Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AADACL4	0	genome.wustl.edu	37	1	12704575	12704575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	12704575	12704575	C	T	SNP	AADACL4	NM_001013630.1	human	genbank	58_37c	+1	provisional	missense	c.10	p.P4S	0.001	NULL	PatternScan_LIPASE_GDXG_HIS,PatternScan_LIPASE_GDXG_SER,HMMPfam_Abhydrolase_3,superfamily_SSF53474	-	no_errors
ADAL	0	genome.wustl.edu	37	15	43644127	43644127	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	15	43644127	43644127	G	C	SNP	ADAL	ENST00000422466	human	ensembl	58_37c	+1	known	missense	c.1052	p.R351T	0.991	NULL	HMMPfam_A_deaminase,superfamily_Metallo-dependent hydrolases	-	no_errors
ADCY7	0	genome.wustl.edu	37	16	50328657	50328657	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	16	50328657	50328657	G	A	SNP	ADCY7	NM_001114.3	human	genbank	58_37c	+1	reviewed	missense	c.943	p.A315T	1.000	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
AGAP2	0	genome.wustl.edu	37	12	58128453	58128453	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	12	58128453	58128453	C	T	SNP	AGAP2	NM_001122772.1	human	genbank	58_37c	-1	validated	missense	c.1237	p.G413S	1.000	HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Miro,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Miro,superfamily_PH domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
AKT2	0	genome.wustl.edu	37	19	40741973	40741973	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	40741973	40741973	C	T	SNP	AKT2	NM_001626.3	human	genbank	58_37c	-1	reviewed	nonsense	c.999	p.W333*	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TK_X,HMMPfam_PH,HMMSmart_PH,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_SSF50729	-	no_errors
ASAP1	0	genome.wustl.edu	37	8	131226804	131226804	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	8	131226804	131226804	G	C	SNP	ASAP1	NM_018482.2	human	genbank	58_37c	-1	validated	missense	c.403	p.L135V	1.000	NULL	HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PH,HMMSmart_PH,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_SSF50729	-	no_errors
ASCL3	0	genome.wustl.edu	37	11	8959263	8959267	+	Frame_Shift_Del	DEL	AGAAG	AGAAG	-	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	AGAAG	AGAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	11	8959263	8959267	AGAAG	-	DEL	ASCL3	NM_020646.1	human	genbank	58_37c	-1	provisional	frame_shift_del	c.446_442	p.L148fs	0.991:0.965:0.858:0.997:0.994	HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors
C4orf47	0	genome.wustl.edu	37	4	186370764	186370764	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	4	186370764	186370764	A	G	SNP	C4orf47	NM_001114357.1	human	genbank	58_37c	+1	predicted	missense	c.896	p.K299R	0.999	NULL	NULL	-	no_errors
C8orf84	0	genome.wustl.edu	37	8	73982160	73982160	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	8	73982160	73982160	C	T	SNP	C8orf84	NM_153225.3	human	genbank	58_37c	-1	validated	nonsense	c.557	p.W186*	0.994	NULL	HMMSmart_TSP1,superfamily_TSP1,PatternScan_SMB_1	-	no_errors
ENSG00000152042	0	genome.wustl.edu	37	1	146055349	146055349	+	Missense_Mutation	SNP	G	G	A	rs71231122	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	146055349	146055349	G	A	SNP	ENSG00000152042	ENST00000479926	human	ensembl	58_37c	-1	known	missense	c.274	p.L92F	0.060	NULL	HMMPfam_DUF1220	-	no_errors
ENSG00000232657	0	genome.wustl.edu	37	4	49110433	49110433	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	4	49110433	49110433	C	A	SNP	ENSG00000232657	ENST00000417204	human	ensembl	58_37c	-1	known	missense	c.69	p.W23C	0.000	NULL	NULL	-	no_stop_codon
EPHA3	0	genome.wustl.edu	37	3	89521635	89521635	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	3	89521635	89521635	C	G	SNP	EPHA3	NM_005233.5	human	genbank	58_37c	+1	reviewed	missense	c.2712	p.D904E	1.000	NULL	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),HMMPfam_SAM_2,PatternScan_EGF_2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
EXOSC9	0	genome.wustl.edu	37	4	122737590	122737590	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	4	122737590	122737590	C	G	SNP	EXOSC9	NM_001034194.1	human	genbank	58_37c	+1	validated	missense	c.1274	p.P425R	0.043	NULL	HMMPfam_RNase_PH,HMMPfam_RNase_PH_C,superfamily_3_ExoRNase,superfamily_Ribosomal_S5_D2-typ_fold	-	no_errors
