Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
PANK4	55229	broad.mit.edu	36	1	2439497	2439497	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2439497	2439497	PANK4	1	T	T	A	54
MMEL1	79258	broad.mit.edu	36	1	2515210	2515210	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2515210	2515210	MMEL1	1	C	C	A	28
ZBTB17	7709	broad.mit.edu	36	1	16146090	16146090	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	16146090	16146090	ZBTB17	1	G	G	C	35
CSMD2	114784	broad.mit.edu	36	1	33771391	33771391	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	33771391	33771391	CSMD2	1	C	C	T	27
MTF1	4520	broad.mit.edu	36	1	38078292	38078292	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	38078292	38078292	MTF1	1	G	G	A	46
LEPRE1	64175	broad.mit.edu	36	1	42986028	42986028	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	42986028	42986028	LEPRE1	1	C	C	T	31
GLIS1	148979	broad.mit.edu	36	1	53744907	53744908	+	Missense_Mutation	DNP	GT	GT	TG	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	53744907	53744908	GLIS1	1	GT	GT	TG	48
C1orf85	112770	broad.mit.edu	36	1	154531311	154531311	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	154531311	154531311	C1orf85	1	C	C	T	18
FCRL5	83416	broad.mit.edu	36	1	155757585	155757585	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	155757585	155757585	FCRL5	1	A	A	G	9
HSD17B7	51478	broad.mit.edu	36	1	161039937	161039937	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	161039937	161039937	HSD17B7	1	G	G	A	39
PM20D1	148811	broad.mit.edu	36	1	204081137	204081137	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	204081137	204081137	PM20D1	1	C	C	G	22
MUC6	4588	broad.mit.edu	36	11	1008575	1008575	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	1008575	1008575	MUC6	11	G	G	T	39
KCNQ1	3784	broad.mit.edu	36	11	2825597	2825597	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2825597	2825597	KCNQ1	11	G	G	C	42
OR51S1	119692	broad.mit.edu	36	11	4826625	4826625	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	4826625	4826625	OR51S1	11	C	C	G	22
OR2AG2	338755	broad.mit.edu	36	11	6745955	6745955	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6745955	6745955	OR2AG2	11	T	T	G	56
NUP160	23279	broad.mit.edu	36	11	47826390	47826390	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	47826390	47826390	NUP160	11	G	G	A	38
OR5D14	219436	broad.mit.edu	36	11	55320009	55320009	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	55320009	55320009	OR5D14	11	T	T	C	49
INTS5	80789	broad.mit.edu	36	11	62172743	62172743	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	62172743	62172743	INTS5	11	A	A	G	15
ATG2A	23130	broad.mit.edu	36	11	64431868	64431870	+	Missense_Mutation	TNP	CTG	CTG	TCA	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	TNP	64431868	64431870	ATG2A	11	CTG	CTG	TCA	28
PITPNM1	9600	broad.mit.edu	36	11	67022229	67022230	+	Missense_Mutation	DNP	GC	GC	TG	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	67022229	67022230	PITPNM1	11	GC	GC	TG	42
SIDT2	51092	broad.mit.edu	36	11	116557414	116557414	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	116557414	116557414	SIDT2	11	C	C	A	21
BACE1	23621	broad.mit.edu	36	11	116691544	116691544	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	116691544	116691544	BACE1	11	A	A	G	3
ABCB9	23457	broad.mit.edu	36	12	121980614	121980614	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	121980614	121980614	ABCB9	12	G	G	A	39
CENPJ	55835	broad.mit.edu	36	13	24378632	24378632	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24378632	24378632	CENPJ	13	G	G	T	48
PCDH17	27253	broad.mit.edu	36	13	57107191	57107191	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	57107191	57107191	PCDH17	13	C	C	A	18
KLHL1	57626	broad.mit.edu	36	13	69579662	69579662	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	69579662	69579662	KLHL1	13	G	G	A	45
TNFSF13B	10673	broad.mit.edu	36	13	107720506	107720506	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	107720506	107720506	TNFSF13B	13	G	G	C	38
ALKBH1	8846	broad.mit.edu	36	14	77230865	77230865	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	77230865	77230865	ALKBH1	14	C	C	T	32
PLCB2	5330	broad.mit.edu	36	15	38368263	38368263	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38368263	38368263	PLCB2	15	A	A	C	7
WDR90	197335	broad.mit.edu	36	16	643656	643657	+	Missense_Mutation	DNP	TT	TT	CC	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	643656	643657	WDR90	16	TT	TT	CC	60
