Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA13	154664	broad.mit.edu	37	7	48375247	48375247	+	Intron	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66992245	66992245	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20685588	20685589	+	5'Flank	DEL	AC	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20698196	20698196	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC10	89845	broad.mit.edu	37	6	43400557	43400557	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC10	89845	broad.mit.edu	37	6	43416590	43416590	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17438419	17438419	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119028922	119028922	+	Intron	SNP	C	T	T	rs145297167	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179076967	179076967	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179079508	179079508	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD11	84129	broad.mit.edu	37	3	132295782	132295782	+	Intron	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89391294	89391294	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAP1	9744	broad.mit.edu	37	17	7240033	7240033	+	5'UTR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31352471	31352471	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACP6	51205	broad.mit.edu	37	1	147121847	147121847	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTC1	70	broad.mit.edu	37	15	35085394	35085394	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236882306	236882306	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM32	203102	broad.mit.edu	37	8	39027483	39027483	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106877667	106877667	+	RNA	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107078607	107078607	+	RNA	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33576861	33576861	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28212677	28212677	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43895977	43895977	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43944689	43944690	+	Intron	DNP	CC	AA	AA			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28302275	28302275	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28304454	28304454	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84651595	84651595	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131795974	131795974	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131897086	131897086	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD3	120	broad.mit.edu	37	10	111872586	111872586	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD3	120	broad.mit.edu	37	10	111891989	111891989	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100203767	100203767	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L2	84632	broad.mit.edu	37	10	116100464	116100464	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFP	174	broad.mit.edu	37	4	74313324	74313324	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK2	204	broad.mit.edu	37	1	33478994	33478994	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP11	11215	broad.mit.edu	37	13	42891710	42891710	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP12	9590	broad.mit.edu	37	6	151646936	151646936	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	85958713	85958713	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR7A3	22977	broad.mit.edu	37	1	19610596	19610596	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	30143102	30143102	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73678333	73678333	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT4	51378	broad.mit.edu	37	20	870752	870752	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41552150	41552150	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114158753	114158754	+	Splice_Site	DNP	AG	TA	TA			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114276963	114276963	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37430752	37430752	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD42	338699	broad.mit.edu	37	11	82924484	82924484	+	Intron	SNP	T	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD42	338699	broad.mit.edu	37	11	82924490	82924490	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD44	91526	broad.mit.edu	37	2	197873555	197873555	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANLN	54443	broad.mit.edu	37	7	36462361	36462361	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5722051	5722051	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5963404	5963404	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA3	306	broad.mit.edu	37	4	79503474	79503474	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83328191	83328191	+	3'UTR	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83349659	83349659	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APAF1	317	broad.mit.edu	37	12	99042113	99042113	+	5'UTR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APCDD1L	164284	broad.mit.edu	37	20	57045641	57045641	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21224784	21224784	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21256097	21256097	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOE	348	broad.mit.edu	37	19	45409802	45409802	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33386938	33386938	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36069945	36069945	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141051889	141051889	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF1	10565	broad.mit.edu	37	8	68208800	68208800	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP10	79658	broad.mit.edu	37	4	148876486	148876486	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP12	94134	broad.mit.edu	37	10	32197269	32197269	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128839021	128839021	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32562466	32562466	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27106171	27106171	+	Nonsense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1B	57492	broad.mit.edu	37	6	157192628	157192628	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23257283	23257283	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRDC4	91947	broad.mit.edu	37	15	98512352	98512352	+	Splice_Site	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP2	8853	broad.mit.edu	37	2	9525405	9525405	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62595152	62595152	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176927478	176927478	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31325156	31325156	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF7IP	55729	broad.mit.edu	37	12	14610120	14610120	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160076224	160076224	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25264583	25264583	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A3	79572	broad.mit.edu	37	3	194169249	194169250	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160099236	160099236	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160100252	160100252	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B3	483	broad.mit.edu	37	3	141632604	141632604	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10428274	10428274	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10625926	10625926	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0E1	8992	broad.mit.edu	37	5	172410842	172410842	+	5'UTR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76875838	76875838	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN2L	11273	broad.mit.edu	37	16	28844674	28844674	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GNT5	84002	broad.mit.edu	37	3	182988136	182988136	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11049711	11049711	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANK1	55024	broad.mit.edu	37	4	102751288	102751288	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L1	84726	broad.mit.edu	37	9	134349850	134349851	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	59161869	59161869	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCO2	83875	broad.mit.edu	37	11	112046197	112046197	+	5'Flank	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND6	221336	broad.mit.edu	37	6	56857168	56857168	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32661279	32661279	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP4	652	broad.mit.edu	37	14	54417449	54417449	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43279799	43279799	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD4	23476	broad.mit.edu	37	19	15365073	15365073	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108042929	108042929	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf4	57102	broad.mit.edu	37	12	4626138	4626138	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112740083	112740083	+	Intron	DEL	T	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112744003	112744003	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	81371128	81371128	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf177	283598	broad.mit.edu	37	14	99182659	99182659	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf177	283598	broad.mit.edu	37	14	99182700	99182700	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf37	145407	broad.mit.edu	37	14	58471400	58471400	+	3'UTR	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf26	161502	broad.mit.edu	37	15	81427722	81427722	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf81	23587	broad.mit.edu	37	17	7160226	7160226	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf22	79863	broad.mit.edu	37	18	77798620	77798620	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf62	284274	broad.mit.edu	37	18	73139584	73139584	+	5'UTR	SNP	T	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51770634	51770634	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF9B	387911	broad.mit.edu	37	13	24470882	24470882	+	Intron	SNP	C	T	T	rs113156509		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf105	92346	broad.mit.edu	37	1	172425689	172425689	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179452361	179452361	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf14	81626	broad.mit.edu	37	1	182873578	182873578	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf156	92342	broad.mit.edu	37	1	169762027	169762027	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf191	149934	broad.mit.edu	37	20	26084304	26084304	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf27B	408029	broad.mit.edu	37	2	132558558	132558558	+	5'UTR	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf77	129881	broad.mit.edu	37	2	170518803	170518803	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf78	388960	broad.mit.edu	37	2	74041415	74041416	+	Intron	DEL	TG	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf20	84077	broad.mit.edu	37	3	14731398	14731398	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf26	152816	broad.mit.edu	37	4	76489223	76489223	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf40	401137	broad.mit.edu	37	4	71024016	71024016	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf41	60684	broad.mit.edu	37	4	184585241	184585241	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf25	79020	broad.mit.edu	37	7	42971661	42971661	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf84	157869	broad.mit.edu	37	8	73993266	73993266	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf102	375748	broad.mit.edu	37	9	98678647	98678647	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf79	286234	broad.mit.edu	37	9	90501607	90501607	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181684527	181684527	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181700229	181700229	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201054194	201054194	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81964549	81964549	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1953620	1953620	+	Silent	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159163301	159163301	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAGE1	285782	broad.mit.edu	37	6	7355286	7355286	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCA	796	broad.mit.edu	37	11	14991403	14991403	+	Intron	SNP	T	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134626056	134626056	+	Intron	SNP	T	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2A	815	broad.mit.edu	37	5	149624787	149624787	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44148593	44148593	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPSL	133690	broad.mit.edu	37	5	35910651	35910651	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2976689	