Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2M	2	broad.mit.edu	37	12	9246133	9246133	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AAA1	404744	broad.mit.edu	37	7	34604742	34604742	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94479896	94479896	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC1	4363	broad.mit.edu	37	16	16110392	16110392	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17414502	17414502	+	3'UTR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD11	83451	broad.mit.edu	37	7	73152074	73152074	+	Intron	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAT2	39	broad.mit.edu	37	6	160199778	160199778	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS3	79611	broad.mit.edu	37	12	81610622	81610622	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR1B	10120	broad.mit.edu	37	2	98274305	98274306	+	Intron	INS	-	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39678647	39678647	+	Silent	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106091753	106091753	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107113929	107113929	+	RNA	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107114329	107114329	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM9	8754	broad.mit.edu	37	8	38884267	38884267	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMDEC1	27299	broad.mit.edu	37	8	24250787	24250788	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77356169	77356170	+	Intron	DNP	GG	TT	TT			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43847848	43847848	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64532753	64532753	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADC	113451	broad.mit.edu	37	1	33567486	33567487	+	Intron	DNP	CC	AA	AA			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70900436	70900436	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1	60312	broad.mit.edu	37	4	7870433	7870433	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFG3L2	10939	broad.mit.edu	37	18	12351047	12351047	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49332850	49332850	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNAD1	254268	broad.mit.edu	37	1	109385769	109385769	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALCAM	214	broad.mit.edu	37	3	105258815	105258815	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58247366	58247366	+	3'UTR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG10B	144245	broad.mit.edu	37	12	38714474	38714474	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH7	84266	broad.mit.edu	37	19	6374125	6374125	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38431763	38431763	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61847894	61847894	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD12	23253	broad.mit.edu	37	18	9256880	9256880	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD5	63926	broad.mit.edu	37	20	10019172	10019172	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26669265	26669265	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXRL	195977	broad.mit.edu	37	10	47664547	47664547	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOC3	8639	broad.mit.edu	37	17	41003593	41003593	+	Missense_Mutation	SNP	G	T	T	rs402680		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3S1	1176	broad.mit.edu	37	5	115202461	115202461	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4E1	23431	broad.mit.edu	37	15	51223057	51223057	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1	322	broad.mit.edu	37	11	6424580	6424580	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112176102	112176102	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP4	361	broad.mit.edu	37	18	24442010	24442010	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141059221	141059221	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144244727	144244727	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128839487	128839487	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128848784	128848784	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46233323	46233323	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC2	84071	broad.mit.edu	37	6	109286139	109286139	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23322839	23322839	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB4	51666	broad.mit.edu	37	7	95157271	95157271	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCL4	121549	broad.mit.edu	37	12	108169129	108169129	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119957753	119957753	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	120006962	120006962	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47582536	47582536	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25263343	25263343	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193130416	193130416	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193176932	193176932	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36051578	36051578	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5C1	509	broad.mit.edu	37	10	7841882	7841882	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9A	10079	broad.mit.edu	37	20	50230268	50230268	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAAT	570	broad.mit.edu	37	9	104133326	104133326	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11046745	11046745	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11076095	11076095	+	Intron	SNP	T	A	A	rs145477924	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156622659	156622659	+	Silent	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	59161875	59161875	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BFSP2	8419	broad.mit.edu	37	3	133119134	133119134	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP1	649	broad.mit.edu	37	8	22035126	22035126	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13600498	13600498	+	Intron	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100617171	100617171	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf2	56652	broad.mit.edu	37	10	102753132	102753132	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf68	79741	broad.mit.edu	37	10	33000699	33000699	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57252703	57252703	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75038451	75038451	+	Silent	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75055724	75055724	+	Silent	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75065524	75065524	+	Silent	SNP	C	G	G	rs74093443	byFrequency;by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf185	359710	broad.mit.edu	37	20	31656612	31656612	+	Missense_Mutation	SNP	C	G	G	rs113939875		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	45987842	45987842	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf78	388960	broad.mit.edu	37	2	74040815	74040815	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf86	51057	broad.mit.edu	37	2	63743776	63743779	+	Intron	DEL	TGGA	-	-	rs148588785		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf14	57415	broad.mit.edu	37	3	62317136	62317136	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf22	255119	broad.mit.edu	37	4	81463318	81463318	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5AR1	728	broad.mit.edu	37	19	47823817	47823817	+	Silent	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf36	285600	broad.mit.edu	37	5	93755719	93755719	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165723210	165723211	+	5'Flank	DNP	CC	AG	AG			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf167	253714	broad.mit.edu	37	6	97676987	97676987	+	Missense_Mutation	SNP	C	A	A	rs141217754		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57351650	57351650	+	Silent	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57406510	57406510	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57420542	57420542	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf102	375748	broad.mit.edu	37	9	98690876	98690876	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf95	54981	broad.mit.edu	37	9	77697980	77697980	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAB39	51719	broad.mit.edu	37	2	231682502	231682502	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181701820	181701820	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81643766	81643766	+	Silent	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	2024144	2024144	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD16	114769	broad.mit.edu	37	11	104915140	104915140	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD16	114769	broad.mit.edu	37	11	104915311	104915311	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC4	113201	broad.mit.edu	37	15	44647365	44647365	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERB	79820	broad.mit.edu	37	14	92070853	92070853	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCAR1	55749	broad.mit.edu	37	10	70509455	70509455	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC113	29070	broad.mit.edu	37	16	58296307	58296307	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC123	84902	broad.mit.edu	37	19	33444401	33444401	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31691641	31691641	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55546086	55546086	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD40	958	broad.mit.edu	37	20	44750366	44750366	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227279520	227279520	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21752443	21752443	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83378607	83378607	+	Silent	