Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACAN	0	genome.wustl.edu	37	15	89388987	89388987	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	15	89388987	89388987	G	T	SNP	ACAN	NM_013227.3	human	genbank	58_37c	+1	reviewed	nonsense	c.1303	p.E435*	0.000	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,HMMPfam_Lectin_C,HMMSmart_SM00034,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_V-set,superfamily_Complement control module/SCR domain,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1,superfamily_Immunoglobulin,superfamily_EGF/Laminin	-	no_errors
AGPAT6	0	genome.wustl.edu	37	8	41467297	41467297	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	8	41467297	41467297	G	A	SNP	AGPAT6	NM_178819.3	human	genbank	58_37c	+1	validated	missense	c.359	p.R120Q	1.000	NULL	HMMPfam_Acyltransferase,HMMSmart_SM00563	-	no_errors
AHCTF1	0	genome.wustl.edu	37	1	247007193	247007193	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	247007193	247007193	T	G	SNP	AHCTF1	NM_015446.4	human	genbank	58_37c	-1	validated	missense	c.6429	p.L2143F	0.993	NULL	PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
AKD1	0	genome.wustl.edu	37	6	109850199	109850201	+	In_Frame_Del	DEL	AAC	AAC	-	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	6	109850199	109850201	AAC	-	DEL	AKD1	ENST00000355283	human	ensembl	58_37c	-1	known	in_frame_del	c.885_883	p.V295in_frame_del	0.003:0.000:0.000	NULL	HMMPfam_ADK,HMMPfam_YHS,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ANO4	0	genome.wustl.edu	37	12	101490420	101490420	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	12	101490420	101490420	C	T	SNP	ANO4	NM_178826.3	human	genbank	58_37c	+1	validated	silent	c.1740	p.L580	0.269	NULL	HMMPfam_DUF590	-	no_errors
ANXA2P2	0	genome.wustl.edu	37	9	33625451	33625461	+	RNA	DEL	GAGGTTACAGT	GAGGTTACAGT	-	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	GAGGTTACAGT	GAGGTTACAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	9	33625451	33625461	GAGGTTACAGT	-	DEL	ANXA2P2	NR_003573.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.016:0.018:0.019:0.020:0.020:0.019:0.018:0.017:0.015:0.013:0.014	-	-	-	pseudogene
ATP2B4	0	genome.wustl.edu	37	1	203680228	203680228	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	203680228	203680228	C	T	SNP	ATP2B4	NM_001684.3	human	genbank	58_37c	+1	reviewed	missense	c.2023	p.R675C	1.000	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
CASC4	0	genome.wustl.edu	37	15	44615184	44615184	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	15	44615184	44615184	T	A	SNP	CASC4	NM_138423.2	human	genbank	58_37c	+1	reviewed	missense	c.349	p.S117T	1.000	NULL	NULL	-	no_errors
CCDC46	0	genome.wustl.edu	37	17	63898300	63898300	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	17	63898300	63898300	T	C	SNP	CCDC46	NM_145036.3	human	genbank	58_37c	-1	validated	silent	c.2133	p.Q711	1.000	NULL	NULL	-	no_errors
CNIH4	0	genome.wustl.edu	37	1	224566784	224566784	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	224566784	224566784	C	T	SNP	CNIH4	ENST00000366856	human	ensembl	58_37c	+1	known	missense	c.406	p.P136S	0.001	NULL	HMMPfam_Cornichon	-	no_errors
DDX11	0	genome.wustl.edu	37	12	31238023	31238023	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	12	31238023	31238023	G	A	SNP	DDX11	NM_152438.1	human	genbank	58_37c	+1	reviewed	missense	c.601	p.E201K	0.986	HMMSmart_SM00488,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00488,HMMSmart_SM00491,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000198888	0	genome.wustl.edu	37	MT	3688	3688	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	MT	3688	3688	G	A	SNP	ENSG00000198888	ENST00000361390	human	ensembl	58_37c	+1	known	missense	c.382	p.A128T	NULL	HMMPfam_NADHdh	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_stop_codon:mismatch_between_exon_seq_and_reference
ENSG00000223709	0	genome.wustl.edu	37	11	89796094	89796095	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	11	89796094	89796095	-	A	INS	ENSG00000223709	ENST00000436580	human	ensembl	58_37c	-1	known	frame_shift_ins	c.70_71	p.P24fs	0.583:0.597	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMSmart_SM00449,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