2976689	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP5	838	broad.mit.edu	37	11	104869518	104869518	+	Intron	SNP	T	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASS4	57091	broad.mit.edu	37	20	55012236	55012236	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASZ1	54897	broad.mit.edu	37	1	10725565	10725565	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBX2	84733	broad.mit.edu	37	17	77757733	77757733	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1B	200014	broad.mit.edu	37	1	52821917	52821917	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC144C	348254	broad.mit.edu	37	17	20279666	20279666	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC63	160762	broad.mit.edu	37	12	111321993	111321993	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC68	80323	broad.mit.edu	37	18	52602212	52602212	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC99	54908	broad.mit.edu	37	5	169023609	169023609	+	Silent	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKAR	886	broad.mit.edu	37	4	26487314	26487314	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNL2	81669	broad.mit.edu	37	1	1326279	1326279	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD177	57126	broad.mit.edu	37	19	43866219	43866219	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158301087	158301087	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158146919	158146919	+	5'Flank	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14B	8555	broad.mit.edu	37	9	99285924	99285924	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14C	168448	broad.mit.edu	37	7	48965406	48965406	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPB	9578	broad.mit.edu	37	14	103508273	103508273	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59195151	59195151	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73544838	73544838	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73550900	73550900	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25562988	25562988	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61687618	61687618	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP55	55165	broad.mit.edu	37	10	95262859	95262859	+	Intron	DEL	T	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB5	93659	broad.mit.edu	37	19	49547415	49547415	+	5'UTR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50824162	50824162	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50828667	50828667	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50870742	50870742	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53260431	53260431	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	403585	403585	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	433422	433422	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN2	1124	broad.mit.edu	37	7	29252188	29252188	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHORDC1	26973	broad.mit.edu	37	11	89947211	89947211	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB4	130106	broad.mit.edu	37	2	26805863	26805863	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP4	10970	broad.mit.edu	37	12	106633077	106633077	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN8	9073	broad.mit.edu	37	21	31588059	31588059	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDND1	56650	broad.mit.edu	37	3	98243987	98243987	+	5'Flank	SNP	G	A	A	rs144252366	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC16A	23274	broad.mit.edu	37	16	11096921	11096921	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC16A	23274	broad.mit.edu	37	16	11219945	11219945	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLLU1OS	574016	broad.mit.edu	37	12	92814731	92814731	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLN3	1201	broad.mit.edu	37	16	28498827	28498827	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLNK	116449	broad.mit.edu	37	4	10566369	10566369	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPTM1	1209	broad.mit.edu	37	19	45495879	45495879	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMA1	1215	broad.mit.edu	37	14	24974789	24974789	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87738759	87738759	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNPY3	10695	broad.mit.edu	37	6	42902106	42902106	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17298192	17298192	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125262190	125262190	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBL	23242	broad.mit.edu	37	7	51111052	51111052	+	Intron	SNP	G	A	A	rs148455307	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103354560	103354560	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103471410	103471410	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70850885	70850885	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94029479	94029479	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	55922481	55922481	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139869406	139869406	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189872577	189872577	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A1	1291	broad.mit.edu	37	21	47422366	47422366	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPB1	1315	broad.mit.edu	37	11	14496111	14496111	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ4	51117	broad.mit.edu	37	9	131087468	131087468	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXCR1	53336	broad.mit.edu	37	X	88009116	88009117	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2775235	2775235	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREG2	200407	broad.mit.edu	37	2	101967438	101967438	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP2	7180	broad.mit.edu	37	6	49676823	49676823	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD2	83716	broad.mit.edu	37	16	84911138	84911138	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBA4	1413	broad.mit.edu	37	22	27019232	27019232	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37329915	37329915	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113392679	113392679	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN1S1	1446	broad.mit.edu	37	4	70804989	70804989	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRP2BP	57325	broad.mit.edu	37	20	18168205	18168205	+	3'UTR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRP3	8048	broad.mit.edu	37	11	19209935	19209935	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST7	8530	broad.mit.edu	37	20	24937902	24937902	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT47B1	643311	broad.mit.edu	37	X	120008777	120008777	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND1	1500	broad.mit.edu	37	11	57571072	57571072	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11098777	11098777	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS2	56474	broad.mit.edu	37	X	16709790	16709790	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43166498	43166498	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXXC1	30827	broad.mit.edu	37	18	47810186	47810186	+	Splice_Site	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC1	1538	broad.mit.edu	37	X	83129105	83129105	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11A1	1583	broad.mit.edu	37	15	74636355	74636355	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72255996	72255996	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAGLA	747	broad.mit.edu	37	11	61504654	61504654	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC2B	149069	broad.mit.edu	37	1	32678391	32678391	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155156960	155156960	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN2	10540	broad.mit.edu	37	12	57927805	57927806	+	Frame_Shift_Ins	INS	-	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D4	23142	broad.mit.edu	37	4	52743855	52743855	+	Intron	SNP	A	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDC	1644	broad.mit.edu	37	7	50563117	50563117	+	Splice_Site	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI1	414301	broad.mit.edu	37	11	103908205	103908205	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX41	51428	broad.mit.edu	37	5	176942556	176942556	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169195281	169195281	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140268664	140268664	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC6	64798	broad.mit.edu	37	8	120977678	120977678	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKD	8527	broad.mit.edu	37	2	234371403	234371403	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DICER1	23405	broad.mit.edu	37	14	95557026	95557026	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47978160	47978160	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISP1	84976	broad.mit.edu	37	1	223177391	223177391	+	Silent	SNP	G	A	A	rs138904556	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISP1	84976	broad.mit.edu	37	1	223177398	223177398	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLEC1	9940	broad.mit.edu	37	3	38104226	38104226	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3742422	3742422	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	4431041	4431041	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL2	23312	broad.mit.edu	37	15	51829946	51829946	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124297768	124297768	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21730602	21730602	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11522855	11522855	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB2	3300	broad.mit.edu	37	2	220150679	220150679	+	3'UTR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3B	1789	broad.mit.edu	37	20	31383385	31383385	+	Intron	SNP	C	T	T	rs111697392	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169135327	169135327	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169141245	169141245	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	64045726	64045726	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSTYK	25778	broad.mit.edu	37	1	205117251	205117251	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP21	63904	broad.mit.edu	37	X	44704038	44704038	+	3'UTR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95657413	95657413	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71801420	71801422	+	In_Frame_Del	DEL	CCG	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71871070	71871070	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137821252	137821252	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131671816	131671816	+	Silent	SNP	G	T	T	rs150383257		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2	1894	broad.mit.edu	37	3	172525464	172525464	+	Intron	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD2	255520	broad.mit.edu	37	4	141458778	141458778	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL3	83401	broad.mit.edu	37	10	103988352	103988352	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMID2	136227	broad.mit.edu	37	7	101196669	101196669	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML2	24139	broad.mit.edu	37	19	46116800	46116800	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120580440	120580440	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD1	953	broad.mit.edu	37	10	97518659	97518659	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89456501	89456501	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66217258	66217258	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66356125	66356125	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66439286	66439286	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX1	2052	broad.mit.edu	37	1	226016460	226016460	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8L3	79574	broad.mit.edu	37	1	110293498	110293498	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56270716	56270716	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC3	2071	broad.mit.edu	37	2	128028816	128028816	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103484058	103484058	+	Intron	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EREG	2069	broad.mit.edu	37	4	75248539	75248539	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRB	2103	broad.mit.edu	37	14	76964496	76964496	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216896519	216896519	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT1	23344	broad.mit.edu	37	12	56536322	56536322	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158529746	158529746	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETAA1	54465	broad.mit.edu	37	2	67630052	67630052	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133580492	133580492	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133580505	