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19839214	19839214	+	5'UTR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31323411	31323411	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61851230	61851230	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26886246	26886246	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK12	51755	broad.mit.edu	37	17	37667755	37667755	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK14	5218	broad.mit.edu	37	7	90328883	90328886	+	Intron	DEL	AAGT	-	-			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123173549	123173549	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL2	124359	broad.mit.edu	37	16	80646392	80646392	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM20	125931	broad.mit.edu	37	19	45029235	45029235	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEL	1056	broad.mit.edu	37	9	135944036	135944036	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214830826	214830826	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP350	9857	broad.mit.edu	37	1	179983551	179983551	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP70	80321	broad.mit.edu	37	3	138219396	138219396	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD2	1106	broad.mit.edu	37	15	93467813	93467813	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136623209	136623209	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86913416	86913416	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC1B	51266	broad.mit.edu	37	12	10150761	10150761	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLINT1	9685	broad.mit.edu	37	5	157232889	157232889	+	Silent	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS1	157807	broad.mit.edu	37	8	62289355	62289355	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLYBL	171425	broad.mit.edu	37	13	100518543	100518543	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79029704	79029705	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	99005961	99005961	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR1	10256	broad.mit.edu	37	1	26507069	26507069	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41333204	41333204	+	Silent	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3067780	3067780	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147259419	147259419	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76572213	76572213	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103487271	103487272	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75829168	75829168	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75837950	75837950	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71716657	71716657	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121259925	121259925	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94041394	94041394	+	Silent	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86622110	86622110	+	5'UTR	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48375180	48375180	+	Splice_Site	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70944769	70944769	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO6	84940	broad.mit.edu	37	17	27943884	27943884	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIPT	9419	broad.mit.edu	37	2	46851446	46851446	+	3'UTR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP1	167	broad.mit.edu	37	6	49814333	49814333	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRLF2	64109	broad.mit.edu	37	X	1327821	1327821	+	Intron	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSDA	8531	broad.mit.edu	37	12	10868261	10868261	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34166388	34166388	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113504781	113504781	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113569006	113569006	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80349125	80349125	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80684166	80684166	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16911667	16911667	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49039979	49039979	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf41	139212	broad.mit.edu	37	X	106462128	106462128	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYBB	1536	broad.mit.edu	37	X	37653114	37653115	+	Intron	DNP	GG	TT	TT			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2B6	1555	broad.mit.edu	37	19	41509908	41509908	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15784478	15784478	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F2	8529	broad.mit.edu	37	19	16000637	16000637	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM1	23002	broad.mit.edu	37	14	59805210	59805210	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85404023	85404023	+	Silent	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	122004416	122004416	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50994155	50994155	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC2	51473	broad.mit.edu	37	6	24291344	24291344	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEAF1	10522	broad.mit.edu	37	11	674761	674761	+	Silent	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1A	57706	broad.mit.edu	37	9	126164228	126164228	+	Intron	SNP	A	T	T	rs138560936	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DERL2	51009	broad.mit.edu	37	17	5388597	5388597	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLD	1738	broad.mit.edu	37	7	107557190	107557190	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRTB1	63948	broad.mit.edu	37	1	53927166	53927166	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7667441	7667441	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7671592	7671592	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13794128	13794128	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13811941	13811941	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB3	414061	broad.mit.edu	37	2	234652498	234652498	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNER	92737	broad.mit.edu	37	2	230223358	230223358	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111409724	111409724	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	115318677	115318677	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113849973	113849973	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100491011	100491011	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28935116	28935116	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56484807	56484807	+	Intron	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102508276	102508276	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDARADD	128178	broad.mit.edu	37	1	236645924	236645924	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83356068	83356068	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHA2	286097	broad.mit.edu	37	8	16976124	16976124	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHC1	114327	broad.mit.edu	37	6	52303263	52303263	+	Silent	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110914644	110914644	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHHADH	1962	broad.mit.edu	37	3	184910322	184910322	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4E2	9470	broad.mit.edu	37	2	233421264	233421264	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF6	3692	broad.mit.edu	37	20	33867098	33867098	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	36934500	36934500	+	Silent	SNP	G	T	T	rs140840691		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENO2	2026	broad.mit.edu	37	12	7026685	7026685	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89390872	89390872	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66355978	66355978	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB3	2065	broad.mit.edu	37	12	56493860	56493860	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC1	23085	broad.mit.edu	37	12	1553905	1553905	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERP27	121506	broad.mit.edu	37	12	15091206	15091206	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66005981	66005981	+	Silent	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM131A	131408	broad.mit.edu	37	3	184059582	184059582	+	5'UTR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139153549	139153550	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139487412	139487412	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM194A	131831	broad.mit.edu	37	3	150386939	150386939	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM198B	51313	broad.mit.edu	37	4	159052016	159052016	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM45B	55855	broad.mit.edu	37	X	129629298	129629298	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM45B	55855	broad.mit.edu	37	X	129629602	129629602	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34149861	34149861	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34961693	34961693	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55B	120406	broad.mit.edu	37	11	114569284	114569284	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANK1	92565	broad.mit.edu	37	10	127614990	127614990	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187510357	187510357	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187542211	187542211	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2A	2212	broad.mit.edu	37	1	161476437	161476437	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN1	2219	broad.mit.edu	37	9	137802911	137802911	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157773775	157773775	+	Missense_Mutation	SNP	G	A	A	rs149142723	