Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
CACNA1A	0	genome.wustl.edu	37	19	13427968	13427968	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	19	13427968	13427968	T	C	SNP	CACNA1A	NM_001127222.1	human	genbank	58_37c	-1	reviewed	missense	c.1513	p.I505V	0.996	superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CASP8	0	genome.wustl.edu	37	2	202131411	202131411	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	2	202131411	202131411	C	T	SNP	CASP8	NM_001080125.1	human	genbank	58_37c	+1	reviewed	nonsense	c.379	p.R127*	0.742	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain,HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS,superfamily_Caspase-like	-	no_errors
CDYL2	0	genome.wustl.edu	37	16	80646646	80646646	+	Silent	SNP	C	C	A	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	16	80646646	80646646	C	A	SNP	CDYL2	NM_152342.2	human	genbank	58_37c	-1	validated	silent	c.1095	p.L365	1.000	HMMPfam_ECH,superfamily_SSF52096	HMMPfam_Chromo,HMMSmart_CHROMO,PatternScan_CHROMO_1,HMMPfam_ECH,superfamily_Chromodomain-like,superfamily_SSF52096	-	no_errors
CYFIP1	0	genome.wustl.edu	37	15	22928474	22928474	+	Silent	SNP	T	T	A	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	15	22928474	22928474	T	A	SNP	CYFIP1	NM_014608.2	human	genbank	58_37c	+1	validated	silent	c.351	p.P117	0.920	HMMPfam_FragX_IP	HMMPfam_FragX_IP	-	no_errors
CYP4F2	0	genome.wustl.edu	37	19	16003198	16003198	+	Missense_Mutation	SNP	C	C	T	rs140630977	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	19	16003198	16003198	C	T	SNP	CYP4F2	NM_001082.3	human	genbank	58_37c	-1	reviewed	missense	c.446	p.R149Q	1.000	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
CYTIP	0	genome.wustl.edu	37	2	158272428	158272428	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	2	158272428	158272428	C	T	SNP	CYTIP	NM_004288.4	human	genbank	58_37c	-1	reviewed	missense	c.841	p.D281N	0.997	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	-	no_errors
DNAH8	0	genome.wustl.edu	37	6	38867558	38867558	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	6	38867558	38867558	C	T	SNP	DNAH8	NM_001371.2	human	genbank	58_37c	+1	validated	nonsense	c.8419	p.R2807*	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DST	0	genome.wustl.edu	37	6	56458463	56458464	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	6	56458463	56458464	-	A	INS	DST	NM_015548.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.4855_4854	p.K1618fs	0.998:0.649	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_Spectrin,HMMSmart_SM00054,HMMPfam_GAS2,HMMSmart_SM00243,HMMSmart_SM00150,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2300	2300	+	RNA	SNP	G	G	A	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	MT	2300	2300	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000221080	0	genome.wustl.edu	37	1	227695183	227695184	+	RNA	INS	-	-	GGA	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	1	227695183	227695184	-	GGA	INS	ENSG00000221080	ENST00000408153	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	1.000:0.996	-	-	-	no_errors
ENSG00000230974	0	genome.wustl.edu	37	4	49152556	49152556	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	4	49152556	49152556	C	T	SNP	ENSG00000230974	ENST00000447635	human	ensembl	58_37c	-1	known	nonsense	c.23	p.W8*	0.000	NULL	NULL	-	no_stop_codon
ENSG00000244346	0	genome.wustl.edu	37	3	182673378	182673379	+	Splice_Site	INS	-	-	T	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	3	182673378	182673379	-	T	INS	ENSG00000244346	ENST00000460975	human	ensembl	58_37c	-1	known	splice_site_ins	c.NULL	NULL	0.138:0.131	-	-	-	no_coding_region:pseudogene
