Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
CACNA2D3	55799	genome.wustl.edu	37	3	55107522	55107522	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	3	55107522	55107522	T	C	SNP	CACNA2D3	NM_018398.2	human	genbank	58_37c	+1	reviewed	missense	c.3038	p.V1013A	1.000	NULL	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Cache_1,HMMPfam_VWA_N,superfamily_vWA-like	-	no_errors
CCDC146	57639	genome.wustl.edu	37	7	76889257	76889270	+	Splice_Site	DEL	GTGTGTGTGTGTGT	GTGTGTGTGTGTGT	-	rs72304549	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	GTGTGTGTGTGTGT	GTGTGTGTGTGTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	7	76889257	76889270	GTGTGTGTGTGTGT	-	DEL	CCDC146	NM_020879.2	human	genbank	58_37c	+1	validated	intronic	c.759-69_759-56	e7-56	0.002:0.003:0.004:0.005:0.005:0.005:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors
COL2A1	1280	genome.wustl.edu	37	12	48370883	48370883	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	12	48370883	48370883	A	C	SNP	COL2A1	NM_001844.4	human	genbank	58_37c	-1	reviewed	splice_site	c.3327+2	e47+2	1.000	-	-	-	no_errors
E2F2	1870	genome.wustl.edu	37	1	23847527	23847527	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	1	23847527	23847527	C	T	SNP	E2F2	NM_004091.2	human	genbank	58_37c	-1	reviewed	silent	c.615	p.G205	1.000	NULL	HMMPfam_E2F_TDP,superfamily_SSF46785	-	no_errors
ENSG00000234719	0	genome.wustl.edu	37	16	12021477	12021477	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	16	12021477	12021477	G	A	SNP	ENSG00000234719	ENST00000399147	human	ensembl	58_37c	-1	known	missense	c.896	p.A299V	0.152	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
FAM122C	159091	genome.wustl.edu	37	X	133955536	133955536	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	X	133955536	133955536	G	A	SNP	FAM122C	ENST00000370786	human	ensembl	58_37c	+1	known	missense	c.227	p.R76H	0.000	NULL	NULL	-	no_errors
FBXO40	51725	genome.wustl.edu	37	3	121342188	121342188	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	3	121342188	121342188	G	A	SNP	FBXO40	NM_016298.3	human	genbank	58_37c	+1	validated	missense	c.1912	p.E638K	0.962	superfamily_F-box domain	HMMPfam_F-box,superfamily_TRAF domain-like,superfamily_F-box domain	-	no_errors
GPS2	2874	genome.wustl.edu	37	17	7217447	7217447	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	17	7217447	7217447	G	A	SNP	GPS2	NM_004489.4	human	genbank	58_37c	-1	reviewed	nonsense	c.349	p.Q117*	1.000	NULL	NULL	-	no_errors
LLGL1	3996	genome.wustl.edu	37	17	18145296	18145296	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	17	18145296	18145296	C	T	SNP	LLGL1	NM_004140.3	human	genbank	58_37c	+1	reviewed	silent	c.2865	p.R955	0.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
MAP2K4	6416	genome.wustl.edu	37	17	12032570	12032571	+	Frame_Shift_Ins	INS	-	-	TC	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	17	12032570	12032571	-	TC	INS	MAP2K4	NM_003010.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1006_1007	p.S339fs	1.000:1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MLLT4	4301	genome.wustl.edu	37	6	168289974	168289974	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	6	168289974	168289974	T	G	SNP	MLLT4	NM_001040001.1	human	genbank	58_37c	+1	validated	nonsense	c.974	p.L325*	1.000	HMMPfam_RA,HMMSmart_RA	HMMPfam_RA,HMMSmart_RA,HMMPfam_FHA,HMMSmart_FHA,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,superfamily_SMAD_FHA,HMMPfam_DIL,superfamily_SSF54236	-	no_errors
MYOM3	127294	genome.wustl.edu	37	1	24390618	24390618	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	1	24390618	24390618	G	A	SNP	MYOM3	NM_152372.3	human	genbank	58_37c	-1	validated	missense	c.3566	p.A1189V	0.980	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,PatternScan_EF_HAND_1,superfamily_Immunoglobulin	-	no_errors
