Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AOX1	0	genome.wustl.edu	37	2	201467067	201467070	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	2	201467067	201467070	AAGT	-	DEL	AOX1	NM_001159.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.497_498	p.K166fs	1.000:0.998	superfamily_CO dehydrogenase ISP C-domain like	PatternScan_MOLYBDOPTERIN_EUK,HMMPfam_Ald_Xan_dh_C,superfamily_CO dehydrogenase molybdoprotein N-domain-like,HMMPfam_Fer2,superfamily_2Fe-2S ferredoxin-like,HMMPfam_FAD_binding_5,HMMPfam_Fer2_2,superfamily_CO dehydrogenase ISP C-domain like,HMMPfam_CO_deh_flav_C,superfamily_CO dehydrogenase flavoprotein C-terminal domain-like,PatternScan_2FE2S_FER_1,HMMPfam_Ald_Xan_dh_C2,superfamily_Molybdenum cofactor-binding domain,superfamily_FAD-binding domain	-	no_errors
ATPAF1	0	genome.wustl.edu	37	1	47119504	47119504	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	1	47119504	47119504	G	A	SNP	ATPAF1	NM_022745.3	human	genbank	58_37c	-1	reviewed	silent	c.525	p.V175	1.000	HMMPfam_ATP11	HMMPfam_ATP11	-	no_errors
BTG3	0	genome.wustl.edu	37	21	18971026	18971026	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	21	18971026	18971026	T	G	SNP	BTG3	NM_001130914.1	human	genbank	58_37c	-1	reviewed	missense	c.560	p.H187P	1.000	NULL	HMMPfam_BTG,HMMSmart_SM00099,PatternScan_BTG_1	-	no_errors
CASC3	0	genome.wustl.edu	37	17	38296950	38296950	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	17	38296950	38296950	C	A	SNP	CASC3	NM_007359.4	human	genbank	58_37c	+1	reviewed	nonsense	c.149	p.S50*	1.000	NULL	HMMPfam_Btz	-	no_errors
CCNYL2	0	genome.wustl.edu	37	10	42924561	42924594	+	Frame_Shift_Del	DEL	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	-	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	CACCTTTGCTTGATATGATAATATAGTGCCAAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	10	42924561	42924594	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	-	DEL	CCNYL2	ENST00000426433	human	ensembl	58_37c	-1	known	frame_shift_del	c.471_438	p.D146fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.995:1.000:1.000:0.999:1.000:0.996:0.996:0.999	HMMSmart_CYCLIN,superfamily_Cyclin_like	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,superfamily_Cyclin_like	-	no_errors
CENPK	0	genome.wustl.edu	37	5	64814460	64814460	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	5	64814460	64814460	T	A	SNP	CENPK	NM_022145.3	human	genbank	58_37c	-1	validated	missense	c.652	p.I218F	1.000	NULL	NULL	-	no_errors
CORO2A	0	genome.wustl.edu	37	9	100888910	100888910	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	9	100888910	100888910	T	G	SNP	CORO2A	NM_003389.3	human	genbank	58_37c	-1	reviewed	missense	c.1367	p.H456P	0.002	NULL	HMMSmart_SM00320,PatternScan_GLNA_1,superfamily_WD40 repeat-like,HMMPfam_DUF1899,HMMPfam_DUF1900,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
CREBBP	0	genome.wustl.edu	37	16	3827658	3827658	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	16	3827658	3827658	T	C	SNP	CREBBP	NM_004380.2	human	genbank	58_37c	-1	reviewed	missense	c.2114	p.N705S	1.000	NULL	HMMPfam_zf-TAZ,HMMSmart_ZnF_TAZ,superfamily_TAZ_finger,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_KIX,superfamily_KIX,superfamily_Nuc_recept_coact,HMMPfam_DUF906,HMMPfam_DUF902,HMMPfam_Creb_binding,PatternScan_BROMODOMAIN_1	-	no_errors
ENSG00000105520	0	genome.wustl.edu	37	19	11475316	11475316	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	19	11475316	11475316	C	T	SNP	ENSG00000105520	ENST00000427915	human	ensembl	58_37c	+1	known	missense	c.1234	p.R412W	1.000	NULL	HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase	-	no_errors