EXT2	0	genome.wustl.edu	37	11	44219400	44219400	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	11	44219400	44219400	C	T	SNP	EXT2	NM_000401.3	human	genbank	58_37c	+1	reviewed	missense	c.1366	p.P456S	1.000	NULL	HMMPfam_Exostosin,HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
FCGBP	0	genome.wustl.edu	37	19	40373992	40373992	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	19	40373992	40373992	C	G	SNP	FCGBP	NM_003890.2	human	genbank	58_37c	-1	validated	missense	c.12086	p.G4029A	0.001	HMMSmart_VWC,HMMPfam_TIL_assoc,HMMSmart_FOLN	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors
GATA3	0	genome.wustl.edu	37	10	8115941	8115942	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	10	8115941	8115942	-	T	INS	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1290_1291	p.G431fs	1.000:1.000	NULL	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GSK3A	0	genome.wustl.edu	37	19	42738739	42738739	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	19	42738739	42738739	T	C	SNP	GSK3A	NM_019884.2	human	genbank	58_37c	-1	validated	missense	c.758	p.D253G	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
HIST1H2AH	0	genome.wustl.edu	37	6	27115041	27115041	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	6	27115041	27115041	G	A	SNP	HIST1H2AH	NM_080596.1	human	genbank	58_37c	+1	reviewed	missense	c.134	p.G45E	1.000	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00414,PatternScan_HISTONE_H2A,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
IL7R	0	genome.wustl.edu	37	5	35874629	35874629	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	5	35874629	35874629	T	C	SNP	IL7R	NM_002185.2	human	genbank	58_37c	+1	reviewed	missense	c.785	p.V262A	0.142	NULL	PatternScan_HEMATOPO_REC_S_F1,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
INO80D	0	genome.wustl.edu	37	2	206869432	206869432	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	2	206869432	206869432	G	T	SNP	INO80D	NM_017759.4	human	genbank	58_37c	-1	validated	missense	c.2744	p.S915Y	1.000	NULL	NULL	-	no_errors
IQCA1	0	genome.wustl.edu	37	2	237240002	237240002	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	2	237240002	237240002	C	T	SNP	IQCA1	NM_024726.3	human	genbank	58_37c	-1	provisional	silent	c.2373	p.K791	1.000	NULL	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ITGAL	0	genome.wustl.edu	37	16	30515580	30515580	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	16	30515580	30515580	A	C	SNP	ITGAL	NM_002209.2	human	genbank	58_37c	+1	reviewed	silent	c.2230	p.R744	0.000	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_vWA-like,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain	-	no_errors
JAK1	0	genome.wustl.edu	37	1	65335075	65335075	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	65335075	65335075	C	T	SNP	JAK1	NM_002227.2	human	genbank	58_37c	-1	reviewed	missense	c.566	p.C189Y	1.000	HMMSmart_B41	HMMSmart_SH2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550	-	no_errors
KCTD3	0	genome.wustl.edu	37	1	215768802	215768802	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	215768802	215768802	C	T	SNP	KCTD3	NM_016121.3	human	genbank	58_37c	+1	validated	nonsense	c.922	p.Q308*	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00225,HMMSmart_SM00320,HMMPfam_K_tetra,superfamily_WD40 repeat-like,superfamily_POZ domain,PatternScan_WD_REPEATS_1	-	no_errors
LOC642587	0	genome.wustl.edu	37	1	209605637	209605648	+	In_Frame_Del	DEL	AGCAGCAGCAGC	AGCAGCAGCAGC	-	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	AGCAGCAGCAGC	AGCAGCAGCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	209605637	209605648	AGCAGCAGCAGC	-	DEL	LOC642587	NM_001104548.1	human	genbank	58_37c	+1	validated	in_frame_del	c.252_263	p.AAAA88in_frame_del	0.000:0.000:0.000:0.000:0.000:0.002:0.000:0.000:0.000:0.000:0.000:0.000	NULL	NULL	-	no_errors
LOC646090	0	genome.wustl.edu	37	15	20448129	20448129	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	15	20448129	20448129	C	T	SNP	LOC646090	XR_017120.3	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.997	-	-	-	pseudogene
MAP3K4	0	genome.wustl.edu	37	6	161519351	161519353	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	6	161519351	161519353	CTG	-	DEL	MAP3K4	NM_005922.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3566_3568	p.A1193in_frame_del	0.857:0.937:0.950	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MASP1	0	genome.wustl.edu	37	3	186953750	186953750	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	3	186953750	186953750	G	A	SNP	MASP1	NM_139125.3	human	genbank	58_37c	-1	reviewed	missense	c.1909	p.R637C	1.000	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB,HMMPfam_Trypsin,HMMSmart_Tryp_SPc,HMMSmart_EGF_CA,superfamily_Pept_Ser_Cys,PatternScan_EGF_2,superfamily_Complement_control_module,PatternScan_EGF_CA,PatternScan_TRYPSIN_SER,superfamily_SSF57196	-	no_errors
