Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AGAP7	0	genome.wustl.edu	37	10	51465579	51465579	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	10	51465579	51465579	A	G	SNP	AGAP7	NM_001077685.1	human	genbank	58_37c	-1	provisional	missense	c.877	p.Y293H	1.000	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP,HMMPfam_PH,HMMSmart_PH,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_SSF50729	-	no_errors
AKT3	10000	genome.wustl.edu	37	1	243727150	243727150	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	243727150	243727150	A	G	SNP	AKT3	NM_005465.3	human	genbank	58_37c	-1	reviewed	silent	c.820	p.L274	1.000	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like	-	no_errors
ARHGAP31	0	genome.wustl.edu	37	3	119133553	119133553	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	3	119133553	119133553	C	T	SNP	ARHGAP31	NM_020754.2	human	genbank	58_37c	+1	reviewed	missense	c.2777	p.A926V	0.890	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	-	no_errors
ATHL1	80162	genome.wustl.edu	37	11	289917	289917	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	11	289917	289917	G	A	SNP	ATHL1	NM_025092.4	human	genbank	58_37c	+1	validated	missense	c.101	p.R34Q	0.926	NULL	HMMPfam_Glyco_hydro_65m,superfamily_Six-hairpin glycosidases	-	no_errors
BCAT2	587	genome.wustl.edu	37	19	49303011	49303011	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	19	49303011	49303011	C	T	SNP	BCAT2	NM_001190.3	human	genbank	58_37c	-1	reviewed	missense	c.616	p.V206M	0.016	HMMPfam_Aminotran_4,superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes	HMMPfam_Aminotran_4,superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes,PatternScan_AA_TRANSFER_CLASS_4	-	no_errors
BRWD1	54014	genome.wustl.edu	37	21	40570751	40570751	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	21	40570751	40570751	C	T	SNP	BRWD1	NM_018963.3	human	genbank	58_37c	-1	reviewed	missense	c.5591	p.G1864E	0.010	superfamily_WD40 repeat-like	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_BROMODOMAIN_1,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
BRWD1	54014	genome.wustl.edu	37	21	40570851	40570851	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	21	40570851	40570851	C	G	SNP	BRWD1	NM_018963.3	human	genbank	58_37c	-1	reviewed	missense	c.5491	p.D1831H	0.001	superfamily_WD40 repeat-like	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_BROMODOMAIN_1,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
BRWD1	54014	genome.wustl.edu	37	21	40571558	40571558	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	21	40571558	40571558	C	G	SNP	BRWD1	NM_018963.3	human	genbank	58_37c	-1	reviewed	missense	c.4784	p.R1595T	0.960	superfamily_WD40 repeat-like	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_BROMODOMAIN_1,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
C12orf57	113246	genome.wustl.edu	37	12	7053746	7053746	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	12	7053746	7053746	G	A	SNP	C12orf57	NM_138425.2	human	genbank	58_37c	+1	provisional	missense	c.160	p.V54M	1.000	NULL	NULL	-	no_errors
C9orf93	203238	genome.wustl.edu	37	9	15778997	15778998	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	9	15778997	15778998	TT	-	DEL	C9orf93	NM_173550.2	human	genbank	58_37c	+1	predicted	frame_shift_del	c.2930_2931	p.L977fs	0.997:1.000	NULL	NULL	-	no_errors
CCDC79	283847	genome.wustl.edu	37	16	66803899	66803899	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	16	66803899	66803899	G	T	SNP	CCDC79	NM_001136505.1	human	genbank	58_37c	-1	provisional	missense	c.1586	p.T529N	0.016	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,superfamily_ARM repeat	-	no_errors
CDK12	0	genome.wustl.edu	37	17	37681111	37681111	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	17	37681111	37681111	G	T	SNP	CDK12	NM_016507.2	human	genbank	58_37c	+1	validated	missense	c.3280	p.V1094L	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CNOT1	23019	genome.wustl.edu	37	16	58589801	58589801	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	16	58589801	58589801	G	A	SNP	CNOT1	NM_016284.3	human	genbank	58_37c	-1	validated	nonsense	c.2491	p.Q831*	1.000	NULL	HMMPfam_Not1,PatternScan_LECTIN_LEGUME_BETA	-	no_errors