NAPRT1	93100	genome.wustl.edu	37	8	144657391	144657391	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	8	144657391	144657391	T	G	SNP	NAPRT1	NM_145201.4	human	genbank	58_37c	-1	validated	silent	c.1416	p.P472	0.146	NULL	HMMPfam_NAPRTase,superfamily_Nicotinate/Quinolinate PRTase C-terminal domain-like	-	no_errors
NUMBL	9253	genome.wustl.edu	37	19	41183152	41183152	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	19	41183152	41183152	G	C	SNP	NUMBL	NM_004756.3	human	genbank	58_37c	-1	validated	missense	c.715	p.P239A	0.000	NULL	HMMPfam_PID,HMMSmart_PTB,HMMPfam_NumbF,superfamily_SSF50729	-	no_errors
PCDH12	51294	genome.wustl.edu	37	5	141334577	141334577	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	5	141334577	141334577	T	G	SNP	PCDH12	NM_016580.2	human	genbank	58_37c	-1	reviewed	missense	c.2840	p.N947T	1.000	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PDCD11	22984	genome.wustl.edu	37	10	105200238	105200238	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	10	105200238	105200238	A	T	SNP	PDCD11	NM_014976.1	human	genbank	58_37c	+1	validated	missense	c.4340	p.Q1447L	0.191	NULL	HMMPfam_S1,HMMSmart_HAT,superfamily_Nucleic_acid_OB,HMMSmart_S1,superfamily_SSF48452	-	no_errors
PLA2G15	23659	genome.wustl.edu	37	16	68293055	68293055	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	16	68293055	68293055	A	G	SNP	PLA2G15	NM_012320.3	human	genbank	58_37c	+1	reviewed	missense	c.734	p.N245S	1.000	HMMPfam_LACT,superfamily_alpha/beta-Hydrolases	HMMPfam_LACT,superfamily_alpha/beta-Hydrolases	-	no_errors
RPP30	10556	genome.wustl.edu	37	10	92656100	92656100	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	10	92656100	92656100	C	T	SNP	RPP30	NM_001104546.1	human	genbank	58_37c	+1	validated	silent	c.648	p.D216	1.000	HMMPfam_RNase_P_p30,superfamily_PHP domain-like	HMMPfam_RNase_P_p30,superfamily_PHP domain-like	-	no_errors
SLC25A22	79751	genome.wustl.edu	37	11	793561	793561	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	11	793561	793561	G	A	SNP	SLC25A22	NM_024698.4	human	genbank	58_37c	-1	provisional	silent	c.261	p.N87	0.997	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
SLC9A10	285335	genome.wustl.edu	37	3	111901058	111901058	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	3	111901058	111901058	G	C	SNP	SLC9A10	NM_183061.1	human	genbank	58_37c	-1	validated	missense	c.2571	p.I857M	0.012	NULL	HMMPfam_cNMP_binding,HMMPfam_Ion_trans,HMMPfam_Na_H_Exchanger,superfamily_cAMP-binding domain-like,PatternScan_WD_REPEATS_1,superfamily_Voltage-gated potassium channels	-	no_errors
TUBGCP5	114791	genome.wustl.edu	37	15	22866738	22866738	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	15	22866738	22866738	G	A	SNP	TUBGCP5	NM_001102610.1	human	genbank	58_37c	+1	validated	missense	c.2350	p.V784I	1.000	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors
UNC45B	146862	genome.wustl.edu	37	17	33504550	33504550	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	17	33504550	33504550	G	A	SNP	UNC45B	NM_173167.2	human	genbank	58_37c	+1	validated	missense	c.2182	p.D728N	1.000	superfamily_ARM repeat	HMMSmart_SM00185,HMMPfam_TPR_1,superfamily_ARM repeat,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
ZNF511	118472	genome.wustl.edu	37	10	135125374	135125374	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01A-11D-A12Q-09	TCGA-AR-A1AU-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5	92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a	10	135125374	135125374	G	A	SNP	ZNF511	ENST00000359035	human	ensembl	58_37c	+1	known	missense	c.709	p.V237I	0.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
