Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
B3GNT9	0	genome.wustl.edu	37	16	67184131	67184131	+	Silent	SNP	G	C	C	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	16	67184131	67184131	G	C	SNP	B3GNT9	NM_033309.2	human	genbank	58_37c	-1	validated	silent	c.258	p.R86	0.259	NULL	HMMPfam_Galactosyl_T	-	no_errors
DLG3	0	genome.wustl.edu	37	X	69722031	69722031	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	X	69722031	69722031	C	G	SNP	DLG3	NM_021120.3	human	genbank	58_37c	+1	reviewed	nonsense	c.2366	p.S789*	1.000	HMMSmart_SM00072,HMMPfam_Gua_kin_assoc_C,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,HMMPfam_PDZ_assoc,HMMPfam_Gua_kin_assoc_C,HMMPfam_MAGUK_N_PEST,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000183704	0	genome.wustl.edu	37	Y	13500670	13500670	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	Y	13500670	13500670	C	A	SNP	ENSG00000183704	ENST00000331172	human	ensembl	58_37c	-1	known	missense	c.607	p.A203S	0.999	NULL	NULL	-	no_errors
ENSG00000184206	0	genome.wustl.edu	37	15	84909434	84909434	+	Missense_Mutation	SNP	G	G	A	rs2175418	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	15	84909434	84909434	G	A	SNP	ENSG00000184206	ENST00000510439	human	ensembl	58_37c	+1	known	missense	c.1328	p.R443Q	0.001	NULL	NULL	-	no_errors
ENSG00000204987	0	genome.wustl.edu	37	7	141871953	141871953	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	7	141871953	141871953	G	T	SNP	ENSG00000204987	ENST00000477922	human	ensembl	58_37c	+1	known	missense	c.3311	p.G1104V	0.038	NULL	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,HMMSmart_SM00018,superfamily_Trefoil,PatternScan_N6_MTASE,superfamily_(Trans)glycosidases	-	no_stop_codon
ENSG00000230135	0	genome.wustl.edu	37	15	83014132	83014132	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	15	83014132	83014132	C	G	SNP	ENSG00000230135	ENST00000449790	human	ensembl	58_37c	-1	known	missense	c.451	p.E151Q	0.991	NULL	NULL	-	no_errors
ENSG00000249355	0	genome.wustl.edu	37	22	41995222	41995224	+	RNA	DEL	AAG	AAG	-	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	22	41995222	41995224	AAG	-	DEL	ENSG00000249355	ENST00000510703	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors
FAM186A	0	genome.wustl.edu	37	12	50747334	50747335	+	Missense_Mutation	DNP	GC	GC	TT	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	12	50747334	50747335	GC	TT	DNP	FAM186A	NM_001145475.1	human	genbank	58_37c	-1	provisional	missense	c.3281_3280	p.A1094N	0.000:0.000	NULL	NULL	-	no_errors
FAM22G	0	genome.wustl.edu	37	9	99699543	99699543	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	9	99699543	99699543	C	T	SNP	FAM22G	NM_001045477.2	human	genbank	58_37c	+1	validated	missense	c.1180	p.H394Y	0.000	NULL	NULL	-	no_errors
GNPTAB	0	genome.wustl.edu	37	12	102151069	102151069	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	12	102151069	102151069	C	T	SNP	GNPTAB	NM_024312.4	human	genbank	58_37c	-1	reviewed	missense	c.3355	p.E1119K	1.000	NULL	HMMPfam_Notch,HMMSmart_SM00004,superfamily_Notch domain,HMMPfam_DMAP_binding,PatternScan_EF_HAND_1	-	no_errors
GPR158	0	genome.wustl.edu	37	10	25885597	25885597	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	10	25885597	25885597	G	A	SNP	GPR158	NM_020752.2	human	genbank	58_37c	+1	validated	missense	c.2024	p.R675Q	1.000	NULL	HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168376967	168376968	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	6	168376967	168376968	-	G	INS	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	frame_shift_ins	c.366_365	p.Q122fs	0.009:0.005	NULL	NULL	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168376968	168376969	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	6	168376968	168376969	-	G	INS	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	frame_shift_ins	c.365_364	p.Q122fs	0.005:0.007	NULL	NULL	-	no_errors
