9	82006510	82006510	+	IGR	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr9:82006510G>T								None (None upstream) : TLE4 (180368 downstream)																							GCCTGACATCGCTTACCAGGA	0.607000													10	35					3.86212e-05	4.12545e-05	1	0
FLJ46321	389763	broad.mit.edu	37	9	84607188	84607188	+	Silent	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr9:84607188C>A	uc004amn.2	+	4	1850	c.1803C>A	c.(1801-1803)ATC>ATA	p.I601I		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	601						integral to membrane					0						TGATTAGGATCTGTGGAGTGT	0.498000													17	83					2.32416e-17	3.16115e-17	1	0
RASEF	158158	broad.mit.edu	37	9	85611940	85611940	+	Missense_Mutation	SNP	A	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr9:85611940A>C	uc004amo.1	-	14	2168	c.1907T>G	c.(1906-1908)GTA>GGA	p.V636G		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	636					protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						AATCATATCTACCCATTCTCG	0.368000													17	54					0	0	0	0
Unknown	0	broad.mit.edu	37	9	90746048	90746048	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr9:90746048A>T	uc011lti.1	-	4	1933	c.1904T>A	c.(1903-1905)CTT>CAT	p.L635H						SubName: Full=cDNA FLJ59639;																		AAGGAAGGAAAGCACCTGGGC	0.567000													55	157					0	0	0	0
HIATL1	84641	broad.mit.edu	37	9	97218571	97218571	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr9:97218571C>A	uc004aur.2	+	10	1347	c.1078C>A	c.(1078-1080)CCG>ACG	p.P360T	HIATL1_uc011luh.1_Intron	NM_032558	NP_115947	Q5SR56	HIAL1_HUMAN	hippocampus abundant transcript-like 1	360	Helical; (Potential).				transmembrane transport	integral to membrane|plasma membrane	protein binding|transporter activity			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				CATCACGTTTCCGGCAATCAG	0.577000													34	116					5.43694e-19	7.61531e-19	1	0
NTNG2	84628	broad.mit.edu	37	9	135073847	135073847	+	Silent	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr9:135073847G>A	uc004cbh.2	+	3	1484	c.708G>A	c.(706-708)CGG>CGA	p.R236R		NM_032536	NP_115925	Q96CW9	NTNG2_HUMAN	netrin G2 precursor	236	Laminin N-terminal.				axonogenesis	anchored to plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(145;1.23e-05)|Epithelial(140;0.000173)		TCTACACGCGGCTGGAGAGCG	0.667000													36	107					0	0	0	0
RXRA	6256	broad.mit.edu	37	9	137293688	137293688	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr9:137293688C>A	uc004cfb.2	+	2	401	c.239C>A	c.(238-240)CCC>CAC	p.P80H	RXRA_uc004cfa.1_Silent_p.A130A	NM_002957	NP_002948	P19793	RXRA_HUMAN	retinoid X receptor, alpha	80	Modulating (By similarity).				cellular lipid metabolic process|cholesterol metabolic process|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to retinoic acid|vitamin metabolic process	nuclear chromatin|nucleoplasm	enzyme binding|ligand-regulated transcription factor activity|protein heterodimerization activity|retinoic acid-responsive element binding|retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|transcription coactivator activity|vitamin D receptor binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(145;4.66e-08)|Epithelial(140;6.72e-08)|all cancers(34;2.22e-07)	Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)	ATGTCGGTGCCCACCACACCC	0.498000													24	99					4.72057e-08	5.44088e-08	1	0
