Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA10	0	genome.wustl.edu	37	17	67190077	67190077	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	17	67190077	67190077	T	C	SNP	ABCA10	NM_080282.3	human	genbank	58_37c	-1	reviewed	missense	c.1399	p.I467V	0.048	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ANKRD30A	0	genome.wustl.edu	37	10	37419187	37419187	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	37419187	37419187	G	A	SNP	ANKRD30A	NM_052997.2	human	genbank	58_37c	+1	validated	missense	c.223	p.D75N	0.300	PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
AOC3	0	genome.wustl.edu	37	17	41004614	41004614	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	17	41004614	41004614	G	A	SNP	AOC3	NM_003734.2	human	genbank	58_37c	+1	reviewed	silent	c.1254	p.E418	0.773	HMMPfam_Cu_amine_oxid,superfamily_CuNH_oxidase	PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2,HMMPfam_Cu_amine_oxid,superfamily_CuNH_oxidase,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_Cu_amine_oxidase_N-reg	-	no_errors
C19orf39	0	genome.wustl.edu	37	19	11486428	11486428	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	11486428	11486428	G	C	SNP	C19orf39	NM_175871.3	human	genbank	58_37c	+1	validated	missense	c.426	p.Q142H	0.018	NULL	superfamily_SSF52540	-	no_errors
CACNA1B	0	genome.wustl.edu	37	9	140943768	140943768	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	9	140943768	140943768	G	C	SNP	CACNA1B	NM_000718.2	human	genbank	58_37c	+1	validated	splice_site	c.3710+1	e24+1	1.000	-	-	-	no_errors
CCDC132	0	genome.wustl.edu	37	7	92926136	92926136	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	7	92926136	92926136	A	G	SNP	CCDC132	NM_017667.2	human	genbank	58_37c	+1	validated	missense	c.1250	p.D417G	1.000	NULL	HMMPfam_DUF2451,HMMPfam_DUF2450	-	no_errors
CCR1	0	genome.wustl.edu	37	3	46245442	46245442	+	Silent	SNP	G	G	T	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	3	46245442	46245442	G	T	SNP	CCR1	NM_001295.2	human	genbank	58_37c	-1	reviewed	silent	c.363	p.I121	1.000	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
CD3EAP	0	genome.wustl.edu	37	19	45912490	45912492	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	45912490	45912492	AAG	-	DEL	CD3EAP	NM_012099.1	human	genbank	58_37c	+1	validated	in_frame_del	c.1264_1266	p.K425in_frame_del	0.656:0.828:0.908	NULL	HMMPfam_RNA_polI_A34	-	no_errors
CDH15	0	genome.wustl.edu	37	16	89256775	89256775	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	89256775	89256775	A	C	SNP	CDH15	NM_004933.2	human	genbank	58_37c	+1	reviewed	missense	c.1103	p.D368A	0.994	HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CDH23	0	genome.wustl.edu	37	10	73494028	73494028	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	73494028	73494028	G	A	SNP	CDH23	NM_022124.5	human	genbank	58_37c	+1	reviewed	missense	c.4136	p.R1379H	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
CES7	0	genome.wustl.edu	37	16	55909072	55909072	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	55909072	55909072	G	A	SNP	CES7	NM_001143685.1	human	genbank	58_37c	-1	validated	missense	c.62	p.A21V	0.451	HMMPfam_COesterase	HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1,superfamily_alpha/beta-Hydrolases	-	no_errors
CLCA1	0	genome.wustl.edu	37	1	86959277	86959277	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	86959277	86959277	G	T	SNP	CLCA1	NM_001285.3	human	genbank	58_37c	+1	reviewed	missense	c.1675	p.A559S	1.000	HMMPfam_DUF1973	PatternScan_ATPASE_GAMMA,HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_CLCA_N,HMMPfam_DUF1973,superfamily_vWA-like	-	no_errors
CSMD3	0	genome.wustl.edu	37	8	113933928	113933928	+	Missense_Mutation	SNP	C	C	T	rs140758499	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	8	113933928	113933928	C	T	SNP	CSMD3	NM_198123.1	human	genbank	58_37c	-1	validated	missense	c.1561	p.A521T	0.467	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
