Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACAT2	39	genome.wustl.edu	37	6	160189620	160189620	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	6	160189620	160189620	T	A	SNP	ACAT2	NM_005891.2	human	genbank	58_37c	+1	reviewed	silent	c.450	p.G150	0.983	HMMPfam_Thiolase_N,superfamily_Thiolase-like	HMMPfam_Thiolase_N,HMMPfam_Thiolase_C,PatternScan_THIOLASE_1,PatternScan_THIOLASE_3,PatternScan_THIOLASE_2,superfamily_Thiolase-like	-	no_errors
ARHGAP10	79658	genome.wustl.edu	37	4	148985600	148985600	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	4	148985600	148985600	G	A	SNP	ARHGAP10	ENST00000507661	human	ensembl	58_37c	+1	known	missense	c.1093	p.V365M	0.022	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,PatternScan_IG_MHC	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,PatternScan_IG_MHC,superfamily_GTPase activation domain GAP	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
C20orf186	149954	genome.wustl.edu	37	20	31671605	31671605	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	20	31671605	31671605	G	A	SNP	C20orf186	NM_182519.2	human	genbank	58_37c	+1	validated	missense	c.602	p.G201E	0.997	HMMPfam_LBP_BPI_CETP,HMMSmart_SM00328	HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,HMMPfam_LBP_BPI_CETP,HMMSmart_SM00328,superfamily_Bactericidal permeability-increasing protein BPI	-	no_errors
C8orf40	114926	genome.wustl.edu	37	8	42407725	42407725	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	8	42407725	42407725	G	A	SNP	C8orf40	NM_001135674.1	human	genbank	58_37c	+1	validated	missense	c.298	p.D100N	1.000	NULL	NULL	-	no_errors
CRY2	1408	genome.wustl.edu	37	11	45882531	45882531	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	45882531	45882531	G	A	SNP	CRY2	NM_021117.3	human	genbank	58_37c	+1	validated	silent	c.663	p.E221	1.000	superfamily_DNA_photolyase_N	HMMPfam_FAD_binding_7,superfamily_Photolyase_FAD-bd/Cryptochr_C,HMMPfam_DNA_photolyase,superfamily_DNA_photolyase_N	-	no_errors
DCAF4L2	138009	genome.wustl.edu	37	8	88885215	88885215	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	8	88885215	88885215	C	T	SNP	DCAF4L2	NM_152418.3	human	genbank	58_37c	-1	validated	missense	c.985	p.V329M	0.993	HMMSmart_WD40,superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
DDIT4L	115265	genome.wustl.edu	37	4	101108852	101108852	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	4	101108852	101108852	T	C	SNP	DDIT4L	NM_145244.2	human	genbank	58_37c	-1	provisional	silent	c.564	p.T188	0.999	NULL	HMMPfam_RTP801_C	-	no_errors
EML6	0	genome.wustl.edu	37	2	55119763	55119763	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	55119763	55119763	G	T	SNP	EML6	NM_001039753.2	human	genbank	58_37c	+1	validated	silent	c.2712	p.G904	0.997	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	HMMSmart_SM00320,HMMPfam_HELP,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ENSG00000185040	0	genome.wustl.edu	37	7	76169673	76169673	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	7	76169673	76169673	G	C	SNP	ENSG00000185040	ENST00000338590	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-76169673	NULL	0.237	-	-	-	no_coding_region:pseudogene
FFAR1	2864	genome.wustl.edu	37	19	35843061	35843061	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	19	35843061	35843061	G	A	SNP	FFAR1	NM_005303.2	human	genbank	58_37c	+1	reviewed	missense	c.607	p.V203M	0.998	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
FMO5	2330	genome.wustl.edu	37	1	146680607	146680607	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	1	146680607	146680607	G	T	SNP	FMO5	NM_001461.2	human	genbank	58_37c	-1	reviewed	missense	c.637	p.L213I	1.000	HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_FAD/NAD(P)-binding domain	HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_FAD/NAD(P)-binding domain	-	no_errors
