Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCD4	0	genome.wustl.edu	37	14	74758989	74758989	+	Splice_Site	SNP	C	C	T	rs142443294	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	14	74758989	74758989	C	T	SNP	ABCD4	NM_005050.3	human	genbank	58_37c	-1	reviewed	splice_site	c.1118+1	e11+1	1.000	-	-	-	no_errors
ATCAY	0	genome.wustl.edu	37	19	3907867	3907867	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	19	3907867	3907867	G	A	SNP	ATCAY	NM_033064.4	human	genbank	58_37c	+1	reviewed	missense	c.494	p.R165H	1.000	NULL	HMMSmart_SM00516,superfamily_CRAL/TRIO domain	-	no_errors
BSN	0	genome.wustl.edu	37	3	49689363	49689363	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	3	49689363	49689363	C	T	SNP	BSN	NM_003458.3	human	genbank	58_37c	+1	reviewed	missense	c.2374	p.R792C	0.379	NULL	HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF	-	no_errors
CCDC144A	0	genome.wustl.edu	37	17	16638041	16638041	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	17	16638041	16638041	A	T	SNP	CCDC144A	NM_014695.1	human	genbank	58_37c	+1	provisional	missense	c.2456	p.H819L	0.170	NULL	NULL	-	no_errors
CDC27	0	genome.wustl.edu	37	17	45219311	45219311	+	Missense_Mutation	SNP	T	T	C	rs140737545	byFrequency	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	17	45219311	45219311	T	C	SNP	CDC27	NM_001114091.1	human	genbank	58_37c	-1	reviewed	missense	c.1477	p.I493V	1.000	superfamily_TPR-like	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
CLCN7	0	genome.wustl.edu	37	16	1497552	1497552	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	16	1497552	1497552	G	T	SNP	CLCN7	NM_001287.4	human	genbank	58_37c	-1	reviewed	silent	c.2091	p.S697	0.007	HMMPfam_CBS	HMMPfam_CBS,HMMSmart_CBS,HMMPfam_Voltage_CLC,superfamily_Cl-channel_core,superfamily_SSF54631	-	no_errors
CSTF1	0	genome.wustl.edu	37	20	54974292	54974292	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	20	54974292	54974292	C	T	SNP	CSTF1	NM_001033521.1	human	genbank	58_37c	+1	reviewed	silent	c.915	p.D305	0.159	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
DMD	0	genome.wustl.edu	37	X	31792301	31792301	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	X	31792301	31792301	G	A	SNP	DMD	NM_004006.2	human	genbank	58_37c	-1	reviewed	nonsense	c.7318	p.Q2440*	1.000	NULL	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,superfamily_Prefoldin,superfamily_t-snare proteins,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
DNAJC13	0	genome.wustl.edu	37	3	132213003	132213004	+	In_Frame_Ins	INS	-	-	CTT	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	3	132213003	132213004	-	CTT	INS	DNAJC13	NM_015268.3	human	genbank	58_37c	+1	validated	in_frame_ins	c.3841_3842	p.D1281in_frame_insAY	1.000:1.000	superfamily_ARM repeat	PatternScan_AA_TRNA_LIGASE_I,HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_ARM repeat	-	no_errors
ENAH	0	genome.wustl.edu	37	1	225702347	225702347	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	1	225702347	225702347	G	A	SNP	ENAH	NM_001008493.1	human	genbank	58_37c	-1	validated	missense	c.1169	p.T390I	1.000	NULL	HMMPfam_WH1,HMMSmart_SM00461,HMMPfam_VASP_tetra,superfamily_PH domain-like	-	no_errors
ENSG00000166007	0	genome.wustl.edu	37	11	55062037	55062038	+	In_Frame_Ins	INS	-	-	TGAGTA	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	11	55062037	55062038	-	TGAGTA	INS	ENSG00000166007	ENST00000309470	human	ensembl	58_37c	-1	known	in_frame_ins	c.686_685	p.229in_frame_insIL	0.033:0.033	NULL	HMMPfam_zf-B_box,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
ENSG00000198888	0	genome.wustl.edu	37	MT	3916	3916	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	MT	3916	3916	G	A	SNP	ENSG00000198888	ENST00000361390	human	ensembl	58_37c	+1	known	missense	c.610	p.E204K	NULL	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_2	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_stop_codon:mismatch_between_exon_seq_and_reference
ERBB2	0	genome.wustl.edu	37	17	37880261	37880261	+	Missense_Mutation	SNP	G	G	T	rs121913468	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	17	37880261	37880261	G	T	SNP	ERBB2	NM_004448.2	human	genbank	58_37c	+1	reviewed	missense	c.2305	p.D769Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_YLP,HMMPfam_Furin-like,HMMSmart_SM00261,PatternScan_PROTEIN_KINASE_TYR,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_EF_HAND_1,superfamily_L domain-like	-	no_errors