133580505	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66115312	66115313	+	Intron	DNP	GA	TT	TT			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11R	50848	broad.mit.edu	37	1	160971012	160971012	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11R	50848	broad.mit.edu	37	1	160971020	160971020	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6197479	6197479	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2	2147	broad.mit.edu	37	11	46760614	46760614	+	Silent	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169513566	169513566	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP3	2170	broad.mit.edu	37	1	31845872	31845872	+	5'UTR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM108C1	58489	broad.mit.edu	37	15	81042093	81042093	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123B	139285	broad.mit.edu	37	X	63411404	63411404	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139380052	139380052	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61011256	61011256	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM164A	51101	broad.mit.edu	37	8	79585913	79585913	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171B	165215	broad.mit.edu	37	2	187625877	187625877	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179B	23116	broad.mit.edu	37	14	45513851	45513851	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM181B	220382	broad.mit.edu	37	11	82444630	82444630	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10671622	10671622	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10672688	10672688	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10672706	10672706	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34148608	34148608	+	Silent	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B1	100130302	broad.mit.edu	37	X	24381889	24381889	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55B	120406	broad.mit.edu	37	11	114568908	114568908	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12232357	12232357	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM98C	147965	broad.mit.edu	37	19	38896205	38896205	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9A	171482	broad.mit.edu	37	X	8762960	8762960	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89849560	89849560	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45669020	45669020	+	Intron	SNP	T	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45669039	45669039	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163082062	163082062	+	Silent	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150885055	150885055	+	3'UTR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48796170	48796170	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48796175	48796175	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48888462	48888462	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127597560	127597560	+	Nonsense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8153084	8153084	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO11	80204	broad.mit.edu	37	2	48049351	48049351	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157771596	157771596	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157516811	157516811	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEM1A	55527	broad.mit.edu	37	19	4793326	4793326	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125015557	125015557	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD1	2245	broad.mit.edu	37	X	54476618	54476618	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF12	2257	broad.mit.edu	37	3	191861947	191861947	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF4	2249	broad.mit.edu	37	11	69588306	69588306	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIGN	55137	broad.mit.edu	37	2	164468190	164468190	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9L	360132	broad.mit.edu	37	7	55750531	55750531	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152329021	152329021	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152285860	152285860	+	Missense_Mutation	SNP	C	T	T	rs145828067		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240333666	240333666	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL2	114793	broad.mit.edu	37	2	153415439	153415439	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL3	91010	broad.mit.edu	37	12	50059435	50059435	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG2B	441581	broad.mit.edu	37	10	135440087	135440087	+	Nonsense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD2	143162	broad.mit.edu	37	10	49393636	49393636	+	Silent	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12724906	12724906	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12735148	12735148	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49190064	49190064	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ1	24140	broad.mit.edu	37	X	48340805	48340805	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	27184360	27184360	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRE	2564	broad.mit.edu	37	X	151128011	151128011	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27453301	27453301	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRP	2568	broad.mit.edu	37	5	170221314	170221314	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR2	2570	broad.mit.edu	37	6	90024816	90024816	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADL1	339896	broad.mit.edu	37	3	30880411	30880411	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAGE1	2543	broad.mit.edu	37	X	49370572	49370572	+	Intron	DEL	C	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120592987	120592987	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF2	2658	broad.mit.edu	37	10	48413794	48413794	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GKN1	56287	broad.mit.edu	37	2	69204685	69204685	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1	2720	broad.mit.edu	37	3	33110298	33110298	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42063147	42063147	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRX2	51022	broad.mit.edu	37	1	193066850	193066850	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D2	23127	broad.mit.edu	37	1	183942626	183942626	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNE	10020	broad.mit.edu	37	9	36246104	36246104	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL3L	54552	broad.mit.edu	37	X	54581130	54581130	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPAT	8443	broad.mit.edu	37	1	231403468	231403468	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPTAB	79158	broad.mit.edu	37	12	102183810	102183810	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133357507	133357507	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC4	2239	broad.mit.edu	37	X	132458605	132458605	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPN3	51184	broad.mit.edu	37	12	110903039	110903039	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPN3	51184	broad.mit.edu	37	12	110903041	110903041	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPNMB	10457	broad.mit.edu	37	7	23286420	23286420	+	Translation_Start_Site	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR111	222611	broad.mit.edu	37	6	47646939	47646939	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22422541	22422541	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100374910	100374910	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR26	2849	broad.mit.edu	37	10	125447575	125447575	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123489045	123489045	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153030061	153030061	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153085295	153085295	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94690220	94690220	+	Intron	DEL	C	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	30959772	30959772	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	10273964	10273964	+	Frame_Shift_Del	DEL	T	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9943739	9943739	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104448937	104448937	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88780774	88780774	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126173844	126173844	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2H1	2965	broad.mit.edu	37	11	18380137	18380137	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A3	2982	broad.mit.edu	37	4	156631723	156631723	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZF1	64412	broad.mit.edu	37	20	23345114	23345114	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H3F3C	440093	broad.mit.edu	37	12	31945092	31945093	+	Frame_Shift_Ins	INS	-	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45262807	45262807	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18988570	18988570	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197172028	197172028	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65415100	65415100	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AJ	8331	broad.mit.edu	37	6	27782248	27782248	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DPB1	3115	broad.mit.edu	37	6	33052719	33052719	+	Intron	SNP	G	C	C	rs116591494	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185987598	185987598	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186034405	186034405	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRPDL	9987	broad.mit.edu	37	4	83349089	83349089	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD11	3237	broad.mit.edu	37	2	176973838	176973838	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST1	9957	broad.mit.edu	37	4	11401489	11401489	+	Silent	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90B3P	343477	broad.mit.edu	37	1	92109180	92109180	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3A	3359	broad.mit.edu	37	11	113860094	113860094	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA2	27429	broad.mit.edu	37	2	74759976	74759976	+	Nonsense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYAL4	23553	broad.mit.edu	37	7	123509169	123509169	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI16	3428	broad.mit.edu	37	1	159021844	159021844	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI44	10561	broad.mit.edu	37	1	79126232	79126232	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT52	51098	broad.mit.edu	37	20	42275734	42275734	+	3'UTR	SNP	A	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17REL	400935	broad.mit.edu	37	22	50438923	50438923	+	Missense_Mutation	SNP	C	A	A	rs137904241		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29972872	29972872	+	Intron	SNP	T	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104651667	104651667	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RB	3560	broad.mit.edu	37	22	37532295	37532295	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35874746	35874746	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35876346	35876346	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILF2	3608	broad.mit.edu	37	1	153640105	153640105	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPA1	3612	broad.mit.edu	37	8	82588523	82588523	+	Intron	SNP	A	T	T	rs72422225		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100949732	100949732	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INCENP	3619	broad.mit.edu	37	11	61908956	61908956	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INCENP	3619	broad.mit.edu	37	11	61917509	61917509	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143129683	143129683	+	Splice_Site	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156812834	156812834	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS4L1	285905	broad.mit.edu	37	7	64643338	64643338	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO11	51194	broad.mit.edu	37	5	61781380	61781380	+	Intron	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO8	10526	broad.mit.edu	37	12	30837254	30837254	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO8	10526	broad.mit.edu	37	12	30843467	30843467	+	Silent	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75970540	75970540	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC2	23096	broad.mit.edu	37	X	53267522	53267522	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK3	11213	broad.mit.edu	37	12	66638684	66638684	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68596108	68596108	+	Splice_Site	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68650679	68650679	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31276830	31276830	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB3	3690	broad.mit.edu	37	17	45351647	45351647	