CSRNP2	81566	genome.wustl.edu	37	12	51457800	51457800	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	12	51457800	51457800	A	G	SNP	CSRNP2	NM_030809.1	human	genbank	58_37c	-1	provisional	missense	c.1361	p.L454P	1.000	NULL	NULL	-	no_errors
DMKN	93099	genome.wustl.edu	37	19	36002403	36002404	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	19	36002403	36002404	GC	-	DEL	DMKN	NM_033317.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.828_827	p.S276fs	0.000:0.000	NULL	NULL	-	no_errors
DOPEY1	23033	genome.wustl.edu	37	6	83877655	83877655	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	6	83877655	83877655	C	G	SNP	DOPEY1	NM_015018.2	human	genbank	58_37c	+1	validated	silent	c.7167	p.T2389	0.987	NULL	HMMPfam_Dopey_N	-	no_errors
DRD4	1815	genome.wustl.edu	37	11	640571	640571	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	11	640571	640571	G	A	SNP	DRD4	NM_000797.3	human	genbank	58_37c	+1	reviewed	missense	c.1228	p.V410I	0.792	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
ENSG00000123908	0	genome.wustl.edu	37	8	141566309	141566309	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	8	141566309	141566309	G	C	SNP	EIF2C2	ENST00000220592	human	ensembl	58_37c	-1	known	missense	c.1103	p.T368S	1.000	HMMPfam_PAZ,superfamily_PAZ domain	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like,HMMPfam_DUF1785,superfamily_PAZ domain	-	no_errors
ENSG00000214564	0	genome.wustl.edu	37	10	75480346	75480346	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	10	75480346	75480346	C	A	SNP	BMS1P4	NR_026592.2	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
ENSG00000245272	0	genome.wustl.edu	37	4	68547754	68547754	+	RNA	SNP	A	A	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	4	68547754	68547754	A	T	SNP	UBA6	NM_018227.5	human	genbank	58_37c	-1	validated	intronic	c.229+83	e3+83	0.325	-	-	-	no_errors
ENSG00000246098	0	genome.wustl.edu	37	12	123810324	123810330	+	RNA	DEL	ATTTAGG	ATTTAGG	-	rs72419030	byCluster;by1000genomes	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	ATTTAGG	ATTTAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	12	123810324	123810330	ATTTAGG	-	DEL	SBNO1	NM_018183.3	human	genbank	58_37c	-1	validated	intronic	c.1873-184_1873-178	e14-178	0.000:0.000:0.001:0.001:0.003:0.000:0.000	-	-	-	no_errors
EZH1	2145	genome.wustl.edu	37	17	40856673	40856673	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	17	40856673	40856673	C	G	SNP	EZH1	NM_001991.3	human	genbank	58_37c	-1	validated	missense	c.1964	p.R655P	1.000	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain	HMMSmart_SM00717,HMMPfam_SET,HMMSmart_SM00317,PatternScan_AP_NUCLEASE_F2_1,superfamily_SET domain	-	no_errors
GNAT2	2780	genome.wustl.edu	37	1	110148929	110148929	+	Splice_Site	DEL	C	C	-	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	110148929	110148929	C	-	DEL	GNAT2	NM_005272.3	human	genbank	58_37c	-1	reviewed	splice_site_del	c.590+1	e5+1	1.000	-	-	-	no_errors
GRID2	2895	genome.wustl.edu	37	4	94377069	94377069	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	4	94377069	94377069	C	T	SNP	GRID2	NM_001510.2	human	genbank	58_37c	+1	validated	missense	c.1802	p.T601M	1.000	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
HSPG2	3339	genome.wustl.edu	37	1	22211365	22211365	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	22211365	22211365	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	58_37c	-1	known	missense	c.1402	p.D468N	0.980	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_Laminin_B,HMMPfam_SEA,HMMSmart_SM00200,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,HMMSmart_SM00281,superfamily_Immunoglobulin,superfamily_EGF/Laminin	-	no_errors
IRS4	8471	genome.wustl.edu	37	X	107979179	107979179	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	X	107979179	107979179	G	A	SNP	IRS4	NM_003604.2	human	genbank	58_37c	-1	reviewed	silent	c.396	p.A132	0.980	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729	-	no_errors
