Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACTR5	0	genome.wustl.edu	37	20	37380924	37380924	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	20	37380924	37380924	C	A	SNP	ACTR5	NM_024855.3	human	genbank	58_37c	+1	validated	silent	c.756	p.I252	0.010	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_2,superfamily_SSF53067	-	no_errors
ANKRD44	0	genome.wustl.edu	37	2	197865158	197865158	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	2	197865158	197865158	C	G	SNP	ANKRD44	NM_153697.1	human	genbank	58_37c	-1	provisional	missense	c.2429	p.R810T	0.486	superfamily_ANK	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
APOB48R	0	genome.wustl.edu	37	16	28507082	28507082	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	16	28507082	28507082	G	C	SNP	APOB48R	NM_018690.2	human	genbank	58_37c	+1	reviewed	silent	c.720	p.G240	0.003	NULL	NULL	-	no_errors
ATR	0	genome.wustl.edu	37	3	142274964	142274964	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	3	142274964	142274964	T	A	SNP	ATR	NM_001184.3	human	genbank	58_37c	-1	reviewed	missense	c.2096	p.D699V	1.000	superfamily_ARM repeat	HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),HMMPfam_UME,HMMSmart_SM00802,superfamily_ARM repeat,PatternScan_PI3_4_KINASE_2,superfamily_TPR-like	-	no_errors
BACH2	0	genome.wustl.edu	37	6	90660867	90660867	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	6	90660867	90660867	G	A	SNP	BACH2	NM_021813.2	human	genbank	58_37c	-1	validated	missense	c.958	p.P320S	0.273	NULL	HMMSmart_BTB,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA,superfamily_BTB/POZ_fold,HMMPfam_bZIP_1,HMMPfam_BTB	-	no_errors
BAG4	0	genome.wustl.edu	37	8	38067546	38067546	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	8	38067546	38067546	C	T	SNP	BAG4	NM_004874.2	human	genbank	58_37c	+1	reviewed	silent	c.909	p.S303	0.377	NULL	HMMPfam_BAG,HMMSmart_BAG,superfamily_SSF63491	-	no_errors
BTBD11	0	genome.wustl.edu	37	12	108012010	108012010	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	12	108012010	108012010	C	A	SNP	BTBD11	NM_001018072.1	human	genbank	58_37c	+1	validated	silent	c.2307	p.A769	0.892	NULL	HMMSmart_SM00225,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_Histone-fold,superfamily_POZ domain,HMMPfam_BTB	-	no_errors
C16orf53	0	genome.wustl.edu	37	16	29828128	29828128	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	16	29828128	29828128	G	C	SNP	C16orf53	NM_024516.3	human	genbank	58_37c	+1	validated	missense	c.282	p.E94D	1.000	NULL	NULL	-	no_errors
CA14	0	genome.wustl.edu	37	1	150230552	150230552	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	1	150230552	150230552	T	A	SNP	CA14	NM_012113.1	human	genbank	58_37c	+1	reviewed	missense	c.29	p.V10E	1.000	NULL	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase	-	no_errors
CDC27	0	genome.wustl.edu	37	17	45219311	45219311	+	Missense_Mutation	SNP	T	T	C	rs140737545	byFrequency	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	17	45219311	45219311	T	C	SNP	CDC27	NM_001114091.1	human	genbank	58_37c	-1	reviewed	missense	c.1477	p.I493V	1.000	superfamily_TPR-like	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
CPNE1	0	genome.wustl.edu	37	20	34218833	34218833	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	20	34218833	34218833	C	T	SNP	CPNE1	NM_003915.4	human	genbank	58_37c	-1	reviewed	missense	c.1000	p.D334N	1.000	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300	HMMPfam_C2,HMMSmart_C2,HMMSmart_VWA,superfamily_C2_CaLB,HMMPfam_Copine,superfamily_SSF53300	-	no_errors
CTNNAL1	0	genome.wustl.edu	37	9	111775599	111775599	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	9	111775599	111775599	G	C	SNP	CTNNAL1	NM_003798.2	human	genbank	58_37c	-1	provisional	missense	c.124	p.L42V	0.567	HMMPfam_Vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