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102367973	102367973	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52815945	52815945	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7659106	7659106	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156638359	156638359	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156670838	156670839	+	Intron	INS	-	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPKC	80271	broad.mit.edu	37	19	41231438	41231438	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26810547	26810547	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35124178	35124178	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH2	3757	broad.mit.edu	37	7	150644631	150644631	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215345403	215345403	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK9	51305	broad.mit.edu	37	8	140631035	140631035	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB3	27094	broad.mit.edu	37	3	178968384	178968384	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD16	57528	broad.mit.edu	37	5	143586157	143586157	+	Translation_Start_Site	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD3	51133	broad.mit.edu	37	1	215792515	215792515	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142639572	142639572	+	Silent	SNP	C	A	A	rs140592001	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142650727	142650727	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS3	10656	broad.mit.edu	37	8	136657432	136657432	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHNYN	23351	broad.mit.edu	37	14	24902242	24902242	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0125	9834	broad.mit.edu	37	14	106366957	106366957	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0196	9897	broad.mit.edu	37	8	126061389	126061389	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0391	9692	broad.mit.edu	37	14	35596743	35596743	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0776	23376	broad.mit.edu	37	6	96972164	96972164	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0947	23379	broad.mit.edu	37	5	5473809	5473809	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1370	56204	broad.mit.edu	37	15	52902041	52902041	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1377	57562	broad.mit.edu	37	11	101793446	101793446	+	Missense_Mutation	SNP	G	T	T	rs142032267		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95522735	95522735	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF16B	55614	broad.mit.edu	37	20	16348432	16348432	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	21016808	21016808	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF9	64147	broad.mit.edu	37	3	47281408	47281408	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF9	64147	broad.mit.edu	37	3	47286357	47286357	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55367481	55367481	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55378056	55378056	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DX1	90011	broad.mit.edu	37	19	55044331	55044331	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF4	9314	broad.mit.edu	37	9	110248160	110248160	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC7B	113730	broad.mit.edu	37	22	50987690	50987690	+	Silent	SNP	C	T	T	rs147168342	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL13	90293	broad.mit.edu	37	X	117044073	117044074	+	Intron	INS	-	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT1	3848	broad.mit.edu	37	12	53071365	53071365	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6A	3853	broad.mit.edu	37	12	52882037	52882037	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT9	3857	broad.mit.edu	37	17	39726321	39726321	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-9	386676	broad.mit.edu	37	21	46047579	46047579	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-3	337960	broad.mit.edu	37	21	31798334	31798334	+	5'Flank	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP20-1	337975	broad.mit.edu	37	21	31985998	31985999	+	5'Flank	DNP	CA	AT	AT			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-4	84616	broad.mit.edu	37	17	39316831	39316831	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KTN1	3895	broad.mit.edu	37	14	56122831	56122831	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54870273	54870273	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2C	353140	broad.mit.edu	37	1	152648744	152648744	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCORL	254251	broad.mit.edu	37	4	17964569	17964569	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB3	11155	broad.mit.edu	37	10	88478508	88478508	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRP2	79166	broad.mit.edu	37	19	55222203	55222203	+	RNA	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN54	132660	broad.mit.edu	37	4	83859512	83859512	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO3	55885	broad.mit.edu	37	12	16753563	16753563	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130776	100130776	broad.mit.edu	37	12	58121647	58121647	+	3'UTR	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284441	284441	broad.mit.edu	37	19	20370088	20370088	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285401	285401	broad.mit.edu	37	3	63082336	63082336	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49830150	49830150	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442459	442459	broad.mit.edu	37	X	98975087	98975087	+	RNA	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22550673	22550673	+	RNA	SNP	A	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151223840	151223840	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40360626	40360626	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40399650	40399650	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141115771	141115771	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141116451	141116451	+	Silent	SNP	C	T	T	rs138052993	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141143630	141143630	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC23	10233	broad.mit.edu	37	12	7023108	7023108	+	3'UTR	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A3	374819	broad.mit.edu	37	17	62856639	62856639	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC40	55631	broad.mit.edu	37	1	70652948	70652948	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC49	54839	broad.mit.edu	37	15	71302062	71302062	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRFIP1	9208	broad.mit.edu	37	2	238656997	238656997	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85434223	85434223	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85546113	85546113	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101597252	101597252	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM3	347731	broad.mit.edu	37	10	68857382	68857382	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM14A	26065	broad.mit.edu	37	19	34710724	34710724	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235909776	235909776	+	Missense_Mutation	SNP	C	T	T	rs147536126	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB2	4113	broad.mit.edu	37	X	30237624	30237624	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEE2	139599	broad.mit.edu	37	X	75003586	75003586	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65425416	65425416	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	78131003	78131003	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML2	84441	broad.mit.edu	37	11	95825768	95825768	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1B	4131	broad.mit.edu	37	5	71496325	71496325	+	Intron	SNP	A	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1LC3B	81631	broad.mit.edu	37	16	87432486	87432486	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1LC3B	81631	broad.mit.edu	37	16	87432488	87432488	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K1	5604	broad.mit.edu	37	15	66727455	66727455	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K15	389840	broad.mit.edu	37	X	19443781	19443781	+	5'UTR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKBP1	23005	broad.mit.edu	37	15	42092080	42092080	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165109717	165109717	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119699850	119699850	+	5'UTR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN2	255231	broad.mit.edu	37	1	85418191	85418191	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED14	9282	broad.mit.edu	37	X	40573738	40573738	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126705572	126705572	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126705576	126705576	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEOX2	4223	broad.mit.edu	37	7	15652213	15652213	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METAP1	23173	broad.mit.edu	37	4	99960521	99960521	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD8	256471	broad.mit.edu	37	4	128863280	128863281	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1297	100302187	broad.mit.edu	37	13	54886163	54886163	+	RNA	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR509-3	100126337	broad.mit.edu	37	X	146341225	146341225	+	RNA	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR517C	574492	broad.mit.edu	37	19	54244639	54244639	+	RNA	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR592	693177	broad.mit.edu	37	7	126698172	126698172	+	RNA	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN1	23608	broad.mit.edu	37	7	140171821	140171821	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLKL	197259	broad.mit.edu	37	16	74708939	74708939	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49448739	49448739	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151919678	151919678	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168363034	168363034	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLX	6945	broad.mit.edu	37	17	40720591	40720592	+	Intron	INS	-	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP1	4312	broad.mit.edu	37	11	102666324	102666324	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90874611	90874611	+	3'UTR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX1	259249	broad.mit.edu	37	11	18956125	18956125	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS14	63931	broad.mit.edu	37	1	174987489	174987489	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A10	341116	broad.mit.edu	37	11	60558557	60558557	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A3	932	broad.mit.edu	37	11	59831813	59831813	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRB3	253827	broad.mit.edu	37	12	65857034	65857034	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFSD	64779	broad.mit.edu	37	16	86582165	86582165	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC13	56667	broad.mit.edu	37	3	124631832	124631832	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9020871	9020871	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9074611	9074611	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100682038	100682038	+	Silent	SNP	A	G	G	rs142442389	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC4	4585	broad.mit.edu	37	3	195516223	195516223	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1213224	1213224	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXD4	10608	broad.mit.edu	37	4	2254171	2254171	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3235270	3235270	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC2	4606	broad.mit.edu	37	19	50957609	50957609	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10257933	10257933	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10293753	10293753	+	3'UTR	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL4	4635	broad.mit.edu	37	17	45299121	45299121	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72197314	72197314	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	1998830	1998830	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69909858	69909858	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N6AMT1	29104	broad.mit.edu	37	21	30252218	30252218	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBN	4683	broad.mit.edu	37	8	90982638	90982638	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16891123	16891123	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF7	343505	broad.mit.edu	37	1	120381810	120381810	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF7	343505	broad.mit.edu	37	1	120381813	120381813	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144168526	144168526	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133541594	133541594	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA7	