RNPS1	10921	broad.mit.edu	36	16	2245709	2245709	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2245709	2245709	RNPS1	16	C	C	A	32
PAQR4	124222	broad.mit.edu	36	16	2961897	2961898	+	Missense_Mutation	DNP	GG	GG	CT	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	2961897	2961898	PAQR4	16	GG	GG	CT	39
KATNB1	10300	broad.mit.edu	36	16	56344611	56344611	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56344611	56344611	KATNB1	16	T	T	G	55
METT10D	79066	broad.mit.edu	36	17	2270377	2270377	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	2270377	2270377	METT10D	17	G	G	A	39
OR3A1	4994	broad.mit.edu	36	17	3141985	3141985	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3141985	3141985	OR3A1	17	C	C	T	21
CHRNB1	1140	broad.mit.edu	36	17	7289199	7289199	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7289199	7289199	CHRNB1	17	T	T	C	55
KCNH6	81033	broad.mit.edu	36	17	58955404	58955404	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	58955404	58955404	KCNH6	17	G	G	T	38
ANKRD12	23253	broad.mit.edu	36	18	9198762	9198762	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	9198762	9198762	ANKRD12	18	G	G	A	42
SMAD7	4092	broad.mit.edu	36	18	44730313	44730313	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	44730313	44730313	SMAD7	18	G	G	T	46
SMARCA4	6597	broad.mit.edu	36	19	11005525	11005526	+	Missense_Mutation	DNP	AG	AG	CA	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	11005525	11005526	SMARCA4	19	AG	AG	CA	11
AKAP8	10270	broad.mit.edu	36	19	15344906	15344906	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	15344906	15344906	AKAP8	19	C	C	A	27
ANO8	57719	broad.mit.edu	36	19	17301630	17301630	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17301630	17301630	ANO8	19	A	A	T	10
KCNN1	3780	broad.mit.edu	36	19	17945992	17945992	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17945992	17945992	KCNN1	19	C	C	G	28
NUDT19	390916	broad.mit.edu	36	19	37875230	37875231	+	Missense_Mutation	DNP	CG	CG	AC	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	37875230	37875231	NUDT19	19	CG	CG	AC	23
IRGQ	126298	broad.mit.edu	36	19	48789034	48789034	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	48789034	48789034	IRGQ	19	T	T	G	59
FCAR	2204	broad.mit.edu	36	19	60092891	60092891	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	60092891	60092891	FCAR	19	C	C	T	31
BRSK1	84446	broad.mit.edu	36	19	60505999	60505999	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	60505999	60505999	BRSK1	19	G	G	A	42
NLRP5	126206	broad.mit.edu	36	19	61230253	61230253	+	Missense_Mutation	SNP	C	C	T	rs45627733	Unknown	TCGA-04-1342-01	TCGA-04-1342-11			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	61230253	61230253	NLRP5	19	C	C	T	19
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48727389	48727389	+	Missense_Mutation	SNP	G	G	A	rs61754876	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	48727389	48727389	STON1-GTF2A1L	2	G	G	A	40
SNRNP200	23020	broad.mit.edu	36	2	96321311	96321311	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	96321311	96321311	SNRNP200	2	G	G	A	39
CNNM3	26505	broad.mit.edu	36	2	96846657	96846658	+	Missense_Mutation	DNP	AA	AA	CT	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	96846657	96846658	CNNM3	2	AA	AA	CT	5
MARS2	92935	broad.mit.edu	36	2	198279841	198279841	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	198279841	198279841	MARS2	2	G	G	T	42
SLCO4A1	28231	broad.mit.edu	36	20	60768244	60768244	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	60768244	60768244	SLCO4A1	20	G	G	C	42
DGCR2	9993	broad.mit.edu	36	22	17406556	17406556	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17406556	17406556	DGCR2	22	C	C	A	27
LZTR1	8216	broad.mit.edu	36	22	19666711	19666712	+	Missense_Mutation	DNP	AG	AG	CA	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	19666711	19666712	LZTR1	22	AG	AG	CA	7
MICALL1	85377	broad.mit.edu	36	22	36650624	36650624	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	36650624	36650624	MICALL1	22	G	G	T	37
CHKB	1120	broad.mit.edu	36	22	49364798	49364799	+	Nonsense_Mutation	DNP	CA	CA	AC	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	DNP	49364798	49364799	CHKB	22	CA	CA	AC	25
GRIP2	80852	broad.mit.edu	36	3	14511477	14511477	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	14511477	14511477	GRIP2	3	G	G	A	38