DENND5B	0	genome.wustl.edu	37	12	31576559	31576559	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	12	31576559	31576559	C	G	SNP	DENND5B	NM_144973.3	human	genbank	58_37c	-1	validated	missense	c.2442	p.E814D	1.000	HMMPfam_RUN	HMMPfam_PLAT,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_RUN,HMMSmart_SM00593,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)	-	no_errors
DGKD	0	genome.wustl.edu	37	2	234378033	234378033	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	2	234378033	234378033	A	T	SNP	DGKD	NM_152879.2	human	genbank	58_37c	+1	reviewed	missense	c.3572	p.K1191M	1.000	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	HMMPfam_DAGK_acc,HMMSmart_SM00045,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMSmart_SM00454,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	no_errors
DMXL2	0	genome.wustl.edu	37	15	51773279	51773279	+	Silent	SNP	T	T	C	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	15	51773279	51773279	T	C	SNP	DMXL2	NM_015263.3	human	genbank	58_37c	-1	validated	silent	c.6024	p.K2008	0.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
DYNC2H1	0	genome.wustl.edu	37	11	103114423	103114423	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	11	103114423	103114423	G	A	SNP	DYNC2H1	NM_001080463.1	human	genbank	58_37c	+1	reviewed	missense	c.9842	p.S3281N	1.000	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
FAM22B	0	genome.wustl.edu	37	10	81471479	81471479	+	Silent	SNP	C	C	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	81471479	81471479	C	A	SNP	FAM22B	ENST00000429828	human	ensembl	58_37c	+1	known	silent	c.1875	p.P625	0.022	NULL	NULL	-	no_errors
FAM75A1	0	genome.wustl.edu	37	9	39361134	39361134	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	9	39361134	39361134	G	T	SNP	FAM75A1	NM_001085452.1	human	genbank	58_37c	+1	predicted	missense	c.3372	p.R1124S	0.000	NULL	NULL	-	no_errors
FYB	0	genome.wustl.edu	37	5	39127855	39127855	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	5	39127855	39127855	T	A	SNP	FYB	NM_001465.3	human	genbank	58_37c	-1	validated	missense	c.1895	p.D632V	0.935	NULL	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2,PatternScan_XYLOSE_ISOMERASE_1	-	no_errors
GALNT2	0	genome.wustl.edu	37	1	230398319	230398319	+	Silent	SNP	A	A	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	230398319	230398319	A	G	SNP	GALNT2	NM_004481.3	human	genbank	58_37c	+1	reviewed	silent	c.1137	p.R379	0.893	superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GBF1	0	genome.wustl.edu	37	10	104130498	104130498	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	104130498	104130498	G	C	SNP	GBF1	NM_004193.1	human	genbank	58_37c	+1	provisional	missense	c.3538	p.D1180H	1.000	NULL	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7	-	no_errors
HCFC1	0	genome.wustl.edu	37	X	153224852	153224852	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	X	153224852	153224852	G	A	SNP	HCFC1	NM_005334.2	human	genbank	58_37c	-1	reviewed	missense	c.1535	p.A512V	0.997	HMMSmart_SM00060	HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Kelch_1,superfamily_Fibronectin type III,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2	-	no_errors
IL1F7	0	genome.wustl.edu	37	2	113676172	113676172	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	2	113676172	113676172	A	G	SNP	IL1F7	NM_014439.3	human	genbank	58_37c	+1	reviewed	missense	c.443	p.E148G	0.004	HMMSmart_SM00125,superfamily_Cytokine	HMMPfam_IL1,HMMSmart_SM00125,superfamily_Cytokine	-	no_errors
INPP5A	0	genome.wustl.edu	37	10	134463965	134463965	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	134463965	134463965	C	T	SNP	INPP5A	NM_005539.3	human	genbank	58_37c	+1	reviewed	nonsense	c.262	p.R88*	0.998	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos	-	no_errors