135112	broad.mit.edu	37	6	126210971	126210971	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD4L	23327	broad.mit.edu	37	18	56024480	56024480	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204915424	204915424	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFU1	27247	broad.mit.edu	37	2	69659083	69659084	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGDN	25983	broad.mit.edu	37	14	23938921	23938921	+	5'UTR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGDN	25983	broad.mit.edu	37	14	23938924	23938924	+	5'UTR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGLY1	55768	broad.mit.edu	37	3	25791364	25791364	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHS	4810	broad.mit.edu	37	X	17746185	17746185	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKG7	4818	broad.mit.edu	37	19	51875332	51875332	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN3	54413	broad.mit.edu	37	X	70375176	70375176	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN3	54413	broad.mit.edu	37	X	70375182	70375182	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN3	54413	broad.mit.edu	37	X	70375185	70375185	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLN	57486	broad.mit.edu	37	5	65029214	65029214	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54314478	54314478	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56421924	56421924	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247597423	247597423	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56392837	56392837	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56515551	56515551	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NODAL	4838	broad.mit.edu	37	10	72195389	72195389	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL8	55035	broad.mit.edu	37	9	95072852	95072852	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NONO	4841	broad.mit.edu	37	X	70518384	70518384	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP14	8602	broad.mit.edu	37	4	2954074	2954074	+	Silent	SNP	C	T	T	rs149472162	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69335109	69335109	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY2R	4887	broad.mit.edu	37	4	156135190	156135191	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1H2	7376	broad.mit.edu	37	19	50885781	50885781	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1H4	9971	broad.mit.edu	37	12	100926360	100926360	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1H4	9971	broad.mit.edu	37	12	100926373	100926373	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR6A1	2649	broad.mit.edu	37	9	127300525	127300525	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84498238	84498238	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSFL1C	55968	broad.mit.edu	37	20	1438957	1438957	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMAF	8439	broad.mit.edu	37	8	59512611	59512611	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK2	4915	broad.mit.edu	37	9	87636371	87636371	+	3'UTR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88703427	88703427	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT10	170685	broad.mit.edu	37	X	51075776	51075776	+	5'UTR	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131731775	131731775	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	153995572	153995572	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210	23225	broad.mit.edu	37	3	13383235	13383235	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NWD1	284434	broad.mit.edu	37	19	16925914	16925914	+	3'UTR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101096608	101096608	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101097668	101097668	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228482374	228482374	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28141594	28141594	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF1	4956	broad.mit.edu	37	8	103573182	103573182	+	3'UTR	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123518364	123518364	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167525022	167525022	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167645863	167645863	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78412653	78412653	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50943447	50943447	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLAH	55301	broad.mit.edu	37	10	15106469	15106469	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161969779	161969779	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10W1	81341	broad.mit.edu	37	11	58034994	58034994	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG1	144125	broad.mit.edu	37	11	6807144	6807144	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2F2	135948	broad.mit.edu	37	7	143633237	143633237	+	Silent	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G2	81470	broad.mit.edu	37	1	247752207	247752207	+	Silent	SNP	C	T	T	rs146695930	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248402554	248402554	+	Silent	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C13	283092	broad.mit.edu	37	11	49974394	49974394	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C13	283092	broad.mit.edu	37	11	49974893	49974893	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C15	81309	broad.mit.edu	37	11	55322592	55322592	+	Silent	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515672	51515672	+	Missense_Mutation	SNP	A	G	G	rs140334906		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D2	124538	broad.mit.edu	37	17	56247349	56247349	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4E2	26686	broad.mit.edu	37	14	22133768	22133768	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4F6	390648	broad.mit.edu	37	15	102346241	102346241	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52A5	390054	broad.mit.edu	37	11	5153664	5153664	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E4	390081	broad.mit.edu	37	11	5905527	5905527	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A4	120793	broad.mit.edu	37	11	6023494	6023494	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AP2	338675	broad.mit.edu	37	11	56409890	56409890	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5F1	338674	broad.mit.edu	37	11	55761338	55761338	+	Missense_Mutation	SNP	C	G	G	rs58625186	byFrequency;by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5P3	120066	broad.mit.edu	37	11	7846682	7846682	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5V1	81696	broad.mit.edu	37	6	29323407	29323407	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5W2	390148	broad.mit.edu	37	11	55681287	55681287	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N1	128372	broad.mit.edu	37	1	158736093	158736093	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56128658	56128658	+	Silent	SNP	C	T	T	rs148720229		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC3L	23595	broad.mit.edu	37	6	88331837	88331837	+	Intron	SNP	A	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP3	347741	broad.mit.edu	37	17	72938029	72938029	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29624753	29624753	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17566163	17566163	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALB2	79728	broad.mit.edu	37	16	23647873	23647873	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAM	5066	broad.mit.edu	37	5	102343170	102343170	+	Missense_Mutation	SNP	G	T	T	rs148652099		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANX1	24145	broad.mit.edu	37	11	93862607	93862607	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK7	11315	broad.mit.edu	37	1	8030915	8030915	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX1	5075	broad.mit.edu	37	20	21695388	21695388	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55721550	55721550	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH1	5097	broad.mit.edu	37	5	141244523	141244523	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA10	56139	broad.mit.edu	37	5	140237084	140237084	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA4	56144	broad.mit.edu	37	5	140188720	140188720	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB16	57717	broad.mit.edu	37	5	140563163	140563163	+	Silent	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140502607	140502607	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB6	56130	broad.mit.edu	37	5	140531538	140531538	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140736507	140736507	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82585203	82585203	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233152644	233152644	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCYT1B	9468	broad.mit.edu	37	X	24597373	24597373	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD11	22984	broad.mit.edu	37	10	105198552	105198552	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165806140	165806140	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55146466	55146466	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55156788	55156788	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156879773	156879773	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57329065	57329065	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57334861	57334861	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER2	8864	broad.mit.edu	37	2	239157728	239157729	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230503934	230503934	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM2	55276	broad.mit.edu	37	4	37841740	37841740	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR4	65979	broad.mit.edu	37	1	28807101	28807101	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF1	5252	broad.mit.edu	37	6	33383457	33383457	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLPP1	23239	broad.mit.edu	37	18	60646229	60646229	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI15	51050	broad.mit.edu	37	8	75737519	75737519	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGN	23556	broad.mit.edu	37	18	59749964	59749964	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204394057	204394057	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106509787	106509787	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1A	8394	broad.mit.edu	37	1	151171540	151171540	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130839524	130839524	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160901382	160901382	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81957157	81957157	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCXD2	257068	broad.mit.edu	37	3	111427042	111427042	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH1	57475	broad.mit.edu	37	14	68029127	68029127	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20466216	20466216	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133220650	133220650	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3E	55718	broad.mit.edu	37	16	22325425	22325425	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POT1	25913	broad.mit.edu	37	7	124493067	124493067	+	Missense_Mutation	SNP	C	A	A	rs76496261	byFrequency;by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130832708	130832708	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39379247	39379247	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149212100	149212100	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149212135	149212135	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203028292	203028292	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203028294	203028294	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3A	5506	broad.mit.edu	37	7	113518041	113518041	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3C	5507	broad.mit.edu	37	10	93390364	93390364	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94540239	94540239	+	Missense_Mutation	SNP	C	T	T	rs140508899		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3B	28227	broad.mit.edu	37	X	308043	308043	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5B	5526	broad.mit.edu	37	11	64699039	64699039	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM7	11105	broad.mit.edu	37	16	90128232	90128233	+	Intron	DNP	CC	TT	TT			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69012132	69012132	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAA1	5562	broad.mit.edu	37	5	40767545	40767545	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAB1	5564	broad.mit.edu	37	12	120112183	120112183	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAB1	5564	broad.mit.edu	37	12	120112187	120112187	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48855770	48855770	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG2	