KIAA0406	0	genome.wustl.edu	37	20	36641777	36641777	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	20	36641777	36641777	G	A	SNP	KIAA0406	NM_014657.1	human	genbank	58_37c	-1	predicted	silent	c.442	p.L148	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
KPNA3	0	genome.wustl.edu	37	13	50296658	50296658	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	13	50296658	50296658	G	A	SNP	KPNA3	NM_002267.3	human	genbank	58_37c	-1	reviewed	nonsense	c.511	p.Q171*	1.000	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat	HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_IBB,superfamily_ARM repeat	-	no_errors
KRTAP4-7	0	genome.wustl.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C	rs189343211	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	17	39240627	39240627	T	C	SNP	KRTAP4-7	ENST00000377731	human	ensembl	58_37c	+1	known	missense	c.169	p.S57P	0.032	PatternScan_TNFR_NGFR_1,HMMPfam_Keratin_B2	PatternScan_TNFR_NGFR_1,HMMPfam_Keratin_B2	-	no_errors
LOC100129942	0	genome.wustl.edu	37	15	89533536	89533537	+	RNA	INS	-	-	GGCGGG	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	15	89533536	89533537	-	GGCGGG	INS	LOC100129942	XR_038237.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.000:0.001	-	-	-	pseudogene
LOC100132153	0	genome.wustl.edu	37	6	3177484	3177485	+	RNA	INS	-	-	C	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	6	3177484	3177485	-	C	INS	LOC100132153	XR_036965.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000:0.131	-	-	-	pseudogene
LOC100288406	0	genome.wustl.edu	37	12	92437	92437	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	12	92437	92437	C	A	SNP	LOC100288406	XM_002343141.1	human	genbank	58_37c	+1	model	missense	c.461	p.P154H	0.000	NULL	NULL	-	pseudogene
LOC148003	0	genome.wustl.edu	37	19	40148074	40148074	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	19	40148074	40148074	T	C	SNP	LOC148003	XM_001721341.1	human	genbank	58_37c	+1	model	splice_site	c.105+2	e1+2	0.064	-	-	-	no_errors
MIR142	0	genome.wustl.edu	37	17	56408664	56408664	+	RNA	SNP	G	G	T	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	17	56408664	56408664	G	T	SNP	MIR142	ENST00000384835	human	ensembl	58_37c	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
MPP4	0	genome.wustl.edu	37	2	202529007	202529008	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	2	202529007	202529008	AC	-	DEL	MPP4	ENST00000409818	human	ensembl	58_37c	-1	known	frame_shift_del	c.1290_1289	p.C430fs	0.001:0.000	NULL	HMMSmart_SH3,superfamily_SH3,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_L27,HMMPfam_SH3_2,HMMPfam_L27	-	no_errors
MYO7B	0	genome.wustl.edu	37	2	128394164	128394164	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	2	128394164	128394164	C	G	SNP	MYO7B	NM_001080527.1	human	genbank	58_37c	+1	provisional	missense	c.6090	p.I2030M	1.000	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_MyTH4,HMMSmart_SM00139,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_SH3_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PAPPA	0	genome.wustl.edu	37	9	118997720	118997720	+	Missense_Mutation	SNP	G	G	A	rs144065173	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	9	118997720	118997720	G	A	SNP	PAPPA	NM_002581.3	human	genbank	58_37c	+1	reviewed	missense	c.2536	p.V846M	0.306	superfamily_SSF55486	HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_Notch,HMMSmart_NL,PatternScan_ZINC_PROTEASE,HMMSmart_LamGL,HMMPfam_Peptidase_M43,superfamily_ConA_like_lec_gl,superfamily_Complement_control_module,superfamily_SSF55486	-	no_errors