ANAPC2	29882	broad.mit.edu	37	9	140074693	140074693	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr9:140074693C>G	uc004clr.1	-	10	1903	c.1830G>C	c.(1828-1830)GAG>GAC	p.E610D	ANAPC2_uc004clq.1_Missense_Mutation_p.E466D	NM_013366	NP_037498	Q9UJX6	ANC2_HUMAN	anaphase-promoting complex subunit 2	610					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|cyclin catabolic process|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of synapse maturation|positive regulation of synaptic plasticity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|regulation of cyclin-dependent protein kinase activity	anaphase-promoting complex|cytosol|nucleoplasm	ubiquitin protein ligase binding|ubiquitin-protein ligase activity			ovary(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.000858)		CCTCGGGGACCTCCAGCTTCT	0.612000													20	76					0	0	0	0
SFRS17A	8227	broad.mit.edu	37	X	1720074	1720074	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:1720074G>T	uc004cqa.2	+	5	1871	c.1675G>T	c.(1675-1677)GGC>TGC	p.G559C	SFRS17A_uc004cqb.2_RNA|ASMT_uc004cqd.2_Intron	NM_005088	NP_005079	Q02040	AK17A_HUMAN	DNA segment on chromosome X and Y (unique) 155	559					B cell activation|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|signal transduction	nuclear speck|spliceosomal complex	nucleotide binding|protein binding|RNA binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				ACAGCCCAAGGGCATCCCTGC	0.647000													26	85					5.77227e-19	8.05832e-19	1	0
MAGEB18	286514	broad.mit.edu	37	X	26157626	26157626	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:26157626C>T	uc004dbq.1	+	2	711	c.524C>T	c.(523-525)GCC>GTC	p.A175V		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	175	MAGE.						protein binding			central_nervous_system(1)	1						CACTACTATGCCTTTTTCAGC	0.448000													4	5					0	0	0	0
FAM47B	170062	broad.mit.edu	37	X	34961286	34961286	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:34961286C>A	uc004ddi.1	+	1	356	c.338C>A	c.(337-339)GCA>GAA	p.A113E		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	113										ovary(3)|breast(1)	4						GTACAGCCAGCACGGAAGGCG	0.522000													18	31					4.96729e-08	5.69421e-08	1	0
PLP2	5355	broad.mit.edu	37	X	49029611	49029611	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:49029611A>T	uc004dmx.2	+	2	307	c.232A>T	c.(232-234)ATC>TTC	p.I78F		NM_002668	NP_002659	Q04941	PLP2_HUMAN	proteolipid protein 2 (colonic	78	MARVEL.				chemotaxis|cytokine-mediated signaling pathway	endoplasmic reticulum membrane|integral to membrane|membrane fraction|plasma membrane	chemokine binding|ion transmembrane transporter activity				0						GATACCATTCATCAACTGGCC	0.527000													11	22					0	0	0	0
FAM123B	139285	broad.mit.edu	37	X	63411371	63411371	+	Missense_Mutation	SNP	T	C	C	rs144896730	byFrequency	TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:63411371T>C	uc004dvo.2	-	2	2069	c.1796A>G	c.(1795-1797)TAT>TGT	p.Y599C		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	599					Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						CTCTCGAGTATAGGCCTCCCT	0.632000													4	20					0	0	0	0
HEPH	9843	broad.mit.edu	37	X	65420534	65420534	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:65420534G>T	uc011moz.1	+	12	2086	c.2026G>T	c.(2026-2028)GGT>TGT	p.G676C	HEPH_uc004dwn.2_Missense_Mutation_p.G676C|HEPH_uc004dwo.2_Missense_Mutation_p.G406C|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Missense_Mutation_p.G676C|HEPH_uc010nks.2_5'Flank	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	673	Plastocyanin-like 4.|Extracellular (Potential).				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						CATGAGGAAGGGTGCAGCTAT	0.557000													14	21					1.15088e-07	1.2913e-07	1	0