5593	broad.mit.edu	37	4	82126159	82126159	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROC	5624	broad.mit.edu	37	2	128186390	128186390	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROX1	5629	broad.mit.edu	37	1	214170382	214170382	+	Silent	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS37	136242	broad.mit.edu	37	7	141537561	141537561	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS42	339906	broad.mit.edu	37	3	46873408	46873408	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43343387	43343387	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43412011	43412011	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD8	5714	broad.mit.edu	37	19	38873891	38873891	+	Splice_Site	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSTPIP2	9050	broad.mit.edu	37	18	43573687	43573687	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11577459	11577459	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209302298	209302298	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128312423	128312423	+	Intron	DEL	T	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157370934	157370934	+	Intron	SNP	A	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157926787	157926787	+	Intron	DEL	A	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15593242	15593242	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRS	5802	broad.mit.edu	37	19	5219928	5219928	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121597312	121597312	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52370158	52370158	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1652268	1652268	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1684240	1684240	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSOX2	169714	broad.mit.edu	37	9	139115927	139115927	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSOX2	169714	broad.mit.edu	37	9	139115958	139115958	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDML	140902	broad.mit.edu	37	20	42969754	42969754	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1	23637	broad.mit.edu	37	9	125748687	125748687	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP2C	57826	broad.mit.edu	37	X	131351048	131351048	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80369227	80369228	+	Frame_Shift_Ins	INS	-	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80369234	80369234	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM42	79171	broad.mit.edu	37	19	36120510	36120510	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM47	54502	broad.mit.edu	37	4	40438719	40438719	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1P	5969	broad.mit.edu	37	2	79364039	79364039	+	RNA	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79385915	79385915	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFPL4B	442247	broad.mit.edu	37	6	112671067	112671067	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108494899	108494899	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGR	5995	broad.mit.edu	37	10	86018418	86018418	+	3'UTR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS4	5999	broad.mit.edu	37	1	163042540	163042540	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS9	8787	broad.mit.edu	37	17	63157135	63157135	+	Intron	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMKLA	284716	broad.mit.edu	37	1	42870366	42870366	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS3	9783	broad.mit.edu	37	1	41107607	41107607	+	5'UTR	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK1	83732	broad.mit.edu	37	6	7403150	7403150	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31406967	31406967	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF125	54941	broad.mit.edu	37	18	29617320	29617320	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78343442	78343442	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124754802	124754802	+	Silent	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1L	23322	broad.mit.edu	37	16	53726179	53726179	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21811444	21811444	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL10L	140801	broad.mit.edu	37	14	47120255	47120255	+	3'UTR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPRD2	23248	broad.mit.edu	37	1	150414319	150414319	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS27	6232	broad.mit.edu	37	1	153963171	153963171	+	5'Flank	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRM2	6241	broad.mit.edu	37	2	10264825	10264825	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP12	23223	broad.mit.edu	37	10	99125814	99125814	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTDR1	27156	broad.mit.edu	37	22	23401723	23401723	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38983214	38983214	+	Missense_Mutation	SNP	G	T	T	rs139775280		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237664075	237664075	+	Silent	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237868510	237868510	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23909782	23909782	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51172949	51172949	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92734038	92734038	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASH1	23328	broad.mit.edu	37	6	148855767	148855767	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200246413	200246413	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAMP2	10066	broad.mit.edu	37	15	75144322	75144322	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAPER	49855	broad.mit.edu	37	15	77092562	77092564	+	Intron	DEL	TAG	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38649574	38649574	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52056905	52056905	+	Intron	DEL	A	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52106877	52106877	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1A	6337	broad.mit.edu	37	12	6463650	6463650	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRN2	90507	broad.mit.edu	37	17	45915657	45915657	+	Silent	SNP	C	T	T	rs147761976	byFrequency;by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16B	89866	broad.mit.edu	37	1	177901902	177901902	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24B	10427	broad.mit.edu	37	4	110448546	110448546	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31B	25956	broad.mit.edu	37	10	102258633	102258633	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SECTM1	6398	broad.mit.edu	37	17	80280050	80280050	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELENBP1	8991	broad.mit.edu	37	1	151341801	151341801	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELPLG	6404	broad.mit.edu	37	12	109017819	109017819	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9190417	9190417	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB11	89778	broad.mit.edu	37	18	61387285	61387285	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61308033	61308033	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB7	8710	broad.mit.edu	37	18	61449757	61449758	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE1	5054	broad.mit.edu	37	7	100777184	100777184	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3A1	10291	broad.mit.edu	37	22	30738935	30738935	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B3	23450	broad.mit.edu	37	16	70590033	70590033	+	Intron	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCG	6445	broad.mit.edu	37	13	23821249	23821249	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2A	9644	broad.mit.edu	37	10	105495600	105495600	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51192441	51192441	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPK	23729	broad.mit.edu	37	17	3514090	3514090	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC11	114132	broad.mit.edu	37	19	50462124	50462124	+	Missense_Mutation	SNP	G	C	C	rs149136670	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIK3	23387	broad.mit.edu	37	11	116728895	116728895	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48500154	48500154	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A12	387700	broad.mit.edu	37	10	91198784	91198784	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A5	6510	broad.mit.edu	37	19	47285847	47285847	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92908403	92908403	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92959901	92959901	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A22	79751	broad.mit.edu	37	11	792399	792399	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A8	116369	broad.mit.edu	37	6	35918953	35918953	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A3	6515	broad.mit.edu	37	12	8073955	8073955	+	3'UTR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC32A1	140679	broad.mit.edu	37	20	37357011	37357011	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC40A1	30061	broad.mit.edu	37	2	190444532	190444532	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A4	6527	broad.mit.edu	37	22	32620393	32620393	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101555652	101555652	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101573854	101573854	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A18	348932	broad.mit.edu	37	5	1240646	1240646	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A7	9056	broad.mit.edu	37	14	23244611	23244611	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40656621	40656621	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21174356	21174356	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN13	146857	broad.mit.edu	37	17	33767735	33767735	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMS	6611	broad.mit.edu	37	X	22012524	22012524	+	3'UTR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMU1	55234	broad.mit.edu	37	9	33076711	33076711	+	5'UTR	SNP	G	A	A	rs2274763	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25322382	25322382	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25325177	25325177	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPD2	6633	broad.mit.edu	37	19	46195116	46195116	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51351045	51351045	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1168851	1168851	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	107023017	107023017	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	23689448	23689448	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123593617	123593617	+	5'UTR	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXC	64663	broad.mit.edu	37	X	140335779	140335779	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARCL1	8404	broad.mit.edu	37	4	88416205	88416205	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA6	54558	broad.mit.edu	37	1	48850997	48850997	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35793460	35793460	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228884540	228884540	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2815970	2815970	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM4	84530	broad.mit.edu	37	12	119554754	119554754	+	Nonsense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX8	280659	broad.mit.edu	37	X	52662050	52662050	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA6	338596	broad.mit.edu	37	10	17364936	17364936	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104030832	104030832	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBPL1	57559	broad.mit.edu	37	10	90695184	90695184	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT3	6774	broad.mit.edu	37	17	40483494	40483494	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK17B	9262	broad.mit.edu	37	2	197008460	197008460	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23821150	23821150	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON2	85439	broad.mit.edu	37	14	81799335	81799335	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON2	85439	broad.mit.edu	37	14	81837395	81837395	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX8	9482	broad.mit.edu	37	17	9471808	9471808	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT6B1	391365	broad.mit.edu	37	2	37421501	37421501	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN1	23353	broad.mit.edu	37	7	899726	899726	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT5H	6829	broad.mit.edu	37	19	39964522	39964522	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75621169	75621169	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64685272	64685273	+	Intron	DEL	GG	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TALDO1	6888	broad.mit.edu	37	11	763683	763683	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TALDO1	6888	broad.mit.edu	37	11	763700	