Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA1	19	genome.wustl.edu	37	9	107581011	107581011	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	9	107581011	107581011	T	-	DEL	ABCA1	NM_005502.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.3395	p.K1132fs	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
AFTPH	54812	genome.wustl.edu	37	2	64780391	64780391	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	2	64780391	64780391	G	A	SNP	AFTPH	NM_203437.2	human	genbank	58_37c	+1	validated	missense	c.1783	p.E595K	0.977	NULL	PatternScan_EF_HAND_1	-	no_errors
C1orf198	84886	genome.wustl.edu	37	1	230979500	230979500	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	1	230979500	230979500	A	G	SNP	C1orf198	NM_032800.2	human	genbank	58_37c	-1	validated	missense	c.527	p.L176P	0.131	NULL	NULL	-	no_errors
CLNK	116449	genome.wustl.edu	37	4	10566399	10566399	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	4	10566399	10566399	T	C	SNP	CLNK	NM_052964.2	human	genbank	58_37c	-1	validated	missense	c.295	p.T99A	0.623	NULL	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	-	no_errors
CSMD1	64478	genome.wustl.edu	37	8	3263700	3263700	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	8	3263700	3263700	G	A	SNP	CSMD1	NM_033225.5	human	genbank	58_37c	-1	validated	silent	c.2118	p.N706	0.960	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
DHX36	170506	genome.wustl.edu	37	3	153995455	153995455	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	3	153995455	153995455	C	T	SNP	DHX36	NM_020865.2	human	genbank	58_37c	-1	validated	missense	c.2620	p.V874I	1.000	HMMPfam_DUF1605	HMMPfam_Helicase_C,HMMSmart_HELICc,PatternScan_DEAH_ATP_HELICASE,HMMPfam_HA2,HMMPfam_DEAD,HMMPfam_DUF1605,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
DSC2	1824	genome.wustl.edu	37	18	28669470	28669470	+	Missense_Mutation	SNP	C	C	A	rs146754448	by1000genomes	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	18	28669470	28669470	C	A	SNP	DSC2	NM_024422.3	human	genbank	58_37c	-1	reviewed	missense	c.562	p.V188L	0.997	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
FRYL	285527	genome.wustl.edu	37	4	48588708	48588708	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	4	48588708	48588708	A	G	SNP	FRYL	NM_015030.1	human	genbank	58_37c	-1	validated	missense	c.1678	p.C560R	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
HIST1H2AI	8329	genome.wustl.edu	37	6	27776209	27776209	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	6	27776209	27776209	C	G	SNP	HIST1H2AI	NM_003509.2	human	genbank	58_37c	+1	reviewed	missense	c.222	p.N74K	1.000	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00414,PatternScan_HISTONE_H2A,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
KANK2	25959	genome.wustl.edu	37	19	11289393	11289393	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	19	11289393	11289393	A	G	SNP	KANK2	NM_001136191.2	human	genbank	58_37c	-1	validated	missense	c.1253	p.L418P	0.000	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
KLHL24	54800	genome.wustl.edu	37	3	183368623	183368623	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	3	183368623	183368623	A	C	SNP	KLHL24	NM_017644.3	human	genbank	58_37c	+1	validated	missense	c.479	p.E160A	1.000	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LMAN1	3998	genome.wustl.edu	37	18	57000396	57000401	+	In_Frame_Del	DEL	TGTGTT	TGTGTT	-	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	TGTGTT	TGTGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	18	57000396	57000401	TGTGTT	-	DEL	LMAN1	NM_005570.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1301_1296	p.TQ433in_frame_del	1.000:1.000:0.002:0.088:0.008:0.001	NULL	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl	-	no_errors
MDGA1	266727	genome.wustl.edu	37	6	37622129	37622129	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	6	37622129	37622129	C	T	SNP	MDGA1	NM_153487.3	human	genbank	58_37c	-1	validated	silent	c.903	p.R301	0.821	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	PatternScan_NITROGENASE_1_1,HMMPfam_MAM,HMMSmart_SM00137,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
PELO	53918	genome.wustl.edu	37	5	52097628	52097628	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	5	52097628	52097628	C	A	SNP	PELO	NM_015946.4	human	genbank	58_37c	+1	reviewed	missense	c.1112	p.P371H	1.000	superfamily_L30e-like	HMMPfam_eRF1_1,HMMPfam_eRF1_2,HMMPfam_eRF1_3,superfamily_L30e-like	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RDH16	8608	genome.wustl.edu	37	12	57348901	57348901	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	12	57348901	57348901	G	A	SNP	RDH16	NM_003708.3	human	genbank	58_37c	-1	validated	missense	c.361	p.P121S	1.000	HMMPfam_adh_short,superfamily_NAD(P)-bd	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-bd	-	no_errors
RYR2	6262	genome.wustl.edu	37	1	237947546	237947546	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	1	237947546	237947546	C	T	SNP	RYR2	NM_001035.2	human	genbank	58_37c	+1	reviewed	silent	c.12534	p.N4178	0.242	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SLCO3A1	28232	genome.wustl.edu	37	15	92647538	92647538	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	15	92647538	92647538	C	T	SNP	SLCO3A1	NM_013272.3	human	genbank	58_37c	+1	validated	missense	c.775	p.R259C	1.000	HMMPfam_OATP,superfamily_MFS general substrate transporter	HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors	-	no_errors
STAG2	10735	genome.wustl.edu	37	X	123220476	123220476	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	X	123220476	123220476	C	T	SNP	STAG2	NM_001042749.1	human	genbank	58_37c	+1	validated	nonsense	c.3133	p.R1045*	1.000	superfamily_ARM-type_fold	HMMPfam_STAG,superfamily_ARM-type_fold	-	no_errors
TBX3	6926	genome.wustl.edu	37	12	115118819	115118820	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	12	115118819	115118820	-	C	INS	TBX3	NM_016569.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.522_521	p.K175fs	0.995:1.000	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
UNC5D	137970	genome.wustl.edu	37	8	35425642	35425642	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	8	35425642	35425642	A	T	SNP	UNC5D	NM_080872.2	human	genbank	58_37c	+1	validated	missense	c.349	p.N117Y	1.000	superfamily_Immunoglobulin	PatternScan_SERPIN,HMMPfam_Death,HMMSmart_SM00005,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_ZU5,HMMSmart_SM00218,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_DEATH domain,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
WDR91	29062	genome.wustl.edu	37	7	134890683	134890683	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	7	134890683	134890683	T	C	SNP	WDR91	NM_014149.3	human	genbank	58_37c	-1	validated	missense	c.722	p.E241G	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
ZC3HAV1	56829	genome.wustl.edu	37	7	138738313	138738313	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A0CH-01A-21W-A019-09	TCGA-A7-A0CH-10A-01W-A021-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	0abb515a-8645-42d9-a5f4-f1363bc17ef9	ef4ad5bd-7fd5-4847-86cc-70f0a075656d	7	138738313	138738313	A	T	SNP	ZC3HAV1	NM_020119.3	human	genbank	58_37c	-1	reviewed	missense	c.2333	p.M778K	0.992	HMMPfam_PARP,superfamily_ADP-ribosylation	HMMPfam_zf-CCCH,HMMPfam_PARP,superfamily_ADP-ribosylation	-	no_errors