HEPH	9843	broad.mit.edu	37	X	65476077	65476077	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:65476077G>T	uc011moz.1	+	17	2870	c.2810G>T	c.(2809-2811)TGG>TTG	p.W937L	HEPH_uc004dwn.2_Missense_Mutation_p.W937L|HEPH_uc004dwo.2_Missense_Mutation_p.W667L|HEPH_uc010nkr.2_Missense_Mutation_p.W745L|HEPH_uc011mpa.1_Missense_Mutation_p.W937L|HEPH_uc010nks.2_Missense_Mutation_p.W226L	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	934	Extracellular (Potential).|Plastocyanin-like 6.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						AATAAGTCTTGGTATTTGGAG	0.453000													26	36					1.16021e-09	1.37856e-09	1	0
AR	367	broad.mit.edu	37	X	66931443	66931443	+	Silent	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:66931443C>T	uc004dwu.1	+	4	3200	c.2085C>T	c.(2083-2085)CCC>CCT	p.P695P	AR_uc004dwv.1_Silent_p.P163P	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	694	Ligand-binding.|Interaction with MYST2.				cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	ACAACCAGCCCGACTCCTTTG	0.522000									Androgen_Insensitivity_Syndrome				6	27					0	0	0	0
TSIX	9383	broad.mit.edu	37	X	73041968	73041968	+	RNA	SNP	C	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:73041968C>A	uc004ebn.2	+	1		c.29929C>A			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						AGGCTGGTACCAATGAGACTG	0.438000													17	10					1.15919e-05	1.25086e-05	1	0
KLHL4	56062	broad.mit.edu	37	X	86869564	86869564	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:86869564G>A	uc004efb.2	+	3	900	c.718G>A	c.(718-720)GCT>ACT	p.A240T	KLHL4_uc004efa.2_Missense_Mutation_p.A240T	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	240	BTB.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GGTGCAGTATGCTTACACAGG	0.348000													18	20					0	0	0	0
PLP1	5354	broad.mit.edu	37	X	103041641	103041641	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:103041641G>A	uc010nov.2	+	4	719	c.439G>A	c.(439-441)GGA>AGA	p.G147R	RAB9B_uc004eli.1_Intron|PLP1_uc004elk.2_Missense_Mutation_p.G147R|PLP1_uc004elj.2_Intron|PLP1_uc011msf.1_Missense_Mutation_p.G92R|PLP1_uc010now.1_Missense_Mutation_p.G151R|PLP1_uc010nox.2_Missense_Mutation_p.G101R	NM_001128834	NP_001122306	P60201	MYPR_HUMAN	proteolipid protein 1 isoform 1	147	Cytoplasmic (Probable).		Missing (in HLD1).		cell death|synaptic transmission	integral to membrane				ovary(1)	1						AAAATGGCTAGGACATCCCGA	0.562000													74	74					0	0	0	0
SAGE1	55511	broad.mit.edu	37	X	134988621	134988621	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:134988621C>T	uc004ezh.2	+	7	814	c.647C>T	c.(646-648)CCA>CTA	p.P216L	SAGE1_uc010nry.1_Missense_Mutation_p.P185L|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	216										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AATGTCCAACCAGCACCTGAT	0.443000													45	158					0	0	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795403	142795403	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:142795403G>A	uc004fbz.2	-	2	1029	c.275C>T	c.(274-276)GCT>GTT	p.A92V		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	92										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGATCCTTCAGCTGAGTCTAG	0.498000													150	156					0	0	0	0
SLITRK2	84631	broad.mit.edu	37	X	144904886	144904886	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:144904886G>T	uc004fcd.2	+	5	1933	c.943G>T	c.(943-945)GTG>TTG	p.V315L	SLITRK2_uc010nsp.2_Missense_Mutation_p.V315L|SLITRK2_uc010nso.2_Missense_Mutation_p.V315L|SLITRK2_uc011mwq.1_Missense_Mutation_p.V315L|SLITRK2_uc011mwr.1_Missense_Mutation_p.V315L|SLITRK2_uc011mws.1_Missense_Mutation_p.V315L|SLITRK2_uc004fcg.2_Missense_Mutation_p.V315L|SLITRK2_uc011mwt.1_Missense_Mutation_p.V315L	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	315	Extracellular (Potential).					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					AACTCCTCGAGTGACTGTGTC	0.552000													22	23					7.07758e-08	8.02632e-08	1	0
