Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACLY	47	genome.wustl.edu	37	17	40065254	40065254	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	17	40065254	40065254	T	A	SNP	ACLY	NM_001096.2	human	genbank	58_37c	-1	reviewed	missense	c.604	p.I202F	1.000	superfamily_SSF56059	HMMPfam_CoA_binding,PatternScan_SUCCINYL_COA_LIG_1,HMMPfam_Ligase_CoA,superfamily_NAD(P)-bd,superfamily_CoA_ligase,superfamily_Citrate_synthase_core,PatternScan_SUCCINYL_COA_LIG_2,PatternScan_SUCCINYL_COA_LIG_3,superfamily_SSF56059	-	no_errors
AK7	122481	genome.wustl.edu	37	14	96871122	96871122	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	14	96871122	96871122	G	A	SNP	AK7	NM_152327.2	human	genbank	58_37c	+1	validated	missense	c.323	p.R108H	0.007	superfamily_NAD(P)-binding Rossmann-fold domains	HMMPfam_Dpy-30,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ANXA13	312	genome.wustl.edu	37	8	124710745	124710745	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	8	124710745	124710745	A	C	SNP	ANXA13	NM_001003954.1	human	genbank	58_37c	-1	reviewed	missense	c.364	p.L122V	0.101	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335	-	no_errors
CBS	875	genome.wustl.edu	37	21	44483098	44483098	+	Missense_Mutation	SNP	C	C	T	rs121964962	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	21	44483098	44483098	C	T	SNP	CBS	NM_000071.2	human	genbank	58_37c	-1	reviewed	missense	c.919	p.G307S	1.000	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes	HMMPfam_CBS,HMMSmart_SM00116,PatternScan_CYS_SYNTHASE,HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes,superfamily_CBS-domain	-	no_errors
CCDC37	348807	genome.wustl.edu	37	3	126153123	126153123	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	3	126153123	126153123	C	T	SNP	CCDC37	NM_182628.2	human	genbank	58_37c	+1	validated	silent	c.1527	p.I509	0.076	NULL	NULL	-	no_errors
CDH6	1004	genome.wustl.edu	37	5	31294332	31294332	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	5	31294332	31294332	C	A	SNP	CDH6	NM_004932.2	human	genbank	58_37c	+1	reviewed	nonsense	c.492	p.Y164*	1.000	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
DAAM2	23500	genome.wustl.edu	37	6	39847226	39847226	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	6	39847226	39847226	G	A	SNP	DAAM2	NM_015345.2	human	genbank	58_37c	+1	validated	silent	c.1818	p.K606	1.000	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	HMMSmart_SM00498,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	-	no_errors
DCLK1	9201	genome.wustl.edu	37	13	36700097	36700097	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	13	36700097	36700097	G	A	SNP	DCLK1	NM_004734.3	human	genbank	58_37c	-1	validated	missense	c.178	p.R60C	1.000	HMMSmart_DCX,superfamily_SSF89837	HMMSmart_S_TKc,HMMPfam_DCX,HMMSmart_DCX,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF89837	-	no_errors
DLC1	10395	genome.wustl.edu	37	8	13357027	13357027	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	8	13357027	13357027	T	C	SNP	DLC1	NM_182643.2	human	genbank	58_37c	-1	reviewed	missense	c.554	p.D185G	0.042	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_START,HMMSmart_SM00234,superfamily_GTPase activation domain GAP,HMMPfam_SAM_2,superfamily_Bet v1-like	-	no_errors
EMR1	2015	genome.wustl.edu	37	19	6919734	6919734	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	19	6919734	6919734	C	T	SNP	EMR1	NM_001974.3	human	genbank	58_37c	+1	reviewed	silent	c.1596	p.I532	0.001	superfamily_Family A G protein-coupled receptor-like	PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_G_PROTEIN_RECEP_F2_2,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Family A G protein-coupled receptor-like	-	no_errors