FAM47B	0	genome.wustl.edu	37	X	34961414	34961414	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	X	34961414	34961414	G	T	SNP	FAM47B	NM_152631.2	human	genbank	58_37c	+1	validated	nonsense	c.466	p.E156*	0.116	NULL	NULL	-	no_errors
FAM75A6	0	genome.wustl.edu	37	9	43625257	43625257	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	9	43625257	43625257	C	T	SNP	FAM75A6	NM_001145196.1	human	genbank	58_37c	-1	predicted	missense	c.3430	p.V1144I	0.000	NULL	NULL	-	no_errors
FBN1	0	genome.wustl.edu	37	15	48766788	48766788	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	15	48766788	48766788	T	C	SNP	FBN1	NM_000138.4	human	genbank	58_37c	-1	reviewed	missense	c.4024	p.T1342A	1.000	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FBXL17	0	genome.wustl.edu	37	5	107216824	107216824	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	5	107216824	107216824	A	G	SNP	FBXL17	ENST00000496714	human	ensembl	58_37c	-1	known	missense	c.685	p.C229R	1.000	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
FLJ44082	0	genome.wustl.edu	37	9	84562337	84562337	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	9	84562337	84562337	G	C	SNP	FLJ44082	NM_207416.2	human	genbank	58_37c	+1	validated	missense	c.2169	p.E723D	0.000	NULL	NULL	-	no_errors
FLYWCH1	0	genome.wustl.edu	37	16	2983148	2983148	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	16	2983148	2983148	G	A	SNP	FLYWCH1	NM_032296.2	human	genbank	58_37c	+1	validated	missense	c.811	p.E271K	0.956	NULL	HMMPfam_FLYWCH	-	no_errors
GFPT2	0	genome.wustl.edu	37	5	179745913	179745913	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	5	179745913	179745913	C	T	SNP	GFPT2	NM_005110.2	human	genbank	58_37c	-1	provisional	missense	c.838	p.D280N	1.000	superfamily_SSF56235	HMMPfam_GATase_2,HMMPfam_SIS,superfamily_SSF53697,superfamily_SSF56235	-	no_errors
GLDC	0	genome.wustl.edu	37	9	6605176	6605176	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	9	6605176	6605176	C	G	SNP	GLDC	NM_000170.2	human	genbank	58_37c	-1	reviewed	missense	c.816	p.K272N	1.000	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_GDC-P	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_GDC-P	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168377311	168377313	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	6	168377311	168377313	AGA	-	DEL	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	in_frame_del	c.22_20	p.F7in_frame_del	0.986:0.979:0.973	NULL	NULL	-	no_errors
HLA-J	0	genome.wustl.edu	37	6	29974791	29974791	+	RNA	SNP	G	G	C	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	6	29974791	29974791	G	C	SNP	HLA-J	NR_024240.1	human	genbank	58_37c	+1	reviewed	rna	NULL	NULL	0.020	-	-	-	pseudogene
INSRR	0	genome.wustl.edu	37	1	156812803	156812803	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	156812803	156812803	T	A	SNP	INSRR	NM_014215.1	human	genbank	58_37c	-1	validated	missense	c.3119	p.H1040L	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_Furin-like,HMMSmart_FU,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Grow_fac_recept,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52058	-	no_errors
ITGA1	0	genome.wustl.edu	37	5	52240786	52240786	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	5	52240786	52240786	G	C	SNP	ITGA1	NM_181501.1	human	genbank	58_37c	+1	reviewed	missense	c.3299	p.S1100T	1.000	superfamily_SSF69179	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF53300,superfamily_SSF69179,superfamily_SSF69318	-	no_errors
ITIH5	0	genome.wustl.edu	37	10	7605192	7605192	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	10	7605192	7605192	T	A	SNP	ITIH5	NM_030569.5	human	genbank	58_37c	-1	validated	missense	c.2683	p.I895F	1.000	HMMPfam_ITI_HC_C	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00609,HMMPfam_ITI_HC_C,HMMPfam_VIT,superfamily_vWA-like	-	no_errors
KCNA6	0	genome.wustl.edu	37	12	4920003	4920003	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	12	4920003	4920003	G	T	SNP	KCNA6	NM_002235.3	human	genbank	58_37c	+1	reviewed	missense	c.796	p.V266L	1.000	HMMPfam_Ion_trans,superfamily_SSF81324	HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324	-	no_errors
KIAA1107	0	genome.wustl.edu	37	1	92647600	92647600	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	92647600	92647600	G	C	SNP	KIAA1107	NM_015237.2	human	genbank	58_37c	+1	validated	missense	c.3046	p.E1016Q	0.998	NULL	NULL	-	no_errors