ITIH5L	347365	genome.wustl.edu	37	X	54784623	54784627	+	Frame_Shift_Del	DEL	AGCAG	AGCAG	-	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	AGCAG	AGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	X	54784623	54784627	AGCAG	-	DEL	ITIH5L	NM_198510.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1884_1880	p.S627fs	0.000:0.000:0.001:0.003:0.070	NULL	HMMPfam_VWA,HMMSmart_VWA,HMMSmart_VIT,HMMPfam_ITI_HC_C,HMMPfam_VIT,superfamily_SSF53300	-	no_errors
JPH2	57158	genome.wustl.edu	37	20	42788508	42788508	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	20	42788508	42788508	C	T	SNP	JPH2	NM_020433.4	human	genbank	58_37c	-1	reviewed	missense	c.919	p.E307K	1.000	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	HMMPfam_MORN,HMMSmart_SM00698,PatternScan_SUGAR_TRANSPORT_1,PatternScan_XYLOSE_ISOMERASE_1,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	-	no_errors
KIAA1199	57214	genome.wustl.edu	37	15	81229087	81229087	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	15	81229087	81229087	C	G	SNP	KIAA1199	NM_018689.1	human	genbank	58_37c	+1	validated	missense	c.3082	p.L1028V	0.757	NULL	HMMPfam_G8	-	no_errors
LRP2	4036	genome.wustl.edu	37	2	170042184	170042184	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	2	170042184	170042184	C	T	SNP	LRP2	NM_004525.2	human	genbank	58_37c	-1	reviewed	missense	c.9674	p.G3225E	1.000	HMMSmart_LY,superfamily_SSF63825	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
MAFG	4097	genome.wustl.edu	37	17	79880760	79880760	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	17	79880760	79880760	C	T	SNP	MAFG	NM_002359.2	human	genbank	58_37c	-1	validated	silent	c.210	p.V70	0.998	HMMPfam_bZIP_Maf,HMMSmart_BRLZ	HMMPfam_bZIP_Maf,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA	-	no_errors
MFSD6L	162387	genome.wustl.edu	37	17	8702017	8702017	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	17	8702017	8702017	G	C	SNP	MFSD6L	NM_152599.3	human	genbank	58_37c	-1	validated	missense	c.422	p.P141R	0.000	NULL	superfamily_MFS_gen_substrate_transporter	-	no_errors
MUC12	10071	genome.wustl.edu	37	7	100639291	100639291	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	7	100639291	100639291	C	T	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.5876	p.S1959F	0.414	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MUC12	10071	genome.wustl.edu	37	7	100647790	100647790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	7	100647790	100647790	C	T	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.14375	p.S4792F	0.001	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MYO1D	4642	genome.wustl.edu	37	17	31087405	31087405	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	17	31087405	31087405	A	T	SNP	MYO1D	NM_015194.1	human	genbank	58_37c	-1	provisional	missense	c.1199	p.I400N	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_TH1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
OR2D2	120776	genome.wustl.edu	37	11	6913663	6913663	+	Silent	SNP	G	G	A	rs139169283	by1000genomes	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	11	6913663	6913663	G	A	SNP	OR2D2	NM_003700.1	human	genbank	58_37c	-1	provisional	silent	c.69	p.T23	0.019	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PDZRN4	29951	genome.wustl.edu	37	12	41946516	41946516	+	Missense_Mutation	SNP	G	G	A	rs140551427	byFrequency	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	12	41946516	41946516	G	A	SNP	PDZRN4	NM_013377.3	human	genbank	58_37c	+1	validated	missense	c.488	p.R163Q	1.000	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178952090	178952090	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	3	178952090	178952090	G	C	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3145	p.G1049R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PRRT3	285368	genome.wustl.edu	37	3	9990556	9990556	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	3	9990556	9990556	G	A	SNP	PRRT3	NM_207351.3	human	genbank	58_37c	-1	validated	missense	c.1057	p.R353W	1.000	NULL	NULL	-	no_errors