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157776929	157776929	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102915627	102915627	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72756929	72756929	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152276508	152276508	+	Silent	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO3	2328	broad.mit.edu	37	1	171073164	171073164	+	Intron	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO5	2330	broad.mit.edu	37	1	146696267	146696267	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216271930	216271930	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159682107	159682107	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14737453	14737453	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1	2483	broad.mit.edu	37	4	190882077	190882077	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13779741	13779741	+	Intron	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32786357	32786357	+	Intron	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49190205	49190205	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUBP1	8880	broad.mit.edu	37	1	78414388	78414388	+	3'UTR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46973176	46973176	+	Silent	SNP	C	A	A	rs147092196		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46066479	46066479	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173301433	173301433	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173530780	173530780	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAPVD1	26130	broad.mit.edu	37	9	128092250	128092250	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GARS	2617	broad.mit.edu	37	7	30643155	30643155	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22749300	22749300	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDPD2	54857	broad.mit.edu	37	X	69652880	69652880	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT1	2673	broad.mit.edu	37	2	69564982	69564982	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGCX	2677	broad.mit.edu	37	2	85781383	85781383	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42468092	42468092	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIF	2694	broad.mit.edu	37	11	59599306	59599306	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDN	342035	broad.mit.edu	37	15	51693895	51693895	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDN	342035	broad.mit.edu	37	15	51696845	51696845	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121684803	121684803	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA4	441509	broad.mit.edu	37	X	102968324	102968324	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT1D1	144423	broad.mit.edu	37	12	129360407	129360407	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT1D1	144423	broad.mit.edu	37	12	129467672	129467672	+	3'UTR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133381309	133381309	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20335217	20335217	+	Silent	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135405117	135405117	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100354500	100354500	+	Intron	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR139	124274	broad.mit.edu	37	16	20043715	20043715	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR142	350383	broad.mit.edu	37	17	72366624	72366625	+	Intron	DNP	CC	GA	GA			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25770142	25770143	+	Intron	INS	-	T	T	rs147807917	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90002055	90002055	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11756634	11756634	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105623720	105623720	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105797709	105797709	+	Intron	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94411878	94411878	+	Silent	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102069929	102069929	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	10007565	10007565	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146720539	146720539	+	Silent	SNP	G	A	A	rs114187147	byFrequency;by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126750299	126750299	+	Intron	SNP	C	T	T	rs148110562	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1A	2978	broad.mit.edu	37	6	42146406	42146406	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21395902	21395902	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21501710	21501710	+	Intron	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GVIN1	387751	broad.mit.edu	37	11	6738832	6738832	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR1	26762	broad.mit.edu	37	5	156476071	156476071	+	Silent	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45481730	45481730	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGF	3068	broad.mit.edu	37	1	156714082	156714082	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41057162	41057162	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197187402	197187402	+	Intron	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM	220296	broad.mit.edu	37	11	124789919	124789919	+	3'UTR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65392258	65392258	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHLA3	11147	broad.mit.edu	37	1	70820791	70820791	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186008791	186008791	+	Intron	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK1	51361	broad.mit.edu	37	1	60324150	60324150	+	Silent	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD1	3231	broad.mit.edu	37	2	177054663	177054663	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B7P2	158160	broad.mit.edu	37	10	38654351	38654351	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSDL2	84263	broad.mit.edu	37	9	115203869	115203869	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AB2P	391634	broad.mit.edu	37	4	13338163	13338163	+	RNA	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYAL4	23553	broad.mit.edu	37	7	123516914	123516914	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70842025	70842025	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI16	3428	broad.mit.edu	37	1	159002342	159002342	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2	3481	broad.mit.edu	37	11	2161390	2161390	+	5'Flank	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IK	3550	broad.mit.edu	37	5	140034410	140034410	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104984384	104984384	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL25	64806	broad.mit.edu	37	14	23842337	23842337	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7	3574	broad.mit.edu	37	8	79672800	79672800	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187542043	187542043	+	3'UTR	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB3	3690	broad.mit.edu	37	17	45368339	45368339	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPRIPL1	150771	broad.mit.edu	37	2	96992793	96992795	+	In_Frame_Del	DEL	GAG	-	-			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124181325	124181325	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK2	25959	broad.mit.edu	37	19	11286646	11286646	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	119915005	119915005	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63316464	63316464	+	Silent	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19384041	19384041	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88652311	88652311	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB2	10242	broad.mit.edu	37	3	178560796	178560796	+	3'UTR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ3	3786	broad.mit.edu	37	8	133198302	133198302	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNS3	3790	broad.mit.edu	37	2	18113551	18113551	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196227513	196227513	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44176735	44176736	+	3'UTR	DNP	GG	TT	TT			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	7046800	7046800	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1024	23251	broad.mit.edu	37	15	79755386	79755386	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1257	57501	broad.mit.edu	37	3	128711899	128711899	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1919	91749	broad.mit.edu	37	6	111585053	111585053	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13B	23303	broad.mit.edu	37	8	28998003	28998003	+	Silent	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	21009107	21009107	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39750632	39750632	+	Splice_Site	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901229	51901229	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5C	3800	broad.mit.edu	37	2	149806425	149806425	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55271927	55271927	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL3	115653	broad.mit.edu	37	19	55247199	55247199	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DX1	90011	broad.mit.edu	37	19	55048563	55048563	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158061152	158061152	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF8	11279	broad.mit.edu	37	X	56269682	56269682	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT12	3859	broad.mit.edu	37	17	39019875	39019875	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT15	3866	broad.mit.edu	37	17	39671752	39671752	+	Missense_Mutation	SNP	G	C	C	rs138894344		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT26	353288	broad.mit.edu	37	17	38926577	38926577	