KIFAP3	0	genome.wustl.edu	37	1	170007569	170007569	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	170007569	170007569	C	T	SNP	KIFAP3	NM_014970.2	human	genbank	58_37c	-1	reviewed	missense	c.379	p.D127N	1.000	HMMPfam_KAP,superfamily_ARM repeat	HMMSmart_SM00185,HMMPfam_KAP,superfamily_ARM repeat	-	no_errors
LAMA1	0	genome.wustl.edu	37	18	7011427	7011427	+	Silent	SNP	A	A	G	rs141269552	byFrequency	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	18	7011427	7011427	A	G	SNP	LAMA1	NM_005559.2	human	genbank	58_37c	-1	validated	silent	c.3559	p.L1187	0.963	superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_Laminin_B,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,superfamily_EGF/Laminin	-	no_errors
LCN2	0	genome.wustl.edu	37	9	130913971	130913971	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	9	130913971	130913971	C	G	SNP	LCN2	NM_005564.3	human	genbank	58_37c	+1	validated	silent	c.330	p.G110	1.000	HMMPfam_Lipocalin,superfamily_Lipocalins	HMMPfam_Lipocalin,PatternScan_LIPOCALIN,superfamily_Lipocalins	-	no_errors
LOC440563	0	genome.wustl.edu	37	1	13183615	13183615	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	13183615	13183615	T	C	SNP	LOC440563	NM_001136561.2	human	genbank	58_37c	-1	validated	silent	c.258	p.A86	0.096	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
MED16	0	genome.wustl.edu	37	19	875294	875295	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	875294	875295	TT	-	DEL	MED16	NM_005481.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.1721_1720	p.K574fs	1.000:1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
MPND	0	genome.wustl.edu	37	19	4354359	4354359	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	4354359	4354359	C	A	SNP	MPND	NM_032868.4	human	genbank	58_37c	+1	validated	missense	c.788	p.A263D	1.000	NULL	HMMPfam_Mov34,superfamily_JAB1/MPN domain	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100637073	100637073	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	7	100637073	100637073	C	T	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.3658	p.R1220C	0.000	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MXRA5	0	genome.wustl.edu	37	X	3239601	3239601	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	X	3239601	3239601	T	C	SNP	MXRA5	NM_015419.3	human	genbank	58_37c	-1	reviewed	silent	c.4125	p.P1375	0.001	NULL	HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
NEB	0	genome.wustl.edu	37	2	152580858	152580858	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	2	152580858	152580858	C	T	SNP	NEB	NM_004543.4	human	genbank	58_37c	-1	reviewed	nonsense	c.528	p.W176*	1.000	HMMPfam_Nebulin,HMMSmart_SM00227	HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_errors
P2RY8	0	genome.wustl.edu	37	X	1584682	1584688	+	Frame_Shift_Del	DEL	AGCACGA	AGCACGA	-	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	AGCACGA	AGCACGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	X	1584682	1584688	AGCACGA	-	DEL	P2RY8	NM_178129.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.770_764	p.F255fs	1.000:1.000:0.998:1.000:1.000:1.000:1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCDHGA7	0	genome.wustl.edu	37	5	140764619	140764619	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	5	140764619	140764619	G	A	SNP	PCDHGA7	NM_018920.2	human	genbank	58_37c	+1	reviewed	missense	c.2153	p.R718H	0.979	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PRAMEF10	0	genome.wustl.edu	37	1	12954890	12954890	+	Silent	SNP	C	C	T	rs75339179	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	12954890	12954890	C	T	SNP	PRAMEF10	NM_001039361.3	human	genbank	58_37c	-1	validated	silent	c.393	p.K131	0.000	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRX	0	genome.wustl.edu	37	19	40902282	40902282	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	40902282	40902282	G	T	SNP	PRX	NM_181882.2	human	genbank	58_37c	-1	reviewed	silent	c.1977	p.L659	0.024	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
PSMD2	0	genome.wustl.edu	37	3	184018176	184018176	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	3	184018176	184018176	C	G	SNP	PSMD2	NM_002808.3	human	genbank	58_37c	+1	reviewed	missense	c.301	p.P101A	1.000	superfamily_ARM-type_fold	HMMPfam_PC_rep,superfamily_ARM-type_fold	-	no_errors
