Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCB10	23456	genome.wustl.edu	37	1	229683401	229683401	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	1	229683401	229683401	G	C	SNP	ABCB10	NM_012089.2	human	genbank	58_37c	-1	reviewed	missense	c.766	p.L256V	0.817	HMMPfam_ABC_membrane,superfamily_ABC_TM_1	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
AHNAK	79026	genome.wustl.edu	37	11	62295540	62295540	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	11	62295540	62295540	T	C	SNP	AHNAK	NM_001620.1	human	genbank	58_37c	-1	validated	missense	c.6349	p.I2117V	1.000	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC	-	no_errors
ANPEP	290	genome.wustl.edu	37	15	90347575	90347575	+	Missense_Mutation	SNP	C	C	T	rs141631662	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	15	90347575	90347575	C	T	SNP	ANPEP	NM_001150.2	human	genbank	58_37c	-1	reviewed	missense	c.1088	p.R363Q	1.000	HMMPfam_Peptidase_M1,superfamily_SSF55486	PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M1,superfamily_SSF55486,superfamily_SSF63737	-	no_errors
CARD9	64170	genome.wustl.edu	37	9	139266359	139266359	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	9	139266359	139266359	T	C	SNP	CARD9	NM_052813.4	human	genbank	58_37c	-1	reviewed	missense	c.172	p.K58E	1.000	HMMPfam_CARD,superfamily_DEATH domain	HMMPfam_CARD,superfamily_DEATH domain	-	no_errors
CMYA5	202333	genome.wustl.edu	37	5	79032395	79032395	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	5	79032395	79032395	G	A	SNP	CMYA5	NM_153610.3	human	genbank	58_37c	+1	validated	missense	c.7807	p.A2603T	0.007	NULL	HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors
CPT1B	1375	genome.wustl.edu	37	22	51008742	51008742	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	22	51008742	51008742	C	T	SNP	CPT1B	NM_001145135.1	human	genbank	58_37c	-1	reviewed	missense	c.2122	p.A708T	0.801	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases	-	no_errors
ENSG00000123908	0	genome.wustl.edu	37	8	141561427	141561427	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	8	141561427	141561427	G	A	SNP	EIF2C2	ENST00000220592	human	ensembl	58_37c	-1	known	missense	c.1378	p.R460C	1.000	NULL	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like,HMMPfam_DUF1785,superfamily_PAZ domain	-	no_errors
ENSG00000246026	0	genome.wustl.edu	37	18	43666959	43666968	+	RNA	DEL	TCATTAAAAT	TCATTAAAAT	-	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	TCATTAAAAT	TCATTAAAAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	18	43666959	43666968	TCATTAAAAT	-	DEL	ATP5A1	NM_001001937.1	human	genbank	58_37c	-1	reviewed	splice_region_del	c.1176+6_1176+1	e8+6	0.000:0.000:0.087:0.057:0.032:0.008:0.000:0.000:0.000:0.000	-	-	-	no_errors
FAM179B	23116	genome.wustl.edu	37	14	45431733	45431733	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	14	45431733	45431733	C	T	SNP	FAM179B	NM_015091.2	human	genbank	58_37c	+1	validated	nonsense	c.109	p.R37*	0.185	NULL	superfamily_ARM repeat	-	no_errors
FAM20C	56975	genome.wustl.edu	37	7	299785	299785	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	7	299785	299785	G	C	SNP	FAM20C	NM_020223.2	human	genbank	58_37c	+1	validated	missense	c.1594	p.D532H	1.000	HMMPfam_DUF1193	HMMPfam_DUF1193	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	10	8111433	8111434	CA	-	DEL	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors
GLTSCR2	29997	genome.wustl.edu	37	19	48258141	48258141	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	19	48258141	48258141	A	G	SNP	GLTSCR2	NM_015710.4	human	genbank	58_37c	+1	validated	missense	c.1046	p.H349R	0.037	HMMPfam_Nop53	HMMPfam_Nop53	-	no_errors
GNE	10020	genome.wustl.edu	37	9	36217480	36217480	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	9	36217480	36217480	C	T	SNP	GNE	NM_001128227.1	human	genbank	58_37c	-1	reviewed	missense	c.2144	p.R715H	1.000	superfamily_SSF53067	HMMPfam_ROK,HMMPfam_Epimerase_2,superfamily_SSF53067,superfamily_SSF53756	-	no_errors