FAM63A	0	genome.wustl.edu	37	1	150969810	150969810	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	1	150969810	150969810	C	T	SNP	FAM63A	NM_018379.4	human	genbank	58_37c	-1	validated	missense	c.1363	p.E455K	0.966	NULL	HMMPfam_DUF544	-	no_errors
GLUL	0	genome.wustl.edu	37	1	182355487	182355487	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	1	182355487	182355487	G	A	SNP	GLUL	NM_001033044.2	human	genbank	58_37c	-1	reviewed	nonsense	c.379	p.Q127*	1.000	HMMPfam_Gln-synt_C,superfamily_Glutamine synthetase/guanido kinase	HMMPfam_Gln-synt_C,PatternScan_GLNA_ATP,HMMPfam_Gln-synt_N,PatternScan_GLNA_1,superfamily_Glutamine synthetase N-terminal domain,superfamily_Glutamine synthetase/guanido kinase	-	no_errors
HSD17B3	0	genome.wustl.edu	37	9	99064321	99064321	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	9	99064321	99064321	C	T	SNP	HSD17B3	NM_000197.1	human	genbank	58_37c	-1	reviewed	silent	c.66	p.A22	0.384	NULL	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors
KDELC2	0	genome.wustl.edu	37	11	108361856	108361856	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	11	108361856	108361856	G	T	SNP	KDELC2	NM_153705.4	human	genbank	58_37c	-1	validated	missense	c.241	p.P81T	0.160	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin	HMMSmart_SM00557,HMMSmart_SM00672,superfamily_E set domains,HMMPfam_Filamin	-	no_errors
KIAA0146	0	genome.wustl.edu	37	8	48647918	48647918	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	8	48647918	48647918	G	C	SNP	KIAA0146	NM_001080394.1	human	genbank	58_37c	+1	predicted	missense	c.2654	p.C885S	0.991	NULL	NULL	-	no_errors
LHX9	0	genome.wustl.edu	37	1	197890707	197890707	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	1	197890707	197890707	C	T	SNP	LHX9	NM_020204.2	human	genbank	58_37c	+1	reviewed	silent	c.651	p.N217	0.547	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
LOC100132733	0	genome.wustl.edu	37	1	143196693	143196693	+	Silent	SNP	C	T	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	1	143196693	143196693	C	T	SNP	LOC100132733	XM_001715342.2	human	genbank	58_37c	-1	model	silent	c.1452	p.Q484	0.597	NULL	NULL	-	no_errors
LOC100287098	0	genome.wustl.edu	37	8	145662322	145662322	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	8	145662322	145662322	A	G	SNP	LOC100287098	XM_002342882.1	human	genbank	58_37c	+1	model	silent	c.411	p.V137	0.001	NULL	NULL	-	no_errors
LOC100287993	0	genome.wustl.edu	37	20	29611997	29611997	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	20	29611997	29611997	T	C	SNP	LOC100287993	XM_002344214.1	human	genbank	58_37c	-1	model	silent	c.489	p.V163	0.000	NULL	NULL	-	no_errors
LOC100289027	0	genome.wustl.edu	37	9	45363680	45363680	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	9	45363680	45363680	C	T	SNP	LOC100289027	XM_002344254.1	human	genbank	58_37c	+1	model	missense	c.200	p.A67V	0.416	HMMPfam_CDK2AP	HMMPfam_CDK2AP	-	no_errors
LOC653061	0	genome.wustl.edu	37	15	23609308	23609311	+	Frame_Shift_Del	DEL	CAGA	CAGA	-	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	CAGA	CAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	15	23609308	23609311	CAGA	-	DEL	LOC653061	XM_002343325.1	human	genbank	58_37c	+1	model	frame_shift_del	c.1239_1242	p.R414fs	0.003:0.004:0.004:0.004	NULL	NULL	-	no_errors
LOC653061	0	genome.wustl.edu	37	15	23609317	23609319	+	In_Frame_Del	DEL	TGG	TGG	-	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	15	23609317	23609319	TGG	-	DEL	LOC653061	XM_002343325.1	human	genbank	58_37c	+1	model	in_frame_del	c.1248_1250	p.G417in_frame_del	0.001:0.004:0.006	NULL	NULL	-	no_errors
MED13	0	genome.wustl.edu	37	17	60088032	60088032	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	17	60088032	60088032	T	A	SNP	MED13	NM_005121.2	human	genbank	58_37c	-1	reviewed	nonsense	c.1846	p.K616*	1.000	NULL	HMMPfam_TRAP_240kDa	-	no_errors