FAM157C	0	genome.wustl.edu	37	16	90167953	90167953	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	16	90167953	90167953	G	T	SNP	FAM157C	XM_001714162.2	human	genbank	58_37c	+1	model	splice_site	c.155+1	e1+1	0.101	-	-	-	no_errors
FBLN5	0	genome.wustl.edu	37	14	92343923	92343923	+	Missense_Mutation	SNP	T	T	C	rs140452924	byFrequency	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	14	92343923	92343923	T	C	SNP	FBLN5	NM_006329.3	human	genbank	58_37c	-1	reviewed	missense	c.1093	p.I365V	1.000	NULL	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,superfamily_Serine proterase inhibitors,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FBXL2	0	genome.wustl.edu	37	3	33406169	33406169	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	3	33406169	33406169	T	G	SNP	FBXL2	NM_012157.3	human	genbank	58_37c	+1	reviewed	missense	c.248	p.L83R	1.000	superfamily_SSF52047	HMMPfam_LRR_1,HMMPfam_F-box,HMMSmart_FBOX,HMMSmart_LRR_CC,superfamily_SSF52047	-	no_errors
FKSG83	0	genome.wustl.edu	37	6	27293475	27293475	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	6	27293475	27293475	C	T	SNP	FKSG83	NM_032030.2	human	genbank	58_37c	+1	validated	silent	c.414	p.I138	0.002	NULL	HMMPfam_V1R	-	no_errors
GATA3	0	genome.wustl.edu	37	10	8115725	8115728	+	Frame_Shift_Del	DEL	GAAG	GAAG	-	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	GAAG	GAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	10	8115725	8115728	GAAG	-	DEL	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1074_1077	p.E360fs	1.000:1.000:1.000:1.000	HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
LCT	0	genome.wustl.edu	37	2	136570175	136570175	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	2	136570175	136570175	T	G	SNP	LCT	NM_002299.2	human	genbank	58_37c	-1	reviewed	missense	c.2059	p.T687P	1.000	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_1,PatternScan_GLYCOSYL_HYDROL_F1_2	-	no_errors
LOC100288142	0	genome.wustl.edu	37	1	148343792	148343792	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	1	148343792	148343792	C	A	SNP	LOC100288142	XM_002344444.1	human	genbank	58_37c	-1	model	missense	c.295	p.V99F	0.000	NULL	HMMPfam_DUF1220	-	no_errors
NBPF10	0	genome.wustl.edu	37	1	145299838	145299838	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	1	145299838	145299838	G	A	SNP	NBPF10	NM_001039703.4	human	genbank	58_37c	+1	provisional	missense	c.887	p.R296H	0.000	NULL	HMMPfam_DUF1220	-	no_errors
NPHP4	0	genome.wustl.edu	37	1	5967185	5967185	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	1	5967185	5967185	G	A	SNP	NPHP4	NM_015102.2	human	genbank	58_37c	-1	reviewed	missense	c.1601	p.P534L	0.000	NULL	NULL	-	no_errors
PKD2L2	0	genome.wustl.edu	37	5	137226171	137226171	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	5	137226171	137226171	G	A	SNP	PKD2L2	NM_014386.2	human	genbank	58_37c	+1	validated	silent	c.33	p.G11	0.132	NULL	HMMPfam_PKD_channel	-	no_errors
SRPR	0	genome.wustl.edu	37	11	126136761	126136761	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	11	126136761	126136761	G	A	SNP	SRPR	NM_003139.3	human	genbank	58_37c	-1	reviewed	missense	c.583	p.P195S	0.909	HMMPfam_SRP-alpha_N	HMMPfam_SRP54,PatternScan_SRP54,HMMSmart_AAA,HMMPfam_SRP-alpha_N,superfamily_SRP54,superfamily_SSF52540	-	no_errors
TBC1D19	0	genome.wustl.edu	37	4	26622298	26622298	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	4	26622298	26622298	G	A	SNP	TBC1D19	NM_018317.2	human	genbank	58_37c	+1	validated	missense	c.282	p.M94I	1.000	NULL	HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
VSTM2B	0	genome.wustl.edu	37	19	30054758	30054758	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	19	30054758	30054758	G	A	SNP	VSTM2B	ENST00000335523	human	ensembl	58_37c	+1	known	missense	c.775	p.G259S	0.948	NULL	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