CUL4B	0	genome.wustl.edu	37	X	119673224	119673224	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	119673224	119673224	T	A	SNP	CUL4B	NM_003588.3	human	genbank	58_37c	-1	reviewed	missense	c.1694	p.K565M	1.000	HMMPfam_Cullin,superfamily_Cullin homology domain	"HMMPfam_Cullin,PatternScan_CULLIN_1,HMMSmart_SM00182,superfamily_Cullin homology domain,superfamily_Cullin repeat,HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
DDX11	0	genome.wustl.edu	37	12	31242869	31242869	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	12	31242869	31242869	G	A	SNP	DDX11	ENST00000404673	human	ensembl	58_37c	+1	known	missense	c.842	p.R281K	0.203	HMMSmart_DEXDc2	HMMSmart_DEXDc2,HMMPfam_DEAD_2,superfamily_SSF52540	-	no_errors
DNAH12	0	genome.wustl.edu	37	3	57394164	57394164	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	3	57394164	57394164	C	T	SNP	DNAH12	NM_178504.4	human	genbank	58_37c	-1	validated	missense	c.6062	p.R2021H	1.000	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DOCK11	0	genome.wustl.edu	37	X	117743298	117743298	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	117743298	117743298	G	C	SNP	DOCK11	NM_144658.3	human	genbank	58_37c	+1	validated	missense	c.2935	p.E979Q	1.000	NULL	HMMPfam_PH,HMMSmart_PH,HMMPfam_Ded_cyto,superfamily_SSF50729	-	no_errors
DOCK3	0	genome.wustl.edu	37	3	51418700	51418726	+	In_Frame_Del	DEL	GTCCACTACAGCCTCTCTGAGTCTGCC	GTCCACTACAGCCTCTCTGAGTCTGCC	-	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	GTCCACTACAGCCTCTCTGAGTCTGCC	GTCCACTACAGCCTCTCTGAGTCTGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	3	51418700	51418726	GTCCACTACAGCCTCTCTGAGTCTGCC	-	DEL	DOCK3	NM_004947.3	human	genbank	58_37c	+1	validated	in_frame_del	c.5803_5829	p.HYSLSESAV1936in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.237:1.000:1.000:1.000:1.000:0.997:0.077:0.990:0.994:0.968	NULL	HMMSmart_SH3,superfamily_SH3,HMMPfam_Ded_cyto,HMMPfam_SH3_2	-	no_errors
EEA1	0	genome.wustl.edu	37	12	93221730	93221732	+	In_Frame_Del	DEL	TTG	TTG	-	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	TTG	TTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	12	93221730	93221732	TTG	-	DEL	EEA1	NM_003566.3	human	genbank	58_37c	-1	validated	in_frame_del	c.1362_1360	p.Q454in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_FYVE,HMMSmart_FYVE,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE_PHD_ZnF,HMMSmart_ZnF_C2H2	-	no_errors
EIF5B	0	genome.wustl.edu	37	2	100007074	100007074	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	2	100007074	100007074	G	C	SNP	EIF5B	NM_015904.3	human	genbank	58_37c	+1	reviewed	missense	c.2654	p.G885A	1.000	HMMPfam_GTP_EFTU_D2,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_GTP_EFTU,HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins,superfamily_Initiation factor IF2/eIF5b domain 3,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000176134	0	genome.wustl.edu	37	9	69653115	69653115	+	Missense_Mutation	SNP	A	A	G	rs672441	byFrequency	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	9	69653115	69653115	A	G	SNP	ENSG00000176134	ENST00000322495	human	ensembl	58_37c	+1	known	missense	c.44	p.Y15C	1.000	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_start_codon:no_stop_codon
ENSG00000248116	0	genome.wustl.edu	37	12	19460407	19460408	+	RNA	INS	-	-	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	12	19460407	19460408	-	A	INS	ENSG00000248116	ENST00000510738	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.923:0.931	-	-	-	no_errors
ENSG00000249202	0	genome.wustl.edu	37	9	130258078	130258081	+	RNA	DEL	CTAT	CTAT	-	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	CTAT	CTAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	9	130258078	130258081	CTAT	-	DEL	ENSG00000249202	ENST00000503383	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	-	no_errors
EPHA1	0	genome.wustl.edu	37	7	143091403	143091403	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	7	143091403	143091403	C	G	SNP	EPHA1	NM_005232.4	human	genbank	58_37c	-1	reviewed	missense	c.2386	p.E796Q	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_EGF_2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