GOLGB1	2804	genome.wustl.edu	37	3	121415242	121415242	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	3	121415242	121415242	C	A	SNP	GOLGB1	NM_004487.3	human	genbank	58_37c	-1	validated	missense	c.4113	p.Q1371H	0.961	NULL	HMMSmart_SM00340,superfamily_Prefoldin,superfamily_Spectrin repeat	-	no_errors
HECW2	57520	genome.wustl.edu	37	2	197183859	197183859	+	Silent	SNP	G	G	A	rs142030437	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	2	197183859	197183859	G	A	SNP	HECW2	NM_020760.1	human	genbank	58_37c	-1	provisional	silent	c.1755	p.S585	0.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
HS2ST1	9653	genome.wustl.edu	37	1	87549897	87549897	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	1	87549897	87549897	A	G	SNP	HS2ST1	NM_012262.3	human	genbank	58_37c	+1	reviewed	missense	c.384	p.I128M	1.000	HMMPfam_HS2ST,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_HS2ST,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LRBA	987	genome.wustl.edu	37	4	151223818	151223818	+	Missense_Mutation	SNP	T	T	C	rs141003686	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	4	151223818	151223818	T	C	SNP	LRBA	NM_006726.2	human	genbank	58_37c	-1	validated	missense	c.8009	p.Y2670C	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
PCDHA12	56137	genome.wustl.edu	37	5	140256806	140256806	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	5	140256806	140256806	G	A	SNP	PCDHA12	NM_018903.2	human	genbank	58_37c	+1	reviewed	silent	c.1749	p.R583	0.000	superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
ROBO1	6091	genome.wustl.edu	37	3	78719385	78719385	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	3	78719385	78719385	C	G	SNP	ROBO1	NM_002941.3	human	genbank	58_37c	-1	reviewed	missense	c.1409	p.G470A	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
SNTA1	6640	genome.wustl.edu	37	20	31996318	31996318	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	20	31996318	31996318	C	A	SNP	SNTA1	NM_003098.2	human	genbank	58_37c	-1	reviewed	missense	c.1513	p.A505S	1.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
SYT16	83851	genome.wustl.edu	37	14	62536500	62536500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	14	62536500	62536500	G	A	SNP	SYT16	NM_031914.2	human	genbank	58_37c	+1	validated	missense	c.703	p.G235R	0.023	NULL	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
SYT5	6861	genome.wustl.edu	37	19	55690340	55690340	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	19	55690340	55690340	G	A	SNP	SYT5	NM_003180.2	human	genbank	58_37c	-1	validated	missense	c.70	p.H24Y	0.568	NULL	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
TMEM132D	121256	genome.wustl.edu	37	12	129569107	129569107	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	12	129569107	129569107	G	A	SNP	TMEM132D	NM_133448.2	human	genbank	58_37c	-1	validated	silent	c.1584	p.I528	0.004	NULL	NULL	-	no_errors
TTK	7272	genome.wustl.edu	37	6	80746264	80746264	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	6	80746264	80746264	G	A	SNP	TTK	NM_003318.4	human	genbank	58_37c	+1	reviewed	missense	c.1997	p.G666E	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
TUBA1C	84790	genome.wustl.edu	37	12	49666122	49666122	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	12	49666122	49666122	G	T	SNP	TUBA1C	NM_032704.3	human	genbank	58_37c	+1	provisional	missense	c.462	p.M154I	1.000	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ	HMMPfam_Tubulin,superfamily_Tub_FtsZ_C,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin_FtsZ	-	no_errors
VWA3A	146177	genome.wustl.edu	37	16	22143005	22143005	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	16	22143005	22143005	G	A	SNP	VWA3A	NM_173615.3	human	genbank	58_37c	+1	validated	silent	c.1827	p.S609	0.030	superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	-	no_errors