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38956072	38956072	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54875810	54875810	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7016372	7016372	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129802476	129802476	+	Silent	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112463320	112463320	+	Splice_Site	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209803306	209803306	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71898227	71898227	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48956192	48956192	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX9	56956	broad.mit.edu	37	1	197887011	197887011	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN28B	389421	broad.mit.edu	37	6	105405174	105405174	+	Intron	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1A	4009	broad.mit.edu	37	1	165218775	165218775	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100101938	100101938	broad.mit.edu	37	13	19878753	19878753	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148012892	148012892	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285401	285401	broad.mit.edu	37	3	62970905	62970905	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC349114	349114	broad.mit.edu	37	7	39793955	39793955	+	Intron	SNP	C	T	T	rs112376211	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC643955	643955	broad.mit.edu	37	7	62752740	62752740	+	3'UTR	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62800583	62800583	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11922254	11922254	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRMP	4033	broad.mit.edu	37	12	25248781	25248781	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141027875	141027875	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170042168	170042168	+	Silent	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137259	40137259	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137872	40137872	+	5'UTR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52883222	52883222	+	Intron	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40714830	40714830	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM1	347730	broad.mit.edu	37	2	80529899	80529899	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77626153	77626153	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY6D	8581	broad.mit.edu	37	8	143867036	143867036	+	Silent	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MADD	8567	broad.mit.edu	37	11	47345285	47345285	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140994078	140994078	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140994373	140994373	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC2	51438	broad.mit.edu	37	X	141290890	141290891	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAOA	4128	broad.mit.edu	37	X	43590552	43590552	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1A	4130	broad.mit.edu	37	15	43821529	43821529	+	Silent	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K13	9175	broad.mit.edu	37	3	185197888	185197888	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K8	1326	broad.mit.edu	37	10	30728325	30728325	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAT2B	27430	broad.mit.edu	37	5	162930318	162930318	+	5'Flank	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MB	4151	broad.mit.edu	37	22	36013168	36013168	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC2R	4158	broad.mit.edu	37	18	13885541	13885541	+	5'UTR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47530405	47530405	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47849045	47849045	+	Intron	SNP	G	A	A	rs148950801	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42172023	42172023	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MID1	4281	broad.mit.edu	37	X	10535314	10535314	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR622	693207	broad.mit.edu	37	13	90882921	90882921	+	5'Flank	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151971648	151971648	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOSPD2	158747	broad.mit.edu	37	X	14936918	14936918	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A6A	64231	broad.mit.edu	37	11	59939618	59939618	+	3'UTR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH6	2956	broad.mit.edu	37	2	48030811	48030811	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSI1	4440	broad.mit.edu	37	12	120791215	120791215	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSI1	4440	broad.mit.edu	37	12	120791218	120791218	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSI1	4440	broad.mit.edu	37	12	120791548	120791548	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121530874	121530874	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR6	9107	broad.mit.edu	37	13	25840012	25840012	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTNR1A	4543	broad.mit.edu	37	4	187455200	187455200	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9071130	9071130	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYB	4602	broad.mit.edu	37	6	135511239	135511239	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCT1	80177	broad.mit.edu	37	6	153042834	153042834	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10398023	10398023	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10402375	10402375	+	Silent	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23884965	23884965	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST1	84148	broad.mit.edu	37	16	31131492	31131492	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST1	84148	broad.mit.edu	37	16	31131649	31131649	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NANP	140838	broad.mit.edu	37	20	25596690	25596690	+	Silent	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARS2	79731	broad.mit.edu	37	11	78177092	78177092	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78444689	78444689	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78583739	78583739	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145290712	145290712	+	5'Flank	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16894079	16894082	+	Intron	DEL	ACAG	-	-	rs71267862		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144169709	144169709	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133636225	133636225	+	Intron	SNP	A	G	G	rs60803517		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA6	23054	broad.mit.edu	37	20	33345447	33345447	+	Silent	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27297818	27297818	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC2	133308	broad.mit.edu	37	4	103987462	103987462	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52505684	52505684	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRX1	79671	broad.mit.edu	37	11	119054062	119054062	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NNT	23530	broad.mit.edu	37	5	43613236	43613236	+	Silent	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155776924	155776924	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36339163	36339163	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34867013	34867013	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP1	8204	broad.mit.edu	37	21	16340473	16340473	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50765733	50765733	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSF	4905	broad.mit.edu	37	17	44833115	44833115	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMCE2	286053	broad.mit.edu	37	8	126296135	126296135	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN3	63899	broad.mit.edu	37	3	93794789	93794789	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132180160	132180160	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUAK1	9891	broad.mit.edu	37	12	106480501	106480501	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP107	57122	broad.mit.edu	37	12	69096537	69096537	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP133	55746	broad.mit.edu	37	1	229631292	229631292	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37331769	37331769	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228444509	228444509	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGFOD1	55239	broad.mit.edu	37	16	56485540	56485540	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR12D2	26529	broad.mit.edu	37	6	29365302	29365302	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13A1	79290	broad.mit.edu	37	10	45799860	45799860	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1S1	219959	broad.mit.edu	37	11	57982229	57982229	+	Frame_Shift_Del	DEL	A	-	-	rs1966836	byFrequency;by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2D3	120775	broad.mit.edu	37	11	6943218	6943219	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248262962	248262962	+	Silent	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T34	127068	broad.mit.edu	37	1	248737278	248737278	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55135507	55135507	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A16	81327	broad.mit.edu	37	11	55110813	55110813	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20296219	20296219	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22344710	22344710	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AP2	338675	broad.mit.edu	37	11	56409469	56409469	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H1	26341	broad.mit.edu	37	3	97852218	97852218	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M3	219482	broad.mit.edu	37	11	56237921	56237921	+	Missense_Mutation	SNP	