OPN1MW	2652	broad.mit.edu	37	X	153496125	153496125	+	Missense_Mutation	SNP	G	A	A	rs1065438	byFrequency	TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:153496125G>A	uc004fkd.2	+	5	935	c.853G>A	c.(853-855)GCC>ACC	p.A285T		NM_000513	NP_000504	P04001	OPSG_HUMAN	opsin 1 (cone pigments), medium-wave-sensitive	285	Helical; Name=6; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0	all_cancers(53;1.83e-16)|all_epithelial(53;2.73e-10)|all_lung(58;6.39e-07)|Lung NSC(58;8.37e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GGGACCCTACGCCTTCTTCGC	0.567000													20	0					0	0	0	0
PLXNA3	55558	broad.mit.edu	37	X	153688695	153688695	+	Missense_Mutation	SNP	C	T	T	rs147019078	byFrequency	TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:153688695C>T	uc004flm.2	+	2	345	c.172C>T	c.(172-174)CCC>TCC	p.P58S		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	58	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TAAGCTGGCCCCCAACCTGAC	0.672000													7	34					0	0	0	0
GPR161	23432	broad.mit.edu	37	1	168073877	168073878	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:168073877_168073878delAG	uc001gfc.2	-	4	525_526	c.211_212delCT	c.(211-213)CTGfs	p.L71fs	GPR161_uc001gfb.2_Intron|GPR161_uc010pll.1_Intron|GPR161_uc010plm.1_Intron|GPR161_uc009wvo.2_Frame_Shift_Del_p.L88fs|GPR161_uc001gfd.2_Frame_Shift_Del_p.L71fs|GPR161_uc010pln.1_Frame_Shift_Del_p.L91fs|GPR161_uc001gfe.1_Frame_Shift_Del_p.L71fs	NM_153832	NP_722561	Q8N6U8	GP161_HUMAN	G protein-coupled receptor 161 isoform 2	71	Helical; Name=2; (Potential).				multicellular organismal development	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_hematologic(923;0.215)					GAAGTTGGACAGAGTCAGGCTG	0.530													---	---	---							
OR2L3	391192	broad.mit.edu	37	1	248224614	248224615	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:248224614_248224615insT	uc001idx.1	+	1	631_632	c.631_632insT	c.(631-633)ATTfs	p.I211fs	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			GTTTCCCTTCATTGCTATTTCA	0.520													---	---	---							
OR2T1	26696	broad.mit.edu	37	1	248569335	248569335	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr1:248569335delC	uc010pzm.1	+	1	40	c.40delC	c.(40-42)CTTfs	p.L14fs		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTTCTTCCCACTTTTAAAAGT	0.308													---	---	---							
PRKCQ	5588	broad.mit.edu	37	10	6540446	6540446	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:6540446delC	uc001ijj.1	-	5	529	c.454delG	c.(454-456)GCAfs	p.A152fs	PRKCQ_uc009xim.1_Frame_Shift_Del_p.A152fs|PRKCQ_uc001iji.1_Frame_Shift_Del_p.A185fs|PRKCQ_uc009xin.1_Frame_Shift_Del_p.A116fs|PRKCQ_uc010qax.1_Frame_Shift_Del_p.A27fs	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	152					axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						TGGACCTTTGCCTGCTTGATG	0.512													---	---	---							
Unknown	0	broad.mit.edu	37	10	38978176	38978177	+	IGR	INS	-	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr10:38978176_38978177insC								LOC399744 (237096 upstream) : None (None downstream)																							TTCATAAGAAGTTTCACTAAAC	0.277													---	---	---							
OR10AG1	282770	broad.mit.edu	37	11	55735761	55735761	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr11:55735761delA	uc010rit.1	-	1	179	c.179delT	c.(178-180)TTGfs	p.L60fs		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					ACAGATTTCCAAAAGGGAAAA	0.353													---	---	---							