GPR98	84059	genome.wustl.edu	37	5	90052316	90052316	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	5	90052316	90052316	G	T	SNP	GPR98	NM_032119.3	human	genbank	58_37c	+1	reviewed	nonsense	c.11626	p.E3876*	0.000	NULL	HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
GRIN1	2902	genome.wustl.edu	37	9	140052856	140052856	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	9	140052856	140052856	G	C	SNP	GRIN1	NM_007327.3	human	genbank	58_37c	+1	reviewed	missense	c.994	p.D332H	0.966	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_CaM_bdg_C0,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II,superfamily_Voltage-gated potassium channels	-	no_errors
HDLBP	3069	genome.wustl.edu	37	2	242202140	242202140	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	242202140	242202140	T	C	SNP	HDLBP	NM_005336.3	human	genbank	58_37c	-1	validated	missense	c.436	p.R146G	0.030	superfamily_SSF54791	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791	-	no_errors
HELZ	9931	genome.wustl.edu	37	17	65184713	65184713	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	17	65184713	65184713	C	T	SNP	HELZ	NM_014877.3	human	genbank	58_37c	-1	validated	missense	c.884	p.R295H	1.000	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,HMMPfam_PAM2,superfamily_SSF52540,superfamily_SSF90229	-	no_errors
IDH3G	3421	genome.wustl.edu	37	X	153055671	153055671	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	X	153055671	153055671	A	G	SNP	IDH3G	NM_004135.2	human	genbank	58_37c	-1	reviewed	missense	c.212	p.L71P	0.943	HMMPfam_Iso_dh,superfamily_SSF53659	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_SSF53659	-	no_errors
IGF2R	3482	genome.wustl.edu	37	6	160489290	160489290	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	6	160489290	160489290	T	C	SNP	IGF2R	NM_000876.2	human	genbank	58_37c	+1	reviewed	silent	c.4125	p.A1375	1.000	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain	HMMPfam_CIMR,HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,superfamily_Mannose 6-phosphate receptor domain,superfamily_Kringle-like	-	no_errors
KCNA5	3741	genome.wustl.edu	37	12	5153647	5153647	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	12	5153647	5153647	C	T	SNP	KCNA5	NM_002234.2	human	genbank	58_37c	+1	reviewed	silent	c.334	p.L112	0.003	NULL	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels	-	no_errors
KIAA2026	158358	genome.wustl.edu	37	9	6007235	6007235	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	9	6007235	6007235	G	A	SNP	KIAA2026	NM_001017969.2	human	genbank	58_37c	-1	validated	silent	c.553	p.L185	1.000	superfamily_Bromodomain	superfamily_Bromodomain	-	no_errors
LRP12	29967	genome.wustl.edu	37	8	105503535	105503535	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	8	105503535	105503535	G	A	SNP	LRP12	NM_013437.4	human	genbank	58_37c	-1	reviewed	missense	c.1946	p.S649F	1.000	NULL	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module	-	no_errors
MAML3	55534	genome.wustl.edu	37	4	140811603	140811603	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	4	140811603	140811603	G	A	SNP	MAML3	NM_018717.4	human	genbank	58_37c	-1	validated	silent	c.987	p.F329	1.000	NULL	HMMPfam_MamL-1	-	no_errors
MKI67	4288	genome.wustl.edu	37	10	129921415	129921415	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	10	129921415	129921415	G	A	SNP	MKI67	NM_002417.4	human	genbank	58_37c	-1	reviewed	silent	c.111	p.I37	0.933	HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain	HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain,HMMPfam_K167R	-	no_errors