PGAM2	0	genome.wustl.edu	37	7	44104972	44104972	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	7	44104972	44104972	C	G	SNP	PGAM2	NM_000290.3	human	genbank	58_37c	-1	reviewed	missense	c.157	p.D53H	1.000	HMMPfam_PGAM,superfamily_SSF53254	PatternScan_PG_MUTASE,HMMPfam_PGAM,superfamily_SSF53254	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RAD51L1	0	genome.wustl.edu	37	14	68292285	68292285	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	14	68292285	68292285	G	T	SNP	RAD51L1	NM_133509.2	human	genbank	58_37c	+1	reviewed	missense	c.189	p.K63N	0.966	HMMPfam_Rad51	HMMSmart_SM00382,HMMPfam_Rad51,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RRN3P2	0	genome.wustl.edu	37	16	29098705	29098705	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	16	29098705	29098705	G	A	SNP	RRN3P2	ENST00000219758	human	ensembl	58_37c	+1	known	silent	c.645	p.S215	0.998	NULL	HMMPfam_RRN3	-	no_errors
SERPINI2	0	genome.wustl.edu	37	3	167183403	167183403	+	Silent	SNP	C	C	G	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	3	167183403	167183403	C	G	SNP	SERPINI2	NM_006217.3	human	genbank	58_37c	-1	reviewed	silent	c.537	p.L179	1.000	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
SLIT2	0	genome.wustl.edu	37	4	20555534	20555534	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	4	20555534	20555534	G	C	SNP	SLIT2	NM_004787.1	human	genbank	58_37c	+1	provisional	missense	c.2668	p.G890R	1.000	HMMPfam_LRRCT,HMMSmart_SM00082	PatternScan_ASX_HYDROXYL,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00282,HMMSmart_SM00179,HMMSmart_SM00369,HMMSmart_SM00274,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMSmart_SM00365,superfamily_L domain-like,superfamily_EGF/Laminin	-	no_errors
TBX20	0	genome.wustl.edu	37	7	35244129	35244129	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	7	35244129	35244129	C	T	SNP	TBX20	NM_001077653.2	human	genbank	58_37c	-1	reviewed	missense	c.956	p.G319E	1.000	NULL	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
TOB1	0	genome.wustl.edu	37	17	48940939	48940939	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	17	48940939	48940939	G	A	SNP	TOB1	NM_005749.2	human	genbank	58_37c	-1	reviewed	missense	c.440	p.S147L	1.000	NULL	HMMPfam_BTG,HMMSmart_SM00099,PatternScan_BTG_1,PatternScan_BTG_2	-	no_errors
ZC3H3	0	genome.wustl.edu	37	8	144621351	144621351	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	8	144621351	144621351	G	A	SNP	ZC3H3	NM_015117.2	human	genbank	58_37c	-1	validated	silent	c.186	p.Y62	0.807	NULL	HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger	-	no_errors
ZNF701	0	genome.wustl.edu	37	19	53079273	53079273	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	19	53079273	53079273	G	A	SNP	ZNF701	NM_018260.2	human	genbank	58_37c	+1	validated	silent	c.141	p.L47	0.988	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZZEF1	0	genome.wustl.edu	37	17	3975955	3975955	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1IX-01A-12D-A142-09	TCGA-EW-A1IX-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01ea194f-dc06-4e15-9b9e-1c73668040e0	034e0751-b08d-4f11-8c52-a7e4f1267f47	17	3975955	3975955	C	G	SNP	ZZEF1	NM_015113.3	human	genbank	58_37c	-1	validated	missense	c.3781	p.E1261Q	1.000	NULL	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Spermadhesin CUB domain,HMMSmart_SM00054,HMMPfam_APC10,superfamily_Galactose-binding domain-like,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