ATN1	1822	broad.mit.edu	37	12	7045880	7045885	+	In_Frame_Del	DEL	CAGCAA	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr12:7045880_7045885delCAGCAA	uc001qrw.1	+	5	1687_1692	c.1450_1455delCAGCAA	c.(1450-1455)CAGCAAdel	p.QQ500del	ATN1_uc001qrx.1_In_Frame_Del_p.QQ500del|ATN1_uc001qry.1_In_Frame_Del_p.QQ485del	NM_001007026	NP_001007027	P54259	ATN1_HUMAN	atrophin-1	500_501	Poly-Gln.				cell death|central nervous system development	cytoplasm|nucleus	protein domain specific binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						CCATCACCACcagcaacagcaacagc	0.447													---	---	---							
MYH6	4624	broad.mit.edu	37	14	23871681	23871681	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr14:23871681delC	uc001wjv.2	-	12	1200	c.1133delG	c.(1132-1134)GGCfs	p.G378fs	MYH6_uc010akp.1_Frame_Shift_Del_p.G378fs	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	378	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		ACCTTCGGTGCCGTCTGGCTC	0.627													---	---	---							
Unknown	0	broad.mit.edu	37	15	30783557	30783557	+	IGR	DEL	T	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr15:30783557delT								CHRFAM7A (97693 upstream) : FAM7A2 (81201 downstream)																							GAGCCAGTCATTTTTACTCCC	0.418													---	---	---							
PKD1	5310	broad.mit.edu	37	16	2158631	2158631	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr16:2158631delG	uc002cos.1	-	15	6746	c.6537delC	c.(6535-6537)GTCfs	p.V2179fs	PKD1_uc002cot.1_Frame_Shift_Del_p.V2179fs	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	2179	Extracellular (Potential).|REJ.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						TCTGGTAGGTGACGCAGTCGC	0.706													---	---	---							
CASKIN1	57524	broad.mit.edu	37	16	2234977	2234977	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr16:2234977delG	uc010bsg.1	-	13	1331	c.1299delC	c.(1297-1299)CCCfs	p.P433fs		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	433	CASK-binding (By similarity).				signal transduction	cytoplasm				skin(2)	2						GAGGCTTGGCGGGGCTGTCCC	0.667													---	---	---							
Unknown	0	broad.mit.edu	37	17	18965323	18965324	+	IGR	INS	-	A	A			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr17:18965323_18965324insA								GRAP (14987 upstream) : GRAPL (65458 downstream)																							aggtagcgttttctcctgagcg	0.000													---	---	---							
C17orf77	146723	broad.mit.edu	37	17	72588882	72588882	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr17:72588882delC	uc002jla.1	+	3	1059	c.697delC	c.(697-699)CCCfs	p.P233fs	CD300LD_uc002jkz.2_5'Flank	NM_152460	NP_689673	Q96MU5	CQ077_HUMAN	hypothetical protein LOC146723	233						extracellular region					0						TGACCCACTGCCCCTTCCCCC	0.493													---	---	---							
AFMID	125061	broad.mit.edu	37	17	76201735	76201735	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr17:76201735delG	uc002jva.3	+	9	711	c.696delG	c.(694-696)CCGfs	p.P232fs	AFMID_uc002jvb.3_Intron|AFMID_uc002juz.3_Frame_Shift_Del_p.P232fs	NM_001010982	NP_001010982	Q63HM1	AFMID_HUMAN	arylformamidase isoform 1	232						cytosol|nucleus	arylformamidase activity			large_intestine(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|OV - Ovarian serous cystadenocarcinoma(97;0.134)			AGGCACAGCCGGTGGACCCCA	0.652													---	---	---							
Unknown	0	broad.mit.edu	37	18	214519	214520	+	IGR	INS	-	TTG	TTG	rs142588910		TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr18:214519_214520insTTG								USP14 (780 upstream) : THOC1 (2 downstream)																							CTGTACAACAATTGTTATAAAA	0.351													---	---	---							
PLIN5	440503	broad.mit.edu	37	19	4523641	4523642	+	In_Frame_Ins	INS	-	CCCATT	CCCATT			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:4523641_4523642insCCCATT	uc002mas.2	-	8	1343_1344	c.1290_1291insAATGGG	c.(1288-1293)insAATGGG	p.430_431insNG		NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	430_431						lipid particle					0						CTGTCCCCATCCCCATTCCCAC	0.688											OREG0025168	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	---	---	---							