MEF2A	0	genome.wustl.edu	37	15	100252710	100252715	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	CAGCAG	CAGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	15	100252710	100252715	CAGCAG	-	DEL	MEF2A	NM_005587.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1234_1239	p.QQ415in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_SRF-TF,HMMSmart_MADS,PatternScan_MADS_BOX_1,superfamily_TF_MADSbox	-	no_errors
MKRN3	0	genome.wustl.edu	37	15	23811660	23811660	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	15	23811660	23811660	G	A	SNP	MKRN3	NM_005664.3	human	genbank	58_37c	+1	reviewed	missense	c.731	p.C244Y	1.000	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
MOSC2	0	genome.wustl.edu	37	1	220953546	220953546	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	220953546	220953546	C	T	SNP	MOSC2	NM_017898.3	human	genbank	58_37c	+1	provisional	silent	c.849	p.V283	0.805	HMMPfam_MOSC,superfamily_PK beta-barrel domain-like	HMMPfam_MOSC,HMMPfam_MOSC_N,superfamily_PK beta-barrel domain-like	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195507762	195507762	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	3	195507762	195507762	T	G	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	silent	c.10305	p.T3435	0.001	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1266479	1266479	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	11	1266479	1266479	G	T	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	missense	c.8378	p.G2793V	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MYH8	0	genome.wustl.edu	37	17	10298758	10298758	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	17	10298758	10298758	C	G	SNP	MYH8	NM_002472.2	human	genbank	58_37c	-1	reviewed	missense	c.4654	p.A1552P	1.000	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NFATC4	0	genome.wustl.edu	37	14	24836347	24836347	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	14	24836347	24836347	A	C	SNP	NFATC4	NM_001136022.1	human	genbank	58_37c	+1	reviewed	silent	c.87	p.S29	0.000	NULL	HMMPfam_TIG,HMMSmart_IPT,superfamily_P53_like_DNA_bnd,HMMPfam_RHD,superfamily_Ig_E-set	-	no_errors
NRP1	0	genome.wustl.edu	37	10	33469188	33469188	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	10	33469188	33469188	G	A	SNP	NRP1	NM_003873.5	human	genbank	58_37c	-1	validated	missense	c.2588	p.A863V	1.000	NULL	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,superfamily_Galactose-binding domain-like	-	no_errors
NUDT11	0	genome.wustl.edu	37	X	51239296	51239309	+	Frame_Shift_Del	DEL	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC	-	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	X	51239296	51239309	TCCTCGAGGCAGCC	-	DEL	NUDT11	ENST00000375992	human	ensembl	58_37c	-1	known	frame_shift_del	c.1	p.M1fs	0.928	NULL	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase,PatternScan_NUDIX	-	no_errors
OR2AG1	0	genome.wustl.edu	37	11	6806874	6806874	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	11	6806874	6806874	G	A	SNP	OR2AG1	NM_001004489.2	human	genbank	58_37c	+1	validated	missense	c.606	p.M202I	0.722	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
ORM2	0	genome.wustl.edu	37	9	117092487	117092487	+	Silent	SNP	G	A	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	9	117092487	117092487	G	A	SNP	ORM2	ENST00000412657	human	ensembl	58_37c	+1	known	silent	c.303	p.K101	0.000	NULL	NULL	-	no_errors
PEX1	0	genome.wustl.edu	37	7	92119083	92119083	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	7	92119083	92119083	T	C	SNP	PEX1	NM_000466.2	human	genbank	58_37c	-1	reviewed	missense	c.3581	p.D1194G	0.993	NULL	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_ADC-like,HMMPfam_PEX-1N,HMMPfam_PEX-2N,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Cdc48 domain 2-like	-	no_errors