MNAT1	4331	genome.wustl.edu	37	14	61285489	61285489	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	14	61285489	61285489	G	C	SNP	MNAT1	NM_002431.3	human	genbank	58_37c	+1	validated	missense	c.611	p.R204T	1.000	HMMPfam_MAT1	HMMSmart_SM00184,HMMPfam_MAT1,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9084121	9084121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	19	9084121	9084121	G	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.7694	p.T2565M	0.183	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MYT1L	23040	genome.wustl.edu	37	2	1843052	1843052	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	1843052	1843052	C	G	SNP	MYT1L	NM_015025.2	human	genbank	58_37c	-1	validated	missense	c.2943	p.K981N	1.000	superfamily_SSF103637	HMMPfam_zf-C2HC,HMMPfam_MYT1,PatternScan_EF_HAND_1,superfamily_SSF103637	-	no_errors
NAT8	9027	genome.wustl.edu	37	2	73868674	73868674	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	73868674	73868674	G	T	SNP	NAT8	NM_003960.3	human	genbank	58_37c	-1	reviewed	missense	c.82	p.H28N	0.987	superfamily_Acyl_CoA_acyltransferase	HMMPfam_Acetyltransf_1,superfamily_Acyl_CoA_acyltransferase	-	no_errors
NXF3	56000	genome.wustl.edu	37	X	102339332	102339332	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	X	102339332	102339332	G	C	SNP	NXF3	NM_022052.1	human	genbank	58_37c	-1	reviewed	missense	c.289	p.P97A	0.143	NULL	HMMPfam_NTF2,HMMPfam_Tap-RNA_bind,superfamily_NTF2-like,superfamily_RNA-binding domain RBD	-	no_errors
OR5A1	219982	genome.wustl.edu	37	11	59211431	59211431	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	59211431	59211431	C	T	SNP	OR5A1	NM_001004728.1	human	genbank	58_37c	+1	provisional	nonsense	c.790	p.R264*	0.337	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PDE6A	5145	genome.wustl.edu	37	5	149310672	149310672	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	5	149310672	149310672	G	A	SNP	PDE6A	NM_000440.2	human	genbank	58_37c	-1	reviewed	silent	c.777	p.F259	1.000	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMPfam_GAF,HMMSmart_GAF,HMMSmart_HDc,superfamily_SSF109604,superfamily_SSF55781	-	no_errors
PDHA1	5160	genome.wustl.edu	37	X	19371264	19371264	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	X	19371264	19371264	C	T	SNP	PDHA1	NM_000284.3	human	genbank	58_37c	+1	reviewed	silent	c.483	p.Y161	0.996	HMMPfam_E1_dh,superfamily_Thiamin diphosphate-binding fold (THDP-binding)	HMMPfam_E1_dh,superfamily_Thiamin diphosphate-binding fold (THDP-binding)	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1624	p.E542K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLCL2	23228	genome.wustl.edu	37	3	17053177	17053177	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	3	17053177	17053177	A	T	SNP	PLCL2	NM_015184.5	human	genbank	58_37c	+1	validated	missense	c.1961	p.D654V	1.000	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,HMMPfam_PI-PLC-X,HMMSmart_PLCXc,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,HMMPfam_PH,HMMSmart_PH,superfamily_C2_CaLB,HMMPfam_efhand_like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF47473,superfamily_SSF50729	-	no_errors
PRRT4	0	genome.wustl.edu	37	7	127999474	127999474	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	7	127999474	127999474	G	A	SNP	PRRT4	NM_001114726.2	human	genbank	58_37c	-1	validated	missense	c.572	p.T191M	0.973	NULL	NULL	-	no_errors
RNF133	168433	genome.wustl.edu	37	7	122338268	122338268	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	7	122338268	122338268	T	G	SNP	RNF133	NM_139175.1	human	genbank	58_37c	-1	reviewed	silent	c.705	p.G235	0.025	NULL	HMMSmart_RING,HMMPfam_PA,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF52025,superfamily_SSF57850	-	no_errors