Unknown	0	broad.mit.edu	37	19	22496490	22496491	+	IGR	DEL	AC	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:22496490_22496491delAC								ZNF676 (116737 upstream) : ZNF98 (77408 downstream)																							TTCTCATTTTACACAAGACCTT	0.307													---	---	---							
ZNF585B	92285	broad.mit.edu	37	19	37676952	37676953	+	Frame_Shift_Ins	INS	-	AT	AT			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:37676952_37676953insAT	uc002ofq.2	-	5	1740_1741	c.1486_1487insAT	c.(1486-1488)TGTfs	p.C496fs	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Frame_Shift_Ins_p.C310fs	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	496	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ACATTTGGAACATATATAAGAT	0.401													---	---	---							
IRF3	3661	broad.mit.edu	37	19	50166762	50166765	+	Frame_Shift_Del	DEL	CGGC	-	-	rs112234580		TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr19:50166762_50166765delCGGC	uc010end.1	-	3	554_557	c.172_175delGCCG	c.(172-177)GCCGAGfs	p.A58fs	IRF3_uc002pos.1_5'Flank|IRF3_uc002pot.1_Frame_Shift_Del_p.A58fs|IRF3_uc002pox.1_Frame_Shift_Del_p.A58fs|IRF3_uc002poy.1_Frame_Shift_Del_p.A58fs|IRF3_uc002pou.2_Frame_Shift_Del_p.A58fs|IRF3_uc002pov.2_5'UTR|IRF3_uc002pow.2_Frame_Shift_Del_p.A58fs|IRF3_uc002poz.1_Frame_Shift_Del_p.A58fs|IRF3_uc010ene.1_Intron|BCL2L12_uc002ppa.2_5'Flank|BCL2L12_uc002ppb.2_5'Flank	NM_001571	NP_001562	Q14653	IRF3_HUMAN	interferon regulatory factor 3	58_59	IRF tryptophan pentad repeat.				interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytosol|endosome membrane|nucleoplasm|plasma membrane	DNA binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(2)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.02)		CCAGTGGCCTCGGCCCAGGCCTGG	0.603													---	---	---							
Unknown	0	broad.mit.edu	37	2	113103992	113103992	+	IGR	DEL	C	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:113103992delC								ZC3H6 (6352 upstream) : RGPD8 (21974 downstream)																							tcaccaccatcaccactgcca	0.000													---	---	---							
C2orf57	165100	broad.mit.edu	37	2	232458813	232458813	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr2:232458813delC	uc002vrz.2	+	1	1202	c.1151delC	c.(1150-1152)ACCfs	p.T384fs		NM_152614	NP_689827	Q53QW1	CB057_HUMAN	hypothetical protein LOC165100	384										ovary(1)	1		Renal(207;0.025)|all_hematologic(139;0.0735)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;1.33e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)		AGCCACCTCACCCCACGCCAG	0.652													---	---	---							
TCF15	6939	broad.mit.edu	37	20	590641	590642	+	Frame_Shift_Del	DEL	CC	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr20:590641_590642delCC	uc002wdz.2	-	1	269_270	c.240_241delGG	c.(238-243)CGGGAGfs	p.R80fs		NM_004609	NP_004600	Q12870	TCF15_HUMAN	basic helix-loop-helix transcription factor 15	80_81	Basic motif.				regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Breast(17;0.231)				CGGTCCCGCTCCCGCGCGTTGg	0.376													---	---	---							
Unknown	0	broad.mit.edu	37	22	16914284	16914284	+	IGR	DEL	C	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr22:16914284delC								OR11H1 (464480 upstream) : CCT8L2 (157364 downstream)																							TTTTCTAAAACTTTTGAAAGC	0.279													---	---	---							
MAGI1	9223	broad.mit.edu	37	3	65361520	65361520	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr3:65361520delT	uc003dmn.2	-	18	3622	c.3096delA	c.(3094-3096)GCAfs	p.A1032fs	MAGI1_uc003dmm.2_Frame_Shift_Del_p.A1060fs|MAGI1_uc003dmo.2_Frame_Shift_Del_p.A1061fs|MAGI1_uc003dmp.2_Intron	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	1061	PDZ 5.|Interaction with FCHSD2.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		ATCCATTTACTGCCAAGATCC	0.498													---	---	---							