FLRT3	0	genome.wustl.edu	37	20	14307453	14307453	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	20	14307453	14307453	G	A	SNP	FLRT3	NM_013281.2	human	genbank	58_37c	-1	reviewed	missense	c.700	p.R234W	0.948	superfamily_SSF52058	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMPfam_fn3,HMMSmart_FN3,superfamily_SSF52058	-	no_errors
FMNL2	0	genome.wustl.edu	37	2	153435429	153435429	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	2	153435429	153435429	C	G	SNP	FMNL2	NM_052905.3	human	genbank	58_37c	+1	reviewed	missense	c.733	p.P245A	1.000	HMMPfam_Drf_GBD	HMMSmart_FH2,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
FSTL4	0	genome.wustl.edu	37	5	132652191	132652191	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	5	132652191	132652191	G	C	SNP	FSTL4	NM_015082.1	human	genbank	58_37c	-1	validated	missense	c.563	p.A188G	0.000	PatternScan_EF_HAND_1,superfamily_EF-hand	HMMPfam_Kazal_1,HMMSmart_SM00280,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_I-set,HMMPfam_ig,PatternScan_EF_HAND_1,superfamily_Kazal-type serine protease inhibitors,superfamily_EF-hand,superfamily_Immunoglobulin	-	no_errors
GH1	0	genome.wustl.edu	37	17	61994783	61994783	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	17	61994783	61994783	G	A	SNP	GH1	ENST00000441409	human	ensembl	58_37c	-1	known	missense	c.536	p.T179M	0.648	NULL	HMMPfam_Hormone_1,superfamily_4-helical cytokines,PatternScan_SOMATOTROPIN_1	-	no_errors
GPRASP1	0	genome.wustl.edu	37	X	101910990	101910990	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	101910990	101910990	G	A	SNP	GPRASP1	NM_001099410.1	human	genbank	58_37c	+1	reviewed	missense	c.2149	p.E717K	0.035	NULL	HMMPfam_DUF634,superfamily_ARM-type_fold	-	no_errors
HRNR	0	genome.wustl.edu	37	1	152192919	152192919	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	1	152192919	152192919	G	A	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	nonsense	c.1186	p.Q396*	0.000	HMMPfam_SVS_QK	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
KIAA0947	0	genome.wustl.edu	37	5	5464537	5464537	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	5	5464537	5464537	C	T	SNP	KIAA0947	NM_015325.1	human	genbank	58_37c	+1	validated	missense	c.5090	p.S1697F	0.053	NULL	NULL	-	no_errors
KSR2	0	genome.wustl.edu	37	12	117977596	117977596	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	12	117977596	117977596	T	C	SNP	KSR2	NM_173598.4	human	genbank	58_37c	-1	validated	missense	c.1528	p.S510G	1.000	NULL	HMMSmart_SM00219,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,superfamily_Cysteine-rich domain	-	no_errors
LOC100130599	0	genome.wustl.edu	37	21	46122299	46122300	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	21	46122299	46122300	-	T	INS	LOC100130599	XM_002343756.1	human	genbank	58_37c	+1	model	frame_shift_ins	c.555_556	p.P185fs	0.668:0.665	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LOC100288669	0	genome.wustl.edu	37	1	16860989	16860990	+	RNA	DEL	CT	CT	-	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	1	16860989	16860990	CT	-	DEL	LOC100288669	XR_078219.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.005:0.005	-	-	-	pseudogene
LOC440300	0	genome.wustl.edu	37	15	84860046	84860046	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	15	84860046	84860046	G	A	SNP	LOC440300	XR_078504.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.223	-	-	-	pseudogene
MUC4	0	genome.wustl.edu	37	3	195506517	195506517	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	3	195506517	195506517	G	A	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	silent	c.11550	p.S3850	0.024	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NDUFV3	0	genome.wustl.edu	37	21	44323603	44323603	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	21	44323603	44323603	G	A	SNP	NDUFV3	NM_021075.3	human	genbank	58_37c	+1	reviewed	missense	c.481	p.D161N	0.802	NULL	NULL	-	no_errors