ENSG00000206750	0	genome.wustl.edu	37	GL000205.1	81486	81486	+	RNA	SNP	A	A	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	GL000205.1	81486	81486	A	C	SNP	ENSG00000206750	ENST00000384023	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000245029	0	genome.wustl.edu	37	1	16889044	16889044	+	RNA	SNP	T	T	A	rs75564386	byCluster	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	1	16889044	16889044	T	A	SNP	NBPF1	ENST00000392963	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-16889044	NULL	0.000	-	-	-	no_coding_region
IDH3A	3419	genome.wustl.edu	37	15	78453949	78453949	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	15	78453949	78453949	G	A	SNP	IDH3A	NM_005530.2	human	genbank	58_37c	+1	reviewed	missense	c.316	p.G106S	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
IGSF8	93185	genome.wustl.edu	37	1	160063723	160063723	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	1	160063723	160063723	G	C	SNP	IGSF8	NM_052868.2	human	genbank	58_37c	-1	provisional	silent	c.681	p.A227	0.021	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
ITPR3	3710	genome.wustl.edu	37	6	33653896	33653896	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	6	33653896	33653896	G	A	SNP	ITPR3	NM_002224.2	human	genbank	58_37c	+1	validated	missense	c.5734	p.D1912N	1.000	HMMPfam_RIH_assoc	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR,HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_MIR,superfamily_SSF100909	-	no_errors
KDM2A	22992	genome.wustl.edu	37	11	67020978	67020978	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	11	67020978	67020978	G	A	SNP	KDM2A	NM_012308.2	human	genbank	58_37c	+1	reviewed	missense	c.2987	p.S996N	1.000	superfamily_RNI-like	HMMPfam_F-box,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00558,PatternScan_2FE2S_FER_1,HMMSmart_SM00367,HMMPfam_JmjC,PatternScan_ZF_PHD_1,superfamily_Clavaminate synthase-like,superfamily_RNI-like	-	no_errors
KIAA1199	57214	genome.wustl.edu	37	15	81221455	81221455	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	15	81221455	81221455	A	G	SNP	KIAA1199	NM_018689.1	human	genbank	58_37c	+1	validated	missense	c.2552	p.D851G	1.000	NULL	HMMPfam_G8	-	no_errors
LOC100288765	0	genome.wustl.edu	37	9	69845843	69845843	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	9	69845843	69845843	A	C	SNP	LOC100288765	XM_002342925.1	human	genbank	58_37c	+1	model	missense	c.172	p.N58H	0.143	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC100289496	0	genome.wustl.edu	37	16	73164976	73164976	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	16	73164976	73164976	G	T	SNP	LOC100289496	XM_002344114.1	human	genbank	58_37c	-1	model	missense	c.153	p.H51Q	0.000	NULL	NULL	-	no_errors
LRP1	4035	genome.wustl.edu	37	12	57602874	57602874	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	12	57602874	57602874	G	A	SNP	LRP1	NM_002332.2	human	genbank	58_37c	+1	reviewed	missense	c.12154	p.V4052M	1.000	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
MAP1A	4130	genome.wustl.edu	37	15	43817021	43817021	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	15	43817021	43817021	C	T	SNP	MAP1A	NM_002373.5	human	genbank	58_37c	+1	reviewed	missense	c.3350	p.A1117V	0.000	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
MIR1182	0	genome.wustl.edu	37	1	231155551	231155551	+	RNA	SNP	G	G	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	1	231155551	231155551	G	T	SNP	FAM89A	ENST00000466258	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-231155551	NULL	0.086	-	-	-	no_coding_region
MMP15	4324	genome.wustl.edu	37	16	58073925	58073925	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	16	58073925	58073925	A	T	SNP	MMP15	NM_002428.2	human	genbank	58_37c	+1	reviewed	missense	c.587	p.D196V	1.000	HMMPfam_Peptidase_M10,HMMSmart_ZnMc,superfamily_SSF55486	superfamily_Hemopexin,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_ZINC_PROTEASE,HMMSmart_ZnMc,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_HX,superfamily_SSF55486	-	no_errors