SCN10A	6336	broad.mit.edu	36	3	38777222	38777222	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	38777222	38777222	SCN10A	3	G	G	A	38
LAMB2	3913	broad.mit.edu	36	3	49136172	49136172	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49136172	49136172	LAMB2	3	C	C	T	30
BSN	8927	broad.mit.edu	36	3	49663128	49663128	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49663128	49663128	BSN	3	C	C	T	23
ZNF721	170960	broad.mit.edu	36	4	426638	426638	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	426638	426638	ZNF721	4	G	G	A	48
WHSC2	7469	broad.mit.edu	36	4	1955019	1955019	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	1955019	1955019	WHSC2	4	C	C	A	25
RAB28	9364	broad.mit.edu	36	4	12992272	12992272	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	12992272	12992272	RAB28	4	G	G	A	40
KIT	3815	broad.mit.edu	36	4	55299419	55299419	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	55299419	55299419	KIT	4	T	T	C	50
UGT2B17	7367	broad.mit.edu	36	4	69116706	69116706	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	69116706	69116706	UGT2B17	4	G	G	A	48
SLC12A7	10723	broad.mit.edu	36	5	1129888	1129889	+	Nonsense_Mutation	DNP	CC	CC	GT	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	DNP	1129888	1129889	SLC12A7	5	CC	CC	GT	26
MTRR	4552	broad.mit.edu	36	5	7950055	7950055	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7950055	7950055	MTRR	5	G	G	T	43
ANKRD32	84250	broad.mit.edu	36	5	94056760	94056760	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	94056760	94056760	ANKRD32	5	T	T	C	51
WDR36	134430	broad.mit.edu	36	5	110474532	110474532	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	110474532	110474532	WDR36	5	A	A	G	8
CAMK4	814	broad.mit.edu	36	5	110847627	110847627	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	110847627	110847627	CAMK4	5	C	C	A	27
REEP2	51308	broad.mit.edu	36	5	137802824	137802824	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	137802824	137802824	REEP2	5	G	G	A	44
PCDHA11	56138	broad.mit.edu	36	5	140229831	140229831	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140229831	140229831	PCDHA11	5	A	A	G	7
PCDHB14	56122	broad.mit.edu	36	5	140584797	140584797	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140584797	140584797	PCDHB14	5	C	C	G	18
SH3PXD2B	285590	broad.mit.edu	36	5	171698541	171698541	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	171698541	171698541	SH3PXD2B	5	A	A	C	9
KCND2	3751	broad.mit.edu	36	7	119702804	119702804	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	119702804	119702804	KCND2	7	C	C	G	32
FEZF1	389549	broad.mit.edu	36	7	121730470	121730470	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	121730470	121730470	FEZF1	7	C	C	T	27
GDF6	392255	broad.mit.edu	36	8	97241878	97241878	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	97241878	97241878	GDF6	8	G	G	A	40
PLEC	5339	broad.mit.edu	36	8	145078380	145078380	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	145078380	145078380	PLEC	8	C	C	T	23
S1PR3	1903	broad.mit.edu	36	9	90806932	90806932	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	90806932	90806932	S1PR3	9	G	G	C	37
C9orf129	445577	broad.mit.edu	36	9	95121273	95121273	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	95121273	95121273	C9orf129	9	T	T	G	57
PAPPA	5069	broad.mit.edu	36	9	118104947	118104947	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	118104947	118104947	PAPPA	9	C	C	G	19
TLR4	7099	broad.mit.edu	36	9	119515072	119515072	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	119515072	119515072	TLR4	9	A	A	G	4
C9orf16	79095	broad.mit.edu	36	9	129965712	129965712	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	129965712	129965712	C9orf16	9	C	C	G	24
C9orf114	51490	broad.mit.edu	36	9	130629169	130629169	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	130629169	130629169	C9orf114	9	C	C	T	29
L1CAM	3897	broad.mit.edu	36	X	152783059	152783059	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Nonsense_Mutation	SNP	152783059	152783059	L1CAM	23	C	C	T	22
WDR81	124997	broad.mit.edu	36	17	1578265	1578271	+	Frame_Shift_Del	DEL	GGGCTCT	-	-	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	1578265	1578271	WDR81	17	GGGCTCT	-	-	39
MCM5	4174	broad.mit.edu	36	22	34147330	34147332	+	In_Frame_Del	DEL	CGC	-	CGC	novel	Unknown	TCGA-04-1342-01	TCGA-04-1342-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	34147330	34147332	MCM5	22	CGC	-	CGC	27