JAK3	0	genome.wustl.edu	37	19	17948829	17948829	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	17948829	17948829	C	T	SNP	JAK3	NM_000215.3	human	genbank	58_37c	-1	reviewed	missense	c.1613	p.G538D	0.998	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_SH2 domain	PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00252,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMSmart_SM00295,superfamily_SH2 domain	-	no_errors
KIAA1804	0	genome.wustl.edu	37	1	233518092	233518092	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	233518092	233518092	C	T	SNP	KIAA1804	NM_032435.2	human	genbank	58_37c	+1	validated	missense	c.2746	p.P916S	0.851	NULL	HMMSmart_SM00219,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
KRT9	0	genome.wustl.edu	37	17	39724412	39724412	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	17	39724412	39724412	A	G	SNP	KRT9	NM_000226.3	human	genbank	58_37c	-1	reviewed	splice_site	c.1394+2	e6+2	0.939	-	-	-	no_errors
KRTAP4-9	0	genome.wustl.edu	37	17	39262243	39262243	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	17	39262243	39262243	C	A	SNP	KRTAP4-9	XM_002343553.1	human	genbank	58_37c	+1	model	missense	c.584	p.A195D	0.394	NULL	NULL	-	no_errors
KRTAP5-10	0	genome.wustl.edu	37	11	71276999	71276999	+	Silent	SNP	T	T	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	11	71276999	71276999	T	G	SNP	KRTAP5-10	NM_001012710.1	human	genbank	58_37c	+1	validated	silent	c.366	p.G122	0.051	NULL	PatternScan_VWFC_1,PatternScan_MOLYBDOPTERIN_PROK_1	-	no_errors
LIX1	0	genome.wustl.edu	37	5	96430625	96430625	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	5	96430625	96430625	G	C	SNP	LIX1	NM_153234.4	human	genbank	58_37c	-1	validated	missense	c.676	p.R226G	0.989	NULL	PatternScan_IF	-	no_errors
LOC100128302	0	genome.wustl.edu	37	10	93878906	93878906	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	93878906	93878906	G	T	SNP	LOC100128302	XM_002343006.1	human	genbank	58_37c	+1	model	missense	c.331	p.A111S	0.442	NULL	HMMPfam_Sdh_cyt,superfamily_Fumarate reductase respiratory complex transmembrane subunits	-	no_errors
LOC100133981	0	genome.wustl.edu	37	10	702176	702177	+	Frame_Shift_Ins	INS	-	-	TTCTA	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	702176	702177	-	TTCTA	INS	LOC100133981	XM_001717614.2	human	genbank	58_37c	-1	model	frame_shift_ins	c.197_196	p.R66fs	0.001:0.013	NULL	NULL	-	no_start_codon:pseudogene
LOC26102	0	genome.wustl.edu	37	9	139220031	139220031	+	RNA	SNP	C	A	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	9	139220031	139220031	C	A	SNP	LOC26102	NR_026964.1	human	genbank	58_37c	-1	predicted	rna	NULL	NULL	0.016	-	-	-	no_errors
LOC440300	0	genome.wustl.edu	37	15	84860071	84860071	+	RNA	SNP	C	C	T	rs28615558	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	15	84860071	84860071	C	T	SNP	LOC440300	XR_078504.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.975	-	-	-	pseudogene
LOC642236	0	genome.wustl.edu	37	9	68429152	68429152	+	RNA	SNP	T	T	C	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	9	68429152	68429152	T	C	SNP	LOC642236	XR_041085.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LOC729501	0	genome.wustl.edu	37	13	19044087	19044087	+	Missense_Mutation	SNP	C	T	T	rs9579957	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	13	19044087	19044087	C	T	SNP	LOC729501	XM_002343229.1	human	genbank	58_37c	-1	model	missense	c.151	p.E51K	0.573	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	pseudogene
LSM14A	0	genome.wustl.edu	37	19	34712628	34712628	+	Silent	SNP	G	G	A	rs147228264	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	34712628	34712628	G	A	SNP	LSM14A	NM_001114093.1	human	genbank	58_37c	+1	validated	silent	c.1353	p.A451	1.000	NULL	HMMPfam_DFDF,HMMPfam_FFD_TFG	-	no_errors
MAML2	0	genome.wustl.edu	37	11	95825386	95825386	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	11	95825386	95825386	C	T	SNP	MAML2	NM_032427.1	human	genbank	58_37c	-1	validated	silent	c.1809	p.Q603	0.000	NULL	HMMPfam_MamL-1	-	no_errors