RNF213	57674	genome.wustl.edu	37	17	78360175	78360175	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	17	78360175	78360175	C	T	SNP	RNF213	ENST00000508628	human	ensembl	58_37c	+1	known	missense	c.14665	p.R4889C	0.001	NULL	HMMSmart_SM00184,HMMSmart_SM00382,HMMPfam_zf-C3HC4,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_RING/U-box	-	no_errors
RP1	6101	genome.wustl.edu	37	8	55540804	55540804	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	8	55540804	55540804	C	A	SNP	RP1	NM_006269.1	human	genbank	58_37c	+1	reviewed	missense	c.4362	p.S1454R	0.848	NULL	HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837	-	no_errors
RPS6KA6	27330	genome.wustl.edu	37	X	83411145	83411145	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	X	83411145	83411145	C	T	SNP	RPS6KA6	NM_014496.4	human	genbank	58_37c	-1	reviewed	missense	c.196	p.E66K	1.000	superfamily_Protein kinase-like (PK-like)	PatternScan_SERPIN,HMMSmart_SM00133,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
RTN4IP1	84816	genome.wustl.edu	37	6	107076797	107076806	+	Frame_Shift_Del	DEL	TAATCCTTCT	TAATCCTTCT	-	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	TAATCCTTCT	TAATCCTTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	6	107076797	107076806	TAATCCTTCT	-	DEL	RTN4IP1	NM_032730.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.100_91	p.R31fs	1.000:0.994:0.995:0.222:0.003:0.000:0.000:0.002:0.039:0.026	NULL	PatternScan_QOR_ZETA_CRYSTAL,superfamily_GroES-like,HMMPfam_ADH_zinc_N,HMMPfam_ADH_N,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
RYR2	6262	genome.wustl.edu	37	1	237711763	237711763	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	237711763	237711763	C	A	SNP	RYR2	NM_001035.2	human	genbank	58_37c	+1	reviewed	missense	c.2939	p.P980H	1.000	HMMPfam_RyR	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SAPS1	22870	genome.wustl.edu	37	19	55753591	55753591	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	19	55753591	55753591	G	T	SNP	SAPS1	NM_014931.3	human	genbank	58_37c	-1	validated	missense	c.788	p.S263Y	0.979	HMMPfam_SAPS	HMMPfam_SAPS	-	no_errors
SCFD2	152579	genome.wustl.edu	37	4	54231342	54231342	+	Missense_Mutation	SNP	G	G	C	rs147960965	byCluster;by1000genomes	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	4	54231342	54231342	G	C	SNP	SCFD2	NM_152540.3	human	genbank	58_37c	-1	validated	missense	c.767	p.A256G	1.000	NULL	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins	-	no_errors
SF3B4	10262	genome.wustl.edu	37	1	149895759	149895759	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	149895759	149895759	C	A	SNP	SF3B4	NM_005850.3	human	genbank	58_37c	-1	reviewed	missense	c.1061	p.R354L	1.000	NULL	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
SLC6A13	6540	genome.wustl.edu	37	12	352926	352926	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	12	352926	352926	A	T	SNP	SLC6A13	NM_016615.2	human	genbank	58_37c	-1	provisional	missense	c.256	p.F86I	1.000	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
SVEP1	79987	genome.wustl.edu	37	9	113192280	113192280	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	9	113192280	113192280	A	C	SNP	SVEP1	NM_153366.3	human	genbank	58_37c	-1	validated	silent	c.5535	p.V1845	0.994	superfamily_Complement control module/SCR domain	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Pentaxin,HMMSmart_SM00159,HMMSmart_SM00179,HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_HYR,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,superfamily_Complement control module/SCR domain,PatternScan_EGF_CA,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
TCEAL2	140597	genome.wustl.edu	37	X	101382274	101382274	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	X	101382274	101382274	C	A	SNP	TCEAL2	NM_080390.3	human	genbank	58_37c	+1	reviewed	missense	c.472	p.H158N	0.034	HMMPfam_TFA	HMMPfam_TFA	-	no_errors