763700	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R9	50835	broad.mit.edu	37	12	10962482	10962482	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TATDN3	128387	broad.mit.edu	37	1	212981036	212981036	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D5	9779	broad.mit.edu	37	3	17226519	17226519	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114839736	114839736	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEAL3	85012	broad.mit.edu	37	X	102864437	102864437	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEAL6	158931	broad.mit.edu	37	X	101395859	101395859	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	52896212	52896212	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP11L1	55346	broad.mit.edu	37	11	33076262	33076262	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTE1	202500	broad.mit.edu	37	6	44253930	44253930	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDP2	51567	broad.mit.edu	37	6	24666767	24666767	+	Missense_Mutation	SNP	C	T	T	rs143844222	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDP2	51567	broad.mit.edu	37	6	24667094	24667094	+	5'UTR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDP2	51567	broad.mit.edu	37	6	24667145	24667145	+	5'Flank	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD7	23424	broad.mit.edu	37	9	100245651	100245651	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD1	7003	broad.mit.edu	37	11	12785743	12785743	+	Translation_Start_Site	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65165789	65165789	+	Intron	SNP	A	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65165794	65165794	+	Intron	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20836575	20836575	+	3'UTR	SNP	T	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20859700	20859700	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX10	54881	broad.mit.edu	37	9	103088600	103088600	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX11	56159	broad.mit.edu	37	X	69964040	69964040	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THUMPD2	80745	broad.mit.edu	37	2	39997215	39997215	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE3	7090	broad.mit.edu	37	15	70346774	70346774	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE4	7091	broad.mit.edu	37	9	82242321	82242321	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE4	7091	broad.mit.edu	37	9	82336678	82336678	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF1	8577	broad.mit.edu	37	9	103204311	103204311	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	130185209	130185209	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM168	64418	broad.mit.edu	37	7	112415414	112415414	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM214	54867	broad.mit.edu	37	2	27262916	27262916	+	Silent	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM222	84065	broad.mit.edu	37	1	27658583	27658583	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM66	51669	broad.mit.edu	37	8	29927564	29927564	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMLHE	55217	broad.mit.edu	37	X	154774874	154774874	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19687505	19687505	+	Missense_Mutation	SNP	C	A	A	rs139992374		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC3	160418	broad.mit.edu	37	12	88553910	88553910	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMX1	81542	broad.mit.edu	37	14	51716377	51716377	+	Intron	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175086125	175086125	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNP1	7141	broad.mit.edu	37	2	217724297	217724297	+	3'UTR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6C	57690	broad.mit.edu	37	17	76045357	76045357	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6C	57690	broad.mit.edu	37	17	76061008	76061008	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175335314	175335314	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578177	7578177	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10920156	10920156	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10951204	10951204	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML2	79865	broad.mit.edu	37	6	41162245	41162245	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72680664	72680664	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55032517	55032517	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189020356	189020356	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189022466	189022466	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC6	7225	broad.mit.edu	37	11	101359765	101359765	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73235267	73235267	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73235278	73235278	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49691969	49691969	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116617221	116617221	+	Silent	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV2	51393	broad.mit.edu	37	17	16331603	16331603	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN7	7102	broad.mit.edu	37	X	38525426	38525426	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC15	51112	broad.mit.edu	37	2	3405596	3405596	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL9	164395	broad.mit.edu	37	20	30475102	30475102	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB1	81027	broad.mit.edu	37	20	57598479	57598479	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUT1	64852	broad.mit.edu	37	11	62356484	62356484	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAC2	337867	broad.mit.edu	37	13	99970407	99970407	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBN1	29855	broad.mit.edu	37	16	4924652	4924652	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR7	55148	broad.mit.edu	37	14	93685532	93685532	+	Intron	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B11	10720	broad.mit.edu	37	4	70071185	70071185	+	Intron	SNP	A	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B28	54490	broad.mit.edu	37	4	70152489	70152489	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1L	23074	broad.mit.edu	37	12	100444041	100444041	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35541258	35541259	+	Intron	INS	-	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215812453	215812453	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP40	55230	broad.mit.edu	37	2	234459967	234459967	+	Intron	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UST	10090	broad.mit.edu	37	6	149285749	149285749	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP3	57050	broad.mit.edu	37	4	71555768	71555768	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UVRAG	7405	broad.mit.edu	37	11	75694667	75694667	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	111421723	111421723	+	IGR	SNP	G	C	C	rs11194774	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	113258132	113258132	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	130681539	130681539	+	IGR	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	108817593	108817593	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119692892	119692892	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	122485295	122485295	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27828100	27828100	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49122615	49122615	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50227845	50227845	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58060274	58060274	+	IGR	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	32046685	32046685	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	4206865	4206865	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58377630	58377630	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68429843	68429843	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68429990	68429990	+	IGR	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53983564	53983564	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	62902246	62902246	+	IGR	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	83813945	83813945	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	86411552	86411552	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19476334	19476334	+	IGR	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20336936	20336936	+	IGR	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43744248	43744248	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44589441	44589441	+	IGR	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	63590144	63590144	+	IGR	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82383342	82383342	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95193374	95193374	+	IGR	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102272353	102272353	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	80050928	80050928	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	81677968	81677968	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84924762	84924762	+	IGR	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	10935051	10935060	+	IGR	DEL	TCTCCGGCTA	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32374937	32374937	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32621657	32621657	+	IGR	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33412855	33412855	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33412864	33412864	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33741047	33741047	+	IGR	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34331126	34331126	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34336195	34336195	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34569623	34569623	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34648729	34648729	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48752871	48752871	+	IGR	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	12989470	12989470	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21544417	21544417	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22204693	22204693	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51834895	51834895	+	IGR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60360221	60360221	+	IGR	DEL	C	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	12214958	12214958	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14888675	14888675	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15254428	15254428	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	18699161	18699161	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26232165	26232165	+	IGR	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	3307629	3307629	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22497380	22497380	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44977130	44977130	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	107087137	107087137	+	IGR	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13172952	13172953	+	IGR	DNP	GG	TT	TT			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152628844	152628844	+	IGR	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157599847	157599847	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158495595	158495595	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166245052	166245052	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166245254	166245254	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	27533806	27533806	+	IGR	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	45457862	45457862	+	IGR	SNP	A	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	49202464	49202464	+	IGR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14743923	14743923	+	IGR	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	30261047	30261047	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16365667	16365667	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16414211	16414211	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16414240	16414240	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16954826	16954826	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104112300	104112300	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106905500	106905500	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118239449	118239449	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130253991	130253991	+	IGR	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140426765	140426765	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162361705	162361705	+	IGR	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162362632	162362632	+	IGR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17035182	17035182	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17566890	17566890	+	IGR	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	