PHLPP1	0	genome.wustl.edu	37	18	60563042	60563042	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	18	60563042	60563042	T	G	SNP	PHLPP1	NM_194449.2	human	genbank	58_37c	+1	validated	missense	c.706	p.F236V	0.998	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	HMMPfam_LRR_1,HMMPfam_PH,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00369,HMMPfam_PP2C,HMMSmart_SM00364,superfamily_L domain-like	-	no_errors
PHRF1	0	genome.wustl.edu	37	11	605238	605238	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	11	605238	605238	G	A	SNP	PHRF1	NM_020901.2	human	genbank	58_37c	+1	validated	silent	c.1272	p.A424	0.962	NULL	HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SSF57850	-	no_errors
PJA2	0	genome.wustl.edu	37	5	108714080	108714080	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	5	108714080	108714080	C	T	SNP	PJA2	NM_014819.4	human	genbank	58_37c	-1	validated	missense	c.1108	p.E370K	0.984	NULL	HMMSmart_RING,PatternScan_N6_MTASE,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
PRKCB	0	genome.wustl.edu	37	16	24135281	24135281	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	16	24135281	24135281	G	A	SNP	PRKCB	NM_002738.6	human	genbank	58_37c	+1	reviewed	silent	c.1044	p.L348	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_Cysteine-rich domain	-	no_errors
PRSS3	0	genome.wustl.edu	37	9	33797959	33797959	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	9	33797959	33797959	C	G	SNP	PRSS3	NM_007343.2	human	genbank	58_37c	+1	reviewed	missense	c.504	p.I168M	1.000	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS	-	no_errors
PVRL4	0	genome.wustl.edu	37	1	161059016	161059016	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	161059016	161059016	G	A	SNP	PVRL4	NM_030916.2	human	genbank	58_37c	-1	validated	missense	c.71	p.S24L	0.554	HMMPfam_V-set	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_SSF48726	-	no_errors
RGS3	0	genome.wustl.edu	37	9	116224016	116224016	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	9	116224016	116224016	A	G	SNP	RGS3	NM_144488.4	human	genbank	58_37c	+1	reviewed	missense	c.110	p.N37S	0.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RGS,HMMSmart_SM00315,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Regulator of G-protein signaling RGS,superfamily_PH domain-like	-	no_errors
RP1	0	genome.wustl.edu	37	8	55540310	55540310	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	8	55540310	55540310	C	T	SNP	RP1	NM_006269.1	human	genbank	58_37c	+1	reviewed	nonsense	c.3868	p.Q1290*	0.962	NULL	HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837	-	no_errors
RPTOR	0	genome.wustl.edu	37	17	78704422	78704422	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	17	78704422	78704422	G	T	SNP	RPTOR	NM_020761.2	human	genbank	58_37c	+1	reviewed	silent	c.570	p.S190	0.962	NULL	HMMPfam_HEAT,HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40	-	no_errors
SALL1	0	genome.wustl.edu	37	16	51175500	51175500	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	16	51175500	51175500	G	T	SNP	SALL1	NM_002968.2	human	genbank	58_37c	-1	reviewed	silent	c.633	p.S211	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SDC2	0	genome.wustl.edu	37	8	97605791	97605791	+	Missense_Mutation	SNP	C	C	A	rs137986371	byFrequency	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	8	97605791	97605791	C	A	SNP	SDC2	NM_002998.3	human	genbank	58_37c	+1	reviewed	missense	c.144	p.D48E	0.402	HMMPfam_Syndecan	HMMPfam_Syndecan,PatternScan_SYNDECAN,HMMSmart_SM00294	-	no_errors
SIGLEC1	0	genome.wustl.edu	37	20	3682202	3682202	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	20	3682202	3682202	G	T	SNP	SIGLEC1	NM_023068.3	human	genbank	58_37c	-1	reviewed	missense	c.1315	p.P439T	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
SLC35B3	0	genome.wustl.edu	37	6	8417217	8417217	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	6	8417217	8417217	C	T	SNP	SLC35B3	NM_001142540.1	human	genbank	58_37c	-1	validated	silent	c.885	p.R295	1.000	HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE	HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors
SSC5D	0	genome.wustl.edu	37	19	56029199	56029200	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	19	56029199	56029200	-	A	INS	SSC5D	NM_001144950.1	human	genbank	58_37c	+1	provisional	frame_shift_ins	c.3556_3557	p.H1186fs	0.001:0.000	NULL	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like	-	no_errors