C	A	A	rs142752109		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T3	390154	broad.mit.edu	37	11	56019977	56019977	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C4	341418	broad.mit.edu	37	12	55945351	55945351	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B4	283162	broad.mit.edu	37	11	124294638	124294638	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC1L	4998	broad.mit.edu	37	1	52847601	52847601	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORM1	5004	broad.mit.edu	37	9	117092869	117092869	+	Intron	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL1A	114876	broad.mit.edu	37	18	21882941	21882942	+	Intron	INS	-	TG	TG	rs144360837	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTC	5009	broad.mit.edu	37	X	38271071	38271071	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC3	5042	broad.mit.edu	37	13	25671839	25671839	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM	5064	broad.mit.edu	37	19	734199	734199	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARM1	25849	broad.mit.edu	37	4	75939642	75939642	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASK	23178	broad.mit.edu	37	2	242046118	242046118	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX5	5079	broad.mit.edu	37	9	36966731	36966731	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX8	7849	broad.mit.edu	37	2	114002157	114002157	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55570302	55570302	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55582459	55582459	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55780296	55780296	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55943337	55943338	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB17	54661	broad.mit.edu	37	5	140537246	140537246	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCIF1	63935	broad.mit.edu	37	20	44567887	44567888	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165832098	165832098	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20769352	20769352	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE5A	8654	broad.mit.edu	37	4	120498966	120498966	+	Intron	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55127551	55127551	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41903696	41903696	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156874545	156874545	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57328638	57328638	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57347326	57347327	+	Intron	DNP	GG	AT	AT			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PELI1	57162	broad.mit.edu	37	2	64323337	64323337	+	Silent	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD2	267002	broad.mit.edu	37	1	249211295	249211295	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20	51230	broad.mit.edu	37	20	34459638	34459638	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF3	23469	broad.mit.edu	37	6	64422420	64422420	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGO	84720	broad.mit.edu	37	9	35094351	35094351	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178937678	178937678	+	Intron	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209204902	209204902	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130855618	130855618	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110394800	110394800	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110466858	110466858	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA1A	51365	broad.mit.edu	37	3	119334786	119334786	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8862173	8862173	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB3	5331	broad.mit.edu	37	11	64029061	64029061	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLL	27343	broad.mit.edu	37	10	103343395	103343395	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLN	353497	broad.mit.edu	37	4	2230953	2230953	+	Silent	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53103754	53103754	+	Silent	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POMGNT1	55624	broad.mit.edu	37	1	46657877	46657877	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81719546	81719546	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3A	5506	broad.mit.edu	37	7	113518398	113518398	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3CC	5533	broad.mit.edu	37	8	22350516	22350516	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM1	639	broad.mit.edu	37	6	106555120	106555120	+	Missense_Mutation	SNP	A	T	T	rs76571405		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23509379	23509379	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRELP	5549	broad.mit.edu	37	1	203452736	203452736	+	Missense_Mutation	SNP	G	A	A	rs56086342		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68950606	68950606	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69050646	69050646	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57255570	57255573	+	Intron	DEL	TATC	-	-	rs139708111		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43762248	43762248	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	8248266	8248266	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM1	9698	broad.mit.edu	37	1	31501754	31501754	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QKI	9444	broad.mit.edu	37	6	163956145	163956145	+	Silent	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDM1	23518	broad.mit.edu	37	2	136481642	136481642	+	Missense_Mutation	SNP	G	A	A	rs143951307		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220335661	220335661	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220357365	220357365	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP1	10635	broad.mit.edu	37	12	4654861	4654861	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG2	5897	broad.mit.edu	37	11	36614774	36614774	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALBP1	10928	broad.mit.edu	37	18	9517288	9517288	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP2C	57826	broad.mit.edu	37	X	131350977	131350977	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARS2	57038	broad.mit.edu	37	6	88240714	88240714	+	Intron	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASD2	23551	broad.mit.edu	37	22	35947517	35947517	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP4	115727	broad.mit.edu	37	19	38900555	38900555	+	3'UTR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAVER2	55225	broad.mit.edu	37	1	65243492	65243492	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBL1	5933	broad.mit.edu	37	20	35693826	35693826	+	Splice_Site	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH16	8608	broad.mit.edu	37	12	57379839	57379839	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79384478	79384478	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG4	83998	broad.mit.edu	37	1	120336709	120336709	+	3'UTR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103180650	103180650	+	Silent	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103322825	103322825	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RER1	11079	broad.mit.edu	37	1	2330789	2330789	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETN	56729	broad.mit.edu	37	19	7735319	7735327	+	3'UTR	DEL	GATGATGAT	-	-	rs112669651		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC2	5982	broad.mit.edu	37	7	73661077	73661077	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL1	23179	broad.mit.edu	37	1	183885736	183885736	+	Silent	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD3	653489	broad.mit.edu	37	2	107040987	107040987	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	131187568	131187568	+	Intron	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105105708	105105708	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLF	6018	broad.mit.edu	37	1	40703619	40703619	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124765507	124765507	+	Silent	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROD1	9991	broad.mit.edu	37	9	114986001	114986001	+	3'UTR	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR1	4919	broad.mit.edu	37	1	64381937	64381937	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117704427	117704427	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55533480	55533480	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL23	9349	broad.mit.edu	37	17	37010000	37010000	+	5'UTR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213375736	213375737	+	Intron	DEL	TT	-	-	rs66485731		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	92982976	92982976	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159493798	159493798	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33865619	33865619	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34112970	34112970	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A2	6273	broad.mit.edu	37	1	153533779	153533779	+	3'UTR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAAL1	113174	broad.mit.edu	37	11	18128286	18128286	+	5'Flank	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200137209	200137209	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78176737	78176737	+	Intron	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML1	6322	broad.mit.edu	37	X	17771464	17771464	+	Silent	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166897784	166897784	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166201109	166201109	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167262949	167262949	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16A	9919	broad.mit.edu	37	9	139353685	139353685	+	Silent	