NOS1	0	genome.wustl.edu	37	12	117696222	117696222	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	12	117696222	117696222	G	T	SNP	NOS1	NM_000620.2	human	genbank	58_37c	-1	reviewed	missense	c.2511	p.N837K	1.000	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins	HMMPfam_NAD_binding_1,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_FAD_binding_1,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,superfamily_Flavoproteins,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
OPTN	0	genome.wustl.edu	37	10	13174129	13174129	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	10	13174129	13174129	A	G	SNP	OPTN	NM_001008211.1	human	genbank	58_37c	+1	reviewed	silent	c.1464	p.E488	1.000	NULL	NULL	-	no_errors
OTOL1	0	genome.wustl.edu	37	3	161221388	161221388	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	3	161221388	161221388	G	T	SNP	OTOL1	NM_001080440.1	human	genbank	58_37c	+1	provisional	missense	c.1092	p.K364N	0.976	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like	HMMPfam_C1q,HMMSmart_C1Q,HMMPfam_Collagen,superfamily_TNF_like	-	no_errors
PARP6	0	genome.wustl.edu	37	15	72546845	72546845	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	15	72546845	72546845	C	G	SNP	PARP6	NM_020214.2	human	genbank	58_37c	-1	provisional	missense	c.1142	p.R381P	1.000	NULL	HMMPfam_PARP,superfamily_ADP-ribosylation	-	no_errors
PDE4DIP	0	genome.wustl.edu	37	1	145075775	145075775	+	Missense_Mutation	SNP	G	G	A	rs76199660	byFrequency	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	1	145075775	145075775	G	A	SNP	PDE4DIP	NM_022359.4	human	genbank	58_37c	-1	validated	missense	c.88	p.P30S	0.659	NULL	HMMPfam_Microtub_assoc	-	no_errors
PICALM	0	genome.wustl.edu	37	11	85722144	85722144	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	11	85722144	85722144	C	A	SNP	PICALM	NM_007166.2	human	genbank	58_37c	-1	validated	nonsense	c.694	p.E232*	1.000	HMMPfam_ANTH,superfamily_GAT-like domain	superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273,superfamily_GAT-like domain	-	no_errors
PIGT	0	genome.wustl.edu	37	20	44047920	44047920	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	20	44047920	44047920	C	A	SNP	PIGT	ENST00000372689	human	ensembl	58_37c	+1	known	missense	c.47	p.P16H	0.001	HMMPfam_Gpi16	HMMPfam_Gpi16	-	no_errors
PIK3CD	0	genome.wustl.edu	37	1	9781585	9781585	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	1	9781585	9781585	T	C	SNP	PIK3CD	NM_005026.3	human	genbank	58_37c	+1	validated	missense	c.1895	p.F632S	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLCZ1	0	genome.wustl.edu	37	12	18854541	18854552	+	In_Frame_Del	DEL	TCCTCCTCCTCC	TCCTCCTCCTCC	-	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	TCCTCCTCCTCC	TCCTCCTCCTCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	12	18854541	18854552	TCCTCCTCCTCC	-	DEL	PLCZ1	ENST00000447925	human	ensembl	58_37c	-1	known	in_frame_del	c.257_246	p.EEEE82in_frame_del	0.019:0.025:0.029:0.032:0.034:0.034:0.032:0.029:0.024:0.025:0.024:0.021	superfamily_PLC-like_Pdiesterase_TIM-brl	HMMPfam_C2,HMMSmart_C2,HMMPfam_PI-PLC-X,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors
PLP1	0	genome.wustl.edu	37	X	103044308	103044308	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	103044308	103044308	C	A	SNP	PLP1	NM_000533.3	human	genbank	58_37c	+1	reviewed	missense	c.743	p.A248E	1.000	HMMPfam_Myelin_PLP	HMMPfam_Myelin_PLP,HMMSmart_SM00002,PatternScan_MYELIN_PLP_1,PatternScan_MYELIN_PLP_2	-	no_errors
POLR2J3	0	genome.wustl.edu	37	7	102182021	102182021	+	Missense_Mutation	SNP	C	C	A	rs17151760	byFrequency	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	7	102182021	102182021	C	A	SNP	POLR2J3	ENST00000379357	human	ensembl	58_37c	-1	known	missense	c.201	p.Q67H	1.000	NULL	NULL	-	no_errors
PQBP1	0	genome.wustl.edu	37	X	48759291	48759291	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	48759291	48759291	G	C	SNP	PQBP1	ENST00000456306	human	ensembl	58_37c	+1	known	missense	c.230	p.R77P	0.999	NULL	HMMPfam_WW,HMMSmart_SM00456,superfamily_WW domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PRKRA	0	genome.wustl.edu	37	2	179315735	179315736	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	2	179315735	179315736	GC	-	DEL	PRKRA	NM_003690.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.23_22	p.A8fs	0.987:0.993	NULL	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like	-	no_errors