ENSG00000198763	0	genome.wustl.edu	37	MT	5343	5343	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	MT	5343	5343	T	C	SNP	ENSG00000198763	ENST00000361453	human	ensembl	58_37c	+1	known	missense	c.874	p.F292L	NULL	HMMPfam_NADH_dehy_S2_C	HMMPfam_Oxidored_q1,HMMPfam_NADH_dehy_S2_C	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000198804	0	genome.wustl.edu	37	MT	7312	7312	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	MT	7312	7312	T	C	SNP	ENSG00000198804	ENST00000361624	human	ensembl	58_37c	+1	known	missense	c.1409	p.F470S	NULL	superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	mismatch_between_exon_seq_and_reference
ENSG00000212907	0	genome.wustl.edu	37	MT	10646	10646	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	MT	10646	10646	G	A	SNP	ENSG00000212907	ENST00000361335	human	ensembl	58_37c	+1	known	silent	c.177	p.V59	NULL	HMMPfam_Oxidored_q2	HMMPfam_Oxidored_q2	-	mismatch_between_exon_seq_and_reference
ENSG00000231182	0	genome.wustl.edu	37	1	142956513	142956514	+	Splice_Site	DEL	CT	CT	-	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	1	142956513	142956514	CT	-	DEL	ENSG00000231182	ENST00000424640	human	ensembl	58_37c	-1	known	splice_site_del	c.NULL	NULL	0.000:0.000	-	-	-	no_coding_region
ENSG00000232657	0	genome.wustl.edu	37	4	49110449	49110449	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	4	49110449	49110449	G	A	SNP	ENSG00000232657	ENST00000417204	human	ensembl	58_37c	-1	known	missense	c.53	p.P18L	0.000	NULL	NULL	-	no_stop_codon
ENSG00000237029	0	genome.wustl.edu	37	8	86556497	86556497	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	8	86556497	86556497	G	A	SNP	ENSG00000237029	ENST00000456858	human	ensembl	58_37c	-1	known	missense	c.203	p.P68L	0.005	NULL	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T	-	no_errors
ENSG00000249665	0	genome.wustl.edu	37	8	86786617	86786617	+	RNA	SNP	T	T	C	rs148157466	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	8	86786617	86786617	T	C	SNP	ENSG00000249665	ENST00000503540	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.021	-	-	-	no_errors
FAM186A	0	genome.wustl.edu	37	12	50745739	50745739	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	12	50745739	50745739	A	G	SNP	FAM186A	NM_001145475.1	human	genbank	58_37c	-1	provisional	missense	c.4876	p.S1626P	0.000	NULL	NULL	-	no_errors
FAM86B1	0	genome.wustl.edu	37	8	12044262	12044262	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	8	12044262	12044262	G	A	SNP	FAM86B1	NM_001083537.1	human	genbank	58_37c	-1	predicted	silent	c.321	p.A107	0.966	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
GABRP	0	genome.wustl.edu	37	5	170239126	170239130	+	Frame_Shift_Del	DEL	GAGAA	GAGAA	-	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	GAGAA	GAGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	5	170239126	170239130	GAGAA	-	DEL	GABRP	NM_014211.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1187_1191	p.R396fs	1.000:0.989:1.000:1.000:0.985	superfamily_Neurotransmitter-gated ion-channel transmembrane pore	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
KIAA1239	0	genome.wustl.edu	37	4	37446047	37446047	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	4	37446047	37446047	C	A	SNP	KIAA1239	NM_001144990.1	human	genbank	58_37c	+1	validated	missense	c.2437	p.Q813K	1.000	NULL	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1	-	no_errors
KRT31	0	genome.wustl.edu	37	17	39551243	39551243	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	17	39551243	39551243	G	T	SNP	KRT31	NM_002277.2	human	genbank	58_37c	-1	reviewed	silent	c.954	p.I318	0.997	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