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3C	10512	broad.mit.edu	37	7	80447562	80447562	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMG2	6407	broad.mit.edu	37	20	43851066	43851066	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERINC5	256987	broad.mit.edu	37	5	79469105	79469105	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC4	399694	broad.mit.edu	37	15	49231519	49231519	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA9	729993	broad.mit.edu	37	16	13295854	13295854	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM4	57477	broad.mit.edu	37	X	50378521	50378521	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIAE	54414	broad.mit.edu	37	11	124524960	124524960	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52003577	52003577	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A3	10786	broad.mit.edu	37	6	25861921	25861921	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A1	6570	broad.mit.edu	37	8	20002997	20002997	+	3'UTR	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A2	25769	broad.mit.edu	37	9	19521004	19521004	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19665877	19665877	+	Missense_Mutation	SNP	G	A	A	rs75574349	byFrequency;by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128362981	128362981	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18250465	18250465	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162833373	162833373	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20676459	20676459	+	3'UTR	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A6	9057	broad.mit.edu	37	16	68321600	68321600	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21350115	21350115	+	Silent	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO3A1	28232	broad.mit.edu	37	15	92669539	92669539	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70743942	70743942	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLU7	10569	broad.mit.edu	37	5	159841162	159841162	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1B	27127	broad.mit.edu	37	22	45750875	45750875	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18840561	18840561	+	Intron	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAI2	6591	broad.mit.edu	37	8	49832983	49832983	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAR-I	100170222	broad.mit.edu	37	3	190594224	190594224	+	5'Flank	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPC	6631	broad.mit.edu	37	6	34725738	34725738	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB1	6641	broad.mit.edu	37	8	121768026	121768026	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX29	92017	broad.mit.edu	37	16	12371874	12371874	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOBP	55084	broad.mit.edu	37	6	107954957	107954957	+	Silent	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108439018	108439018	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123594355	123594355	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARC	6678	broad.mit.edu	37	5	151043764	151043764	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG11	80208	broad.mit.edu	37	15	44862813	44862813	+	Silent	SNP	C	T	T	rs150121550	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158585142	158585143	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158596968	158596968	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158648262	158648262	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41062057	41062057	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104031840	104031840	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104049007	104049007	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104049364	104049364	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136068096	136068096	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3A	3703	broad.mit.edu	37	11	125467027	125467027	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3B	201595	broad.mit.edu	37	3	31667629	31667629	+	Intron	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4065386	4065386	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMO1	7341	broad.mit.edu	37	2	203071900	203071900	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYPL2	284612	broad.mit.edu	37	1	110018304	110018304	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1L	256536	broad.mit.edu	37	10	132944790	132944790	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL6	27004	broad.mit.edu	37	14	96134711	96134711	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEC	7006	broad.mit.edu	37	4	48152982	48152982	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET2	54790	broad.mit.edu	37	4	106155397	106155397	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX13A	56157	broad.mit.edu	37	X	104463837	104463837	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56700442	56700442	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2D	83741	broad.mit.edu	37	6	50683242	50683242	+	Silent	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	71447172	71447172	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE2	7089	broad.mit.edu	37	19	3006032	3006032	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK1	9874	broad.mit.edu	37	2	171906414	171906414	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO2	127391	broad.mit.edu	37	1	40713903	40713903	+	Splice_Site	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED10P1	286102	broad.mit.edu	37	8	146220487	146220487	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM27	57393	broad.mit.edu	37	X	15657899	15657899	+	Intron	DEL	A	-	-			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19698655	19698655	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF11A	8792	broad.mit.edu	37	18	60036549	60036549	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175088090	175088090	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175360456	175360456	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42694513	42694514	+	Missense_Mutation	DNP	CC	GG	GG			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578413	7578413	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1457533	1457533	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRANK1	9881	broad.mit.edu	37	3	36898690	36898690	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREM1	54210	broad.mit.edu	37	6	41250157	41250157	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV2	51393	broad.mit.edu	37	17	16335351	16335351	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSNAXIP1	55815	broad.mit.edu	37	16	67860156	67860156	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43237441	43237441	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC27	55622	broad.mit.edu	37	2	32961852	32961852	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179439236	179439236	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179465807	179465807	+	Silent	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179530192	179530192	+	Intron	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179538410	179538411	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179600190	179600190	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179604128	179604128	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA1A	7846	broad.mit.edu	37	12	49578784	49578784	+	3'UTR	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP3	10426	broad.mit.edu	37	13	113208249	113208249	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXK	7294	broad.mit.edu	37	4	48075825	48075825	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC11	51061	broad.mit.edu	37	16	11829940	11829940	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37927918	37927918	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2H	7328	broad.mit.edu	37	7	129474736	129474736	+	3'UTR	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN1	51035	broad.mit.edu	37	11	62446114	62446114	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCK2	7371	broad.mit.edu	37	1	165860447	165860447	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCP2	7351	broad.mit.edu	37	11	73687826	73687826	+	Intron	DEL	C	-	-			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULBP3	79465	broad.mit.edu	37	6	150386651	150386651	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13B	10497	broad.mit.edu	37	9	35401853	35401853	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229773769	229773769	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216373437	216373437	+	Silent	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216419843	216419843	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP15	9958	broad.mit.edu	37	12	62783321	62783321	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	109531765	109531767	+	IGR	DEL	GTG	-	-	rs113671667		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	133293491	133293491	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	17619481	17619481	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	20840446	20840446	+	IGR	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	20950936	20950936	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36010679	36010679	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37691053	37691053	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42534843	42534843	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	64517876	64517876	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8338519	8338519	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	106408178	106408179	+	IGR	DNP	CC	AA	AA			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	118611796	118611796	+	IGR	DEL	G	-	-	rs139990841		