MELK	0	genome.wustl.edu	37	9	36594707	36594707	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	9	36594707	36594707	A	G	SNP	MELK	NM_014791.2	human	genbank	58_37c	+1	provisional	missense	c.344	p.Q115R	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMPfam_KA1,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF103243	-	no_errors
MKRN3	0	genome.wustl.edu	37	15	23812334	23812334	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	15	23812334	23812334	C	T	SNP	MKRN3	NM_005664.3	human	genbank	58_37c	+1	reviewed	missense	c.1405	p.R469W	0.000	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
MPI	0	genome.wustl.edu	37	15	75190052	75190052	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	15	75190052	75190052	G	A	SNP	MPI	NM_002435.1	human	genbank	58_37c	+1	reviewed	missense	c.1253	p.R418H	1.000	superfamily_RmlC-like cupins	HMMPfam_PMI_typeI,superfamily_RmlC-like cupins,PatternScan_PMI_I_1,PatternScan_PMI_I_2	-	no_errors
MYH2	0	genome.wustl.edu	37	17	10432037	10432037	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	17	10432037	10432037	A	G	SNP	MYH2	NM_001100112.1	human	genbank	58_37c	-1	reviewed	silent	c.3714	p.A1238	0.074	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NBPF1	0	genome.wustl.edu	37	1	16891365	16891365	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	1	16891365	16891365	G	A	SNP	NBPF1	NM_017940.3	human	genbank	58_37c	-1	predicted	missense	c.3065	p.T1022M	0.001	NULL	HMMPfam_DUF1220	-	no_errors
NCRNA00164	0	genome.wustl.edu	37	2	133015485	133015485	+	RNA	SNP	C	C	A	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	2	133015485	133015485	C	A	SNP	NCRNA00164	NR_027020.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.001	-	-	-	pseudogene
NDUFA7	0	genome.wustl.edu	37	19	8381508	8381508	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	19	8381508	8381508	G	A	SNP	NDUFA7	NM_005001.2	human	genbank	58_37c	-1	validated	silent	c.123	p.L41	0.998	HMMPfam_CI-B14_5a	HMMPfam_CI-B14_5a	-	no_errors
OR4C13	0	genome.wustl.edu	37	11	49974275	49974275	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	11	49974275	49974275	G	A	SNP	OR4C13	NM_001001955.2	human	genbank	58_37c	+1	validated	missense	c.301	p.G101R	0.251	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCMTD1	0	genome.wustl.edu	37	8	52733164	52733164	+	Missense_Mutation	SNP	G	G	C	rs149898988	byFrequency	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	8	52733164	52733164	G	C	SNP	PCMTD1	NM_052937.2	human	genbank	58_37c	-1	validated	missense	c.821	p.P274R	1.000	NULL	HMMPfam_PCMT,PatternScan_PCMT,superfamily_SSF53335	-	no_errors
PEG3	0	genome.wustl.edu	37	19	57325512	57325512	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	19	57325512	57325512	A	G	SNP	PEG3	NM_006210.2	human	genbank	58_37c	-1	reviewed	missense	c.4298	p.I1433T	0.000	NULL	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PI15	0	genome.wustl.edu	37	8	75761435	75761435	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	8	75761435	75761435	G	C	SNP	PI15	NM_015886.3	human	genbank	58_37c	+1	reviewed	missense	c.724	p.D242H	1.000	NULL	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular,PatternScan_CRISP_1,PatternScan_CRISP_2	-	no_errors
PIGO	0	genome.wustl.edu	37	9	35095358	35095364	+	Frame_Shift_Del	DEL	GCGAAAA	GCGAAAA	-	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	GCGAAAA	GCGAAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	9	35095358	35095364	GCGAAAA	-	DEL	PIGO	NM_032634.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.205_199	p.F67fs	0.977:0.971:0.994:0.994:0.995:1.000:0.998	superfamily_Alkaline phosphatase-like	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178927980	178927980	+	Missense_Mutation	SNP	T	T	C	rs121913272	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	3	178927980	178927980	T	C	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1258	p.C420R	1.000	HMMSmart_C2,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLXNA1	0	genome.wustl.edu	37	3	126736504	126736504	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	3	126736504	126736504	C	T	SNP	PLXNA1	NM_032242.3	human	genbank	58_37c	+1	validated	silent	c.3444	p.L1148	1.000	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00423,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl,superfamily_E set domains,superfamily_Plexin repeat	-	no_errors
