Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ARHGEF10L	55160	broad.mit.edu	36	1	17834064	17834064	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	17834064	17834064	ARHGEF10L	1	C	C	T	27
MACF1	23499	broad.mit.edu	36	1	39599810	39599810	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	39599810	39599810	MACF1	1	A	A	G	14
DAB1	1600	broad.mit.edu	36	1	57253287	57253287	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	57253287	57253287	DAB1	1	G	G	T	43
CEPT1	10390	broad.mit.edu	36	1	111505352	111505352	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	111505352	111505352	CEPT1	1	T	T	C	52
TBX15	6913	broad.mit.edu	36	1	119228927	119228927	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	119228927	119228927	TBX15	1	T	T	A	49
ADCY10	55811	broad.mit.edu	36	1	166114492	166114492	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	166114492	166114492	ADCY10	1	C	C	A	21
PPP1R12B	4660	broad.mit.edu	36	1	200652587	200652587	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	200652587	200652587	PPP1R12B	1	G	G	C	33
GFRA1	2674	broad.mit.edu	36	10	117846194	117846194	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	117846194	117846194	GFRA1	10	T	T	A	60
OR5M11	219487	broad.mit.edu	36	11	56067236	56067236	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56067236	56067236	OR5M11	11	G	G	C	33
NRXN2	9379	broad.mit.edu	36	11	64184880	64184880	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	64184880	64184880	NRXN2	11	C	C	A	22
DKFZp761E198	91056	broad.mit.edu	36	11	65302963	65302963	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	65302963	65302963	DKFZp761E198	11	A	A	C	6
RAB1B	81876	broad.mit.edu	36	11	65800133	65800133	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	65800133	65800133	RAB1B	11	G	G	A	38
NTF3	4908	broad.mit.edu	36	12	5474014	5474014	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5474014	5474014	NTF3	12	G	G	C	43
CUX2	23316	broad.mit.edu	36	12	110269817	110269817	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	110269817	110269817	CUX2	12	C	C	T	22
FLT3	2322	broad.mit.edu	36	13	27507758	27507758	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27507758	27507758	FLT3	13	C	C	G	20
NID2	22795	broad.mit.edu	36	14	51548066	51548066	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	51548066	51548066	NID2	14	G	G	C	34
AQR	9716	broad.mit.edu	36	15	33018270	33018270	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	33018270	33018270	AQR	15	G	G	A	41
ZFP106	64397	broad.mit.edu	36	15	40531348	40531348	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	40531348	40531348	ZFP106	15	C	C	A	32
C15orf40	123207	broad.mit.edu	36	15	81471355	81471355	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	81471355	81471355	C15orf40	15	C	C	T	26
ZNF629	23361	broad.mit.edu	36	16	30702244	30702244	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30702244	30702244	ZNF629	16	G	G	T	44
AP2B1	163	broad.mit.edu	36	17	31068453	31068453	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31068453	31068453	AP2B1	17	G	G	C	40
NOG	9241	broad.mit.edu	36	17	52027168	52027168	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	52027168	52027168	NOG	17	C	C	T	21
HSF5	124535	broad.mit.edu	36	17	53912582	53912582	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	53912582	53912582	HSF5	17	C	C	G	20
SEPT4	5414	broad.mit.edu	36	17	53959317	53959317	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	53959317	53959317	SEPT4	17	T	T	G	59
KIAA0195	9772	broad.mit.edu	36	17	71002622	71002622	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	71002622	71002622	KIAA0195	17	C	C	G	22
MRPL38	64978	broad.mit.edu	36	17	71408918	71408918	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	71408918	71408918	MRPL38	17	G	G	A	46
ACTG1	71	broad.mit.edu	36	17	77093073	77093073	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	77093073	77093073	ACTG1	17	G	G	C	35
DSG4	147409	broad.mit.edu	36	18	27225093	27225093	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27225093	27225093	DSG4	18	G	G	A	33
PEX11G	92960	broad.mit.edu	36	19	7456868	7456868	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	7456868	7456868	PEX11G	19	C	C	G	21
MUC16	94025	broad.mit.edu	36	19	8921436	8921436	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	8921436	8921436	MUC16	19	G	G	C	44
ZNF14	7561	broad.mit.edu	36	19	19683497	19683497	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	19683497	19683497	ZNF14	19	A	A	T	5
NLRP4	147945	broad.mit.edu	36	19	61062166	61062166	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	61062166	61062166	NLRP4	19	A	A	G	6
FER1L5	90342	broad.mit.edu	36	2	96733061	96733061	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	96733061	96733061	FER1L5	2	G	G	A	39