STAT3	0	genome.wustl.edu	37	17	40497585	40497585	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	17	40497585	40497585	C	T	SNP	STAT3	NM_139276.2	human	genbank	58_37c	-1	reviewed	missense	c.364	p.A122T	0.992	HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain	HMMPfam_SH2,superfamily_p53-like transcription factors,HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_STAT,superfamily_SH2 domain	-	no_errors
STXBP5L	0	genome.wustl.edu	37	3	121137241	121137241	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	3	121137241	121137241	C	T	SNP	STXBP5L	NM_014980.2	human	genbank	58_37c	+1	validated	missense	c.3356	p.P1119L	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
TAF13	0	genome.wustl.edu	37	1	109617632	109617632	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	109617632	109617632	C	A	SNP	TAF13	NM_005645.3	human	genbank	58_37c	-1	reviewed	missense	c.83	p.R28I	1.000	NULL	HMMPfam_TFIID-18kDa,superfamily_Histone-fold	-	no_errors
TEP1	0	genome.wustl.edu	37	14	20876196	20876196	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	14	20876196	20876196	G	C	SNP	TEP1	NM_007110.4	human	genbank	58_37c	-1	reviewed	missense	c.403	p.H135D	0.000	NULL	HMMSmart_SM00320,HMMPfam_NACHT,HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TMEM131	0	genome.wustl.edu	37	2	98422132	98422132	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	2	98422132	98422132	T	C	SNP	TMEM131	NM_015348.1	human	genbank	58_37c	-1	validated	missense	c.2090	p.N697S	1.000	NULL	NULL	-	no_errors
TPRKB	0	genome.wustl.edu	37	2	73957812	73957812	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	2	73957812	73957812	G	C	SNP	TPRKB	NM_016058.2	human	genbank	58_37c	-1	validated	missense	c.316	p.L106V	1.000	HMMPfam_CGI-121	HMMPfam_CGI-121	-	no_errors
TRPM3	0	genome.wustl.edu	37	9	73152123	73152123	+	Missense_Mutation	SNP	C	T	T	rs147000092	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	9	73152123	73152123	C	T	SNP	TRPM3	ENST00000396280	human	ensembl	58_37c	-1	known	missense	c.3415	p.G1139R	0.000	NULL	HMMPfam_Ion_trans	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
UBR4	0	genome.wustl.edu	37	1	19439335	19439335	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	1	19439335	19439335	C	T	SNP	UBR4	NM_020765.2	human	genbank	58_37c	-1	validated	silent	c.11484	p.L3828	0.998	superfamily_ARM repeat	HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors
UNC80	0	genome.wustl.edu	37	2	210841715	210841715	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	2	210841715	210841715	A	G	SNP	UNC80	NM_032504.1	human	genbank	58_37c	+1	validated	missense	c.8653	p.I2885V	1.000	NULL	NULL	-	no_errors
USP36	0	genome.wustl.edu	37	17	76798549	76798554	+	In_Frame_Del	DEL	TTTTTC	TTTTTC	-	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	TTTTTC	TTTTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	17	76798549	76798554	TTTTTC	-	DEL	USP36	NM_025090.3	human	genbank	58_37c	-1	validated	in_frame_del	c.2879_2874	p.KK959in_frame_del	0.178:0.173:0.043:0.038:0.100:0.107	NULL	HMMPfam_UCH,PatternScan_IG_MHC,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
VEZF1	0	genome.wustl.edu	37	17	56056605	56056607	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	17	56056605	56056607	TGC	-	DEL	VEZF1	NM_007146.2	human	genbank	58_37c	-1	validated	in_frame_del	c.1046_1044	p.Q352in_frame_del	0.940:0.945:0.948	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
WDR66	0	genome.wustl.edu	37	12	122359379	122359381	+	In_Frame_Del	DEL	AAC	AAC	-	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	12	122359379	122359381	AAC	-	DEL	WDR66	NM_144668.4	human	genbank	58_37c	+1	validated	in_frame_del	c.168_170	p.T57in_frame_del	0.001:0.000:0.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,superfamily_EF-hand	-	no_errors
WWC1	0	genome.wustl.edu	37	5	167798457	167798457	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	5	167798457	167798457	T	A	SNP	WWC1	NM_015238.2	human	genbank	58_37c	+1	reviewed	missense	c.148	p.C50S	1.000	superfamily_WW domain	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
ZNF330	0	genome.wustl.edu	37	4	142150807	142150807	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1R7-01A-11D-A14K-09	TCGA-E9-A1R7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3991854-6634-4428-bef7-a7d9ad9cca30	dbd03fe1-1392-455f-a634-69b59d0ef3aa	4	142150807	142150807	C	A	SNP	ZNF330	NM_014487.4	human	genbank	58_37c	+1	validated	missense	c.374	p.T125N	0.998	HMMPfam_NOA36	HMMPfam_NOA36	-	no_errors