MPP7	0	genome.wustl.edu	37	10	28378743	28378743	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	28378743	28378743	C	G	SNP	MPP7	NM_173496.3	human	genbank	58_37c	-1	validated	missense	c.980	p.S327T	1.000	superfamily_SH3	HMMSmart_SH3,superfamily_SH3,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_L27,HMMPfam_Guanylate_kin,HMMSmart_GuKc,HMMPfam_SH3_2,HMMPfam_L27,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52540	-	no_errors
MSL2	0	genome.wustl.edu	37	3	135870742	135870742	+	Silent	SNP	T	T	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	3	135870742	135870742	T	A	SNP	MSL2	NM_018133.3	human	genbank	58_37c	-1	validated	silent	c.981	p.S327	1.000	NULL	PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
NMT2	0	genome.wustl.edu	37	10	15161504	15161504	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	15161504	15161504	C	G	SNP	NMT2	NM_004808.2	human	genbank	58_37c	-1	reviewed	missense	c.1008	p.K336N	1.000	HMMPfam_NMT_C,superfamily_Acyl-CoA N-acyltransferases (Nat)	HMMPfam_NMT,HMMPfam_NMT_C,PatternScan_NMT_1,PatternScan_NMT_2,superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors
NRXN2	0	genome.wustl.edu	37	11	64393940	64393953	+	Frame_Shift_Del	DEL	TCGAGCAGCCACTC	TCGAGCAGCCACTC	-	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	TCGAGCAGCCACTC	TCGAGCAGCCACTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	11	64393940	64393953	TCGAGCAGCCACTC	-	DEL	NRXN2	NM_015080.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.3842_3829	p.E1277fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
PDILT	0	genome.wustl.edu	37	16	20373852	20373852	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	20373852	20373852	C	G	SNP	PDILT	NM_174924.1	human	genbank	58_37c	-1	provisional	missense	c.1290	p.L430F	0.438	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin	PatternScan_ER_TARGET,superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	-	no_errors
PIK3R4	0	genome.wustl.edu	37	3	130447357	130447357	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	3	130447357	130447357	T	C	SNP	PIK3R4	NM_014602.2	human	genbank	58_37c	-1	validated	missense	c.1757	p.N586S	1.000	superfamily_ARM-type_fold	HMMPfam_HEAT,HMMPfam_Pkinase_Tyr,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
PLEC	0	genome.wustl.edu	37	8	144991532	144991532	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	8	144991532	144991532	A	G	SNP	PLEC	NM_201380.2	human	genbank	58_37c	-1	reviewed	missense	c.12868	p.S4290P	1.000	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat	-	no_errors
POLR3A	0	genome.wustl.edu	37	10	79778932	79778932	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	79778932	79778932	G	T	SNP	POLR3A	NM_007055.3	human	genbank	58_37c	-1	validated	missense	c.1277	p.T426K	0.004	HMMPfam_RNA_pol_Rpb1_2,HMMSmart_RPOLA_N,superfamily_SSF64484	HMMPfam_RNA_pol_Rpb1_2,HMMSmart_RPOLA_N,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_4,superfamily_SSF64484	-	no_errors
RALGAPA1	0	genome.wustl.edu	37	14	36207803	36207803	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	14	36207803	36207803	G	A	SNP	RALGAPA1	NM_194301.2	human	genbank	58_37c	-1	provisional	silent	c.1503	p.N501	1.000	NULL	HMMPfam_Rap_GAP,superfamily_SSF111347	-	no_errors
RFWD2	0	genome.wustl.edu	37	1	176012377	176012377	+	Silent	SNP	A	A	T	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	176012377	176012377	A	T	SNP	RFWD2	NM_022457.5	human	genbank	58_37c	-1	validated	silent	c.1557	p.V519	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,HMMSmart_SM00184,superfamily_WD40 repeat-like,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_RING/U-box	-	no_errors
RYR2	0	genome.wustl.edu	37	1	237753140	237753140	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	237753140	237753140	A	G	SNP	RYR2	NM_001035.2	human	genbank	58_37c	+1	reviewed	missense	c.3646	p.N1216D	1.000	HMMPfam_SPRY,HMMSmart_SM00449	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SEC16A	0	genome.wustl.edu	37	9	139341757	139341757	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	9	139341757	139341757	G	A	SNP	SEC16A	NM_014866.1	human	genbank	58_37c	-1	validated	missense	c.6619	p.P2207S	0.003	NULL	NULL	-	no_errors