RBL1	0	genome.wustl.edu	37	20	35627233	35627233	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	20	35627233	35627233	C	A	SNP	RBL1	NM_002895.2	human	genbank	58_37c	-1	reviewed	missense	c.3136	p.V1046F	0.999	NULL	HMMPfam_RB_B,HMMPfam_RB_A,HMMSmart_SM00385,superfamily_Cyclin-like	-	no_errors
RNF41	0	genome.wustl.edu	37	12	56607765	56607765	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	12	56607765	56607765	C	A	SNP	RNF41	NM_005785.2	human	genbank	58_37c	-1	reviewed	nonsense	c.67	p.G23*	1.000	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	HMMSmart_SM00184,superfamily_TRAF domain-like,HMMPfam_USP8_interact,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
RUNX1	0	genome.wustl.edu	37	21	36171700	36171715	+	Frame_Shift_Del	DEL	CCAGGTATTGGTAGGA	CCAGGTATTGGTAGGA	-	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	CCAGGTATTGGTAGGA	CCAGGTATTGGTAGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	21	36171700	36171715	CCAGGTATTGGTAGGA	-	DEL	RUNX1	NM_001754.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.865_850	p.S284fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.989:1.000:1.000:1.000:1.000:1.000:0.940:1.000:1.000	NULL	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
SLC2A3	0	genome.wustl.edu	37	12	8086481	8086481	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	12	8086481	8086481	T	G	SNP	SLC2A3	NM_006931.2	human	genbank	58_37c	-1	validated	silent	c.33	p.I11	0.988	superfamily_MFS general substrate transporter	HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1,PatternScan_SUGAR_TRANSPORT_2,superfamily_MFS general substrate transporter	-	no_errors
SPTAN1	0	genome.wustl.edu	37	9	131371190	131371190	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	9	131371190	131371190	A	C	SNP	SPTAN1	NM_001130438.1	human	genbank	58_37c	+1	validated	missense	c.4529	p.Q1510P	1.000	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_efhand_Ca_insen,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473	-	no_errors
SULT1C3	0	genome.wustl.edu	37	2	108875465	108875486	+	Frame_Shift_Del	DEL	AAACTTGGTCAGGTGATGTTAT	AAACTTGGTCAGGTGATGTTAT	-	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	AAACTTGGTCAGGTGATGTTAT	AAACTTGGTCAGGTGATGTTAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	2	108875465	108875486	AAACTTGGTCAGGTGATGTTAT	-	DEL	SULT1C3	ENST00000376700	human	ensembl	58_37c	+1	known	frame_shift_del	c.665_686	p.W224fs	0.420:0.382:0.018:0.002:0.000:0.000:0.001:0.000:0.000:0.000:0.002:0.395:0.396:0.268:0.312:0.255:0.004:0.004:0.004:0.002:0.004:0.025	HMMPfam_Sulfotransfer_1,superfamily_SSF52540	HMMPfam_Sulfotransfer_1,superfamily_SSF52540	-	no_errors
TRIM36	0	genome.wustl.edu	37	5	114482989	114482989	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	5	114482989	114482989	C	T	SNP	TRIM36	NM_018700.3	human	genbank	58_37c	-1	reviewed	missense	c.401	p.R134Q	1.000	superfamily_RING/U-box	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_fn3,superfamily_Fibronectin type III,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_B-box zinc-binding domain,superfamily_RING/U-box	-	no_errors
TRIM77	0	genome.wustl.edu	37	11	89450746	89450746	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	11	89450746	89450746	G	T	SNP	TRIM77	XM_002343107.1	human	genbank	58_37c	+1	model	missense	c.1059	p.W353C	0.002	HMMPfam_SPRY	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_B-box zinc-binding domain,superfamily_RING/U-box	-	no_errors
ZFPM2	0	genome.wustl.edu	37	8	106815386	106815386	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	8	106815386	106815386	G	A	SNP	ZFPM2	NM_012082.3	human	genbank	58_37c	+1	reviewed	missense	c.3076	p.A1026T	0.482	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF439	0	genome.wustl.edu	37	19	11979122	11979122	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1R5-01A-11D-A14K-09	TCGA-E9-A1R5-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a04ba6e9-2bc4-4cab-96d8-0820e0390d84	bda47415-2577-4d09-874a-2a85e999c9cd	19	11979122	11979122	A	T	SNP	ZNF439	NM_152262.2	human	genbank	58_37c	+1	provisional	missense	c.1238	p.K413M	0.208	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
