Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC8	6833	genome.wustl.edu	37	11	17434293	17434293	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	11	17434293	17434293	C	T	SNP	ABCC8	NM_000352.3	human	genbank	58_37c	-1	reviewed	missense	c.2476	p.G826S	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCD2	225	genome.wustl.edu	37	12	39947886	39947886	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	12	39947886	39947886	C	T	SNP	ABCD2	NM_005164.3	human	genbank	58_37c	-1	reviewed	missense	c.2051	p.R684H	1.000	HMMSmart_SM00382	HMMPfam_ABC_tran,HMMSmart_SM00382,HMMPfam_ABC_membrane_2,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ANKRD12	23253	genome.wustl.edu	37	18	9258309	9258309	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	18	9258309	9258309	A	G	SNP	ANKRD12	NM_015208.3	human	genbank	58_37c	+1	validated	missense	c.5044	p.I1682V	0.539	superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
BCOR	54880	genome.wustl.edu	37	X	39923606	39923606	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	X	39923606	39923606	C	T	SNP	BCOR	NM_001123385.1	human	genbank	58_37c	-1	reviewed	missense	c.3485	p.R1162H	0.934	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
C20orf91	284800	genome.wustl.edu	37	20	26062002	26062002	+	Missense_Mutation	SNP	G	G	C	rs74725001	byCluster	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	20	26062002	26062002	G	C	SNP	C20orf91	ENST00000246000	human	ensembl	58_37c	+1	known	missense	c.354	p.Q118H	0.160	NULL	NULL	-	no_errors
CNP	1267	genome.wustl.edu	37	17	40123967	40123967	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	17	40123967	40123967	G	A	SNP	CNP	NM_033133.4	human	genbank	58_37c	+1	validated	missense	c.734	p.R245K	1.000	HMMPfam_CNPase,superfamily_LigT-like	HMMPfam_CNPase,superfamily_LigT-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CRYGD	1421	genome.wustl.edu	37	2	208988842	208988842	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	2	208988842	208988842	G	A	SNP	CRYGD	NM_006891.3	human	genbank	58_37c	-1	reviewed	silent	c.246	p.I82	1.000	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF	-	no_errors
CSMD1	64478	genome.wustl.edu	37	8	2823394	2823394	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	8	2823394	2823394	A	G	SNP	CSMD1	NM_033225.5	human	genbank	58_37c	-1	validated	silent	c.9186	p.Y3062	0.925	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
ENSG00000246591	0	genome.wustl.edu	37	1	38149186	38149186	+	RNA	SNP	A	A	G	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	1	38149186	38149186	A	G	SNP	C1orf109	NM_017850.1	human	genbank	58_37c	-1	predicted	intronic	c.456-77	e3-77	0.000	-	-	-	no_errors
FADS2	9415	genome.wustl.edu	37	11	61607902	61607902	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	11	61607902	61607902	C	T	SNP	FADS2	NM_004265.2	human	genbank	58_37c	+1	reviewed	missense	c.415	p.H139Y	1.000	NULL	HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain,HMMPfam_FA_desaturase	-	no_errors
FLG	2312	genome.wustl.edu	37	1	152281273	152281273	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	1	152281273	152281273	G	T	SNP	FLG	NM_002016.1	human	genbank	58_37c	-1	reviewed	missense	c.6089	p.A2030E	0.000	HMMPfam_Filaggrin	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8115701	8115704	+	Splice_Site	DEL	GATT	GATT	-	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	GATT	GATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	10	8115701	8115704	GATT	-	DEL	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1052_1053	p.N351fs	1.000:1.000:1.000:1.000	HMMPfam_GATA,HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
KIAA1644	85352	genome.wustl.edu	37	22	44681464	44681464	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	22	44681464	44681464	C	T	SNP	KIAA1644	ENST00000381176	human	ensembl	58_37c	-1	known	missense	c.443	p.R148Q	1.000	NULL	NULL	-	no_errors