IL1F7	27178	broad.mit.edu	36	2	113392753	113392753	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	113392753	113392753	IL1F7	2	G	G	C	45
IL1RN	3557	broad.mit.edu	36	2	113605175	113605175	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	113605175	113605175	IL1RN	2	G	G	T	36
NCKAP5	344148	broad.mit.edu	36	2	133256692	133256692	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	133256692	133256692	NCKAP5	2	G	G	C	47
NEUROD1	4760	broad.mit.edu	36	2	182251348	182251348	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	182251348	182251348	NEUROD1	2	C	C	G	28
MC3R	4159	broad.mit.edu	36	20	54257958	54257958	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	54257958	54257958	MC3R	20	G	G	A	40
GNAT1	2779	broad.mit.edu	36	3	50205602	50205602	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	50205602	50205602	GNAT1	3	A	A	C	5
ZNF654	55279	broad.mit.edu	36	3	88271555	88271555	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	88271555	88271555	ZNF654	3	T	T	C	53
CCDC80	151887	broad.mit.edu	36	3	113840321	113840321	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	113840321	113840321	CCDC80	3	T	T	A	58
GSK3B	2932	broad.mit.edu	36	3	121148808	121148808	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	121148808	121148808	GSK3B	3	C	C	G	32
KBTBD12	166348	broad.mit.edu	36	3	129125457	129125457	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	129125457	129125457	KBTBD12	3	G	G	C	33
C3orf25	90288	broad.mit.edu	36	3	130603325	130603325	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	130603325	130603325	C3orf25	3	G	G	A	39
KLHL6	89857	broad.mit.edu	36	3	184700167	184700168	+	Missense_Mutation	DNP	GC	GC	AA	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	184700167	184700168	KLHL6	3	GC	GC	AA	42
LRRC15	131578	broad.mit.edu	36	3	195561776	195561776	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	195561776	195561776	LRRC15	3	A	A	G	12
SNCA	6622	broad.mit.edu	36	4	90975785	90975785	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	90975785	90975785	SNCA	4	A	A	T	7
FBXW7	55294	broad.mit.edu	36	4	153463530	153463530	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	153463530	153463530	FBXW7	4	C	C	T	29
PDZD2	23037	broad.mit.edu	36	5	32096873	32096873	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	32096873	32096873	PDZD2	5	A	A	T	12
RASA1	5921	broad.mit.edu	36	5	86708052	86708052	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	86708052	86708052	RASA1	5	G	G	T	35
KCTD16	57528	broad.mit.edu	36	5	143567042	143567042	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	143567042	143567042	KCTD16	5	G	G	A	39
DSP	1832	broad.mit.edu	36	6	7520670	7520670	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	7520670	7520670	DSP	6	C	C	T	29
SCAND3	114821	broad.mit.edu	36	6	28649330	28649330	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	28649330	28649330	SCAND3	6	T	T	A	64
MRPS18B	28973	broad.mit.edu	36	6	30700663	30700663	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30700663	30700663	MRPS18B	6	G	G	A	39
TIAM2	26230	broad.mit.edu	36	6	155492947	155492947	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	155492947	155492947	TIAM2	6	C	C	T	23
IQCE	23288	broad.mit.edu	36	7	2596247	2596247	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2596247	2596247	IQCE	7	G	G	A	41
ACTR3B	57180	broad.mit.edu	36	7	152182520	152182520	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	152182520	152182520	ACTR3B	7	G	G	T	36
GPR124	25960	broad.mit.edu	36	8	37791599	37791599	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	37791599	37791599	GPR124	8	G	G	T	42
TSNARE1	203062	broad.mit.edu	36	8	143411044	143411044	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	143411044	143411044	TSNARE1	8	G	G	A	40
SMC2	10592	broad.mit.edu	36	9	105898255	105898255	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	105898255	105898255	SMC2	9	G	G	A	43
NBPF10	100132406	broad.mit.edu	36	1	144073456	144073457	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Ins	INS	144073456	144073457	NBPF10	1	-	C	-	56
YOD1	55432	broad.mit.edu	36	1	205289356	205289364	+	In_Frame_Del	DEL	TCGATATCT	-	TCGATATCT	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	205289356	205289364	YOD1	1	TCGATATCT	-	TCGATATCT	50
TP53	7157	broad.mit.edu	36	17	7520260	7520261	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Ins	INS	7520260	7520261	TP53	17	-	C	-	62
AKAP10	11216	broad.mit.edu	36	17	19801981	19801982	+	Frame_Shift_Ins	INS	-	T	-	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Ins	INS	19801981	19801982	AKAP10	17	-	T	-	48
ANKRD7	56311	broad.mit.edu	36	7	117652161	117652167	+	Frame_Shift_Del	DEL	CCCGCAG	-	CCCGCAG	novel	Unknown	TCGA-25-2391-01	TCGA-25-2391-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	117652161	117652167	ANKRD7	7	CCCGCAG	-	CCCGCAG	18