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	13063187	13063188	+	IGR	INS	-	A	A	rs150887068	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	25652527	25652527	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	25669914	25669914	+	IGR	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29557158	29557158	+	IGR	SNP	A	T	T	rs113518273		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4351283	4351283	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49455527	49455527	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49893290	49893290	+	IGR	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50227679	50227679	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55588063	55588063	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56216131	56216131	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56216207	56216207	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6067141	6067141	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71448982	71448982	+	IGR	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	81512352	81512352	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	96479288	96479288	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	129501021	129501021	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	131629053	131629053	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	15248510	15248510	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34460492	34460492	+	IGR	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40904704	40904704	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40910431	40910431	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53063670	53063671	+	IGR	INS	-	A	A	rs143233248	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53143106	53143106	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55945993	55945993	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55961884	55961884	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61258	61258	+	IGR	SNP	C	T	T	rs140784290	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	64216006	64216006	+	IGR	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	39742576	39742576	+	IGR	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	77561450	77561451	+	IGR	DNP	CC	AA	AA			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	88544795	88544795	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147803	20147803	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28321699	28321699	+	IGR	SNP	C	A	A	rs115837710	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39197313	39197313	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20144840	20144840	+	IGR	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20426954	20426954	+	IGR	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	10934528	10934528	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	25442925	25442926	+	IGR	INS	-	ACTT	ACTT	rs141609375	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32425747	32425747	+	IGR	SNP	T	C	C	rs149524250	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32425795	32425795	+	IGR	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32850611	32850611	+	IGR	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33021071	33021071	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33040594	33040594	+	IGR	SNP	A	C	C	rs146119663	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33044238	33044238	+	IGR	SNP	G	A	A	rs147315625	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605440	33605440	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33946522	33946522	+	IGR	SNP	G	A	A	rs143197046	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33949170	33949170	+	IGR	SNP	T	C	C	rs77517905		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46824493	46824493	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	65223796	65223796	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	9770260	9770260	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21556496	21556496	+	IGR	SNP	A	C	C	rs138477476	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25283972	25283972	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25284173	25284173	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	45865357	45865357	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	67703420	67703420	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15169204	15169204	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	1695641	1695642	+	IGR	INS	-	TTG	TTG	rs145893464	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	19971016	19971016	+	IGR	SNP	C	A	A	rs150976305	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	21786	21786	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22314843	22314843	+	IGR	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22328620	22328620	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	30226296	30226296	+	IGR	SNP	G	A	A	rs117532716	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	5002884	5002884	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57817453	57817453	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	7392520	7392520	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32170934	32170934	+	IGR	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	39745655	39745655	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106434409	106434409	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148857541	148857541	+	IGR	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149064157	149064157	+	IGR	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	161528849	161528849	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	16316437	16316437	+	IGR	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189958891	189958891	+	IGR	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189959518	189959518	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191660711	191660711	+	IGR	DEL	A	-	-	rs68115728		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	29814780	29814780	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	825875	825875	+	IGR	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	16755555	16755555	+	IGR	SNP	A	G	G	rs56967030		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	22512725	22512725	+	IGR	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	25099176	25099177	+	IGR	INS	-	CACT	CACT	rs150656748	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	25741828	25741828	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29597494	29597494	+	IGR	SNP	T	C	C	rs78914649	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	39422704	39422704	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10450632	10450632	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10715819	10715819	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10872451	10872451	+	IGR	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11122231	11122231	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24474673	24474673	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	25237063	25237063	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9857087	9857087	+	IGR	SNP	G	T	T	rs28688421		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132763980	132763980	+	IGR	SNP	C	G	G	rs139911495	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132845564	132845564	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	137087217	137087217	+	IGR	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	138808258	138808258	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	199036843	199036843	+	IGR	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	200972250	200972250	+	IGR	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	22973651	22973651	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	234512471	234512471	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	33862071	33862071	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	36028313	36028313	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49510142	49510142	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58479730	58479730	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	67849050	67849050	+	IGR	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	71956014	71956014	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	73570528	73570528	+	IGR	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	79326690	79326690	+	IGR	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91658477	91658477	+	IGR	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91787900	91787900	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91795504	91795504	+	IGR	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91933143	91933143	+	IGR	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91936095	91936095	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117482458	117482458	+	IGR	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137315213	137315213	+	IGR	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163719466	163719467	+	IGR	DNP	CC	AA	AA			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	165766677	165766677	+	IGR	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	191572438	191572438	+	IGR	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	34540728	34540728	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	67094956	67094956	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75262440	75262440	+	IGR	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75896531	75896531	+	IGR	DEL	C	-	-			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116965125	116965125	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139544827	