189092690	189092690	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194595332	194595332	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	232450942	232450942	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58688601	58688601	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	60962005	60962005	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	71282393	71282393	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81425669	81425669	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800498	91800498	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91940179	91940179	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91940217	91940217	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	12829574	12829574	+	IGR	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	176669759	176669759	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	183801951	183801951	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	70174393	70174393	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	73697808	73697808	+	IGR	DEL	C	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	113719216	113719216	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135967356	135967356	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	153472481	153472481	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	36509255	36509255	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	45611545	45611545	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	58969524	58969524	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70212352	70212352	+	IGR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	108924022	108924022	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165456185	165456185	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	178267371	178267371	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910129	25910129	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882404	29882404	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882917	29882917	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	31053726	31053726	+	IGR	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	76878368	76878368	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	77081115	77081115	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	83042483	83042483	+	IGR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	92603468	92603468	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	92603587	92603587	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	100498988	100498988	+	IGR	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106114777	106114777	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	114671410	114671410	+	IGR	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	133318687	133318687	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	161319545	161319545	+	IGR	DEL	A	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29149611	29149611	+	IGR	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	34231304	34231304	+	IGR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48117089	48117089	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57841350	57841350	+	IGR	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58446898	58446898	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63921583	63921583	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	86796415	86796415	+	IGR	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100847354	100847354	+	IGR	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10492717	10492717	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112161736	112161736	+	IGR	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124986151	124986152	+	IGR	DNP	CC	AA	AA			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	12511740	12511740	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	159024255	159024255	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	27064102	27064102	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48942482	48942482	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62520431	62520431	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63031021	63031021	+	IGR	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63454246	63454246	+	IGR	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9767338	9767338	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106207182	106207182	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	143050681	143050681	+	IGR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43342081	43342081	+	IGR	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47009647	47009647	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	85074785	85074785	+	IGR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	93415929	93415929	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	124282379	124282379	+	IGR	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44175556	44175556	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68438706	68438706	+	IGR	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	81652291	81652291	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	101034770	101034770	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134748462	134748462	+	IGR	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26179135	26179135	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	53834353	53834353	+	IGR	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	62104043	62104043	+	IGR	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64576781	64576781	+	IGR	SNP	T	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65176370	65176370	+	IGR	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	87352083	87352083	+	IGR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108315358	108315358	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN3	55350	broad.mit.edu	37	6	133048074	133048074	+	3'UTR	DEL	C	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK2	7444	broad.mit.edu	37	2	58350345	58350345	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR16	146845	broad.mit.edu	37	17	9546400	9546400	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241886562	241886562	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241886581	241886581	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR93	56964	broad.mit.edu	37	15	90245192	90245192	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIF1	11197	broad.mit.edu	37	12	65471667	65471667	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK2	65268	broad.mit.edu	37	9	96021553	96021553	+	Missense_Mutation	SNP	G	T	T	rs112172724	byFrequency;by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XCL1	6375	broad.mit.edu	37	1	168550290	168550290	+	Frame_Shift_Del	DEL	T	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XCL2	6846	broad.mit.edu	37	1	168510352	168510352	+	Frame_Shift_Del	DEL	A	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31570447	31570447	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP1	165904	broad.mit.edu	37	3	39229235	39229235	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168101224	168101224	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56436303	56436303	+	Silent	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO6	23214	broad.mit.edu	37	16	28124184	28124184	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPOT	11260	broad.mit.edu	37	12	64819617	64819617	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17221646	17221646	+	Silent	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17221699	17221699	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17228362	17228362	+	Silent	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZADH2	284273	broad.mit.edu	37	18	72920923	72920923	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBED1	9189	broad.mit.edu	37	X	2407033	2407033	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB11	27107	broad.mit.edu	37	3	101378602	101378602	+	Intron	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145181858	145181858	+	Intron	SNP	G	C	C			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77767417	77767417	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZG16B	124220	broad.mit.edu	37	16	2881957	2881957	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57293514	57293514	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM4	9202	broad.mit.edu	37	1	35817108	35817108	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45865286	45865286	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF157	7712	broad.mit.edu	37	X	47271905	47271905	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF160	90338	broad.mit.edu	37	19	53571731	53571732	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22155657	22155657	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22157153	22157153	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF213	7760	broad.mit.edu	37	16	3188963	3188963	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF254	9534	broad.mit.edu	37	19	24309689	24309689	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF35	7584	broad.mit.edu	37	3	44700712	44700713	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF398	57541	broad.mit.edu	37	7	148876178	148876178	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57193645	57193645	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF510	22869	broad.mit.edu	37	9	99521121	99521121	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF519	162655	broad.mit.edu	37	18	14105896	14105896	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF526	116115	broad.mit.edu	37	19	42729117	42729117	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF560	147741	broad.mit.edu	37	19	9578658	9578658	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF578	147660	broad.mit.edu	37	19	52977390	52977390	+	Intron	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF583	147949	broad.mit.edu	37	19	56925505	56925505	+	Intron	SNP	A	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF585B	92285	broad.mit.edu	37	19	37676497	37676497	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF610	162963	broad.mit.edu	37	19	52869019	52869019	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF681	148213	broad.mit.edu	37	19	23941665	23941665	+	5'UTR	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF727	442319	broad.mit.edu	37	7	63530043	63530043	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63674397	63674397	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP2	124626	broad.mit.edu	37	17	38033026	38033026	+	Silent	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	101833752	101833752	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187694418	187694418	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZXDA	7789	broad.mit.edu	37	X	57935364	57935364	+	Silent	SNP	C	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZXDB	158586	broad.mit.edu	37	X	57620678	57620678	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	44126579	44126579	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	52034613	52034613	+	RNA	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39305004	39305004	+	RNA	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25494547	25494547	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	74423996	74423996	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	56063476	56063476	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89247033	89247033	+	RNA	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89265803	89265803	+	RNA	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89513089	89513089	+	RNA	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90219550	90219550	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90249072	90249072	+	Intron	DEL	A	-	-			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	126965291	126965291	+	Intron	SNP	A	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	75320346	75320346	+	Intron	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142020979	142020979	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142032526	142032526	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142104022	142104022	+	Intron	SNP	C	G	G			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142131907	142131907	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142239624	142239624	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66517672	66517672	+	Intron	SNP	G	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90746326	90746326	+	Silent	SNP	C	G	G	rs149069834	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100698813	100698813	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	103183557	103183557	+	Intron	SNP	G	T	T			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
