Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
CSMD1	64478	genome.wustl.edu	36	8	3254480	3254480	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	3254480	3254480	CSMD1	8	C	C	G	23
RREB1	6239	genome.wustl.edu	36	6	7193751	7193751	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7193751	7193751	RREB1	6	C	C	G	26
DNAH2	146754	genome.wustl.edu	36	17	7636358	7636358	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7636358	7636358	DNAH2	17	C	C	G	28
MYH1	4619	genome.wustl.edu	36	17	10341378	10341378	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	10341378	10341378	MYH1	17	T	T	C	52
RUNDC2A	84127	genome.wustl.edu	36	16	12044377	12044377	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	12044377	12044377	RUNDC2A	16	A	A	G	5
ENSG00000218758		genome.wustl.edu	36	19	12219175	12219175	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	12219175	12219175	ENSG00000218758	19	G	G	C	44
ITGA8	8516	genome.wustl.edu	36	10	15766093	15766093	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	15766093	15766093	ITGA8	10	T	T	C	58
RRBP1	6238	genome.wustl.edu	36	20	17550521	17550521	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	17550521	17550521	RRBP1	20	T	T	C	60
RRBP1	6238	genome.wustl.edu	36	20	17587676	17587676	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	17587676	17587676	RRBP1	20	C	C	T	31
IGSF21	84966	genome.wustl.edu	36	1	18577378	18577378	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	18577378	18577378	IGSF21	1	G	G	A	38
SLC24A2	25769	genome.wustl.edu	36	9	19518072	19518072	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	19518072	19518072	SLC24A2	9	T	T	G	57
USP31	57478	genome.wustl.edu	36	16	22987633	22987633	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	22987633	22987633	USP31	16	C	C	T	20
ZNF724P	440519	genome.wustl.edu	36	19	23197370	23197370	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	23197370	23197370	ZNF724P	19	T	T	C	57
LOXL2	4017	genome.wustl.edu	36	8	23273616	23273616	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	23273616	23273616	LOXL2	8	C	C	T	23
SEZ6L	23544	genome.wustl.edu	36	22	25066599	25066599	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	25066599	25066599	SEZ6L	22	G	G	A	44
EOMES	8320	genome.wustl.edu	36	3	27735905	27735905	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	27735905	27735905	EOMES	3	C	C	T	23
TUBB	203068	genome.wustl.edu	36	6	30799238	30799238	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	30799238	30799238	TUBB	6	C	C	T	27
ZBTB22	9278	genome.wustl.edu	36	6	33392524	33392524	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	33392524	33392524	ZBTB22	6	G	G	A	46
CELF4	56853	genome.wustl.edu	36	18	33399517	33399517	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	33399517	33399517	CELF4	18	C	C	G	20
ENSG00000205454		genome.wustl.edu	36	16	33554989	33554989	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	33554989	33554989	ENSG00000205454	16	T	T	C	54
C5orf33	133686	genome.wustl.edu	36	5	36253704	36253704	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	36253704	36253704	C5orf33	5	C	C	T	30
PDXP	57026	genome.wustl.edu	36	22	36391596	36391596	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	36391596	36391596	PDXP	22	C	C	T	25
ARID2	196528	genome.wustl.edu	36	12	44530398	44530398	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	44530398	44530398	ARID2	12	C	C	T	32
SUPT5H	6829	genome.wustl.edu	36	19	44651282	44651282	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	44651282	44651282	SUPT5H	19	G	G	C	45
SOCS5	9655	genome.wustl.edu	36	2	46840459	46840459	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	46840459	46840459	SOCS5	2	G	G	A	37
DMXL2	23312	genome.wustl.edu	36	15	49615243	49615243	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	49615243	49615243	DMXL2	15	A	A	G	1
DOCK3	1795	genome.wustl.edu	36	3	51345667	51345667	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	51345667	51345667	DOCK3	3	C	C	A	18
RAB3C	115827	genome.wustl.edu	36	5	58057676	58057676	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	58057676	58057676	RAB3C	5	G	G	A	45
IL12RB2	3595	genome.wustl.edu	36	1	67567950	67567950	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	67567950	67567950	IL12RB2	1	C	C	A	20
TAF1	6872	genome.wustl.edu	36	X	70519672	70519672	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	70519672	70519672	TAF1	23	G	G	A	44
INPPL1	3636	genome.wustl.edu	36	11	71618898	71618898	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	71618898	71618898	INPPL1	11	G	G	A	39
TYW3	127253	genome.wustl.edu	36	1	74974865	74974865	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	74974865	74974865	TYW3	1	A	A	G	14
ENSG00000185040		genome.wustl.edu	36	7	76005931	76005931	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	A	A	A	G	A	G	Unknown	Valid	Germline	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	76005931	76005931	ENSG00000185040	7	A	A	G	6
INTS4	92105	genome.wustl.edu	36	11	77349752	77349752	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	77349752	77349752	INTS4	11	G	G	C	45
ADAMTSL3	57188	genome.wustl.edu	36	15	82442256	82442256	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	82442256	82442256	ADAMTSL3	15	C	C	T	19