PRTG	0	genome.wustl.edu	37	15	55912380	55912380	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	15	55912380	55912380	G	T	SNP	PRTG	NM_173814.4	human	genbank	58_37c	-1	validated	missense	c.3283	p.P1095T	1.000	NULL	HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
PTPRK	0	genome.wustl.edu	37	6	128404925	128404925	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	6	128404925	128404925	C	A	SNP	PTPRK	NM_001135648.1	human	genbank	58_37c	-1	validated	nonsense	c.1510	p.E504*	1.000	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	HMMPfam_Y_phosphatase,HMMSmart_PTPc,HMMPfam_MAM,HMMSmart_MAM,PatternScan_MAM_1,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF48726,superfamily_SSF52799	-	no_errors
PXK	0	genome.wustl.edu	37	3	58368396	58368396	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	3	58368396	58368396	A	C	SNP	PXK	NM_017771.3	human	genbank	58_37c	+1	provisional	missense	c.357	p.L119F	0.999	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_WH2,superfamily_Protein kinase-like (PK-like)	-	no_errors
RD3	0	genome.wustl.edu	37	1	211652657	211652657	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	1	211652657	211652657	C	T	SNP	RD3	NM_183059.2	human	genbank	58_37c	-1	reviewed	silent	c.309	p.L103	0.207	NULL	NULL	-	no_errors
RNF111	0	genome.wustl.edu	37	15	59323149	59323149	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	15	59323149	59323149	T	A	SNP	RNF111	NM_017610.6	human	genbank	58_37c	+1	reviewed	missense	c.128	p.I43N	1.000	NULL	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
RNF20	0	genome.wustl.edu	37	9	104315014	104315014	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	9	104315014	104315014	A	G	SNP	RNF20	NM_019592.5	human	genbank	58_37c	+1	reviewed	missense	c.1880	p.K627R	1.000	NULL	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
RPGR	0	genome.wustl.edu	37	X	38145826	38145826	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	38145826	38145826	T	C	SNP	RPGR	NM_001034853.1	human	genbank	58_37c	-1	reviewed	missense	c.2426	p.E809G	0.349	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_RCC1/BLIP-II	-	no_errors
SEBOX	0	genome.wustl.edu	37	17	26691976	26691976	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	17	26691976	26691976	G	A	SNP	SEBOX	NM_001080837.2	human	genbank	58_37c	-1	validated	silent	c.111	p.D37	0.008	superfamily_Homeodomain-like	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	no_errors
SFRS2IP	0	genome.wustl.edu	37	12	46320764	46320764	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	12	46320764	46320764	G	A	SNP	SFRS2IP	NM_004719.2	human	genbank	58_37c	-1	validated	missense	c.2720	p.S907F	1.000	NULL	HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_RING/U-box	-	no_errors
SLC25A5	0	genome.wustl.edu	37	X	118603706	118603707	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	118603706	118603707	-	G	INS	SLC25A5	NM_001152.4	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.194_195	p.V67fs	1.000:1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
SMAD1	0	genome.wustl.edu	37	4	146467997	146467997	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	4	146467997	146467997	G	C	SNP	SMAD1	NM_001003688.1	human	genbank	58_37c	+1	reviewed	missense	c.918	p.K306N	1.000	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain	HMMPfam_MH2,HMMSmart_SM00524,HMMPfam_MH1,HMMSmart_SM00523,superfamily_SMAD/FHA domain,superfamily_SMAD MH1 domain	-	no_errors
TAF6	0	genome.wustl.edu	37	7	99711749	99711749	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	7	99711749	99711749	G	A	SNP	TAF6	NM_005641.2	human	genbank	58_37c	-1	reviewed	silent	c.84	p.I28	0.965	HMMPfam_TAF,HMMSmart_SM00803,superfamily_Histone-fold	HMMPfam_TAF,HMMSmart_SM00803,superfamily_Histone-fold,HMMPfam_DUF1546	-	no_errors