PTRF	0	genome.wustl.edu	37	17	40557214	40557214	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	17	40557214	40557214	T	A	SNP	PTRF	NM_012232.5	human	genbank	58_37c	-1	reviewed	nonsense	c.664	p.K222*	1.000	NULL	NULL	-	no_errors
RBM3	0	genome.wustl.edu	37	X	48434030	48434030	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	X	48434030	48434030	T	A	SNP	RBM3	NM_006743.3	human	genbank	58_37c	+1	reviewed	missense	c.185	p.V62D	1.000	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
RPTN	0	genome.wustl.edu	37	1	152128042	152128042	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	152128042	152128042	A	G	SNP	RPTN	NM_001122965.1	human	genbank	58_37c	-1	validated	silent	c.1533	p.Y511	0.023	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
SH3GLB2	0	genome.wustl.edu	37	9	131772130	131772130	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	9	131772130	131772130	G	T	SNP	SH3GLB2	NM_020145.2	human	genbank	58_37c	-1	provisional	silent	c.759	p.L253	0.982	HMMPfam_BAR,HMMSmart_SM00721	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_BAR,HMMSmart_SM00721	-	no_errors
SLC5A5	0	genome.wustl.edu	37	19	17988649	17988649	+	Silent	SNP	C	C	T	rs121909175	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	17988649	17988649	C	T	SNP	SLC5A5	NM_000453.2	human	genbank	58_37c	+1	reviewed	silent	c.816	p.C272	0.730	NULL	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2	-	no_errors
SLC5A6	0	genome.wustl.edu	37	2	27425725	27425725	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	2	27425725	27425725	G	C	SNP	SLC5A6	NM_021095.2	human	genbank	58_37c	-1	validated	missense	c.1231	p.L411V	1.000	HMMPfam_SSF	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2	-	no_errors
SPAST	0	genome.wustl.edu	37	2	32361954	32361954	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	2	32361954	32361954	G	T	SNP	SPAST	NM_014946.3	human	genbank	58_37c	+1	reviewed	missense	c.1330	p.D444Y	1.000	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_MIT,HMMSmart_SM00745,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SSTR4	0	genome.wustl.edu	37	20	23016840	23016840	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	20	23016840	23016840	C	T	SNP	SSTR4	NM_001052.2	human	genbank	58_37c	+1	validated	silent	c.720	p.A240	0.682	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
STAC2	0	genome.wustl.edu	37	17	37369367	37369373	+	Frame_Shift_Del	DEL	CCCGGTC	CCCGGTC	-	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	CCCGGTC	CCCGGTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	17	37369367	37369373	CCCGGTC	-	DEL	STAC2	NM_198993.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.1012_1006	p.D336fs	0.821:0.807:0.997:1.000:1.000:1.000:1.000	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_SH3_2,superfamily_Cysteine-rich domain	-	no_errors
STON2	0	genome.wustl.edu	37	14	81743745	81743747	+	In_Frame_Del	DEL	GTG	GTG	-	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	GTG	GTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	14	81743745	81743747	GTG	-	DEL	STON2	NM_033104.2	human	genbank	58_37c	-1	provisional	in_frame_del	c.1910_1908	p.T637in_frame_del	0.994:0.996:0.998	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	-	no_errors
TAF4	0	genome.wustl.edu	37	20	60578806	60578811	+	Splice_Site	DEL	CTGGAT	CTGGAT	-	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	CTGGAT	CTGGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	20	60578806	60578811	CTGGAT	-	DEL	TAF4	ENST00000479744	human	ensembl	58_37c	-1	known	splice_site_del	c.NULL	NULL	1.000:1.000:1.000:0.991:1.000:1.000	-	-	-	no_coding_region
TFG	0	genome.wustl.edu	37	3	100467337	100467337	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	3	100467337	100467337	G	T	SNP	TFG	NM_001007565.1	human	genbank	58_37c	+1	validated	missense	c.1165	p.G389C	1.000	NULL	HMMPfam_PB1,HMMSmart_PB1,superfamily_SSF54277	-	no_errors
TLR4	0	genome.wustl.edu	37	9	120475050	120475050	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	9	120475050	120475050	T	C	SNP	TLR4	NM_138554.3	human	genbank	58_37c	+1	reviewed	missense	c.644	p.M215T	0.345	HMMSmart_SM00369,superfamily_L domain-like	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