SERTAD1	0	genome.wustl.edu	37	19	40928890	40928890	+	Silent	SNP	T	T	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	40928890	40928890	T	G	SNP	SERTAD1	NM_013376.3	human	genbank	58_37c	-1	validated	silent	c.564	p.A188	0.902	NULL	HMMPfam_SERTA	-	no_errors
SHANK1	0	genome.wustl.edu	37	19	51217448	51217448	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	51217448	51217448	C	A	SNP	SHANK1	NM_016148.2	human	genbank	58_37c	-1	validated	missense	c.631	p.D211Y	1.000	superfamily_Ankyrin repeat	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_SH3_2	-	no_errors
SIGLEC15	0	genome.wustl.edu	37	18	43422081	43422081	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	18	43422081	43422081	C	T	SNP	SIGLEC15	NM_213602.2	human	genbank	58_37c	+1	validated	nonsense	c.916	p.Q306*	1.000	NULL	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
SPATS1	0	genome.wustl.edu	37	6	44328305	44328305	+	Missense_Mutation	SNP	C	C	T	rs150235811	byFrequency	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	6	44328305	44328305	C	T	SNP	SPATS1	NM_145026.3	human	genbank	58_37c	+1	validated	missense	c.410	p.T137M	0.958	NULL	NULL	-	no_errors
SR140	0	genome.wustl.edu	37	3	142753807	142753807	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	3	142753807	142753807	A	G	SNP	SR140	NM_001080415.1	human	genbank	58_37c	+1	provisional	missense	c.1931	p.E644G	1.000	HMMSmart_SM00582,superfamily_ENTH/VHS domain	HMMPfam_Surp,HMMSmart_SM00648,HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00582,superfamily_ENTH/VHS domain,superfamily_Surp module (SWAP domain Pfam 01805),superfamily_RNA-binding domain RBD	-	no_errors
STAT6	0	genome.wustl.edu	37	12	57493104	57493104	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	12	57493104	57493104	C	A	SNP	STAT6	NM_003153.4	human	genbank	58_37c	-1	reviewed	missense	c.1864	p.D622Y	1.000	HMMSmart_SM00252,superfamily_SH2 domain	HMMPfam_SH2,HMMSmart_SM00252,superfamily_p53-like transcription factors,HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_STAT,superfamily_SH2 domain	-	no_errors
TCF7L1	0	genome.wustl.edu	37	2	85529633	85529633	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	2	85529633	85529633	C	A	SNP	TCF7L1	NM_031283.1	human	genbank	58_37c	+1	provisional	missense	c.552	p.H184Q	0.997	HMMPfam_CTNNB1_binding	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box,HMMPfam_CTNNB1_binding	-	no_errors
TGM1	0	genome.wustl.edu	37	14	24724436	24724436	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	14	24724436	24724436	C	G	SNP	TGM1	NM_000359.2	human	genbank	58_37c	-1	reviewed	missense	c.1669	p.V557L	1.000	superfamily_SSF54001	HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_TGc,HMMPfam_Transglut_C,superfamily_Transglut_C,PatternScan_TRANSGLUTAMINASES,superfamily_Ig_E-set,superfamily_SSF54001	-	no_errors
TNN	0	genome.wustl.edu	37	1	175097249	175097249	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	175097249	175097249	G	A	SNP	TNN	NM_022093.1	human	genbank	58_37c	+1	validated	missense	c.3127	p.A1043T	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00181,superfamily_Fibronectin type III,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin	-	no_errors
TOP3A	0	genome.wustl.edu	37	17	18208428	18208465	+	Frame_Shift_Del	DEL	GCCTTACACACGTGGATAATCTCAAACCCGATGTTTTC	GCCTTACACACGTGGATAATCTCAAACCCGATGTTTTC	-	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	GCCTTACACACGTGGATAATCTCAAACCCGATGTTTTC	GCCTTACACACGTGGATAATCTCAAACCCGATGTTTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	17	18208428	18208465	GCCTTACACACGTGGATAATCTCAAACCCGATGTTTTC	-	DEL	TOP3A	NM_004618.