MYO15A	51168	genome.wustl.edu	37	17	18022852	18022852	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	17	18022852	18022852	C	T	SNP	MYO15A	NM_016239.3	human	genbank	58_37c	+1	reviewed	silent	c.738	p.Y246	0.983	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_MyTH4,HMMSmart_SM00139,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_SH3_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYO3A	53904	genome.wustl.edu	37	10	26463156	26463156	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	10	26463156	26463156	A	G	SNP	MYO3A	NM_017433.4	human	genbank	58_37c	+1	reviewed	silent	c.3963	p.E1321	0.003	superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52540	-	no_errors
MYST4	23522	genome.wustl.edu	37	10	76788710	76788710	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	10	76788710	76788710	A	G	SNP	MYST4	NM_012330.2	human	genbank	58_37c	+1	validated	silent	c.4128	p.G1376	0.002	NULL	"HMMSmart_SM00249,HMMPfam_MOZ_SAS,HMMSmart_SM00526,superfamily_FYVE/PHD zinc finger,superfamily_Acyl-CoA N-acyltransferases (Nat),PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
OR2G3	81469	genome.wustl.edu	37	1	247769043	247769043	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	1	247769043	247769043	T	G	SNP	OR2G3	NM_001001914.1	human	genbank	58_37c	+1	provisional	missense	c.156	p.D52E	0.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PAK3	5063	genome.wustl.edu	37	X	110366476	110366476	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	X	110366476	110366476	C	T	SNP	PAK3	NM_001128168.1	human	genbank	58_37c	+1	reviewed	missense	c.145	p.R49C	1.000	NULL	HMMPfam_PBD,HMMSmart_PBD,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PANX1	24145	genome.wustl.edu	37	11	93913090	93913090	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	11	93913090	93913090	G	T	SNP	PANX1	NM_015368.3	human	genbank	58_37c	+1	reviewed	missense	c.868	p.V290L	0.001	NULL	NULL	-	no_errors
PCDHB4	56131	genome.wustl.edu	37	5	140503531	140503531	+	Missense_Mutation	SNP	C	C	T	rs17844417	byCluster;byFrequency;by1000genomes	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	5	140503531	140503531	C	T	SNP	PCDHB4	NM_018938.2	human	genbank	58_37c	+1	reviewed	missense	c.1951	p.R651C	0.488	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PFKL	5211	genome.wustl.edu	37	21	45742920	45742920	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	21	45742920	45742920	C	T	SNP	PFKL	NM_002626.4	human	genbank	58_37c	+1	reviewed	silent	c.1485	p.V495	0.985	HMMPfam_PFK,superfamily_Phosphofructokinase	HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE	-	no_errors
PITPNB	23760	genome.wustl.edu	37	22	28293118	28293118	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	22	28293118	28293118	C	T	SNP	PITPNB	NM_012399.3	human	genbank	58_37c	-1	reviewed	silent	c.297	p.T99	1.000	HMMPfam_IP_trans,superfamily_Bet v1-like	HMMPfam_IP_trans,superfamily_Bet v1-like	-	no_errors
PIWIL3	440822	genome.wustl.edu	37	22	25115535	25115535	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	22	25115535	25115535	C	T	SNP	PIWIL3	NM_001008496.2	human	genbank	58_37c	-1	validated	silent	c.2553	p.A851	0.991	HMMPfam_Piwi,superfamily_RNaseH_fold	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_RNaseH_fold,superfamily_SSF101690	-	no_errors
PRAMEF11	440560	genome.wustl.edu	37	1	12887489	12887489	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	1	12887489	12887489	T	C	SNP	PRAMEF11	ENST00000331684	human	ensembl	58_37c	-1	known	missense	c.368	p.Y123C	0.000	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