SALL1	6299	genome.wustl.edu	37	16	51174941	51174941	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	16	51174941	51174941	C	T	SNP	SALL1	NM_002968.2	human	genbank	58_37c	-1	reviewed	missense	c.1192	p.A398T	0.999	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SEZ6L	23544	genome.wustl.edu	37	22	26771550	26771557	+	Frame_Shift_Del	DEL	CGGCAGCA	CGGCAGCA	-	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	CGGCAGCA	CGGCAGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	22	26771550	26771557	CGGCAGCA	-	DEL	SEZ6L	NM_021115.4	human	genbank	58_37c	+1	validated	frame_shift_del	c.2837_2844	p.A946fs	1.000:0.989:1.000:1.000:1.000:1.000:1.000:0.553	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain	-	no_errors
SLC7A3	84889	genome.wustl.edu	37	X	70149701	70149701	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	X	70149701	70149701	G	A	SNP	SLC7A3	NM_001048164.2	human	genbank	58_37c	-1	reviewed	silent	c.147	p.G49	0.540	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SNORD18A	0	genome.wustl.edu	37	15	66795596	66795596	+	RNA	SNP	G	G	C	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	15	66795596	66795596	G	C	SNP	SNORD18A	NR_002441.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.873	-	-	-	no_errors
SPAG17	200162	genome.wustl.edu	37	1	118624074	118624074	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	1	118624074	118624074	T	G	SNP	SPAG17	NM_206996.2	human	genbank	58_37c	-1	validated	missense	c.1954	p.M652L	0.000	NULL	NULL	-	no_errors
TGM1	7051	genome.wustl.edu	37	14	24724646	24724646	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	14	24724646	24724646	G	A	SNP	TGM1	NM_000359.2	human	genbank	58_37c	-1	reviewed	silent	c.1569	p.I523	0.920	superfamily_SSF54001	HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_TGc,HMMPfam_Transglut_C,superfamily_Transglut_C,PatternScan_TRANSGLUTAMINASES,superfamily_Ig_E-set,superfamily_SSF54001	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7576855	7576855	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	17	7576855	7576855	G	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.991	p.Q331*	0.999	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
UBC	7316	genome.wustl.edu	37	12	125396685	125396686	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	12	125396685	125396686	-	G	INS	UBC	NM_021009.4	human	genbank	58_37c	-1	validated	frame_shift_ins	c.1633_1632	p.I544fs	1.000:1.000	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like	HMMPfam_ubiquitin,HMMSmart_SM00213,PatternScan_UBIQUITIN_1,superfamily_Ubiquitin-like	-	no_errors
UMOD	7369	genome.wustl.edu	37	16	20357504	20357504	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	16	20357504	20357504	C	A	SNP	UMOD	NM_001008389.1	human	genbank	58_37c	-1	reviewed	missense	c.1126	p.D376Y	0.826	HMMPfam_Zona_pellucida,HMMSmart_SM00241	PatternScan_ASX_HYDROXYL,HMMPfam_Zona_pellucida,HMMSmart_SM00241,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_ZP_1,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
UNC13B	10497	genome.wustl.edu	37	9	35231138	35231138	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	9	35231138	35231138	C	T	SNP	UNC13B	NM_006377.3	human	genbank	58_37c	+1	reviewed	missense	c.74	p.T25I	1.000	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_C2_CaLB,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_SSF57889	-	no_errors
USP53	54532	genome.wustl.edu	37	4	120181041	120181041	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	4	120181041	120181041	A	G	SNP	USP53	NM_019050.2	human	genbank	58_37c	+1	validated	silent	c.636	p.L212	0.897	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,superfamily_SSF54001	-	no_errors
XCR1	2829	genome.wustl.edu	37	3	46063416	46063416	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	3	46063416	46063416	C	G	SNP	XCR1	NM_001024644.1	human	genbank	58_37c	-1	reviewed	missense	c.24	p.E8D	0.000	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