DCHS2	54798	broad.mit.edu	37	4	155156292	155156293	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:155156292_155156293insC	uc003inw.2	-	25	8146_8147	c.8146_8147insG	c.(8146-8148)GAAfs	p.E2716fs		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2716					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GCTGCAGCCTTCCCCTTGATCT	0.510													---	---	---							
ODZ3	55714	broad.mit.edu	37	4	183652084	183652084	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr4:183652084delC	uc003ivd.1	+	15	2796	c.2759delC	c.(2758-2760)TCCfs	p.S920fs	ODZ3_uc003ive.1_Frame_Shift_Del_p.S326fs	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	920	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TTTGAACGATCCCCATTCCTC	0.418													---	---	---							
LPCAT1	79888	broad.mit.edu	37	5	1489905	1489907	+	In_Frame_Del	DEL	CTA	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:1489905_1489907delCTA	uc003jcm.2	-	4	677_679	c.560_562delTAG	c.(559-564)GTAGAA>GAA	p.V187del		NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	187	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		TTGATTTCTTCTACTGTTTTCCT	0.512													---	---	---							
Unknown	0	broad.mit.edu	37	5	25910270	25910270	+	IGR	DEL	G	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:25910270delG								None (None upstream) : CDH9 (970439 downstream)																							AGCTGTGGCTGGGGGTGGATG	0.458													---	---	---							
PCDHAC1	56135	broad.mit.edu	37	5	140308211	140308212	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:140308211_140308212insT	uc003lih.2	+	1	1910_1911	c.1734_1735insT	c.(1732-1737)CACTTGfs	p.H578fs	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Frame_Shift_Ins_p.H578fs	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	578_579	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACTGGACACTTGGTCACAAA	0.490													---	---	---							
PCDHGA6	56109	broad.mit.edu	37	5	140755535	140755536	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:140755535_140755536delGC	uc003ljy.1	+	1	1885_1886	c.1885_1886delGC	c.(1885-1887)GCGfs	p.A629fs	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Frame_Shift_Del_p.A629fs	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	629	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTGCGCACGGCGCGCGCCCTG	0.688													---	---	---							
NSD1	64324	broad.mit.edu	37	5	176637807	176637807	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr5:176637807delC	uc003mfr.3	+	5	2545	c.2407delC	c.(2407-2409)CCCfs	p.P803fs	NSD1_uc003mft.3_Frame_Shift_Del_p.P534fs|NSD1_uc003mfs.1_Frame_Shift_Del_p.P700fs|NSD1_uc011dfx.1_Frame_Shift_Del_p.P451fs	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	803					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		TATGGCAGAACCCCCAGTTAT	0.438			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			---	---	---							
SYNGAP1	8831	broad.mit.edu	37	6	33411201	33411203	+	In_Frame_Del	DEL	CAC	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:33411201_33411203delCAC	uc011dri.1	+	15	3067_3069	c.2872_2874delCAC	c.(2872-2874)CACdel	p.H966del	SYNGAP1_uc010juy.2_In_Frame_Del_p.H937del|SYNGAP1_uc010juz.2_In_Frame_Del_p.H678del	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	966					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						TTCCTCccatcaccaccaccacc	0.547													---	---	---							