DPYD	1806	genome.wustl.edu	36	1	97787842	97787842	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	97787842	97787842	DPYD	1	T	T	G	55
KIAA1529	57653	genome.wustl.edu	36	9	99125025	99125025	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	99125025	99125025	KIAA1529	9	G	G	C	44
GRIA4	2893	genome.wustl.edu	36	11	105281230	105281230	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	105281230	105281230	GRIA4	11	C	C	A	24
PREP	5550	genome.wustl.edu	36	6	105843334	105843334	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	105843334	105843334	PREP	6	G	G	A	47
IL13RA2	3598	genome.wustl.edu	36	X	114151587	114151587	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	114151587	114151587	IL13RA2	23	A	A	G	16
KIAA1210	57481	genome.wustl.edu	36	X	118107527	118107527	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	118107527	118107527	KIAA1210	23	C	C	T	26
CIT	11113	genome.wustl.edu	36	12	118693045	118693045	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	118693045	118693045	CIT	12	C	C	T	19
CLIP1	6249	genome.wustl.edu	36	12	121387219	121387219	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	121387219	121387219	CLIP1	12	C	C	A	30
OR8G5	219865	genome.wustl.edu	36	11	123640505	123640505	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	123640505	123640505	OR8G5	11	G	G	A	40
TMEM108	66000	genome.wustl.edu	36	3	134582107	134582107	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	134582107	134582107	TMEM108	3	G	G	A	47
PCDHGA5	56110	genome.wustl.edu	36	5	140726494	140726494	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	140726494	140726494	PCDHGA5	5	C	C	T	27
LRP1B	53353	genome.wustl.edu	36	2	140975767	140975767	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	140975767	140975767	LRP1B	2	C	C	T	21
TIGD4	201798	genome.wustl.edu	36	4	153911130	153911130	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	153911130	153911130	TIGD4	4	C	C	T	31
TBR1	10716	genome.wustl.edu	36	2	161981629	161981629	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	161981629	161981629	TBR1	2	C	C	T	19
SCN3A	6328	genome.wustl.edu	36	2	165702870	165702870	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	165702870	165702870	SCN3A	2	A	A	T	3
LRP2	4036	genome.wustl.edu	36	2	169752926	169752926	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	169752926	169752926	LRP2	2	C	C	T	27
DUSP1	1843	genome.wustl.edu	36	5	172129301	172129301	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	172129301	172129301	DUSP1	5	C	C	T	19
BOD1	91272	genome.wustl.edu	36	5	172972860	172972860	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	172972860	172972860	BOD1	5	G	G	A	34
TTN	7273	genome.wustl.edu	36	2	179341885	179341885	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	179341885	179341885	TTN	2	G	G	C	34
CDK15	65061	genome.wustl.edu	36	2	202408661	202408661	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	202408661	202408661	CDK15	2	G	G	A	40
NGEF	25791	genome.wustl.edu	36	2	233467843	233467843	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	233467843	233467843	NGEF	2	C	C	A	26
OR2T6	254879	genome.wustl.edu	36	1	246617696	246617696	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	246617696	246617696	OR2T6	1	T	T	C	54
TP53	7157	genome.wustl.edu	36	17	7518945	7518949	+	Frame_Shift_Del	DEL	TTTCT	TTTCT	-	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	TTTCT	TTTCT	TTTCT	-	TTTCT	TTTCT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	7518945	7518949	TP53	17	TTTCT	TTTCT	-	60
OLFM3	118427	genome.wustl.edu	36	1	102063368	102063368	+	Missense_Mutation	SNP	C	C	G		Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	G	C	C	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	102063368	102063368	OLFM3	1	C	C	G	31
PRR5L	79899	genome.wustl.edu	36	11	36397401	36397401	+	Missense_Mutation	SNP	T	T	A		Unknown	TCGA-04-1343-01	TCGA-04-1343-10	T	T	T	A	T	T	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	36397401	36397401	PRR5L	11	T	T	A	56
SYT9	143425	genome.wustl.edu	36	11	7395807	7395807	+	Silent	SNP	G	G	T		Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	T	G	G	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	7395807	7395807	SYT9	11	G	G	T	45
PCF11	51585	genome.wustl.edu	36	11	82546129	82546129	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	82546129	82546129	PCF11	11	A	A	C	5
KIAA0802	23255	genome.wustl.edu	36	18	8816019	8816019	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	8816019	8816019	KIAA0802	18	G	G	T	46
KIAA0802	23255	genome.wustl.edu	36	18	8816031	8816031	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	8816031	8816031	KIAA0802	18	G	G	T	43
NR4A2	4929	genome.wustl.edu	36	2	156894112	156894112	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	156894112	156894112	NR4A2	2	C	C	T	27
ZBTB20	26137	genome.wustl.edu	36	3	115552108	115552108	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	115552108	115552108	ZBTB20	3	C	C	A	28
CCDC61	729440	genome.wustl.edu	36	19	51201717	51201717	+	Missense_Mutation	SNP	C	C	A		Unknown	TCGA-04-1343-01	TCGA-04-1343-10	C	C	C	A	C	C	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	51201717	51201717	CCDC61	19	C	C	A	23