RAB43	339122	genome.wustl.edu	37	3	128810076	128810076	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	3	128810076	128810076	T	C	SNP	RAB43	NM_198490.1	human	genbank	58_37c	-1	validated	missense	c.502	p.N168D	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RAP1GAP	5909	genome.wustl.edu	37	1	21924472	21924472	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	1	21924472	21924472	C	T	SNP	RAP1GAP	NM_001145658.1	human	genbank	58_37c	-1	validated	silent	c.2157	p.E719	0.995	NULL	HMMPfam_Rap_GAP,HMMPfam_GoLoco,HMMSmart_SM00390,superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
REV3L	5980	genome.wustl.edu	37	6	111688818	111688818	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	6	111688818	111688818	C	A	SNP	REV3L	NM_002912.3	human	genbank	58_37c	-1	validated	missense	c.6173	p.C2058F	0.118	superfamily_Ribonuclease H-like	HMMPfam_DNA_pol_B_exo,HMMPfam_DNA_pol_B,HMMSmart_SM00486,superfamily_Ribonuclease H-like,PatternScan_DNA_POLYMERASE_B,superfamily_DNA/RNA polymerases	-	no_errors
SASH1	23328	genome.wustl.edu	37	6	148852768	148852768	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	6	148852768	148852768	G	A	SNP	SASH1	NM_015278.3	human	genbank	58_37c	+1	validated	missense	c.1535	p.R512H	1.000	NULL	HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,HMMPfam_SH3_2	-	no_errors
SLC7A7	9056	genome.wustl.edu	37	14	23245482	23245482	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	14	23245482	23245482	G	A	SNP	SLC7A7	NM_001126105.1	human	genbank	58_37c	-1	reviewed	silent	c.816	p.I272	1.000	HMMPfam_AA_permease	PatternScan_AMINO_ACID_PERMEASE_1,HMMPfam_AA_permease	-	no_errors
SMARCD3	6604	genome.wustl.edu	37	7	150937202	150937202	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	7	150937202	150937202	C	T	SNP	SMARCD3	NM_001003801.1	human	genbank	58_37c	-1	reviewed	missense	c.1169	p.S390N	1.000	NULL	HMMPfam_SWIB,superfamily_SWIB/MDM2 domain,HMMSmart_SM00151	-	no_errors
SRGAP2P2	0	genome.wustl.edu	37	1	144014068	144014068	+	Missense_Mutation	SNP	T	C	C	rs1884146	byCluster;byFrequency;by2Hit2Allele;byHapmap	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	1	144014068	144014068	T	C	SNP	SRGAP2P2	ENST00000467933	human	ensembl	58_37c	+1	known	3_prime_untranslated_region	c.*144014068	NULL	0.998	-	-	-	no_coding_region
TLE6	79816	genome.wustl.edu	37	19	2987728	2987728	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	19	2987728	2987728	G	T	SNP	TLE6	NM_001143986.1	human	genbank	58_37c	+1	validated	nonsense	c.565	p.E189*	0.234	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578534	7578534	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	17	7578534	7578534	C	G	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.396	p.K132N	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRAPPC2	6399	genome.wustl.edu	37	X	13734634	13734634	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	X	13734634	13734634	A	G	SNP	TRAPPC2	NM_001128835.2	human	genbank	58_37c	-1	reviewed	missense	c.257	p.V86A	0.001	HMMPfam_Sedlin_N	HMMPfam_Sedlin_N,superfamily_SNARE-like	-	no_errors
TRPV2	51393	genome.wustl.edu	37	17	16330833	16330833	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	17	16330833	16330833	T	G	SNP	TRPV2	NM_016113.3	human	genbank	58_37c	+1	reviewed	missense	c.1322	p.L441R	0.990	NULL	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_Ion_trans	-	no_errors
TUBAL3	79861	genome.wustl.edu	37	10	5435789	5435789	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	10	5435789	5435789	C	T	SNP	TUBAL3	NM_024803.2	human	genbank	58_37c	-1	validated	silent	c.1032	p.S344	0.660	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like	-	no_errors
ZNF577	84765	genome.wustl.edu	37	19	52376691	52376691	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A1B0-01A-11D-A12Q-09	TCGA-E2-A1B0-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14e3b00c-cbec-4733-8fa4-829b8e7d9808	ce4b0897-884b-4483-b105-7677ddcb341d	19	52376691	52376691	T	C	SNP	ZNF577	NM_032679.2	human	genbank	58_37c	-1	validated	silent	c.552	p.K184	0.519	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