TLR4	0	genome.wustl.edu	37	9	120475844	120475844	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	9	120475844	120475844	G	T	SNP	TLR4	NM_138554.3	human	genbank	58_37c	+1	reviewed	missense	c.1438	p.G480C	1.000	HMMSmart_SM00369,superfamily_L domain-like	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
TMEM132B	0	genome.wustl.edu	37	12	126068613	126068618	+	In_Frame_Del	DEL	TCTTGT	TCTTGT	-	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	TCTTGT	TCTTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	12	126068613	126068618	TCTTGT	-	DEL	TMEM132B	ENST00000418253	human	ensembl	58_37c	+1	known	in_frame_del	c.1474_1479	p.CS493in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000	NULL	NULL	-	no_errors
TNFRSF8	0	genome.wustl.edu	37	1	12175747	12175747	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	12175747	12175747	T	A	SNP	TNFRSF8	NM_001243.3	human	genbank	58_37c	+1	reviewed	missense	c.907	p.Y303N	0.000	superfamily_TNF receptor-like	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like	-	no_errors
TXNRD1	0	genome.wustl.edu	37	12	104713335	104713335	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	12	104713335	104713335	C	T	SNP	TXNRD1	ENST00000429002	human	ensembl	58_37c	+1	known	missense	c.973	p.P325S	1.000	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain	HMMPfam_Glutaredoxin,HMMPfam_Pyr_redox_dim,superfamily_Thioredoxin-like,PatternScan_PYRIDINE_REDOX_1,HMMPfam_Pyr_redox_2,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain,superfamily_FAD/NAD(P)-binding domain	-	no_errors
USO1	0	genome.wustl.edu	37	4	76692017	76692033	+	Frame_Shift_Del	DEL	ACTTCTCTTTTAAAACA	ACTTCTCTTTTAAAACA	-	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	ACTTCTCTTTTAAAACA	ACTTCTCTTTTAAAACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	4	76692017	76692033	ACTTCTCTTTTAAAACA	-	DEL	USO1	NM_003715.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.320_336	p.F108fs	1.000:1.000:0.985:0.998:1.000:0.993:1.000:1.000:0.993:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.973	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
VPS11	0	genome.wustl.edu	37	11	118948974	118948974	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	11	118948974	118948974	C	T	SNP	VPS11	ENST00000300793	human	ensembl	58_37c	+1	known	missense	c.1850	p.S617L	0.999	NULL	HMMSmart_SM00184,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
VWDE	0	genome.wustl.edu	37	7	12391277	12391277	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	7	12391277	12391277	T	C	SNP	VWDE	NM_001135924.1	human	genbank	58_37c	-1	provisional	missense	c.3808	p.S1270G	0.010	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin	-	no_errors
WIZ	0	genome.wustl.edu	37	19	15536452	15536452	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	15536452	15536452	G	C	SNP	WIZ	NM_021241.2	human	genbank	58_37c	-1	validated	silent	c.1209	p.V403	0.997	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZNF560	0	genome.wustl.edu	37	19	9577765	9577765	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	9577765	9577765	G	A	SNP	ZNF560	NM_152476.2	human	genbank	58_37c	-1	validated	nonsense	c.1858	p.R620*	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF799	0	genome.wustl.edu	37	19	12501539	12501545	+	Frame_Shift_Del	DEL	TTCTCTC	TTCTCTC	-	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	TTCTCTC	TTCTCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	12501539	12501545	TTCTCTC	-	DEL	ZNF799	NM_001080821.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.1673_1667	p.R556fs	0.017:0.133:0.157:0.177:0.192:0.186:0.311	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF799	0	genome.wustl.edu	37	19	12501549	12501550	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	19	12501549	12501550	TG	-	DEL	ZNF799	NM_001080821.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.1663_1662	p.M555fs	0.984:0.994	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZYG11B	0	genome.wustl.edu	37	1	53267568	53267568	+	Silent	SNP	T	T	A	novel	unknown	TCGA-E9-A1R2-01A-11D-A14G-09	TCGA-E9-A1R2-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b321a2d9-5345-4891-b450-bfd696c6cfb0	bedecc9f-4e3f-4853-b683-2c901c6d3743	1	53267568	53267568	T	A	SNP	ZYG11B	NM_024646.2	human	genbank	58_37c	+1	validated	silent	c.1563	p.L521	0.996	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_RNI-like	-	no_errors