139544827	+	IGR	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	174340922	174340922	+	IGR	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190264042	190264042	+	IGR	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190650657	190650657	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49581935	49581935	+	IGR	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	53424341	53424341	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63683911	63683911	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	74508018	74508018	+	IGR	SNP	C	G	G	rs78065500	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	135109980	135109980	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	163105541	163105541	+	IGR	SNP	G	T	T	rs139903500	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24849441	24849442	+	IGR	INS	-	T	T	rs144274042	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	31053661	31053661	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	66898067	66898067	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	88550628	88550628	+	IGR	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104049028	104049028	+	IGR	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104467115	104467115	+	IGR	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	167315555	167315555	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27980016	27980016	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29228332	29228332	+	IGR	DEL	C	-	-	rs35631956		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	39967744	39967744	+	IGR	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57975042	57975042	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57981090	57981090	+	IGR	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58582319	58582320	+	IGR	DNP	GG	TC	TC			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63939860	63939860	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80775006	80775006	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87750317	87750318	+	IGR	INS	-	A	A	rs139649044	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	119139889	119139889	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	20984662	20984662	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	21260861	21260861	+	IGR	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	47103493	47103493	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62507617	62507617	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62507620	62507620	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	68721822	68721822	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	76414983	76414983	+	IGR	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	108852305	108852305	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	109585049	109585049	+	IGR	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132591124	132591124	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	31077905	31077905	+	IGR	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73142263	73142264	+	IGR	DNP	CC	AA	AA			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	91449167	91449167	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	9349101	9349101	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	123005296	123005296	+	IGR	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30559308	30559308	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66481635	66481635	+	IGR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68425460	68425460	+	IGR	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68454047	68454047	+	IGR	SNP	G	A	A	rs145428667	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68483992	68483992	+	IGR	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78041105	78041106	+	IGR	INS	-	TC	TC	rs142286045	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	95680081	95680081	+	IGR	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106765714	106765714	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134814698	134814698	+	IGR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135026436	135026436	+	IGR	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141260808	141260808	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25212755	25212755	+	IGR	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26179897	26179897	+	IGR	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37401912	37401912	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52635593	52635593	+	IGR	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	61999573	61999573	+	IGR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	6588110	6588110	+	IGR	SNP	T	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79817193	79817193	+	IGR	SNP	T	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	87351900	87351900	+	IGR	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59007919	59007919	+	IGR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL1	51442	broad.mit.edu	37	X	135631059	135631059	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62212148	62212148	+	Intron	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTA1	51534	broad.mit.edu	37	6	142468415	142468415	+	5'UTR	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR72	256764	broad.mit.edu	37	15	53889379	53889379	+	Silent	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR76	79968	broad.mit.edu	37	15	44158515	44158515	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54605764	54605764	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73070963	73070963	+	RNA	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO5	57510	broad.mit.edu	37	6	43507196	43507196	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YLPM1	56252	broad.mit.edu	37	14	75276211	75276211	+	Silent	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YTHDF3	253943	broad.mit.edu	37	8	64098705	64098705	+	Splice_Site	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB3	79842	broad.mit.edu	37	11	62521549	62521549	+	5'UTR	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77690536	77690536	+	Silent	SNP	G	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77767647	77767647	+	Silent	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC3	7547	broad.mit.edu	37	X	136652166	136652166	+	Silent	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF117	51351	broad.mit.edu	37	7	64439925	64439925	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF132	7691	broad.mit.edu	37	19	58948146	58948146	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF140	7699	broad.mit.edu	37	12	133683010	133683010	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF181	339318	broad.mit.edu	37	19	35231858	35231858	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF184	7738	broad.mit.edu	37	6	27419946	27419946	+	Silent	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF204P	7754	broad.mit.edu	37	6	27326175	27326175	+	3'UTR	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF514	84874	broad.mit.edu	37	2	95815962	95815962	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF528	84436	broad.mit.edu	37	19	52909317	52909317	+	Intron	SNP	T	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF582	147948	broad.mit.edu	37	19	56895314	56895314	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF670	93474	broad.mit.edu	37	1	247200850	247200850	+	Silent	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF738	148203	broad.mit.edu	37	19	21567007	21567007	+	3'UTR	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780B	163131	broad.mit.edu	37	19	40553238	40553238	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF808	388558	broad.mit.edu	37	19	53058234	53058234	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZWINT	11130	broad.mit.edu	37	10	58119319	58119319	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30930622	30930622	+	RNA	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	31128289	31128289	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31288449	31288449	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22040506	22040506	+	5'Flank	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	42002816	42002816	+	5'Flank	SNP	A	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10455084	10455084	+	Intron	SNP	G	A	A	rs139533669	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90049910	90049910	+	Intron	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	159820152	159820152	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	46833679	46833679	+	Intron	SNP	G	A	A	rs142926197	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14660648	14660648	+	Intron	SNP	A	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	178427026	178427026	+	Intron	SNP	A	C	C			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190846750	190846750	+	Intron	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	17868758	17868758	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	126964984	126964984	+	Intron	SNP	G	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	127004165	127004165	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142099995	142099995	+	Intron	SNP	C	G	G			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38380682	38380682	+	5'Flank	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38406571	38406571	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66460038	66460038	+	5'Flank	SNP	T	A	A	rs139479156	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66463275	66463275	+	Intron	SNP	G	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66463599	66463599	+	Intron	SNP	G	A	A	rs149401867	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