MAGEC1	0	genome.wustl.edu	37	X	140993611	140993611	+	Missense_Mutation	SNP	T	T	G	rs141150813	byFrequency	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	X	140993611	140993611	T	G	SNP	MAGEC1	NM_005462.4	human	genbank	58_37c	+1	reviewed	missense	c.421	p.L141V	0.912	NULL	HMMPfam_MAGE	-	no_errors
MCAM	0	genome.wustl.edu	37	11	119185262	119185262	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	11	119185262	119185262	C	T	SNP	MCAM	NM_006500.2	human	genbank	58_37c	-1	validated	missense	c.496	p.G166R	0.981	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
MOCOS	0	genome.wustl.edu	37	18	33785062	33785062	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	18	33785062	33785062	G	A	SNP	MOCOS	NM_017947.2	human	genbank	58_37c	+1	validated	silent	c.1041	p.Q347	0.656	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases	HMMPfam_Aminotran_5,HMMPfam_MOSC,HMMPfam_MOSC_N,superfamily_PK beta-barrel domain-like,superfamily_PLP-dependent transferases	-	no_errors
MRPS7	0	genome.wustl.edu	37	17	73259535	73259536	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	17	73259535	73259536	TG	-	DEL	MRPS7	NM_015971.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.454_455	p.C152fs	1.000:1.000	HMMPfam_Ribosomal_S7,superfamily_Ribosomal protein S7	HMMPfam_Ribosomal_S7,superfamily_Ribosomal protein S7	-	no_errors
MUC20	0	genome.wustl.edu	37	3	195452649	195452649	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	3	195452649	195452649	C	T	SNP	MUC20	ENST00000436408	human	ensembl	58_37c	+1	known	missense	c.1175	p.P392L	0.001	NULL	NULL	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195506940	195506940	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	3	195506940	195506940	G	C	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.11127	p.H3709Q	0.197	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195506990	195506990	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	3	195506990	195506990	C	G	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.11077	p.D3693H	0.070	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195515008	195515008	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	3	195515008	195515008	C	G	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.3443	p.G1148A	0.038	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MXRA5	0	genome.wustl.edu	37	X	3242907	3242907	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	X	3242907	3242907	C	A	SNP	MXRA5	NM_015419.3	human	genbank	58_37c	-1	reviewed	missense	c.819	p.M273I	0.000	HMMSmart_SM00082,superfamily_L domain-like	HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
NFIB	0	genome.wustl.edu	37	9	14307139	14307139	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	9	14307139	14307139	C	G	SNP	NFIB	NM_005596.2	human	genbank	58_37c	-1	validated	silent	c.411	p.L137	1.000	HMMPfam_MH1,HMMSmart_SM00523	HMMPfam_CTF_NFI,HMMPfam_MH1,HMMSmart_SM00523,HMMPfam_NfI_DNAbd_pre-N,PatternScan_CTF_NFI_1	-	no_errors
PTPRZ1	0	genome.wustl.edu	37	7	121659196	121659196	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	7	121659196	121659196	A	G	SNP	PTPRZ1	NM_002851.2	human	genbank	58_37c	+1	reviewed	missense	c.4862	p.H1621R	1.000	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
SEPHS1	0	genome.wustl.edu	37	10	13378339	13378339	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	10	13378339	13378339	C	T	SNP	SEPHS1	NM_012247.3	human	genbank	58_37c	-1	reviewed	silent	c.309	p.A103	0.756	HMMPfam_AIRS,superfamily_PurM N-terminal domain-like	HMMPfam_AIRS,HMMPfam_AIRS_C,superfamily_PurM C-terminal domain-like,superfamily_PurM N-terminal domain-like	-	no_errors