KIAA1755	85449	genome.wustl.edu	37	20	36856567	36856567	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	20	36856567	36856567	G	A	SNP	KIAA1755	NM_001029864.1	human	genbank	58_37c	-1	predicted	silent	c.1947	p.S649	0.761	NULL	superfamily_Spectrin repeat	-	no_errors
L3MBTL4	91133	genome.wustl.edu	37	18	6171939	6171939	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	18	6171939	6171939	A	G	SNP	L3MBTL4	NM_173464.3	human	genbank	58_37c	-1	validated	silent	c.984	p.V328	0.998	HMMPfam_MBT,HMMSmart_MBT,superfamily_SSF63748	HMMPfam_SAM_1,HMMSmart_SAM,HMMPfam_zf-C2HC,HMMPfam_MBT,HMMSmart_MBT,superfamily_SAM_homology,superfamily_SSF103637,superfamily_SSF63748	-	no_errors
LOC729792	729792	genome.wustl.edu	37	6	30997597	30997597	+	Silent	SNP	T	A	A	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	6	30997597	30997597	T	A	SNP	LOC729792	XM_001131329.1	human	genbank	58_37c	+1	model	silent	c.3633	p.S1211	0.000	NULL	NULL	-	no_errors
MLL3	58508	genome.wustl.edu	37	7	151859199	151859200	+	Splice_Site	INS	-	-	A	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	7	151859199	151859200	-	A	INS	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	splice_site_ins	c.11460+2_11460+1	e43+2	1.000:1.000	-	-	-	no_errors
MPP7	143098	genome.wustl.edu	37	10	28436429	28436429	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	10	28436429	28436429	A	G	SNP	MPP7	NM_173496.3	human	genbank	58_37c	-1	validated	missense	c.298	p.S100P	1.000	HMMSmart_L27,HMMPfam_L27	HMMSmart_SH3,superfamily_SH3,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_L27,HMMPfam_Guanylate_kin,HMMSmart_GuKc,HMMPfam_SH3_2,HMMPfam_L27,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52540	-	no_errors
MYO5B	4645	genome.wustl.edu	37	18	47373601	47373601	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	18	47373601	47373601	C	T	SNP	MYO5B	NM_001080467.2	human	genbank	58_37c	-1	reviewed	silent	c.4374	p.T1458	0.020	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NEFM	4741	genome.wustl.edu	37	8	24774812	24774812	+	Missense_Mutation	SNP	G	G	A	rs61751047	byCluster;byFrequency	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	8	24774812	24774812	G	A	SNP	NEFM	NM_005382.2	human	genbank	58_37c	+1	reviewed	missense	c.1444	p.V482I	0.001	NULL	HMMPfam_Filament_head,HMMPfam_Filament,PatternScan_IF	-	no_errors
PDAP1	11333	genome.wustl.edu	37	7	98997926	98997926	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	7	98997926	98997926	C	T	SNP	PDAP1	NM_014891.5	human	genbank	58_37c	-1	validated	missense	c.335	p.R112Q	1.000	HMMPfam_PP28	HMMPfam_PP28	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	3	178936095	178936095	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1637	p.Q546R	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PKHD1L1	93035	genome.wustl.edu	37	8	110442249	110442249	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	8	110442249	110442249	C	T	SNP	PKHD1L1	NM_177531.4	human	genbank	58_37c	+1	validated	missense	c.3212	p.A1071V	0.003	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen	-	no_errors
SFMBT1	51460	genome.wustl.edu	37	3	52954632	52954632	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	3	52954632	52954632	A	C	SNP	SFMBT1	NM_001005158.1	human	genbank	58_37c	-1	reviewed	missense	c.1293	p.S431R	1.000	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_MBT,HMMSmart_SM00561,superfamily_SAM/Pointed domain,superfamily_Tudor/PWWP/MBT	-	no_errors
ZMYM3	9203	genome.wustl.edu	37	X	70464311	70464311	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	X	70464311	70464311	G	A	SNP	ZMYM3	NM_005096.3	human	genbank	58_37c	-1	reviewed	missense	c.3121	p.R1041W	1.000	NULL	HMMPfam_zf-FCS,HMMSmart_SM00746	-	no_errors
ZNF454	285676	genome.wustl.edu	37	5	178392823	178392823	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0I5-01A-11W-A100-09	TCGA-B6-A0I5-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f1139266-fade-4d27-ac67-60870e666295	2a5bbcf0-d39c-4f1b-a200-f778e586d42e	5	178392823	178392823	G	C	SNP	ZNF454	NM_182594.2	human	genbank	58_37c	+1	validated	missense	c.1418	p.C473S	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