TCF7	6932	genome.wustl.edu	37	5	133481516	133481516	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	5	133481516	133481516	T	A	SNP	TCF7	ENST00000340914	human	ensembl	58_37c	+1	known	missense	c.1090	p.W364R	0.004	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box,HMMPfam_CTNNB1_binding	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	17	7578263	7578263	G	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.586	p.R196*	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TSTD1	0	genome.wustl.edu	37	1	161008416	161008416	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	161008416	161008416	G	T	SNP	TSTD1	NM_001113207.1	human	genbank	58_37c	-1	validated	silent	c.58	p.R20	0.929	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase	-	no_errors
UNC45A	55898	genome.wustl.edu	37	15	91485969	91485969	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	15	91485969	91485969	T	G	SNP	UNC45A	ENST00000454296	human	ensembl	58_37c	+1	known	missense	c.990	p.I330M	0.000	NULL	HMMPfam_TPR_1,HMMPfam_TPR_2,superfamily_ARM-type_fold,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
USH2A	7399	genome.wustl.edu	37	1	216348792	216348792	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	216348792	216348792	C	T	SNP	USH2A	NM_206933.2	human	genbank	58_37c	-1	reviewed	missense	c.4429	p.G1477R	0.120	superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
VRK3	51231	genome.wustl.edu	37	19	50482398	50482398	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	19	50482398	50482398	G	T	SNP	VRK3	NM_016440.3	human	genbank	58_37c	-1	reviewed	missense	c.1378	p.L460M	0.003	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	-	no_errors
WWP2	11060	genome.wustl.edu	37	16	69971470	69971470	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	16	69971470	69971470	A	T	SNP	WWP2	NM_007014.3	human	genbank	58_37c	+1	reviewed	missense	c.2258	p.Q753L	1.000	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT	HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB	-	no_errors
ZNF160	90338	genome.wustl.edu	37	19	53571578	53571578	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	19	53571578	53571578	C	T	SNP	ZNF160	NM_001102603.1	human	genbank	58_37c	-1	reviewed	missense	c.2209	p.E737K	0.001	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF160	90338	genome.wustl.edu	37	19	53573463	53573463	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	19	53573463	53573463	A	C	SNP	ZNF160	NM_001102603.1	human	genbank	58_37c	-1	reviewed	missense	c.324	p.S108R	0.001	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF335	63925	genome.wustl.edu	37	20	44596988	44596988	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	20	44596988	44596988	C	T	SNP	ZNF335	NM_022095.3	human	genbank	58_37c	-1	reviewed	silent	c.456	p.V152	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF480	147657	genome.wustl.edu	37	19	52824933	52824933	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	19	52824933	52824933	G	C	SNP	ZNF480	NM_144684.2	human	genbank	58_37c	+1	validated	missense	c.430	p.D144H	0.000	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF642	339559	genome.wustl.edu	37	1	40961283	40961283	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	1	40961283	40961283	C	T	SNP	ZNF642	NM_198494.2	human	genbank	58_37c	+1	validated	missense	c.1133	p.S378F	1.000	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF705D	728957	genome.wustl.edu	37	8	11970495	11970495	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	8	11970495	11970495	G	A	SNP	ZNF705D	NM_001039615.3	human	genbank	58_37c	+1	validated	missense	c.731	p.R244Q	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF821	55565	genome.wustl.edu	37	16	71893986	71893986	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CW-01A-21D-A10Y-09	TCGA-A2-A0CW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	da4f0f85-b16f-40fa-95c6-524d70d7ac4d	b6b51168-dc64-4bb1-aca5-346a1f1c8b67	16	71893986	71893986	C	G	SNP	ZNF821	NM_017530.1	human	genbank	58_37c	-1	provisional	missense	c.1048	p.E350Q	0.991	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