SF3B2	0	genome.wustl.edu	37	11	65826508	65826508	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	11	65826508	65826508	G	A	SNP	SF3B2	NM_006842.2	human	genbank	58_37c	+1	reviewed	missense	c.1174	p.A392T	1.000	NULL	HMMPfam_SAP,HMMSmart_SM00513,HMMPfam_PSP,HMMSmart_SM00581,HMMPfam_DUF382	-	no_errors
SLC41A3	0	genome.wustl.edu	37	3	125727702	125727702	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	3	125727702	125727702	C	T	SNP	SLC41A3	NM_001008485.1	human	genbank	58_37c	-1	validated	missense	c.1127	p.R376Q	1.000	NULL	HMMPfam_MgtE,PatternScan_PEROXIDASE_2	-	no_errors
SLC7A8	0	genome.wustl.edu	37	14	23609736	23609736	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	14	23609736	23609736	G	T	SNP	SLC7A8	ENST00000453702	human	ensembl	58_37c	-1	known	missense	c.367	p.L123I	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TBC1D3	0	genome.wustl.edu	37	17	36339597	36339597	+	Missense_Mutation	SNP	G	G	T	rs306818	byFrequency	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	17	36339597	36339597	G	T	SNP	TBC1D3	NM_001123391.2	human	genbank	58_37c	-1	validated	missense	c.1060	p.Q354K	0.880	NULL	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
TP53	0	genome.wustl.edu	37	17	7577609	7577609	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	17	7577609	7577609	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	splice_site	c.673-1	e6-1	1.000	-	-	-	no_errors
TRIB2	0	genome.wustl.edu	37	2	12880637	12880637	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	2	12880637	12880637	G	A	SNP	TRIB2	NM_021643.3	human	genbank	58_37c	+1	reviewed	missense	c.749	p.G250E	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_errors
TSPAN12	0	genome.wustl.edu	37	7	120446741	120446741	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	7	120446741	120446741	C	A	SNP	TSPAN12	NM_012338.3	human	genbank	58_37c	-1	reviewed	missense	c.474	p.K158N	1.000	superfamily_Tetraspanin,HMMPfam_Tetraspannin	superfamily_Tetraspanin,HMMPfam_Tetraspannin,PatternScan_TM4_1	-	no_errors
TTN	0	genome.wustl.edu	37	2	179469435	179469435	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	2	179469435	179469435	C	G	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	silent	c.46677	p.G15559	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
WDR12	0	genome.wustl.edu	37	2	203776179	203776200	+	In_Frame_Del	DEL	GCGTGTTTGGAGCTGAGCCATG	GCGTGTTTGGAGCTGAGCCATG	-	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	GCGTGTTTGGAGCTGAGCCATG	GCGTGTTTGGAGCTGAGCCATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	2	203776179	203776200	GCGTGTTTGGAGCTGAGCCATG	-	DEL	WDR12	NM_018256.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.21_1	p.MAQLQTR1in_frame_del	1.000:1.000:1.000:0.978:0.999:0.998:0.998:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_NLE,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
XIRP2	0	genome.wustl.edu	37	2	168102346	168102346	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	2	168102346	168102346	G	T	SNP	XIRP2	NM_152381.4	human	genbank	58_37c	+1	validated	missense	c.4444	p.V1482L	0.656	NULL	HMMPfam_Xin	-	no_errors
ZBTB38	0	genome.wustl.edu	37	3	141161656	141161656	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A2-A1G1-01A-21D-A13L-09	TCGA-A2-A1G1-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afe70076-1044-4fdd-bebc-14a97b1a8363	24968a8a-5969-4b98-9d06-f286f771fb53	3	141161656	141161656	A	C	SNP	ZBTB38	NM_001080412.2	human	genbank	58_37c	+1	validated	silent	c.426	p.G142	0.000	NULL	HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