Unknown	0	broad.mit.edu	37	6	78206041	78206042	+	IGR	DEL	AG	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr6:78206041_78206042delAG								HTR1B (32921 upstream) : None (None downstream)																							TTTTTGTAAAAGAGAGAGAGAG	0.411													---	---	---							
Unknown	0	broad.mit.edu	37	7	61968770	61968770	+	IGR	DEL	G	-	-	rs61713499		TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr7:61968770delG								None (None upstream) : LOC643955 (782902 downstream)																							ttgaaacactgtttttgcgga	0.000													---	---	---							
DLC1	10395	broad.mit.edu	37	8	12957611	12957613	+	In_Frame_Del	DEL	GCT	-	-	rs137989738		TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:12957611_12957613delGCT	uc003wwm.2	-	9	2677_2679	c.2233_2235delAGC	c.(2233-2235)AGCdel	p.S745del	DLC1_uc003wwk.1_In_Frame_Del_p.S308del|DLC1_uc003wwl.1_In_Frame_Del_p.S342del|DLC1_uc011kxx.1_In_Frame_Del_p.S234del	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	745	Poly-Ser.				actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						TCTCCGACTGGCTGCTGCTGCTG	0.621													---	---	---							
SGCZ	137868	broad.mit.edu	37	8	13948076	13948077	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr8:13948076_13948077insT	uc003wwq.2	-	8	1474_1475	c.814_815insA	c.(814-816)AGCfs	p.S272fs	SGCZ_uc010lss.2_Frame_Shift_Ins_p.S225fs	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	259	Poly-Ser.|Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		ACTTGAGGAGCTGGGTGAAGAA	0.431													---	---	---							
Unknown	0	broad.mit.edu	37	9	32946399	32946400	+	IGR	INS	-	C	C			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr9:32946399_32946400insC								TMEM215 (157202 upstream) : APTX (26209 downstream)																							CTATTTGCTGGCCCCCCAGATA	0.540													---	---	---							
EHMT1	79813	broad.mit.edu	37	9	140611227	140611228	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chr9:140611227_140611228insT	uc011mfc.1	+	3	272_273	c.235_236insT	c.(235-237)GTCfs	p.V79fs	EHMT1_uc004coa.2_Frame_Shift_Ins_p.V79fs|EHMT1_uc004cob.1_Frame_Shift_Ins_p.V48fs	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	79					DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		CAGCGCAAGGGTCAACCCCCAG	0.554													---	---	---							
Unknown	0	broad.mit.edu	37	X	15301495	15301495	+	IGR	DEL	G	-	-			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:15301495delG								ASB9 (12906 upstream) : ASB11 (132 downstream)																							TCTAGCTCATGGGGGATTTAC	0.408													---	---	---							
GLA	2717	broad.mit.edu	37	X	100652942	100652943	+	In_Frame_Ins	INS	-	AGG	AGG	rs113993943		TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:100652942_100652943insAGG	uc004ehl.1	-	7	1254_1255	c.1144_1145insCCT	c.(1144-1146)TGC>TCCTGC	p.381_382insS		NM_000169	NP_000160	P06280	AGAL_HUMAN	alpha-galactosidase A precursor	381_382					glycoside catabolic process|glycosphingolipid catabolic process|glycosylceramide catabolic process|negative regulation of nitric oxide biosynthetic process|negative regulation of nitric-oxide synthase activity|oligosaccharide metabolic process	extracellular region|Golgi apparatus|lysosome	cation binding|protein homodimerization activity|raffinose alpha-galactosidase activity|receptor binding				0					Agalsidase beta(DB00103)	TGTGATGAAGCAGGCAGGATTA	0.490													---	---	---							
Unknown	0	broad.mit.edu	37	X	133407432	133407433	+	IGR	INS	-	T	T			TCGA-DQ-7595-01A-11D-2229-08	TCGA-DQ-7595-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d504cd7-09f0-4691-a1b2-55fc7d206439	b22ca993-a7fe-4ef4-97b2-92319beec503	g.chrX:133407432_133407433insT								CCDC160 (27626 upstream) : PHF6 (99909 downstream)																							AATGAGGCTCCTTTTTTTTTTA	0.381													---	---	---							