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.497_460	p.E154fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.519:0.998:1.000:0.807:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.970:1.000:1.000:0.169:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00493,HMMPfam_Toprim	PatternScan_TOPOISOMERASE_I_PROK,superfamily_Prokaryotic type I DNA topoisomerase,PatternScan_AA_TRNA_LIGASE_I,HMMSmart_SM00436,HMMSmart_SM00437,HMMSmart_SM00493,HMMPfam_Toprim,HMMPfam_zf-GRF,HMMPfam_Topoisom_bac,HMMPfam_zf-C4_Topoisom,superfamily_Zinc beta-ribbon	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578394	7578394	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	17	7578394	7578394	T	C	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.536	p.H179R	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TPSAB1	0	genome.wustl.edu	37	16	1291454	1291454	+	Missense_Mutation	SNP	G	G	A	rs1141968	byCluster	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	1291454	1291454	G	A	SNP	TPSAB1	NM_003294.3	human	genbank	58_37c	+1	reviewed	missense	c.253	p.A85T	0.000	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
TRIM77	0	genome.wustl.edu	37	11	89515411	89515411	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	11	89515411	89515411	G	T	SNP	TRIM77	ENST00000398290	human	ensembl	58_37c	+1	known	missense	c.1222	p.V408F	0.938	HMMPfam_SPRY	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57845,superfamily_SSF57850	-	no_errors
TRPM5	0	genome.wustl.edu	37	11	2432879	2432879	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	11	2432879	2432879	C	T	SNP	TRPM5	NM_014555.3	human	genbank	58_37c	-1	validated	missense	c.2593	p.V865M	1.000	HMMPfam_Ion_trans	HMMPfam_Ion_trans	-	no_errors
TRPM8	0	genome.wustl.edu	37	2	234871945	234871945	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	2	234871945	234871945	G	A	SNP	TRPM8	NM_024080.4	human	genbank	58_37c	+1	validated	missense	c.1673	p.R558Q	0.999	NULL	HMMPfam_Ion_trans	-	no_errors
TXK	0	genome.wustl.edu	37	4	48115241	48115241	+	Silent	SNP	A	A	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	4	48115241	48115241	A	G	SNP	TXK	NM_003328.2	human	genbank	58_37c	-1	validated	silent	c.157	p.L53	0.000	superfamily_SH3	HMMPfam_SH2,HMMSmart_SH2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF55550	-	no_errors
UBN1	0	genome.wustl.edu	37	16	4924574	4924574	+	Silent	SNP	T	T	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	4924574	4924574	T	G	SNP	UBN1	NM_001079514.1	human	genbank	58_37c	+1	validated	silent	c.2163	p.P721	0.857	NULL	NULL	-	no_errors
UGT1A8	0	genome.wustl.edu	37	2	234526969	234526969	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	2	234526969	234526969	A	G	SNP	UGT1A8	NM_019076.4	human	genbank	58_37c	+1	reviewed	missense	c.616	p.R206G	0.999	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
VPS13C	0	genome.wustl.edu	37	15	62211583	62211583	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	15	62211583	62211583	C	G	SNP	VPS13C	NM_020821.1	human	genbank	58_37c	-1	validated	missense	c.7543	p.V2515L	1.000	NULL	HMMPfam_DUF1162	-	no_errors
YWHAH	0	genome.wustl.edu	37	22	32352686	32352686	+	Silent	SNP	T	T	C	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	22	32352686	32352686	T	C	SNP	YWHAH	NM_003405.3	human	genbank	58_37c	+1	reviewed	silent	c.648	p.Y216	1.000	HMMPfam_14-3-3,HMMSmart_SM00101,PatternScan_1433_2,superfamily_14-3-3 protein	HMMPfam_14-3-3,HMMSmart_SM00101,PatternScan_1433_1,PatternScan_1433_2,superfamily_14-3-3 protein	-	no_errors
ZFYVE28	0	genome.wustl.edu	37	4	2341251	2341251	+	Silent	SNP	C	C	G	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	4	2341251	2341251	C	G	SNP	ZFYVE28	NM_020972.2	human	genbank	58_37c	-1	validated	silent	c.450	p.L150	1.000	NULL	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger	-	no_errors
ZNF260	0	genome.wustl.edu	37	19	37006039	37006039	+	Silent	SNP	T	T	C	novel	unknown	TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	37006039	37006039	T	C	SNP	ZNF260	NM_001012756.2	human	genbank	58_37c	-1	validated	silent	c.102	p.K34	0.687	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