TAT	0	genome.wustl.edu	37	16	71610261	71610261	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	16	71610261	71610261	C	T	SNP	TAT	NM_000353.2	human	genbank	58_37c	-1	reviewed	missense	c.58	p.V20M	0.373	HMMPfam_TAT_ubiq	PatternScan_AA_TRANSFER_CLASS_1,HMMPfam_Aminotran_1_2,HMMPfam_TAT_ubiq,superfamily_PLP-dependent transferases	-	no_errors
TBC1D13	0	genome.wustl.edu	37	9	131568232	131568232	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	9	131568232	131568232	G	C	SNP	TBC1D13	NM_018201.3	human	genbank	58_37c	+1	validated	missense	c.1013	p.W338S	1.000	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC	-	no_errors
TBC1D2	0	genome.wustl.edu	37	9	101006381	101006381	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	9	101006381	101006381	A	T	SNP	TBC1D2	NM_018421.3	human	genbank	58_37c	-1	validated	missense	c.542	p.L181Q	1.000	NULL	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	G	rs121912666	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	17	7578190	7578190	T	G	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.659	p.Y220S	0.998	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TP53	0	genome.wustl.edu	37	17	7579414	7579414	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	17	7579414	7579414	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.273	p.W91*	1.000	NULL	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TPM2	0	genome.wustl.edu	37	9	35689719	35689719	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	9	35689719	35689719	A	G	SNP	TPM2	NM_003289.3	human	genbank	58_37c	-1	reviewed	silent	c.96	p.A32	0.910	NULL	HMMPfam_Tropomyosin,PatternScan_TROPOMYOSIN	-	no_errors
TRAF6	0	genome.wustl.edu	37	11	36518707	36518707	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	11	36518707	36518707	T	C	SNP	TRAF6	NM_004620.2	human	genbank	58_37c	-1	reviewed	missense	c.557	p.Q186R	1.000	HMMPfam_zf-TRAF,superfamily_Traf_like	HMMPfam_zf-TRAF,HMMSmart_RING,HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
TRPV2	0	genome.wustl.edu	37	17	16326827	16326827	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	17	16326827	16326827	G	A	SNP	TRPV2	NM_016113.3	human	genbank	58_37c	+1	reviewed	missense	c.670	p.V224M	0.978	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_Ion_trans	-	no_errors
WDR87	0	genome.wustl.edu	37	19	38380815	38380815	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	19	38380815	38380815	C	T	SNP	WDR87	NM_031951.3	human	genbank	58_37c	-1	provisional	missense	c.3379	p.A1127T	0.037	superfamily_WD40 repeat-like,superfamily_ARM repeat	HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_ARM repeat,PatternScan_C_TYPE_LECTIN_1,HMMPfam_WD40	-	no_errors
WDSUB1	0	genome.wustl.edu	37	2	160139361	160139361	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	2	160139361	160139361	T	C	SNP	WDSUB1	NM_001128212.1	human	genbank	58_37c	-1	validated	missense	c.220	p.T74A	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	HMMSmart_SM00454,HMMSmart_SM00320,HMMPfam_U-box,HMMSmart_SM00504,superfamily_SAM/Pointed domain,superfamily_WD40 repeat-like,HMMPfam_SAM_2,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_RING/U-box	-	no_errors
WNK3	0	genome.wustl.edu	37	X	54259337	54259337	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	X	54259337	54259337	G	C	SNP	WNK3	NM_020922.4	human	genbank	58_37c	-1	reviewed	missense	c.4745	p.P1582R	0.999	NULL	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase	-	no_errors
XIRP2	0	genome.wustl.edu	37	2	168101752	168101752	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	2	168101752	168101752	T	A	SNP	XIRP2	NM_152381.4	human	genbank	58_37c	+1	validated	missense	c.3850	p.L1284I	0.998	HMMPfam_Xin	HMMPfam_Xin	-	no_errors
ZFAND1	0	genome.wustl.edu	37	8	82626198	82626198	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A243-01A-21D-A167-09	TCGA-E9-A243-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6bb16c6-cb0f-44c6-93e7-6c55d0958f82	a7e3e9d1-e371-4d3d-92cd-7985f276f70b	8	82626198	82626198	C	T	SNP	ZFAND1	NM_024699.2	human	genbank	58_37c	-1	validated	silent	c.435	p.L145	0.993	NULL	HMMPfam_zf-AN1,HMMSmart_SM00154	-	no_errors
