Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABLIM1	0	genome.wustl.edu	37	10	116247760	116247760	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	10	116247760	116247760	T	C	SNP	ABLIM1	NM_002313.5	human	genbank	58_37c	-1	reviewed	missense	c.998	p.H333R	1.000	HMMSmart_SM00132	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
ADAMTS20	0	genome.wustl.edu	37	12	43944926	43944926	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	12	43944926	43944926	T	C	SNP	ADAMTS20	NM_025003.3	human	genbank	58_37c	-1	validated	missense	c.239	p.Y80C	1.000	HMMPfam_Pep_M12B_propep	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,HMMPfam_GON,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AGAP3	0	genome.wustl.edu	37	7	150840441	150840441	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	7	150840441	150840441	C	T	SNP	AGAP3	NM_031946.4	human	genbank	58_37c	+1	validated	missense	c.2287	p.R763C	1.000	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,superfamily_Ankyrin repeat	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Miro,superfamily_PH domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
BCL6B	0	genome.wustl.edu	37	17	6928019	6928020	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	17	6928019	6928020	-	CAG	INS	BCL6B	NM_181844.3	human	genbank	58_37c	+1	validated	in_frame_ins	c.701_702	p.238in_frame_insS	0.939:0.528	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ENSG00000105889	0	genome.wustl.edu	37	7	22533452	22533453	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	7	22533452	22533453	CA	-	DEL	ENSG00000105889	ENST00000441815	human	ensembl	58_37c	-1	known	frame_shift_del	c.529_528	p.H176fs	0.256:0.230	NULL	NULL	-	no_errors
ENSG00000238159	0	genome.wustl.edu	37	1	142540166	142540167	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	1	142540166	142540167	-	T	INS	ENSG00000238159	ENST00000417230	human	ensembl	58_37c	+1	known	frame_shift_ins	c.67_68	p.M23fs	0.000:0.000	NULL	NULL	-	no_start_codon:no_stop_codon
FAM38A	0	genome.wustl.edu	37	16	88790292	88790292	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	16	88790292	88790292	T	C	SNP	FAM38A	ENST00000451779	human	ensembl	58_37c	-1	known	missense	c.2933	p.Q978R	1.000	NULL	PatternScan_IG_MHC	-	no_errors
GOLGA8E	0	genome.wustl.edu	37	15	23443505	23443505	+	Silent	SNP	C	C	T	rs71243128	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	15	23443505	23443505	C	T	SNP	GOLGA8E	ENST00000450934	human	ensembl	58_37c	+1	known	silent	c.603	p.R201	0.006	NULL	NULL	-	no_errors
KAT2A	0	genome.wustl.edu	37	17	40272381	40272381	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	17	40272381	40272381	G	A	SNP	KAT2A	NM_021078.2	human	genbank	58_37c	-1	validated	silent	c.471	p.H157	0.486	HMMPfam_PCAF_N	HMMPfam_Acetyltransf_1,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_PCAF_N,superfamily_Acyl-CoA N-acyltransferases (Nat),PatternScan_BROMODOMAIN_1	-	no_errors
MAP6	0	genome.wustl.edu	37	11	75317003	75317003	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	11	75317003	75317003	G	C	SNP	MAP6	NM_033063.1	human	genbank	58_37c	-1	reviewed	missense	c.1166	p.A389G	0.987	HMMPfam_STOP	HMMPfam_STOP	-	no_errors
MYB	0	genome.wustl.edu	37	6	135507043	135507044	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	6	135507043	135507044	-	A	INS	MYB	NM_001130173.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.26_27	p.Y10fs	1.000:0.997	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Wos2,HMMPfam_Myb_DNA-binding,HMMPfam_Cmyb_C	-	no_errors
NPIPL2	0	genome.wustl.edu	37	16	74425902	74425902	+	Missense_Mutation	SNP	T	T	C	rs141751158	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	16	74425902	74425902	T	C	SNP	NPIPL2	ENST00000429990	human	ensembl	58_37c	+1	known	missense	c.1256	p.I419T	0.999	NULL	HMMPfam_NPIP	-	no_errors
OR11H1	0	genome.wustl.edu	37	22	16449539	16449539	+	Missense_Mutation	SNP	A	A	G	rs61969156	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	22	16449539	16449539	A	G	SNP	OR11H1	NM_001005239.1	human	genbank	58_37c	-1	provisional	missense	c.266	p.V89A	0.234	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OTOR	0	genome.wustl.edu	37	20	16730581	16730581	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	20	16730581	16730581	G	A	SNP	OTOR	NM_020157.2	human	genbank	58_37c	+1	reviewed	missense	c.289	p.V97M	0.963	HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_2	HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_2	-	no_errors
P2RY10	0	genome.wustl.edu	37	X	78216689	78216689	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	X	78216689	78216689	C	T	SNP	P2RY10	NM_014499.2	human	genbank	58_37c	+1	reviewed	silent	c.672	p.S224	0.092	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
SOX15	0	genome.wustl.edu	37	17	7491739	7491739	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	17	7491739	7491739	T	G	SNP	SOX15	NM_006942.1	human	genbank	58_37c	-1	reviewed	missense	c.659	p.N220T	0.009	NULL	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box	-	no_errors
SPTB	0	genome.wustl.edu	37	14	65266493	65266493	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	14	65266493	65266493	T	C	SNP	SPTB	NM_001024858.2	human	genbank	58_37c	-1	reviewed	missense	c.1036	p.T346A	1.000	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_PH,HMMSmart_PH,HMMPfam_Spectrin,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF50729	-	no_errors
WIZ	0	genome.wustl.edu	37	19	15547798	15547798	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	19	15547798	15547798	T	G	SNP	WIZ	NM_021241.2	human	genbank	58_37c	-1	validated	silent	c.348	p.S116	0.336	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZNF574	0	genome.wustl.edu	37	19	42585066	42585066	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SB-01A-11D-A142-09	TCGA-A1-A0SB-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	db9d40fb-bfce-4c3b-a6c2-41c5c88982f1	a3254f8e-3bbd-42fc-abea-a5f25b7648b3	19	42585066	42585066	G	A	SNP	ZNF574	NM_022752.5	human	genbank	58_37c	+1	validated	missense	c.2308	p.D770N	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
